AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223540 MtrunA17_Chr4g0075171 96.267 375 8 1 1 375 1 369 0.0 729
Msa1223540 MtrunA17_Chr4g0024991 52.055 365 174 1 1 365 1 364 3.57e-112 332
Msa1223540 MtrunA17_Chr3g0142181 53.030 330 153 2 45 373 47 375 2.06e-104 312
Msa1223540 MtrunA17_Chr4g0056691 37.846 325 192 5 39 362 177 492 5.94e-65 216
Msa1223540 MtrunA17_Chr6g0462891 35.312 320 197 5 43 362 232 541 6.17e-63 212
Msa1223540 MtrunA17_Chr6g0462881 35.077 325 201 6 38 362 218 532 8.31e-63 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223540 AT1G62280.1 53.693 352 152 4 26 369 11 359 2.14e-122 358
Msa1223540 AT1G62262.1 51.397 358 152 4 19 371 13 353 2.68e-117 345
Msa1223540 AT5G24030.1 37.812 320 189 4 43 362 253 562 3.45e-67 224
Msa1223540 AT1G12480.1 35.398 339 209 4 25 362 166 495 6.49e-59 200
Msa1223540 AT4G27970.1 34.985 323 194 5 43 362 138 447 2.93e-58 197
Msa1223540 AT4G27970.6 34.985 323 194 5 43 362 138 447 2.93e-58 197
Msa1223540 AT4G27970.3 35.370 311 185 5 55 362 1 298 8.34e-58 192
Msa1223540 AT4G27970.5 35.370 311 185 5 55 362 1 298 8.34e-58 192
Msa1223540 AT5G24030.2 38.846 260 151 3 43 302 253 504 6.68e-54 186
Msa1223540 AT4G27970.4 37.008 254 146 4 43 293 138 380 7.51e-48 167
Msa1223540 AT4G27970.2 37.008 254 146 4 43 293 138 380 7.51e-48 167

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAACCTGGTTTCTGTTAT+AGG 0.207016 8_1:-88043631 Msa1223540:CDS
CTTATATAATGCAGGCTTGC+AGG 0.280775 8_1:-88043250 Msa1223540:intron
GCTAAGCCAAGGAATGTTAA+AGG 0.296789 8_1:+88043167 None:intergenic
TCAACCTGGTTTCTGTTATA+GGG 0.297612 8_1:-88043630 Msa1223540:CDS
GACCTACCTGAGAAATAAAA+AGG 0.303132 8_1:+88043347 None:intergenic
GAATGTGATGGCTTGGTGAT+TGG 0.310351 8_1:+88044120 None:intergenic
GCAATTTCAATGTATTCATT+AGG 0.313578 8_1:-88043559 Msa1223540:CDS
CTGTTGCTTATCTATTACTT+TGG 0.340533 8_1:-88043951 Msa1223540:CDS
GATGAATTTGCACATCATAT+TGG 0.345252 8_1:-88043850 Msa1223540:CDS
TCATTCCCTTTAACATTCCT+TGG 0.356219 8_1:-88043173 Msa1223540:CDS
CAAGCTAGACTTGCCATACT+TGG 0.362804 8_1:+88043430 None:intergenic
CACACGATTATGTCAATTGT+TGG 0.378332 8_1:+88044192 None:intergenic
ACAATGAATCACAAACTCTT+TGG 0.388818 8_1:-88043996 Msa1223540:CDS
AATGTGATGGCTTGGTGATT+GGG 0.406822 8_1:+88044121 None:intergenic
TGCTTCAAGCATCACCGCCT+TGG 0.430111 8_1:-88043786 Msa1223540:CDS
ATAACAGAAACCAGGTTGAC+AGG 0.456215 8_1:+88043634 None:intergenic
TATATGTATTGTGTCTGTGC+TGG 0.461043 8_1:-88043087 Msa1223540:CDS
GGTTTCTGTTATAGGGAACT+TGG 0.463993 8_1:-88043623 Msa1223540:CDS
TTGGTGCTCAAGCTTTGCTA+TGG 0.471950 8_1:-88044038 Msa1223540:CDS
GCTCAAGTAATGACAGAAAT+CGG 0.472887 8_1:-88043595 Msa1223540:CDS
TTAACTACATGTATACTCCT+TGG 0.476184 8_1:-88043825 Msa1223540:CDS
CTAAGCCAAGGAATGTTAAA+GGG 0.477768 8_1:+88043168 None:intergenic
TGACTCTGAATGTGATGGCT+TGG 0.485943 8_1:+88044113 None:intergenic
GAGCATATAAAGAAAGGATA+AGG 0.489737 8_1:+88043903 None:intergenic
GCATGGATCTTAGTTAAGAA+TGG 0.489812 8_1:+88044087 None:intergenic
TTCAATGTATTCATTAGGAA+TGG 0.492135 8_1:-88043554 Msa1223540:CDS
CAAGTATGGCAAGTCTAGCT+TGG 0.498344 8_1:-88043429 Msa1223540:CDS
CTAGCTTGGAAATCCATCTC+AGG 0.499285 8_1:-88043415 Msa1223540:CDS
GCACTTGAGCATATAAAGAA+AGG 0.500953 8_1:+88043897 None:intergenic
TGTTCAAGAAAACTATGAAA+AGG 0.514872 8_1:-88043220 Msa1223540:CDS
AGCACTAGTAGTATTGTTCG+TGG 0.515674 8_1:+88044164 None:intergenic
GTGATGGCTTGGTGATTGGG+TGG 0.520148 8_1:+88044124 None:intergenic
AGTAGCAAACCCTGTCAACC+TGG 0.530614 8_1:-88043644 Msa1223540:CDS
TTCTGTTATAGGGAACTTGG+TGG 0.536173 8_1:-88043620 Msa1223540:CDS
CATGGCCTCTGCATTAATGC+TGG 0.539503 8_1:-88043111 Msa1223540:CDS
GAATCACAAACTCTTTGGCA+TGG 0.539825 8_1:-88043991 Msa1223540:CDS
AATGGTTCACTACTGAAAAG+AGG 0.541292 8_1:-88043678 Msa1223540:CDS
TAAGCTGGTCTTAGCACTAC+AGG 0.541582 8_1:+88043472 None:intergenic
ACTATAGAATAGAATGGGTG+AGG 0.549206 8_1:-88044226 None:intergenic
GACGAGAAAAGCACCTGAGA+TGG 0.550784 8_1:+88043402 None:intergenic
TGATGGCTTGGTGATTGGGT+GGG 0.556380 8_1:+88044125 None:intergenic
CTTGCACTTTAATGCAGTGA+AGG 0.559661 8_1:-88043872 Msa1223540:CDS
TAGCAAAGCTTGAGCACCAA+AGG 0.566448 8_1:+88044041 None:intergenic
TTCTTAACTAAGATCCATGC+AGG 0.573358 8_1:-88044084 Msa1223540:CDS
TGAAAAGGCTAAACGTTACA+TGG 0.577666 8_1:-88043205 Msa1223540:CDS
TAACAGAAACCAGGTTGACA+GGG 0.582523 8_1:+88043635 None:intergenic
AAGTAATGACAGAAATCGGT+TGG 0.583657 8_1:-88043591 Msa1223540:CDS
AGTAATAGATAAGCAACAGA+AGG 0.591520 8_1:+88043955 None:intergenic
ATGAGAAGATATGAAATCCA+AGG 0.593130 8_1:+88043808 None:intergenic
CATATAAAGAAAGGATAAGG+TGG 0.598970 8_1:+88043906 None:intergenic
GGTTGTGACTCTGAATGTGA+TGG 0.605496 8_1:+88044108 None:intergenic
ATTCAGCACAAGCTAAGCCA+AGG 0.637854 8_1:+88043156 None:intergenic
TTGTGCTGAATATGCTCATG+AGG 0.642748 8_1:-88043144 Msa1223540:CDS
TATAACCAGCATTAATGCAG+AGG 0.645479 8_1:+88043106 None:intergenic
CAAGTTCTCGAAACAATCCA+AGG 0.648724 8_1:+88043769 None:intergenic
GACATCATAATTCATTTACG+AGG 0.664907 8_1:+88043002 None:intergenic
TCATGAGGTGAAAAGTAGCA+TGG 0.675843 8_1:-88043129 Msa1223540:CDS
CTTCTCAACTTTGAGCACAG+TGG 0.684753 8_1:+88043043 None:intergenic
AAAGGCTAAACGTTACATGG+TGG 0.692493 8_1:-88043202 Msa1223540:CDS
AGTTCCCTATAACAGAAACC+AGG 0.725065 8_1:+88043626 None:intergenic
GTTCTCGAAACAATCCAAGG+CGG 0.791324 8_1:+88043772 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATATATATATA+GGG + chr8_1:88043913-88043932 None:intergenic 0.0%
!! AAATATATATATATATATAT+AGG + chr8_1:88043914-88043933 None:intergenic 0.0%
!! AATATATATATATATATATA+GGG + chr8_1:88043913-88043932 None:intergenic 0.0%
!! AAATATATATATATATATAT+AGG + chr8_1:88043914-88043933 None:intergenic 0.0%
!!! ATATATATATAGGGTAATTT+TGG + chr8_1:88043904-88043923 None:intergenic 15.0%
!!! ATATATATATAGGGTAATTT+TGG + chr8_1:88043904-88043923 None:intergenic 15.0%
!! TTTTTCATTTGTGTTTCCTT+TGG - chr8_1:88043169-88043188 Msa1223540:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG - chr8_1:88043530-88043549 Msa1223540:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG - chr8_1:88043667-88043686 Msa1223540:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG - chr8_1:88043672-88043691 Msa1223540:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG - chr8_1:88043873-88043892 Msa1223540:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG - chr8_1:88044006-88044025 Msa1223540:CDS 25.0%
!! TTTTTCATTTGTGTTTCCTT+TGG - chr8_1:88043169-88043188 Msa1223540:CDS 25.0%
!! ATGTAAAACTTTTTGGACAA+TGG - chr8_1:88043530-88043549 Msa1223540:CDS 25.0%
! GCAATTTCAATGTATTCATT+AGG - chr8_1:88043667-88043686 Msa1223540:CDS 25.0%
! TTCAATGTATTCATTAGGAA+TGG - chr8_1:88043672-88043691 Msa1223540:CDS 25.0%
!!! TTTGTTCCTTTTTATTTCTC+AGG - chr8_1:88043873-88043892 Msa1223540:CDS 25.0%
! TGTTCAAGAAAACTATGAAA+AGG - chr8_1:88044006-88044025 Msa1223540:CDS 25.0%
ACAATGAATCACAAACTCTT+TGG - chr8_1:88043230-88043249 Msa1223540:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG + chr8_1:88043274-88043293 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG - chr8_1:88043275-88043294 Msa1223540:intron 30.0%
CATATAAAGAAAGGATAAGG+TGG + chr8_1:88043323-88043342 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG + chr8_1:88043326-88043345 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG - chr8_1:88043376-88043395 Msa1223540:CDS 30.0%
TTAACTACATGTATACTCCT+TGG - chr8_1:88043401-88043420 Msa1223540:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG + chr8_1:88043421-88043440 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG - chr8_1:88043523-88043542 Msa1223540:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG + chr8_1:88043772-88043791 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG - chr8_1:88043877-88043896 Msa1223540:CDS 30.0%
CCTTGATCATTACAATGATA+TGG + chr8_1:88043956-88043975 None:intergenic 30.0%
CCATATCATTGTAATGATCA+AGG - chr8_1:88043953-88043972 Msa1223540:CDS 30.0%
ACAATGAATCACAAACTCTT+TGG - chr8_1:88043230-88043249 Msa1223540:CDS 30.0%
AGTAATAGATAAGCAACAGA+AGG + chr8_1:88043274-88043293 None:intergenic 30.0%
! CTGTTGCTTATCTATTACTT+TGG - chr8_1:88043275-88043294 Msa1223540:intron 30.0%
CATATAAAGAAAGGATAAGG+TGG + chr8_1:88043323-88043342 None:intergenic 30.0%
GAGCATATAAAGAAAGGATA+AGG + chr8_1:88043326-88043345 None:intergenic 30.0%
GATGAATTTGCACATCATAT+TGG - chr8_1:88043376-88043395 Msa1223540:CDS 30.0%
TTAACTACATGTATACTCCT+TGG - chr8_1:88043401-88043420 Msa1223540:CDS 30.0%
ATGAGAAGATATGAAATCCA+AGG + chr8_1:88043421-88043440 None:intergenic 30.0%
! CTGCTTGATGTAAAACTTTT+TGG - chr8_1:88043523-88043542 Msa1223540:CDS 30.0%
GCAAAAAACAAGAAATAAGC+TGG + chr8_1:88043772-88043791 None:intergenic 30.0%
!! TTCCTTTTTATTTCTCAGGT+AGG - chr8_1:88043877-88043896 Msa1223540:CDS 30.0%
CCTTGATCATTACAATGATA+TGG + chr8_1:88043956-88043975 None:intergenic 30.0%
CCATATCATTGTAATGATCA+AGG - chr8_1:88043953-88043972 Msa1223540:CDS 30.0%
CACACGATTATGTCAATTGT+TGG + chr8_1:88043037-88043056 None:intergenic 35.0%
GCATGGATCTTAGTTAAGAA+TGG + chr8_1:88043142-88043161 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG - chr8_1:88043142-88043161 Msa1223540:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG + chr8_1:88043159-88043178 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG + chr8_1:88043332-88043351 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG - chr8_1:88043548-88043567 Msa1223540:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG - chr8_1:88043596-88043615 Msa1223540:CDS 35.0%
GCTCAAGTAATGACAGAAAT+CGG - chr8_1:88043631-88043650 Msa1223540:CDS 35.0%
AAGTAATGACAGAAATCGGT+TGG - chr8_1:88043635-88043654 Msa1223540:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG + chr8_1:88043882-88043901 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG - chr8_1:88043968-88043987 Msa1223540:CDS 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG + chr8_1:88044002-88044021 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG - chr8_1:88044021-88044040 Msa1223540:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG - chr8_1:88044053-88044072 Msa1223540:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG + chr8_1:88044061-88044080 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG + chr8_1:88044123-88044142 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG - chr8_1:88044139-88044158 Msa1223540:CDS 35.0%
CACACGATTATGTCAATTGT+TGG + chr8_1:88043037-88043056 None:intergenic 35.0%
GCATGGATCTTAGTTAAGAA+TGG + chr8_1:88043142-88043161 None:intergenic 35.0%
TTCTTAACTAAGATCCATGC+AGG - chr8_1:88043142-88043161 Msa1223540:CDS 35.0%
AAATGAAAAAGTAGCCTGCA+TGG + chr8_1:88043159-88043178 None:intergenic 35.0%
GCACTTGAGCATATAAAGAA+AGG + chr8_1:88043332-88043351 None:intergenic 35.0%
AATGGTTCACTACTGAAAAG+AGG - chr8_1:88043548-88043567 Msa1223540:CDS 35.0%
TCAACCTGGTTTCTGTTATA+GGG - chr8_1:88043596-88043615 Msa1223540:CDS 35.0%
GCTCAAGTAATGACAGAAAT+CGG - chr8_1:88043631-88043650 Msa1223540:CDS 35.0%
AAGTAATGACAGAAATCGGT+TGG - chr8_1:88043635-88043654 Msa1223540:CDS 35.0%
GACCTACCTGAGAAATAAAA+AGG + chr8_1:88043882-88043901 None:intergenic 35.0%
GATCAAGGCTTATATAATGC+AGG - chr8_1:88043968-88043987 Msa1223540:CDS 35.0%
! ATAGTTTTCTTGAACAGTGC+TGG + chr8_1:88044002-88044021 None:intergenic 35.0%
TGAAAAGGCTAAACGTTACA+TGG - chr8_1:88044021-88044040 Msa1223540:CDS 35.0%
TCATTCCCTTTAACATTCCT+TGG - chr8_1:88044053-88044072 Msa1223540:CDS 35.0%
CTAAGCCAAGGAATGTTAAA+GGG + chr8_1:88044061-88044080 None:intergenic 35.0%
TATAACCAGCATTAATGCAG+AGG + chr8_1:88044123-88044142 None:intergenic 35.0%
TATATGTATTGTGTCTGTGC+TGG - chr8_1:88044139-88044158 Msa1223540:CDS 35.0%
AGCACTAGTAGTATTGTTCG+TGG + chr8_1:88043065-88043084 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG + chr8_1:88043108-88043127 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG - chr8_1:88043235-88043254 Msa1223540:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG - chr8_1:88043354-88043373 Msa1223540:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG + chr8_1:88043460-88043479 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG + chr8_1:88043594-88043613 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG + chr8_1:88043595-88043614 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG - chr8_1:88043595-88043614 Msa1223540:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG + chr8_1:88043603-88043622 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG - chr8_1:88043603-88043622 Msa1223540:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG - chr8_1:88043606-88043625 Msa1223540:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG - chr8_1:88043783-88043802 Msa1223540:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG - chr8_1:88043976-88043995 Msa1223540:CDS 40.0%
AAAGGCTAAACGTTACATGG+TGG - chr8_1:88044024-88044043 Msa1223540:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG + chr8_1:88044062-88044081 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG - chr8_1:88044082-88044101 Msa1223540:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG - chr8_1:88044097-88044116 Msa1223540:CDS 40.0%
AGCACTAGTAGTATTGTTCG+TGG + chr8_1:88043065-88043084 None:intergenic 40.0%
!! AATGTGATGGCTTGGTGATT+GGG + chr8_1:88043108-88043127 None:intergenic 40.0%
GAATCACAAACTCTTTGGCA+TGG - chr8_1:88043235-88043254 Msa1223540:CDS 40.0%
CTTGCACTTTAATGCAGTGA+AGG - chr8_1:88043354-88043373 Msa1223540:CDS 40.0%
CAAGTTCTCGAAACAATCCA+AGG + chr8_1:88043460-88043479 None:intergenic 40.0%
! TAACAGAAACCAGGTTGACA+GGG + chr8_1:88043594-88043613 None:intergenic 40.0%
! ATAACAGAAACCAGGTTGAC+AGG + chr8_1:88043595-88043614 None:intergenic 40.0%
GTCAACCTGGTTTCTGTTAT+AGG - chr8_1:88043595-88043614 Msa1223540:CDS 40.0%
AGTTCCCTATAACAGAAACC+AGG + chr8_1:88043603-88043622 None:intergenic 40.0%
GGTTTCTGTTATAGGGAACT+TGG - chr8_1:88043603-88043622 Msa1223540:CDS 40.0%
TTCTGTTATAGGGAACTTGG+TGG - chr8_1:88043606-88043625 Msa1223540:CDS 40.0%
!!! GTTTTTTGCTGCACCAAGTA+TGG - chr8_1:88043783-88043802 Msa1223540:CDS 40.0%
CTTATATAATGCAGGCTTGC+AGG - chr8_1:88043976-88043995 Msa1223540:CDS 40.0%
AAAGGCTAAACGTTACATGG+TGG - chr8_1:88044024-88044043 Msa1223540:CDS 40.0%
GCTAAGCCAAGGAATGTTAA+AGG + chr8_1:88044062-88044081 None:intergenic 40.0%
TTGTGCTGAATATGCTCATG+AGG - chr8_1:88044082-88044101 Msa1223540:CDS 40.0%
TCATGAGGTGAAAAGTAGCA+TGG - chr8_1:88044097-88044116 Msa1223540:CDS 40.0%
!! GAATGTGATGGCTTGGTGAT+TGG + chr8_1:88043109-88043128 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG + chr8_1:88043116-88043135 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG + chr8_1:88043121-88043140 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG + chr8_1:88043188-88043207 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG - chr8_1:88043188-88043207 Msa1223540:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG + chr8_1:88043457-88043476 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG + chr8_1:88043757-88043776 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG + chr8_1:88043799-88043818 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG - chr8_1:88043797-88043816 Msa1223540:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG - chr8_1:88043811-88043830 Msa1223540:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG + chr8_1:88044073-88044092 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG + chr8_1:88044186-88044205 None:intergenic 45.0%
!! GAATGTGATGGCTTGGTGAT+TGG + chr8_1:88043109-88043128 None:intergenic 45.0%
TGACTCTGAATGTGATGGCT+TGG + chr8_1:88043116-88043135 None:intergenic 45.0%
GGTTGTGACTCTGAATGTGA+TGG + chr8_1:88043121-88043140 None:intergenic 45.0%
TAGCAAAGCTTGAGCACCAA+AGG + chr8_1:88043188-88043207 None:intergenic 45.0%
! TTGGTGCTCAAGCTTTGCTA+TGG - chr8_1:88043188-88043207 Msa1223540:CDS 45.0%
GTTCTCGAAACAATCCAAGG+CGG + chr8_1:88043457-88043476 None:intergenic 45.0%
!! TAAGCTGGTCTTAGCACTAC+AGG + chr8_1:88043757-88043776 None:intergenic 45.0%
CAAGCTAGACTTGCCATACT+TGG + chr8_1:88043799-88043818 None:intergenic 45.0%
CAAGTATGGCAAGTCTAGCT+TGG - chr8_1:88043797-88043816 Msa1223540:CDS 45.0%
CTAGCTTGGAAATCCATCTC+AGG - chr8_1:88043811-88043830 Msa1223540:CDS 45.0%
ATTCAGCACAAGCTAAGCCA+AGG + chr8_1:88044073-88044092 None:intergenic 45.0%
CTTCTCAACTTTGAGCACAG+TGG + chr8_1:88044186-88044205 None:intergenic 45.0%
!! TGATGGCTTGGTGATTGGGT+GGG + chr8_1:88043104-88043123 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG - chr8_1:88043582-88043601 Msa1223540:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG + chr8_1:88043827-88043846 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG - chr8_1:88044115-88044134 Msa1223540:CDS 50.0%
!! TGATGGCTTGGTGATTGGGT+GGG + chr8_1:88043104-88043123 None:intergenic 50.0%
AGTAGCAAACCCTGTCAACC+TGG - chr8_1:88043582-88043601 Msa1223540:CDS 50.0%
!! GACGAGAAAAGCACCTGAGA+TGG + chr8_1:88043827-88043846 None:intergenic 50.0%
CATGGCCTCTGCATTAATGC+TGG - chr8_1:88044115-88044134 Msa1223540:CDS 50.0%
!! GTGATGGCTTGGTGATTGGG+TGG + chr8_1:88043105-88043124 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG - chr8_1:88043440-88043459 Msa1223540:CDS 55.0%
!! GTGATGGCTTGGTGATTGGG+TGG + chr8_1:88043105-88043124 None:intergenic 55.0%
TGCTTCAAGCATCACCGCCT+TGG - chr8_1:88043440-88043459 Msa1223540:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88043013 88044235 88043013 ID=Msa1223540;Name=Msa1223540
chr8_1 mRNA 88043013 88044235 88043013 ID=Msa1223540-mRNA-1;Parent=Msa1223540;Name=Msa1223540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|375
chr8_1 exon 88043354 88044235 88043354 ID=Msa1223540-mRNA-1:exon:31937;Parent=Msa1223540-mRNA-1
chr8_1 exon 88043013 88043258 88043013 ID=Msa1223540-mRNA-1:exon:31936;Parent=Msa1223540-mRNA-1
chr8_1 CDS 88043354 88044235 88043354 ID=Msa1223540-mRNA-1:cds;Parent=Msa1223540-mRNA-1
chr8_1 CDS 88043013 88043258 88043013 ID=Msa1223540-mRNA-1:cds;Parent=Msa1223540-mRNA-1
Gene Sequence

>Msa1223540

ATGGGTGAGGTTGCGATCAAGCCAACAATTGACATAATCGTGTGTGCTTCCACGAACAATACTACTAGTGCTAAAAACATTGATAATTCCCACCCAATCACCAAGCCATCACATTCAGAGTCACAACCATTCTTAACTAAGATCCATGCAGGCTACTTTTTCATTTGTGTTTCCTTTGGTGCTCAAGCTTTGCTATGGAAGAGTTTAAGTGAACATAACAATGAATCACAAACTCTTTGGCATGGATTTAATTTCATGCCTTCTGTTGCTTATCTATTACTTTGGTGTCTTGCAGTACTCATTGCAGCCACCTTATCCTTTCTTTATATGCTCAAGTGCATCTTGCACTTTAATGCAGTGAAGGATGAATTTGCACATCATATTGGAGTTAACTACATGTATACTCCTTGGATTTCATATCTTCTCATGCTTCAAGCATCACCGCCTTGGATTGTTTCGAGAACTTGTTACTACGAGTTTCTTTGTCTAGCATTTTCTTTTGTAATATTTCTGCTTGATGTAAAACTTTTTGGACAATGGTTCACTACTGAAAAGAGGTTTCTGTCAGTAGTAGCAAACCCTGTCAACCTGGTTTCTGTTATAGGGAACTTGGTGGCTGCTCAAGTAATGACAGAAATCGGTTGGAACGAGATTGCAATTTCAATGTATTCATTAGGAATGGTACATTATTTGATTCTATTTGTGACGCTGTATCAGCGTCTAACAAGTAGTAATCAGTTTCCTGTAGTGCTAAGACCAGCTTATTTCTTGTTTTTTGCTGCACCAAGTATGGCAAGTCTAGCTTGGAAATCCATCTCAGGTGCTTTTCTCGTCTCATCAAAGATGCTGTTCTTTCTCTCTTTGTTCCTTTTTATTTCTCAGGCTTGCAGGCCAGCACTGTTCAAGAAAACTATGAAAAGGCTAAACGTTACATGGTGGATTTACTCATTCCCTTTAACATTCCTTGGCTTAGCTTGTGCTGAATATGCTCATGAGGTGAAAAGTAGCATGGCCTCTGCATTAATGCTGGTTATATGTATTGTGTCTGTGCTGGTTTTTGTCTTTTTGATGCTAACCACTGTGCTCAAAGTTGAGAAGTTGCTGCATAAAAAAGCTCCTCGTAAATGA

Protein sequence

>Msa1223540

MGEVAIKPTIDIIVCASTNNTTSAKNIDNSHPITKPSHSESQPFLTKIHAGYFFICVSFGAQALLWKSLSEHNNESQTLWHGFNFMPSVAYLLLWCLAVLIAATLSFLYMLKCILHFNAVKDEFAHHIGVNYMYTPWISYLLMLQASPPWIVSRTCYYEFLCLAFSFVIFLLDVKLFGQWFTTEKRFLSVVANPVNLVSVIGNLVAAQVMTEIGWNEIAISMYSLGMVHYLILFVTLYQRLTSSNQFPVVLRPAYFLFFAAPSMASLAWKSISGAFLVSSKMLFFLSLFLFISQACRPALFKKTMKRLNVTWWIYSFPLTFLGLACAEYAHEVKSSMASALMLVICIVSVLVFVFLMLTTVLKVEKLLHKKAPRK*