Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435290 | XP_003603724.1 | 83.636 | 220 | 20 | 5 | 1 | 214 | 3 | 212 | 2.98e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435290 | sp|Q9LQZ7|BBX21_ARATH | 39.453 | 256 | 89 | 6 | 1 | 193 | 3 | 255 | 9.94e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435290 | G7J4N4 | 83.636 | 220 | 20 | 5 | 1 | 214 | 3 | 212 | 1.42e-123 | 358 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0435290 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136180 | Msa0435290 | -0.805230 | 1.475758e-49 | -8.615850e-47 |
| Msa0137010 | Msa0435290 | -0.821434 | 4.045474e-53 | -8.615850e-47 |
| Msa0435290 | Msa0525180 | -0.809618 | 1.730992e-50 | -8.615850e-47 |
| Msa0435290 | Msa1133440 | -0.805776 | 1.133467e-49 | -8.615850e-47 |
| Msa0435290 | Msa1223540 | 0.800326 | 1.518649e-48 | -8.615850e-47 |
| Msa0435290 | Msa1273320 | 0.818435 | 1.963652e-52 | -8.615850e-47 |
| Msa0435290 | Msa1287100 | -0.834481 | 2.923986e-56 | -8.615850e-47 |
| Msa0435290 | Msa1295210 | -0.804246 | 2.368608e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435290 | MtrunA17_Chr3g0142221 | 83.636 | 220 | 20 | 5 | 1 | 214 | 3 | 212 | 2.74e-127 | 358 |
| Msa0435290 | MtrunA17_Chr1g0155811 | 47.222 | 252 | 75 | 11 | 1 | 212 | 3 | 236 | 7.06e-56 | 178 |
| Msa0435290 | MtrunA17_Chr3g0145061 | 46.040 | 202 | 55 | 6 | 1 | 152 | 3 | 200 | 3.36e-50 | 162 |
| Msa0435290 | MtrunA17_Chr4g0035651 | 44.379 | 169 | 58 | 3 | 1 | 135 | 3 | 169 | 5.16e-45 | 149 |
| Msa0435290 | MtrunA17_Chr2g0314671 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 1.98e-34 | 124 |
| Msa0435290 | MtrunA17_Chr2g0329511 | 34.842 | 221 | 127 | 5 | 1 | 209 | 3 | 218 | 8.17e-34 | 121 |
| Msa0435290 | MtrunA17_Chr4g0033641 | 34.634 | 205 | 121 | 3 | 1 | 197 | 3 | 202 | 6.79e-31 | 113 |
| Msa0435290 | MtrunA17_Chr5g0405151 | 33.333 | 180 | 103 | 7 | 3 | 180 | 5 | 169 | 1.77e-21 | 87.4 |
| Msa0435290 | MtrunA17_Chr1g0150471 | 38.384 | 99 | 49 | 1 | 3 | 101 | 6 | 92 | 4.31e-16 | 75.5 |
| Msa0435290 | MtrunA17_Chr3g0136701 | 37.895 | 95 | 47 | 1 | 3 | 97 | 6 | 88 | 6.40e-14 | 68.9 |
| Msa0435290 | MtrunA17_Chr4g0072871 | 35.789 | 95 | 49 | 1 | 3 | 97 | 22 | 104 | 2.84e-13 | 67.8 |
| Msa0435290 | MtrunA17_Chr7g0220721 | 30.000 | 120 | 72 | 1 | 3 | 122 | 26 | 133 | 3.70e-13 | 67.4 |
| Msa0435290 | MtrunA17_Chr5g0429341 | 30.526 | 95 | 54 | 1 | 3 | 97 | 5 | 87 | 1.22e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435290 | AT1G75540.1 | 39.453 | 256 | 89 | 6 | 1 | 193 | 3 | 255 | 1.01e-50 | 167 |
| Msa0435290 | AT4G39070.1 | 61.062 | 113 | 42 | 1 | 1 | 113 | 3 | 113 | 2.14e-43 | 146 |
| Msa0435290 | AT1G78600.1 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 1.20e-34 | 125 |
| Msa0435290 | AT1G78600.2 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 2.17e-34 | 125 |
| Msa0435290 | AT1G06040.2 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 1.10e-33 | 119 |
| Msa0435290 | AT2G31380.1 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 2.58e-33 | 120 |
| Msa0435290 | AT1G06040.1 | 52.381 | 105 | 47 | 1 | 1 | 105 | 3 | 104 | 8.41e-33 | 119 |
| Msa0435290 | AT4G10240.1 | 42.537 | 134 | 68 | 3 | 1 | 131 | 3 | 130 | 2.87e-28 | 104 |
| Msa0435290 | AT4G38960.1 | 41.964 | 112 | 59 | 2 | 1 | 112 | 3 | 108 | 1.56e-22 | 90.5 |
| Msa0435290 | AT4G38960.6 | 41.964 | 112 | 59 | 2 | 1 | 112 | 3 | 108 | 1.56e-22 | 90.5 |
| Msa0435290 | AT2G21320.1 | 41.964 | 112 | 59 | 2 | 1 | 112 | 3 | 108 | 6.68e-22 | 88.6 |
| Msa0435290 | AT2G24790.2 | 38.947 | 95 | 46 | 1 | 3 | 97 | 8 | 90 | 7.48e-16 | 73.6 |
| Msa0435290 | AT2G24790.1 | 38.947 | 95 | 46 | 1 | 3 | 97 | 8 | 90 | 1.67e-15 | 73.9 |
| Msa0435290 | AT4G38960.3 | 30.323 | 155 | 59 | 3 | 1 | 112 | 3 | 151 | 1.26e-14 | 70.5 |
| Msa0435290 | AT5G24930.1 | 36.842 | 95 | 48 | 1 | 3 | 97 | 6 | 88 | 4.38e-14 | 70.5 |
| Msa0435290 | AT5G15850.1 | 34.259 | 108 | 59 | 1 | 3 | 110 | 12 | 107 | 5.01e-14 | 70.1 |
| Msa0435290 | AT3G02380.1 | 32.143 | 112 | 64 | 1 | 3 | 114 | 16 | 115 | 7.83e-14 | 69.7 |
| Msa0435290 | AT5G15840.2 | 29.839 | 124 | 75 | 1 | 3 | 126 | 20 | 131 | 5.33e-13 | 66.6 |
| Msa0435290 | AT5G15840.1 | 29.839 | 124 | 75 | 1 | 3 | 126 | 20 | 131 | 1.33e-12 | 66.2 |
| Msa0435290 | AT2G33500.2 | 34.951 | 103 | 55 | 1 | 1 | 103 | 10 | 100 | 1.68e-12 | 65.9 |
| Msa0435290 | AT2G33500.1 | 34.951 | 103 | 55 | 1 | 1 | 103 | 10 | 100 | 1.75e-12 | 65.9 |
| Msa0435290 | AT1G28050.1 | 36.893 | 103 | 53 | 1 | 1 | 103 | 7 | 97 | 2.42e-12 | 65.5 |
Find 49 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGTTGGCAGAATTATT+AGG | 0.206585 | 3_2:-88413443 | None:intergenic |
| AAGAAACCTATTATGCTTCT+TGG | 0.240931 | 3_2:-88413740 | None:intergenic |
| CCCCAAACTGCTGCTGAAAT+TGG | 0.248979 | 3_2:-88414112 | None:intergenic |
| TATTCATGAGGAAAATATTC+TGG | 0.282344 | 3_2:+88413987 | Msa0435290:CDS |
| GAGAGAGAAGTGACGGTGTT+TGG | 0.349442 | 3_2:-88413414 | None:intergenic |
| AATGGTTGGCAGAATTATTA+GGG | 0.384669 | 3_2:-88413442 | None:intergenic |
| AACACACCAAGAAGCATAAT+AGG | 0.390006 | 3_2:+88413734 | Msa0435290:CDS |
| CATAATAGGTTTCTTCTAAG+TGG | 0.399657 | 3_2:+88413748 | Msa0435290:CDS |
| GAGTGTGATTTGAAGATTCA+TGG | 0.427331 | 3_2:+88413703 | Msa0435290:CDS |
| CTACAACAGCAGAATCATAT+TGG | 0.434122 | 3_2:+88413919 | Msa0435290:CDS |
| TCATGAGAGGGAACAGAAGA+AGG | 0.454520 | 3_2:-88413895 | None:intergenic |
| GTGGTCGCAGGTGGAGCATA+AGG | 0.456556 | 3_2:-88413363 | None:intergenic |
| ACAGTTGGAGGAGGAGAAGC+AGG | 0.467510 | 3_2:-88413787 | None:intergenic |
| ATAATAGGTTTCTTCTAAGT+GGG | 0.482873 | 3_2:+88413749 | Msa0435290:CDS |
| TTCTCTAGCGAGAGCATGTG+TGG | 0.496184 | 3_2:+88414015 | Msa0435290:CDS |
| GGAGTTTCTTCATGAACAGT+TGG | 0.498814 | 3_2:-88413802 | None:intergenic |
| GAACAGAAGAAGGGGAGTCA+AGG | 0.507606 | 3_2:-88413885 | None:intergenic |
| AAATATCACAGAGAGGGAAA+TGG | 0.517933 | 3_2:-88413460 | None:intergenic |
| ATGGTGGACACGGTGGTCGC+AGG | 0.523492 | 3_2:-88413375 | None:intergenic |
| AGAGAAGTGACGGTGTTTGG+AGG | 0.523823 | 3_2:-88413411 | None:intergenic |
| CAAACTGCTGCTGAAATTGG+TGG | 0.525028 | 3_2:-88414109 | None:intergenic |
| GTGGACACGGTGGTCGCAGG+TGG | 0.531543 | 3_2:-88413372 | None:intergenic |
| TGGAGGCGAGTTTGTTAGCA+TGG | 0.539793 | 3_2:-88413394 | None:intergenic |
| GTTTCTTCATGAACAGTTGG+AGG | 0.542162 | 3_2:-88413799 | None:intergenic |
| CATGAGAGGGAACAGAAGAA+GGG | 0.544618 | 3_2:-88413894 | None:intergenic |
| TCTTCATGAACAGTTGGAGG+AGG | 0.551533 | 3_2:-88413796 | None:intergenic |
| TGCTGTTGTAGTTCATGAGA+GGG | 0.552947 | 3_2:-88413907 | None:intergenic |
| GTTTGTTAGCATGGTGGACA+CGG | 0.562165 | 3_2:-88413385 | None:intergenic |
| CTTTGTTTGTAGGAAAGAAG+AGG | 0.568458 | 3_2:+88413640 | Msa0435290:intron |
| CTGCTGTTGTAGTTCATGAG+AGG | 0.569968 | 3_2:-88413908 | None:intergenic |
| GCATAAGGCGGCTTCATCCG+CGG | 0.570214 | 3_2:-88413348 | None:intergenic |
| GGTTGGCAGAATTATTAGGG+TGG | 0.573220 | 3_2:-88413439 | None:intergenic |
| AGTGCGACATCTGTAACAAA+CGG | 0.576581 | 3_2:+88413306 | Msa0435290:CDS |
| TACTTGATAAACACTATCCC+AGG | 0.579028 | 3_2:+88413844 | Msa0435290:CDS |
| GGTGGTTGAGAGAGAAGTGA+CGG | 0.579633 | 3_2:-88413421 | None:intergenic |
| GAATAATACAGTGGTGCTTG+AGG | 0.582637 | 3_2:-88414048 | None:intergenic |
| ATGAGAGGGAACAGAAGAAG+GGG | 0.584490 | 3_2:-88413893 | None:intergenic |
| CGACATCTGTAACAAACGGC+AGG | 0.587499 | 3_2:+88413310 | Msa0435290:CDS |
| TACTCAGATATAGTAAAACT+AGG | 0.594122 | 3_2:-88413823 | None:intergenic |
| GTTTGTTACAGATGTCGCAC+TGG | 0.600679 | 3_2:-88413304 | None:intergenic |
| TCTCTAGCGAGAGCATGTGT+GGG | 0.602430 | 3_2:+88414016 | Msa0435290:CDS |
| GTCGCAGGTGGAGCATAAGG+CGG | 0.608572 | 3_2:-88413360 | None:intergenic |
| CGAGGCAAATATCACAGAGA+GGG | 0.613147 | 3_2:-88413466 | None:intergenic |
| ATCACAGAGAGGGAAATGGT+TGG | 0.646805 | 3_2:-88413456 | None:intergenic |
| TGTTAATTATCATATTCATG+AGG | 0.653612 | 3_2:+88413975 | Msa0435290:CDS |
| AGGCGAGTTTGTTAGCATGG+TGG | 0.655308 | 3_2:-88413391 | None:intergenic |
| TGTTAGCATGGTGGACACGG+TGG | 0.691209 | 3_2:-88413382 | None:intergenic |
| ACGAGGCAAATATCACAGAG+AGG | 0.701262 | 3_2:-88413467 | None:intergenic |
| GGCTTCTTTATTCTGCACCG+CGG | 0.708284 | 3_2:+88413331 | Msa0435290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAGAATGAATAT+TGG | - | chr3_2:88413501-88413520 | None:intergenic | 15.0% |
| !! | ATACATAAAAGAATGAATAT+TGG | - | chr3_2:88413501-88413520 | None:intergenic | 15.0% |
| !! | TGTTAATTATCATATTCATG+AGG | + | chr3_2:88413975-88413994 | Msa0435290:CDS | 20.0% |
| !!! | ATTTTTTCAGAATAATACAG+TGG | - | chr3_2:88414060-88414079 | None:intergenic | 20.0% |
| !!! | ACTGTATTATTCTGAAAAAA+TGG | + | chr3_2:88414059-88414078 | Msa0435290:CDS | 20.0% |
| !! | TGTTAATTATCATATTCATG+AGG | + | chr3_2:88413975-88413994 | Msa0435290:CDS | 20.0% |
| !!! | ATTTTTTCAGAATAATACAG+TGG | - | chr3_2:88414060-88414079 | None:intergenic | 20.0% |
| !!! | ACTGTATTATTCTGAAAAAA+TGG | + | chr3_2:88414059-88414078 | Msa0435290:CDS | 20.0% |
| ! | ATAATAGGTTTCTTCTAAGT+GGG | + | chr3_2:88413749-88413768 | Msa0435290:CDS | 25.0% |
| ! | TACTCAGATATAGTAAAACT+AGG | - | chr3_2:88413826-88413845 | None:intergenic | 25.0% |
| ! | TATTCATGAGGAAAATATTC+TGG | + | chr3_2:88413987-88414006 | Msa0435290:CDS | 25.0% |
| ! | ATAATAGGTTTCTTCTAAGT+GGG | + | chr3_2:88413749-88413768 | Msa0435290:CDS | 25.0% |
| ! | TACTCAGATATAGTAAAACT+AGG | - | chr3_2:88413826-88413845 | None:intergenic | 25.0% |
| ! | TATTCATGAGGAAAATATTC+TGG | + | chr3_2:88413987-88414006 | Msa0435290:CDS | 25.0% |
| AATGGTTGGCAGAATTATTA+GGG | - | chr3_2:88413445-88413464 | None:intergenic | 30.0% | |
| AAATGGTTGGCAGAATTATT+AGG | - | chr3_2:88413446-88413465 | None:intergenic | 30.0% | |
| ! | GAGTTTGTTTCTTTGTTTGT+AGG | + | chr3_2:88413630-88413649 | Msa0435290:intron | 30.0% |
| !!! | AAGAGGTTTTGTTTTTTGTC+AGG | + | chr3_2:88413657-88413676 | Msa0435290:CDS | 30.0% |
| AAGAAACCTATTATGCTTCT+TGG | - | chr3_2:88413743-88413762 | None:intergenic | 30.0% | |
| CATAATAGGTTTCTTCTAAG+TGG | + | chr3_2:88413748-88413767 | Msa0435290:CDS | 30.0% | |
| AATGGTTGGCAGAATTATTA+GGG | - | chr3_2:88413445-88413464 | None:intergenic | 30.0% | |
| AAATGGTTGGCAGAATTATT+AGG | - | chr3_2:88413446-88413465 | None:intergenic | 30.0% | |
| ! | GAGTTTGTTTCTTTGTTTGT+AGG | + | chr3_2:88413630-88413649 | Msa0435290:intron | 30.0% |
| !!! | AAGAGGTTTTGTTTTTTGTC+AGG | + | chr3_2:88413657-88413676 | Msa0435290:CDS | 30.0% |
| AAGAAACCTATTATGCTTCT+TGG | - | chr3_2:88413743-88413762 | None:intergenic | 30.0% | |
| CATAATAGGTTTCTTCTAAG+TGG | + | chr3_2:88413748-88413767 | Msa0435290:CDS | 30.0% | |
| AAATATCACAGAGAGGGAAA+TGG | - | chr3_2:88413463-88413482 | None:intergenic | 35.0% | |
| GAATATTGGAGAGAATTACG+AGG | - | chr3_2:88413487-88413506 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGTAGGAAAGAAG+AGG | + | chr3_2:88413640-88413659 | Msa0435290:intron | 35.0% |
| GAGTGTGATTTGAAGATTCA+TGG | + | chr3_2:88413703-88413722 | Msa0435290:CDS | 35.0% | |
| ! | AACACACCAAGAAGCATAAT+AGG | + | chr3_2:88413734-88413753 | Msa0435290:CDS | 35.0% |
| TACTTGATAAACACTATCCC+AGG | + | chr3_2:88413844-88413863 | Msa0435290:CDS | 35.0% | |
| AATCTTCAAACTTCCAACCT+GGG | - | chr3_2:88413864-88413883 | None:intergenic | 35.0% | |
| AAATCTTCAAACTTCCAACC+TGG | - | chr3_2:88413865-88413884 | None:intergenic | 35.0% | |
| CTACAACAGCAGAATCATAT+TGG | + | chr3_2:88413919-88413938 | Msa0435290:CDS | 35.0% | |
| AAATATCACAGAGAGGGAAA+TGG | - | chr3_2:88413463-88413482 | None:intergenic | 35.0% | |
| GAATATTGGAGAGAATTACG+AGG | - | chr3_2:88413487-88413506 | None:intergenic | 35.0% | |
| ! | CTTTGTTTGTAGGAAAGAAG+AGG | + | chr3_2:88413640-88413659 | Msa0435290:intron | 35.0% |
| GAGTGTGATTTGAAGATTCA+TGG | + | chr3_2:88413703-88413722 | Msa0435290:CDS | 35.0% | |
| ! | AACACACCAAGAAGCATAAT+AGG | + | chr3_2:88413734-88413753 | Msa0435290:CDS | 35.0% |
| TACTTGATAAACACTATCCC+AGG | + | chr3_2:88413844-88413863 | Msa0435290:CDS | 35.0% | |
| AATCTTCAAACTTCCAACCT+GGG | - | chr3_2:88413864-88413883 | None:intergenic | 35.0% | |
| AAATCTTCAAACTTCCAACC+TGG | - | chr3_2:88413865-88413884 | None:intergenic | 35.0% | |
| CTACAACAGCAGAATCATAT+TGG | + | chr3_2:88413919-88413938 | Msa0435290:CDS | 35.0% | |
| AGTGCGACATCTGTAACAAA+CGG | + | chr3_2:88413306-88413325 | Msa0435290:CDS | 40.0% | |
| GTTTCTTCATGAACAGTTGG+AGG | - | chr3_2:88413802-88413821 | None:intergenic | 40.0% | |
| GGAGTTTCTTCATGAACAGT+TGG | - | chr3_2:88413805-88413824 | None:intergenic | 40.0% | |
| TGATAAACACTATCCCAGGT+TGG | + | chr3_2:88413848-88413867 | Msa0435290:intron | 40.0% | |
| TGCTGTTGTAGTTCATGAGA+GGG | - | chr3_2:88413910-88413929 | None:intergenic | 40.0% | |
| GAATAATACAGTGGTGCTTG+AGG | - | chr3_2:88414051-88414070 | None:intergenic | 40.0% | |
| AGTGCGACATCTGTAACAAA+CGG | + | chr3_2:88413306-88413325 | Msa0435290:CDS | 40.0% | |
| GTTTCTTCATGAACAGTTGG+AGG | - | chr3_2:88413802-88413821 | None:intergenic | 40.0% | |
| GGAGTTTCTTCATGAACAGT+TGG | - | chr3_2:88413805-88413824 | None:intergenic | 40.0% | |
| TGATAAACACTATCCCAGGT+TGG | + | chr3_2:88413848-88413867 | Msa0435290:intron | 40.0% | |
| TGCTGTTGTAGTTCATGAGA+GGG | - | chr3_2:88413910-88413929 | None:intergenic | 40.0% | |
| GAATAATACAGTGGTGCTTG+AGG | - | chr3_2:88414051-88414070 | None:intergenic | 40.0% | |
| ! | GTTTGTTACAGATGTCGCAC+TGG | - | chr3_2:88413307-88413326 | None:intergenic | 45.0% |
| !! | GTTTGTTAGCATGGTGGACA+CGG | - | chr3_2:88413388-88413407 | None:intergenic | 45.0% |
| GGTTGGCAGAATTATTAGGG+TGG | - | chr3_2:88413442-88413461 | None:intergenic | 45.0% | |
| ATCACAGAGAGGGAAATGGT+TGG | - | chr3_2:88413459-88413478 | None:intergenic | 45.0% | |
| CGAGGCAAATATCACAGAGA+GGG | - | chr3_2:88413469-88413488 | None:intergenic | 45.0% | |
| ACGAGGCAAATATCACAGAG+AGG | - | chr3_2:88413470-88413489 | None:intergenic | 45.0% | |
| TCTTCATGAACAGTTGGAGG+AGG | - | chr3_2:88413799-88413818 | None:intergenic | 45.0% | |
| ATGAGAGGGAACAGAAGAAG+GGG | - | chr3_2:88413896-88413915 | None:intergenic | 45.0% | |
| CATGAGAGGGAACAGAAGAA+GGG | - | chr3_2:88413897-88413916 | None:intergenic | 45.0% | |
| TCATGAGAGGGAACAGAAGA+AGG | - | chr3_2:88413898-88413917 | None:intergenic | 45.0% | |
| CTGCTGTTGTAGTTCATGAG+AGG | - | chr3_2:88413911-88413930 | None:intergenic | 45.0% | |
| ! | GTTTGTTACAGATGTCGCAC+TGG | - | chr3_2:88413307-88413326 | None:intergenic | 45.0% |
| !! | GTTTGTTAGCATGGTGGACA+CGG | - | chr3_2:88413388-88413407 | None:intergenic | 45.0% |
| GGTTGGCAGAATTATTAGGG+TGG | - | chr3_2:88413442-88413461 | None:intergenic | 45.0% | |
| ATCACAGAGAGGGAAATGGT+TGG | - | chr3_2:88413459-88413478 | None:intergenic | 45.0% | |
| CGAGGCAAATATCACAGAGA+GGG | - | chr3_2:88413469-88413488 | None:intergenic | 45.0% | |
| ACGAGGCAAATATCACAGAG+AGG | - | chr3_2:88413470-88413489 | None:intergenic | 45.0% | |
| TCTTCATGAACAGTTGGAGG+AGG | - | chr3_2:88413799-88413818 | None:intergenic | 45.0% | |
| ATGAGAGGGAACAGAAGAAG+GGG | - | chr3_2:88413896-88413915 | None:intergenic | 45.0% | |
| CATGAGAGGGAACAGAAGAA+GGG | - | chr3_2:88413897-88413916 | None:intergenic | 45.0% | |
| TCATGAGAGGGAACAGAAGA+AGG | - | chr3_2:88413898-88413917 | None:intergenic | 45.0% | |
| CTGCTGTTGTAGTTCATGAG+AGG | - | chr3_2:88413911-88413930 | None:intergenic | 45.0% | |
| CGACATCTGTAACAAACGGC+AGG | + | chr3_2:88413310-88413329 | Msa0435290:CDS | 50.0% | |
| GGCTTCTTTATTCTGCACCG+CGG | + | chr3_2:88413331-88413350 | Msa0435290:CDS | 50.0% | |
| !! | AGGCGAGTTTGTTAGCATGG+TGG | - | chr3_2:88413394-88413413 | None:intergenic | 50.0% |
| !! | TGGAGGCGAGTTTGTTAGCA+TGG | - | chr3_2:88413397-88413416 | None:intergenic | 50.0% |
| AGAGAAGTGACGGTGTTTGG+AGG | - | chr3_2:88413414-88413433 | None:intergenic | 50.0% | |
| GAGAGAGAAGTGACGGTGTT+TGG | - | chr3_2:88413417-88413436 | None:intergenic | 50.0% | |
| GGTGGTTGAGAGAGAAGTGA+CGG | - | chr3_2:88413424-88413443 | None:intergenic | 50.0% | |
| GAACAGAAGAAGGGGAGTCA+AGG | - | chr3_2:88413888-88413907 | None:intergenic | 50.0% | |
| ! | TTCTCTAGCGAGAGCATGTG+TGG | + | chr3_2:88414015-88414034 | Msa0435290:CDS | 50.0% |
| ! | TCTCTAGCGAGAGCATGTGT+GGG | + | chr3_2:88414016-88414035 | Msa0435290:CDS | 50.0% |
| CGACATCTGTAACAAACGGC+AGG | + | chr3_2:88413310-88413329 | Msa0435290:CDS | 50.0% | |
| GGCTTCTTTATTCTGCACCG+CGG | + | chr3_2:88413331-88413350 | Msa0435290:CDS | 50.0% | |
| !! | AGGCGAGTTTGTTAGCATGG+TGG | - | chr3_2:88413394-88413413 | None:intergenic | 50.0% |
| !! | TGGAGGCGAGTTTGTTAGCA+TGG | - | chr3_2:88413397-88413416 | None:intergenic | 50.0% |
| AGAGAAGTGACGGTGTTTGG+AGG | - | chr3_2:88413414-88413433 | None:intergenic | 50.0% | |
| GAGAGAGAAGTGACGGTGTT+TGG | - | chr3_2:88413417-88413436 | None:intergenic | 50.0% | |
| GGTGGTTGAGAGAGAAGTGA+CGG | - | chr3_2:88413424-88413443 | None:intergenic | 50.0% | |
| GAACAGAAGAAGGGGAGTCA+AGG | - | chr3_2:88413888-88413907 | None:intergenic | 50.0% | |
| ! | TTCTCTAGCGAGAGCATGTG+TGG | + | chr3_2:88414015-88414034 | Msa0435290:CDS | 50.0% |
| ! | TCTCTAGCGAGAGCATGTGT+GGG | + | chr3_2:88414016-88414035 | Msa0435290:CDS | 50.0% |
| !! | TGTTAGCATGGTGGACACGG+TGG | - | chr3_2:88413385-88413404 | None:intergenic | 55.0% |
| ACAGTTGGAGGAGGAGAAGC+AGG | - | chr3_2:88413790-88413809 | None:intergenic | 55.0% | |
| !! | TGTTAGCATGGTGGACACGG+TGG | - | chr3_2:88413385-88413404 | None:intergenic | 55.0% |
| ACAGTTGGAGGAGGAGAAGC+AGG | - | chr3_2:88413790-88413809 | None:intergenic | 55.0% | |
| GCATAAGGCGGCTTCATCCG+CGG | - | chr3_2:88413351-88413370 | None:intergenic | 60.0% | |
| GTCGCAGGTGGAGCATAAGG+CGG | - | chr3_2:88413363-88413382 | None:intergenic | 60.0% | |
| GTGGTCGCAGGTGGAGCATA+AGG | - | chr3_2:88413366-88413385 | None:intergenic | 60.0% | |
| GCATAAGGCGGCTTCATCCG+CGG | - | chr3_2:88413351-88413370 | None:intergenic | 60.0% | |
| GTCGCAGGTGGAGCATAAGG+CGG | - | chr3_2:88413363-88413382 | None:intergenic | 60.0% | |
| GTGGTCGCAGGTGGAGCATA+AGG | - | chr3_2:88413366-88413385 | None:intergenic | 60.0% | |
| !! | ATGGTGGACACGGTGGTCGC+AGG | - | chr3_2:88413378-88413397 | None:intergenic | 65.0% |
| !! | ATGGTGGACACGGTGGTCGC+AGG | - | chr3_2:88413378-88413397 | None:intergenic | 65.0% |
| GTGGACACGGTGGTCGCAGG+TGG | - | chr3_2:88413375-88413394 | None:intergenic | 70.0% | |
| GTGGACACGGTGGTCGCAGG+TGG | - | chr3_2:88413375-88413394 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88413302 | 88414125 | 88413302 | ID=Msa0435290;Name=Msa0435290 |
| chr3_2 | mRNA | 88413302 | 88414125 | 88413302 | ID=Msa0435290-mRNA-1;Parent=Msa0435290;Name=Msa0435290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.5|0.33|3|0|215 |
| chr3_2 | exon | 88413302 | 88413487 | 88413302 | ID=Msa0435290-mRNA-1:exon:25987;Parent=Msa0435290-mRNA-1 |
| chr3_2 | exon | 88413652 | 88413865 | 88413652 | ID=Msa0435290-mRNA-1:exon:25988;Parent=Msa0435290-mRNA-1 |
| chr3_2 | exon | 88413881 | 88414125 | 88413881 | ID=Msa0435290-mRNA-1:exon:25989;Parent=Msa0435290-mRNA-1 |
| chr3_2 | CDS | 88413302 | 88413487 | 88413302 | ID=Msa0435290-mRNA-1:cds;Parent=Msa0435290-mRNA-1 |
| chr3_2 | CDS | 88413652 | 88413865 | 88413652 | ID=Msa0435290-mRNA-1:cds;Parent=Msa0435290-mRNA-1 |
| chr3_2 | CDS | 88413881 | 88414125 | 88413881 | ID=Msa0435290-mRNA-1:cds;Parent=Msa0435290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
