AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133440 MtrunA17_Chr1g0208921 94.509 346 10 4 1 340 1 343 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133440 AT2G01110.1 73.770 305 66 3 36 340 50 340 1.64e-151 429

Find 106 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTCGTGGTGCAGGTTTC+TGG 0.175531 7_3:-86928516 Msa1133440:intron
CTTCTAGCAGCACCATTATT+AGG 0.229476 7_3:-86927347 Msa1133440:CDS
AGGAGTTGGAGGAAGCATTT+TGG 0.229964 7_3:-86929184 Msa1133440:CDS
GCCAAGGCCTGGTGGAATTT+AGG 0.240581 7_3:+86927123 None:intergenic
AGAATCTTTATATCAGTTCT+AGG 0.249354 7_3:-86929204 Msa1133440:CDS
ACCGATTATACAACTTCTAT+TGG 0.263487 7_3:-86927486 Msa1133440:CDS
TGCTTAAACTGAATTTCTTT+TGG 0.275876 7_3:+86927261 None:intergenic
TTCCACCAGGCCTTGGCATT+TGG 0.296857 7_3:-86927117 Msa1133440:three_prime_UTR
CAGTACAGGCTTGTCTTTCC+AGG 0.298487 7_3:-86928232 Msa1133440:intron
CGTTAGACCTGGAATTATAA+AGG 0.303877 7_3:+86928443 None:intergenic
GGACAACTTGGATTGGTTAC+TGG 0.310168 7_3:-86927464 Msa1133440:CDS
AGAAGAAATAATAAGAGTTT+TGG 0.312117 7_3:-86930066 Msa1133440:CDS
TCAATACTTTGAGTTTGTTC+TGG 0.314656 7_3:-86928265 Msa1133440:CDS
ATGAATATCCTTCCTCAGTT+CGG 0.317891 7_3:-86930144 Msa1133440:CDS
TGGATATTGTGGCCTTCTCT+TGG 0.323792 7_3:-86928496 Msa1133440:CDS
CCCACTCAACAACCCCTATT+CGG 0.325105 7_3:-86930110 Msa1133440:CDS
ATCATAGCCTTTATAATTCC+AGG 0.326206 7_3:-86928450 Msa1133440:CDS
GCATGGATGGTCAAACTTGC+TGG 0.332429 7_3:-86927308 Msa1133440:CDS
CGGAATAACCTTCTCCTACT+TGG 0.346691 7_3:-86928361 Msa1133440:CDS
AGAGGGAAGCTGACCCGAAT+AGG 0.356442 7_3:+86930096 None:intergenic
AACCTTCTCCTACTTGGTTC+TGG 0.358897 7_3:-86928355 Msa1133440:CDS
TGAATATCCTTCCTCAGTTC+GGG 0.363168 7_3:-86930143 Msa1133440:CDS
TCCCATGCCGTGTTTATGTT+TGG 0.370287 7_3:+86930188 None:intergenic
TTTATATCAGTTCTAGGAGT+TGG 0.372808 7_3:-86929198 Msa1133440:CDS
TCCTAAATTCCACCAGGCCT+TGG 0.374237 7_3:-86927124 Msa1133440:three_prime_UTR
TTCTTTGTCGAAGCTCTTCA+AGG 0.382875 7_3:+86929223 None:intergenic
GAGGGAAGCTGACCCGAATA+GGG 0.387231 7_3:+86930097 None:intergenic
CAAGTAGGAGAAGGTTATTC+CGG 0.387764 7_3:+86928362 None:intergenic
TCAGGAAGAAGCTCTTTATC+AGG 0.389696 7_3:+86929273 None:intergenic
CCCAATAGAAGTTGTATAAT+CGG 0.391969 7_3:+86927485 None:intergenic
CCGATTATACAACTTCTATT+GGG 0.394706 7_3:-86927485 Msa1133440:CDS
ACATAAACACGGCATGGGAT+TGG 0.398979 7_3:-86930184 Msa1133440:exon
TAGGGGTTGTTGAGTGGGTT+CGG 0.400683 7_3:+86930115 None:intergenic
GGTTCTCGTTAGATACGATT+TGG 0.401877 7_3:+86930209 None:intergenic
CATAAACACGGCATGGGATT+GGG 0.404732 7_3:-86930183 Msa1133440:exon
GGATATTGTGGCCTTCTCTT+GGG 0.412223 7_3:-86928495 Msa1133440:CDS
CAACTTCTATTGGGACAACT+TGG 0.415318 7_3:-86927476 Msa1133440:CDS
ATGATTTCATAGAGAATGAT+AGG 0.415949 7_3:+86928468 None:intergenic
ATGCTCATTTCTTTATCATC+AGG 0.420227 7_3:+86929255 None:intergenic
CCACTCAACAACCCCTATTC+GGG 0.424261 7_3:-86930109 Msa1133440:CDS
TAGTACTAAGCTGTTGTTGT+TGG 0.434035 7_3:+86930001 None:intergenic
CTGGTTCTTATGTTCAGTAC+AGG 0.435069 7_3:-86928246 Msa1133440:CDS
CATACCGGGTCTTTCTTCAA+TGG 0.442015 7_3:+86929957 None:intergenic
TCGTTAGATACGATTTGGTT+TGG 0.442344 7_3:+86930214 None:intergenic
AGATTTCTTCAGTTAGCTCC+TGG 0.442494 7_3:-86929096 Msa1133440:CDS
GTCTTTACCTAGGTGGTGCA+TGG 0.454573 7_3:-86927325 Msa1133440:CDS
GAGACCGGATGCTATCAGTT+TGG 0.466801 7_3:-86927442 Msa1133440:CDS
CCTAGGTAAAGACCTAATAA+TGG 0.468369 7_3:+86927335 None:intergenic
CACCAGGCCTTGGCATTTGG+AGG 0.472494 7_3:-86927114 None:intergenic
TAAATCAATTAATAGAATAC+AGG 0.474864 7_3:+86927172 None:intergenic
CTGACACCCTCTGATTGAAC+AGG 0.476792 7_3:+86929117 None:intergenic
ACTGATGAGCCTAAAACAAT+TGG 0.477239 7_3:+86928396 None:intergenic
AACTGAGGAAGGATATTCAT+AGG 0.479717 7_3:+86930147 None:intergenic
TTCTTTGTCAATTATGCTGA+AGG 0.481146 7_3:-86928315 Msa1133440:CDS
TTACCTAGGTGGTGCATGGA+TGG 0.481523 7_3:-86927321 Msa1133440:CDS
CTTTCAGCTTTCGTTAGACC+TGG 0.483102 7_3:+86928432 None:intergenic
TCTATTGGGACAACTTGGAT+TGG 0.484052 7_3:-86927471 Msa1133440:CDS
ACAAAGAAATTTAATGCTGC+GGG 0.490001 7_3:+86928330 None:intergenic
CATCATGTATAGTGATAAGT+AGG 0.492824 7_3:-86930300 Msa1133440:five_prime_UTR
AGTACTACTTCAACTAGGCT+TGG 0.499566 7_3:-86929985 Msa1133440:CDS
ATATCAGTTCTAGGAGTTGG+AGG 0.501945 7_3:-86929195 Msa1133440:CDS
CCGAATAGGGGTTGTTGAGT+GGG 0.511640 7_3:+86930110 None:intergenic
CCCGAATAGGGGTTGTTGAG+TGG 0.512048 7_3:+86930109 None:intergenic
TACCTCCAAATGCCAAGGCC+TGG 0.522561 7_3:+86927112 None:intergenic
AAACTCAAAGTATTGATCAA+TGG 0.524905 7_3:+86928272 None:intergenic
GACAAAGAAATTTAATGCTG+CGG 0.531903 7_3:+86928329 None:intergenic
ACCTCCAAACTGATAGCATC+CGG 0.541278 7_3:+86927438 None:intergenic
ATACAGGAAGAGTAATGCTC+TGG 0.541662 7_3:+86927188 None:intergenic
AACCAAACATAAACACGGCA+TGG 0.543708 7_3:-86930190 Msa1133440:exon
TTGGATTGGTTACTGGAGAC+CGG 0.547880 7_3:-86927457 Msa1133440:CDS
TGGTATAGGTGAAGAAACAT+TGG 0.554885 7_3:-86929346 Msa1133440:intron
GTCTAACGAAAGCTGAAAGA+AGG 0.555459 7_3:-86928428 Msa1133440:CDS
TGAAGCTCCTGTTCAATCAG+AGG 0.565387 7_3:-86929124 Msa1133440:CDS
GTTTGGAGGTACGTTGTAGT+CGG 0.572084 7_3:-86927425 Msa1133440:CDS
CTCCAAATGCCAAGGCCTGG+TGG 0.584016 7_3:+86927115 None:intergenic
CTGTCTGAGTTCATCATCAA+CGG 0.587352 7_3:+86930026 None:intergenic
ACCGGATGCTATCAGTTTGG+AGG 0.588400 7_3:-86927439 Msa1133440:CDS
GCTAGAAGAACTTGAGTGAG+AGG 0.588816 7_3:+86927362 None:intergenic
GTGCAGGTTTCTGGATATTG+TGG 0.589310 7_3:-86928507 Msa1133440:intron
TGATAGGACTTCCCAAGAGA+AGG 0.590331 7_3:+86928484 None:intergenic
CGTTGTAGTCGGAGCAGTAG+TGG 0.590777 7_3:-86927414 Msa1133440:CDS
CATGGATGGTCAAACTTGCT+GGG 0.591514 7_3:-86927307 Msa1133440:CDS
GGAGCAACCCGAACTGAGGA+AGG 0.591542 7_3:+86930136 None:intergenic
TATTTCTTCTTCGACAGAGA+GGG 0.592538 7_3:+86930079 None:intergenic
ACCGGGTCTTTCTTCAATGG+CGG 0.601351 7_3:+86929960 None:intergenic
ACCAAACATAAACACGGCAT+GGG 0.602653 7_3:-86930189 Msa1133440:exon
AGGAAGAGTAATGCTCTGGT+AGG 0.605861 7_3:+86927192 None:intergenic
CCATTATTAGGTCTTTACCT+AGG 0.610016 7_3:-86927335 Msa1133440:CDS
GAAGCTCCTGTTCAATCAGA+GGG 0.614527 7_3:-86929123 Msa1133440:CDS
AGCTTAGTACTACTTCAACT+AGG 0.621939 7_3:-86929990 Msa1133440:CDS
TTATTAGGTCTTTACCTAGG+TGG 0.622151 7_3:-86927332 Msa1133440:CDS
AGTTATTCCTAAATTCCACC+AGG 0.623589 7_3:-86927130 Msa1133440:three_prime_UTR
AGGAATACCTCCAAATGCCA+AGG 0.623816 7_3:+86927107 None:intergenic
AACTTGAGTGAGAGGATCTG+TGG 0.626725 7_3:+86927370 None:intergenic
TACCAGAACCAAGTAGGAGA+AGG 0.629321 7_3:+86928353 None:intergenic
AAGGATATTCATAGGAACAG+TGG 0.630446 7_3:+86930155 None:intergenic
TCCGCCATTGAAGAAAGACC+CGG 0.632868 7_3:-86929961 Msa1133440:intron
AGGGAAGCTGACCCGAATAG+GGG 0.633526 7_3:+86930098 None:intergenic
TGACCATCCATGCACCACCT+AGG 0.640535 7_3:+86927318 None:intergenic
TTATTTCTTCTTCGACAGAG+AGG 0.655544 7_3:+86930078 None:intergenic
TGCGGGTACCAGAACCAAGT+AGG 0.676319 7_3:+86928347 None:intergenic
GTTCGGAGCAACCCGAACTG+AGG 0.682822 7_3:+86930132 None:intergenic
GATATTCATAGGAACAGTGG+TGG 0.683366 7_3:+86930158 None:intergenic
TGAGTGAGAGGATCTGTGGA+TGG 0.685947 7_3:+86927374 None:intergenic
ACGAGAACCAAACATAAACA+CGG 0.707832 7_3:-86930195 Msa1133440:five_prime_UTR
AAGGTGCTGTTGAATCACTG+TGG 0.719291 7_3:-86928296 Msa1133440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAGTTTGTTTTTATT+GGG - chr7_3:86928583-86928602 Msa1133440:intron 10.0%
!!! TTTTAGTTACTATATATTAT+AGG + chr7_3:86929663-86929682 None:intergenic 10.0%
!!! CTATTTAGTATTTTCATATA+AGG - chr7_3:86927716-86927735 Msa1133440:intron 15.0%
!!! TAAAAATTTTACCTTTAAAG+TGG + chr7_3:86928374-86928393 None:intergenic 15.0%
!! CAATAAAAACAAACTAATTA+TGG + chr7_3:86928584-86928603 None:intergenic 15.0%
!!! CATAATTAGTTTGTTTTTAT+TGG - chr7_3:86928582-86928601 Msa1133440:intron 15.0%
!!! TAATTAGTTTGTTTTTATTG+GGG - chr7_3:86928584-86928603 Msa1133440:intron 15.0%
!! TTACATTCATAATTAATCAT+TGG - chr7_3:86928718-86928737 Msa1133440:intron 15.0%
!! TGTATTCTATATTTATCATT+GGG + chr7_3:86929322-86929341 None:intergenic 15.0%
!! TTGTATTCTATATTTATCAT+TGG + chr7_3:86929323-86929342 None:intergenic 15.0%
!! TAAATCAATTAATAGAATAC+AGG + chr7_3:86930261-86930280 None:intergenic 15.0%
!!! AGAAGAAATAATAAGAGTTT+TGG - chr7_3:86927364-86927383 Msa1133440:CDS 20.0%
!! AATGAAGTGAAGAAAAAATT+TGG + chr7_3:86927529-86927548 None:intergenic 20.0%
!!! AAATTTTTTCTTCACTTCAT+TGG - chr7_3:86927528-86927547 Msa1133440:intron 20.0%
!!! AGAAACATTGGAAAATTTTA+AGG - chr7_3:86928096-86928115 Msa1133440:intron 20.0%
!!! ATTTTTACTCAAAATATCTC+CGG - chr7_3:86928387-86928406 Msa1133440:CDS 20.0%
!!! GAATGTAATATTTTATTTCC+TGG - chr7_3:86928446-86928465 Msa1133440:CDS 20.0%
!!! AAATTTGACTTCTCTAAAAT+AGG + chr7_3:86928787-86928806 None:intergenic 20.0%
!!! ATTTTAGAGAAGTCAAATTT+AGG - chr7_3:86928787-86928806 Msa1133440:intron 20.0%
!!! TTCCTTTCTTTTTGAATATA+TGG - chr7_3:86929245-86929264 Msa1133440:CDS 20.0%
!! TACCATATATTCAAAAAGAA+AGG + chr7_3:86929250-86929269 None:intergenic 20.0%
!! TAGTAACTAAAAAAAAGACT+TGG - chr7_3:86929671-86929690 Msa1133440:intron 20.0%
!!! AATTTCTTTTGGTAATATGT+GGG + chr7_3:86930161-86930180 None:intergenic 20.0%
!!! ATTTTTATGTAAATTCACAC+AGG - chr7_3:86930193-86930212 Msa1133440:exon 20.0%
! ATTATTTGAGCTTATATCCT+TGG + chr7_3:86927955-86927974 None:intergenic 25.0%
!!! TTGGAAAATTTTAAGGAAGA+TGG - chr7_3:86928103-86928122 Msa1133440:intron 25.0%
! AGAATCTTTATATCAGTTCT+AGG - chr7_3:86928226-86928245 Msa1133440:intron 25.0%
!! CTTTGCATTTTCAAAAGATT+TGG - chr7_3:86928273-86928292 Msa1133440:CDS 25.0%
!! ATTTTTCTTCACCACTTTAA+AGG - chr7_3:86928360-86928379 Msa1133440:CDS 25.0%
!! TTTTTACTCAAAATATCTCC+GGG - chr7_3:86928388-86928407 Msa1133440:CDS 25.0%
! AAACTAATTATGGCAGAAAA+TGG + chr7_3:86928574-86928593 None:intergenic 25.0%
! AGTTTGATCATGATTTAGAT+GGG + chr7_3:86928883-86928902 None:intergenic 25.0%
! TAGTTTGATCATGATTTAGA+TGG + chr7_3:86928884-86928903 None:intergenic 25.0%
! TGATCAAACTAATATTGTTG+TGG - chr7_3:86928893-86928912 Msa1133440:intron 25.0%
! ATGATTTCATAGAGAATGAT+AGG + chr7_3:86928965-86928984 None:intergenic 25.0%
!!! AAACTCAAAGTATTGATCAA+TGG + chr7_3:86929161-86929180 None:intergenic 25.0%
! TATATTTATCATTGGGTCAA+TGG + chr7_3:86929315-86929334 None:intergenic 25.0%
! ATTCCTAACAGAGATATATT+GGG + chr7_3:86929428-86929447 None:intergenic 25.0%
! AATTCCTAACAGAGATATAT+TGG + chr7_3:86929429-86929448 None:intergenic 25.0%
!!! CTTGAAAGTTTTAAATGACT+TGG - chr7_3:86929588-86929607 Msa1133440:intron 25.0%
!!! GAATTTCTTTTGGTAATATG+TGG + chr7_3:86930162-86930181 None:intergenic 25.0%
!! TGCTTAAACTGAATTTCTTT+TGG + chr7_3:86930172-86930191 None:intergenic 25.0%
CATCATGTATAGTGATAAGT+AGG - chr7_3:86927130-86927149 Msa1133440:three_prime_UTR 30.0%
!! TGATATTTTTGCACTTCACA+TGG + chr7_3:86927168-86927187 None:intergenic 30.0%
ATGTGAAGTGCAAAAATATC+AGG - chr7_3:86927167-86927186 Msa1133440:three_prime_UTR 30.0%
TTTGGTGAATTGAGAGAAAA+TGG + chr7_3:86927511-86927530 None:intergenic 30.0%
GTAAACCTTGTGAAAATAAG+CGG - chr7_3:86927765-86927784 Msa1133440:intron 30.0%
TAAACCTTGTGAAAATAAGC+GGG - chr7_3:86927766-86927785 Msa1133440:intron 30.0%
! AGCTTATTTGAGTTATGTAC+TGG + chr7_3:86927857-86927876 None:intergenic 30.0%
CTCAAATAAGCTAATTCGAA+CGG - chr7_3:86927865-86927884 Msa1133440:intron 30.0%
TCAAATAAGCTAATTCGAAC+GGG - chr7_3:86927866-86927885 Msa1133440:intron 30.0%
TCATTAACTAAGAGTCTGTT+TGG + chr7_3:86927984-86928003 None:intergenic 30.0%
GACAATAAAGATATGCTTGA+TGG - chr7_3:86928064-86928083 Msa1133440:intron 30.0%
! AAAGATATGCTTGATGGTAT+AGG - chr7_3:86928070-86928089 Msa1133440:intron 30.0%
ATGCTCATTTCTTTATCATC+AGG + chr7_3:86928178-86928197 None:intergenic 30.0%
!! TTTATATCAGTTCTAGGAGT+TGG - chr7_3:86928232-86928251 Msa1133440:intron 30.0%
!!! CATTTTCAAAAGATTTGGTG+AGG - chr7_3:86928278-86928297 Msa1133440:CDS 30.0%
! TTTTACTCAAAATATCTCCG+GGG - chr7_3:86928389-86928408 Msa1133440:CDS 30.0%
TATTACATTCACAACTCACT+AGG + chr7_3:86928436-86928455 None:intergenic 30.0%
GCATTTCATGTGAAGTTTAA+AGG - chr7_3:86928472-86928491 Msa1133440:CDS 30.0%
! TCTAAAATAGGTAGTTGGTA+AGG + chr7_3:86928775-86928794 None:intergenic 30.0%
!! ACTTCTCTAAAATAGGTAGT+TGG + chr7_3:86928780-86928799 None:intergenic 30.0%
TTAGAGAAGTCAAATTTAGG+AGG - chr7_3:86928790-86928809 Msa1133440:intron 30.0%
TAGAGAAGTCAAATTTAGGA+GGG - chr7_3:86928791-86928810 Msa1133440:intron 30.0%
GTAATGGTTATATCACACAA+AGG + chr7_3:86928849-86928868 None:intergenic 30.0%
ATCATAGCCTTTATAATTCC+AGG - chr7_3:86928980-86928999 Msa1133440:intron 30.0%
! AAAGCTGAAAGAAGGTTTTT+AGG - chr7_3:86929010-86929029 Msa1133440:intron 30.0%
! AAGCTGAAAGAAGGTTTTTA+GGG - chr7_3:86929011-86929030 Msa1133440:intron 30.0%
!!! TTTTTAGGGCCAATTGTTTT+AGG - chr7_3:86929025-86929044 Msa1133440:intron 30.0%
ACAAAGAAATTTAATGCTGC+GGG + chr7_3:86929103-86929122 None:intergenic 30.0%
GACAAAGAAATTTAATGCTG+CGG + chr7_3:86929104-86929123 None:intergenic 30.0%
TTCTTTGTCAATTATGCTGA+AGG - chr7_3:86929115-86929134 Msa1133440:CDS 30.0%
! TCAATACTTTGAGTTTGTTC+TGG - chr7_3:86929165-86929184 Msa1133440:CDS 30.0%
! AAAGAAAGGAAGTACAAAAC+AGG + chr7_3:86929236-86929255 None:intergenic 30.0%
TATCCCAATATATCTCTGTT+AGG - chr7_3:86929422-86929441 Msa1133440:intron 30.0%
AATGTTTGTAATCGATCATC+TGG - chr7_3:86929510-86929529 Msa1133440:intron 30.0%
TATTACTTGATATGAGACGT+GGG + chr7_3:86929561-86929580 None:intergenic 30.0%
ATATTACTTGATATGAGACG+TGG + chr7_3:86929562-86929581 None:intergenic 30.0%
! CTTTCTTTTCTTCCTAAGTT+TGG - chr7_3:86929885-86929904 Msa1133440:intron 30.0%
ACCGATTATACAACTTCTAT+TGG - chr7_3:86929944-86929963 Msa1133440:intron 30.0%
CCCAATAGAAGTTGTATAAT+CGG + chr7_3:86929948-86929967 None:intergenic 30.0%
CCGATTATACAACTTCTATT+GGG - chr7_3:86929945-86929964 Msa1133440:intron 30.0%
!! TCGTTAGATACGATTTGGTT+TGG + chr7_3:86927219-86927238 None:intergenic 35.0%
ACGAGAACCAAACATAAACA+CGG - chr7_3:86927235-86927254 Msa1133440:three_prime_UTR 35.0%
AAGGATATTCATAGGAACAG+TGG + chr7_3:86927278-86927297 None:intergenic 35.0%
AACTGAGGAAGGATATTCAT+AGG + chr7_3:86927286-86927305 None:intergenic 35.0%
ATGAATATCCTTCCTCAGTT+CGG - chr7_3:86927286-86927305 Msa1133440:exon 35.0%
TATTTCTTCTTCGACAGAGA+GGG + chr7_3:86927354-86927373 None:intergenic 35.0%
! TTATTTCTTCTTCGACAGAG+AGG + chr7_3:86927355-86927374 None:intergenic 35.0%
TAGTACTAAGCTGTTGTTGT+TGG + chr7_3:86927432-86927451 None:intergenic 35.0%
AGCTTAGTACTACTTCAACT+AGG - chr7_3:86927440-86927459 Msa1133440:CDS 35.0%
! TGGATTTTGCTCTAACATAC+CGG + chr7_3:86927491-86927510 None:intergenic 35.0%
!! TTCACTTCATTGGTCTTGTT+TGG - chr7_3:86927538-86927557 Msa1133440:intron 35.0%
! ACTGCAGTTTAGAATAGCTT+AGG + chr7_3:86927629-86927648 None:intergenic 35.0%
TTGGATAAGCACTTATGAGA+CGG + chr7_3:86927936-86927955 None:intergenic 35.0%
TGGTATAGGTGAAGAAACAT+TGG - chr7_3:86928084-86928103 Msa1133440:intron 35.0%
TGGTAAGGTGAGAAAATCAA+AGG + chr7_3:86928760-86928779 None:intergenic 35.0%
GGTTATATCACACAAAGGTT+GGG + chr7_3:86928844-86928863 None:intergenic 35.0%
TGGTTATATCACACAAAGGT+TGG + chr7_3:86928845-86928864 None:intergenic 35.0%
ATGGGTATACACTACAGTAA+TGG + chr7_3:86928865-86928884 None:intergenic 35.0%
CGTTAGACCTGGAATTATAA+AGG + chr7_3:86928990-86929009 None:intergenic 35.0%
ACTGATGAGCCTAAAACAAT+TGG + chr7_3:86929037-86929056 None:intergenic 35.0%
AACAGGAAGAAGAAATTACC+TGG + chr7_3:86929219-86929238 None:intergenic 35.0%
ATTCGTAGCTATGGGTAATA+TGG - chr7_3:86929398-86929417 Msa1133440:intron 35.0%
! TTGCAGTATTGCTATTGAGT+TGG - chr7_3:86929467-86929486 Msa1133440:intron 35.0%
TTGTAATCGATCATCTGGAT+TGG - chr7_3:86929515-86929534 Msa1133440:intron 35.0%
TGTAATCGATCATCTGGATT+GGG - chr7_3:86929516-86929535 Msa1133440:intron 35.0%
TTTATCACTGTCGAACAATG+TGG - chr7_3:86929627-86929646 Msa1133440:intron 35.0%
!!! TATCACGTTCTTTTGGAGTT+TGG - chr7_3:86929750-86929769 Msa1133440:intron 35.0%
! CGTAAGATTTTACCTTGATG+TGG - chr7_3:86929793-86929812 Msa1133440:intron 35.0%
CTTCCTAAGTTTGGTTGTAA+TGG - chr7_3:86929894-86929913 Msa1133440:intron 35.0%
ATGCCATTACAACCAAACTT+AGG + chr7_3:86929900-86929919 None:intergenic 35.0%
CTAAGCCATCTTGTATTTGT+AGG - chr7_3:86929920-86929939 Msa1133440:intron 35.0%
CCTAGGTAAAGACCTAATAA+TGG + chr7_3:86930098-86930117 None:intergenic 35.0%
CCATTATTAGGTCTTTACCT+AGG - chr7_3:86930095-86930114 Msa1133440:CDS 35.0%
TTATTAGGTCTTTACCTAGG+TGG - chr7_3:86930098-86930117 Msa1133440:CDS 35.0%
AGTTATTCCTAAATTCCACC+AGG - chr7_3:86930300-86930319 Msa1133440:five_prime_UTR 35.0%
GGTTCTCGTTAGATACGATT+TGG + chr7_3:86927224-86927243 None:intergenic 40.0%
AACCAAACATAAACACGGCA+TGG - chr7_3:86927240-86927259 Msa1133440:three_prime_UTR 40.0%
ACCAAACATAAACACGGCAT+GGG - chr7_3:86927241-86927260 Msa1133440:three_prime_UTR 40.0%
GATATTCATAGGAACAGTGG+TGG + chr7_3:86927275-86927294 None:intergenic 40.0%
TGAATATCCTTCCTCAGTTC+GGG - chr7_3:86927287-86927306 Msa1133440:exon 40.0%
CTGTCTGAGTTCATCATCAA+CGG + chr7_3:86927407-86927426 None:intergenic 40.0%
AGTACTACTTCAACTAGGCT+TGG - chr7_3:86927445-86927464 Msa1133440:CDS 40.0%
! GGATTTTGCTCTAACATACC+GGG + chr7_3:86927490-86927509 None:intergenic 40.0%
!! GTTACCCGCTTATTTTCACA+AGG + chr7_3:86927773-86927792 None:intergenic 40.0%
CGGGTAACAACTTACAGATA+AGG - chr7_3:86927785-86927804 Msa1133440:intron 40.0%
GTCTCATAAGTGCTTATCCA+AGG - chr7_3:86927935-86927954 Msa1133440:intron 40.0%
TCAGGAAGAAGCTCTTTATC+AGG + chr7_3:86928160-86928179 None:intergenic 40.0%
TTCTTTGTCGAAGCTCTTCA+AGG + chr7_3:86928210-86928229 None:intergenic 40.0%
!! ATATCAGTTCTAGGAGTTGG+AGG - chr7_3:86928235-86928254 Msa1133440:CDS 40.0%
AGATTTCTTCAGTTAGCTCC+TGG - chr7_3:86928334-86928353 Msa1133440:CDS 40.0%
GTGGTGAAGAAAAATTCACC+AGG + chr7_3:86928355-86928374 None:intergenic 40.0%
GAAGGAAGTAAAAAACACCC+CGG + chr7_3:86928409-86928428 None:intergenic 40.0%
CATTCACAACTCACTAGGTA+GGG + chr7_3:86928431-86928450 None:intergenic 40.0%
ACATTCACAACTCACTAGGT+AGG + chr7_3:86928432-86928451 None:intergenic 40.0%
!! GTTTAAAGGTGCTATACCGT+TGG - chr7_3:86928486-86928505 Msa1133440:CDS 40.0%
! AAACTCTGTCAAGTTGCCAA+CGG + chr7_3:86928505-86928524 None:intergenic 40.0%
! CAACTTGACAGAGTTTTCCA+GGG - chr7_3:86928509-86928528 Msa1133440:intron 40.0%
AAGACTTTGATCTTTCACCC+TGG + chr7_3:86928529-86928548 None:intergenic 40.0%
CGATCCAGCTACTCTTAAAT+AGG - chr7_3:86928607-86928626 Msa1133440:intron 40.0%
GTTGCCTATTTAAGAGTAGC+TGG + chr7_3:86928614-86928633 None:intergenic 40.0%
AGGCAACTCACTCTAAATTG+AGG - chr7_3:86928627-86928646 Msa1133440:intron 40.0%
CTAATATTGTTGTGGTCTCG+TGG - chr7_3:86928901-86928920 Msa1133440:intron 40.0%
GTCTAACGAAAGCTGAAAGA+AGG - chr7_3:86929002-86929021 Msa1133440:intron 40.0%
! TCATCAGTTCTTTTCTACGC+CGG - chr7_3:86929049-86929068 Msa1133440:intron 40.0%
CAAGTAGGAGAAGGTTATTC+CGG + chr7_3:86929071-86929090 None:intergenic 40.0%
! CTGGTTCTTATGTTCAGTAC+AGG - chr7_3:86929184-86929203 Msa1133440:CDS 40.0%
!! ATCAATCGGTGTCAACTAGA+AGG + chr7_3:86929279-86929298 None:intergenic 40.0%
!! TTTTTAAGCATGCCTGCATC+AGG - chr7_3:86929372-86929391 Msa1133440:intron 40.0%
ATCAGGTCAATTCGTAGCTA+TGG - chr7_3:86929389-86929408 Msa1133440:intron 40.0%
TCAGGTCAATTCGTAGCTAT+GGG - chr7_3:86929390-86929409 Msa1133440:intron 40.0%
! GAGTGCTTATCACGTTCTTT+TGG - chr7_3:86929743-86929762 Msa1133440:intron 40.0%
TTACCTTGATGTGGTTCTTG+AGG - chr7_3:86929802-86929821 Msa1133440:intron 40.0%
TTTCCTCAAGAACCACATCA+AGG + chr7_3:86929808-86929827 None:intergenic 40.0%
CGGTACCTACAAATACAAGA+TGG + chr7_3:86929928-86929947 None:intergenic 40.0%
CAACTTCTATTGGGACAACT+TGG - chr7_3:86929954-86929973 Msa1133440:intron 40.0%
TCTATTGGGACAACTTGGAT+TGG - chr7_3:86929959-86929978 Msa1133440:intron 40.0%
CTTCTAGCAGCACCATTATT+AGG - chr7_3:86930083-86930102 Msa1133440:CDS 40.0%
ATACAGGAAGAGTAATGCTC+TGG + chr7_3:86930245-86930264 None:intergenic 40.0%
TGCAAAAATATCAGGCGACG+AGG - chr7_3:86927175-86927194 Msa1133440:three_prime_UTR 45.0%
TCCCATGCCGTGTTTATGTT+TGG + chr7_3:86927245-86927264 None:intergenic 45.0%
ACATAAACACGGCATGGGAT+TGG - chr7_3:86927246-86927265 Msa1133440:three_prime_UTR 45.0%
CATAAACACGGCATGGGATT+GGG - chr7_3:86927247-86927266 Msa1133440:three_prime_UTR 45.0%
CATACCGGGTCTTTCTTCAA+TGG + chr7_3:86927476-86927495 None:intergenic 45.0%
!!! AGGAGTTGGAGGAAGCATTT+TGG - chr7_3:86928246-86928265 Msa1133440:CDS 45.0%
!!! GGAGTTGGAGGAAGCATTTT+GGG - chr7_3:86928247-86928266 Msa1133440:CDS 45.0%
TGAAGCTCCTGTTCAATCAG+AGG - chr7_3:86928306-86928325 Msa1133440:CDS 45.0%
GAAGCTCCTGTTCAATCAGA+GGG - chr7_3:86928307-86928326 Msa1133440:CDS 45.0%
CTTCACATGAAATGCATGCC+AGG + chr7_3:86928467-86928486 None:intergenic 45.0%
! GCAACTTGACAGAGTTTTCC+AGG - chr7_3:86928508-86928527 Msa1133440:intron 45.0%
! GTGCAGGTTTCTGGATATTG+TGG - chr7_3:86928923-86928942 Msa1133440:intron 45.0%
TGGATATTGTGGCCTTCTCT+TGG - chr7_3:86928934-86928953 Msa1133440:intron 45.0%
GGATATTGTGGCCTTCTCTT+GGG - chr7_3:86928935-86928954 Msa1133440:intron 45.0%
TGATAGGACTTCCCAAGAGA+AGG + chr7_3:86928949-86928968 None:intergenic 45.0%
CTTTCAGCTTTCGTTAGACC+TGG + chr7_3:86929001-86929020 None:intergenic 45.0%
CGGAATAACCTTCTCCTACT+TGG - chr7_3:86929069-86929088 Msa1133440:intron 45.0%
AACCTTCTCCTACTTGGTTC+TGG - chr7_3:86929075-86929094 Msa1133440:CDS 45.0%
TACCAGAACCAAGTAGGAGA+AGG + chr7_3:86929080-86929099 None:intergenic 45.0%
!! AAGGTGCTGTTGAATCACTG+TGG - chr7_3:86929134-86929153 Msa1133440:CDS 45.0%
GTCGTGTGGCAAGTATCAAT+CGG + chr7_3:86929293-86929312 None:intergenic 45.0%
! GATCATCTGGATTGGGACAT+GGG - chr7_3:86929523-86929542 Msa1133440:intron 45.0%
GGATTGGGACATGGGTATAA+CGG - chr7_3:86929531-86929550 Msa1133440:intron 45.0%
GATTGGGACATGGGTATAAC+GGG - chr7_3:86929532-86929551 Msa1133440:intron 45.0%
ATTGGGACATGGGTATAACG+GGG - chr7_3:86929533-86929552 Msa1133440:intron 45.0%
CCTTAAAAGCCAGCTCTCAA+GGG + chr7_3:86929704-86929723 None:intergenic 45.0%
!!! CCTTGAGAGCTGGCTTTTAA+GGG - chr7_3:86929702-86929721 Msa1133440:intron 45.0%
!! GGACAACTTGGATTGGTTAC+TGG - chr7_3:86929966-86929985 Msa1133440:CDS 45.0%
!! TTGGATTGGTTACTGGAGAC+CGG - chr7_3:86929973-86929992 Msa1133440:CDS 45.0%
ACCTCCAAACTGATAGCATC+CGG + chr7_3:86929995-86930014 None:intergenic 45.0%
! GTTTGGAGGTACGTTGTAGT+CGG - chr7_3:86930005-86930024 Msa1133440:CDS 45.0%
AACTTGAGTGAGAGGATCTG+TGG + chr7_3:86930063-86930082 None:intergenic 45.0%
GCTAGAAGAACTTGAGTGAG+AGG + chr7_3:86930071-86930090 None:intergenic 45.0%
! CATGGATGGTCAAACTTGCT+GGG - chr7_3:86930123-86930142 Msa1133440:CDS 45.0%
AGGAAGAGTAATGCTCTGGT+AGG + chr7_3:86930241-86930260 None:intergenic 45.0%
! TAGGGGTTGTTGAGTGGGTT+CGG + chr7_3:86927318-86927337 None:intergenic 50.0%
CCGAATAGGGGTTGTTGAGT+GGG + chr7_3:86927323-86927342 None:intergenic 50.0%
CCCACTCAACAACCCCTATT+CGG - chr7_3:86927320-86927339 Msa1133440:CDS 50.0%
CCACTCAACAACCCCTATTC+GGG - chr7_3:86927321-86927340 Msa1133440:CDS 50.0%
TCCGCCATTGAAGAAAGACC+CGG - chr7_3:86927469-86927488 Msa1133440:CDS 50.0%
ACCGGGTCTTTCTTCAATGG+CGG + chr7_3:86927473-86927492 None:intergenic 50.0%
CTGACACCCTCTGATTGAAC+AGG + chr7_3:86928316-86928335 None:intergenic 50.0%
CACAACTCACTAGGTAGGGA+AGG + chr7_3:86928427-86928446 None:intergenic 50.0%
CAGTACAGGCTTGTCTTTCC+AGG - chr7_3:86929198-86929217 Msa1133440:CDS 50.0%
TCATTGGGTCAATGGTCGTG+TGG + chr7_3:86929307-86929326 None:intergenic 50.0%
GCTACGAATTGACCTGATGC+AGG + chr7_3:86929387-86929406 None:intergenic 50.0%
! CGATCATCTGGATTGGGACA+TGG - chr7_3:86929522-86929541 Msa1133440:intron 50.0%
!!! CCCTTGAGAGCTGGCTTTTA+AGG - chr7_3:86929701-86929720 Msa1133440:intron 50.0%
CCCTTAAAAGCCAGCTCTCA+AGG + chr7_3:86929705-86929724 None:intergenic 50.0%
GAGACCGGATGCTATCAGTT+TGG - chr7_3:86929988-86930007 Msa1133440:CDS 50.0%
ACCGGATGCTATCAGTTTGG+AGG - chr7_3:86929991-86930010 Msa1133440:CDS 50.0%
TGAGTGAGAGGATCTGTGGA+TGG + chr7_3:86930059-86930078 None:intergenic 50.0%
GTCTTTACCTAGGTGGTGCA+TGG - chr7_3:86930105-86930124 Msa1133440:CDS 50.0%
TTACCTAGGTGGTGCATGGA+TGG - chr7_3:86930109-86930128 Msa1133440:CDS 50.0%
GCATGGATGGTCAAACTTGC+TGG - chr7_3:86930122-86930141 Msa1133440:CDS 50.0%
TCCTAAATTCCACCAGGCCT+TGG - chr7_3:86930306-86930325 Msa1133440:five_prime_UTR 50.0%
CCCGAATAGGGGTTGTTGAG+TGG + chr7_3:86927324-86927343 None:intergenic 55.0%
AGGGAAGCTGACCCGAATAG+GGG + chr7_3:86927335-86927354 None:intergenic 55.0%
GAGGGAAGCTGACCCGAATA+GGG + chr7_3:86927336-86927355 None:intergenic 55.0%
AGAGGGAAGCTGACCCGAAT+AGG + chr7_3:86927337-86927356 None:intergenic 55.0%
TTGTTGTGGTCTCGTGGTGC+AGG - chr7_3:86928907-86928926 Msa1133440:intron 55.0%
TGCGGGTACCAGAACCAAGT+AGG + chr7_3:86929086-86929105 None:intergenic 55.0%
GGTTCTTCTCCCTTGAGAGC+TGG - chr7_3:86929692-86929711 Msa1133440:intron 55.0%
CGTTGTAGTCGGAGCAGTAG+TGG - chr7_3:86930016-86930035 Msa1133440:CDS 55.0%
TGACCATCCATGCACCACCT+AGG + chr7_3:86930115-86930134 None:intergenic 55.0%
GCCAAGGCCTGGTGGAATTT+AGG + chr7_3:86930310-86930329 None:intergenic 55.0%
GGAGCAACCCGAACTGAGGA+AGG + chr7_3:86927297-86927316 None:intergenic 60.0%
GTTCGGAGCAACCCGAACTG+AGG + chr7_3:86927301-86927320 None:intergenic 60.0%
GGTCTCGTGGTGCAGGTTTC+TGG - chr7_3:86928914-86928933 Msa1133440:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 86927117 86930335 86927117 ID=Msa1133440;Name=Msa1133440
chr7_3 mRNA 86927117 86930335 86927117 ID=Msa1133440-mRNA-1;Parent=Msa1133440;Name=Msa1133440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|4|184|340
chr7_3 exon 86927117 86927510 86927117 ID=Msa1133440-mRNA-1:exon:26138;Parent=Msa1133440-mRNA-1
chr7_3 exon 86928233 86928523 86928233 ID=Msa1133440-mRNA-1:exon:26137;Parent=Msa1133440-mRNA-1
chr7_3 exon 86929071 86929360 86929071 ID=Msa1133440-mRNA-1:exon:26136;Parent=Msa1133440-mRNA-1
chr7_3 exon 86929962 86930335 86929962 ID=Msa1133440-mRNA-1:exon:26135;Parent=Msa1133440-mRNA-1
chr7_3 five_prime_UTR 86930194 86930335 86930194 ID=Msa1133440-mRNA-1:five_prime_utr;Parent=Msa1133440-mRNA-1
chr7_3 CDS 86929962 86930193 86929962 ID=Msa1133440-mRNA-1:cds;Parent=Msa1133440-mRNA-1
chr7_3 CDS 86929071 86929360 86929071 ID=Msa1133440-mRNA-1:cds;Parent=Msa1133440-mRNA-1
chr7_3 CDS 86928233 86928523 86928233 ID=Msa1133440-mRNA-1:cds;Parent=Msa1133440-mRNA-1
chr7_3 CDS 86927301 86927510 86927301 ID=Msa1133440-mRNA-1:cds;Parent=Msa1133440-mRNA-1
chr7_3 three_prime_UTR 86927117 86927300 86927117 ID=Msa1133440-mRNA-1:three_prime_utr;Parent=Msa1133440-mRNA-1
Gene Sequence

>Msa1133440

ATGGGATTGGGAACCACCACTGTTCCTATGAATATCCTTCCTCAGTTCGGGTTGCTCCGAACCCACTCAACAACCCCTATTCGGGTCAGCTTCCCTCTCTGTCGAAGAAGAAATAATAAGAGTTTTGGTAAATTCGTTTGTTTCGCCGTTGATGATGAACTCAGACAGAACCAACAACAACAGCTTAGTACTACTTCAACTAGGCTTGGTTCCGCCATTGAAGAAAGACCCGGTGAAGAAACATTGGAAAATTTTAAGGAAGATGGAGAAAGAAGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCACCTTGAAGAGCTTCGACAAAGAATCTTTATATCAGTTCTAGGAGTTGGAGGAAGCATTTTGGGATGCTTTGCATTTTCAAAAGATTTGGTGAGGCTTCTTGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGTTAGCTCCTGGTGAATTTTTCTTCACCACTTTAAAGGTTTCTGGATATTGTGGCCTTCTCTTGGGAAGTCCTATCATTCTCTATGAAATCATAGCCTTTATAATTCCAGGTCTAACGAAAGCTGAAAGAAGGTTTTTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTACGCCGGAATAACCTTCTCCTACTTGGTTCTGGTACCCGCAGCATTAAATTTCTTTGTCAATTATGCTGAAGGTGCTGTTGAATCACTGTGGTCCATTGATCAATACTTTGAGTTTGTTCTGGTTCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTACCGATTATACAACTTCTATTGGGACAACTTGGATTGGTTACTGGAGACCGGATGCTATCAGTTTGGAGGTACGTTGTAGTCGGAGCAGTAGTGGCAGCTGCTATAGTTACGCCATCCACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCATTATTAGGTCTTTACCTAGGTGGTGCATGGATGGTCAAACTTGCTGGGCGTTAA

Protein sequence

>Msa1133440

MGLGTTTVPMNILPQFGLLRTHSTTPIRVSFPLCRRRNNKSFGKFVCFAVDDELRQNQQQQLSTTSTRLGSAIEERPGEETLENFKEDGERSAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR*