AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295210 MtrunA17_Chr8g0360741 89.057 265 5 1 1 241 120 384 1.70e-160 449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295210 AT5G54290.1 77.011 261 36 1 5 241 94 354 1.05e-130 373
Msa1295210 AT5G54290.2 77.011 261 36 1 5 241 95 355 1.46e-130 373

Find 69 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTTTGGCTGTAATTTA+TGG 0.085552 8_3:-53237476 Msa1295210:intron
AAATTGGCGGCAACTGATTT+TGG 0.158615 8_3:+53235965 None:intergenic
TTCTGGTTTGGCTGTAATTA+TGG 0.159872 8_3:-53236438 Msa1295210:CDS
TCAGAAACAAATTACCTTAT+AGG 0.167684 8_3:+53234686 None:intergenic
TATAATATGGCAGGGGCTTT+TGG 0.205217 8_3:-53237316 Msa1295210:intron
GGATTACCTGTGGCTGCTTC+TGG 0.231671 8_3:-53236455 Msa1295210:CDS
TGACTTACTTGATGGAAAAT+TGG 0.255517 8_3:+53235949 None:intergenic
ATACATCTCTCCCTTACTTT+TGG 0.275809 8_3:-53234881 Msa1295210:CDS
ACCTGTTCTAGCCACCCTTT+TGG 0.292716 8_3:-53235789 Msa1295210:CDS
TCTGGTTTGGCTGTAATTAT+GGG 0.303888 8_3:-53236437 Msa1295210:CDS
ACCTGTGGCTGCTTCTGGTT+TGG 0.311226 8_3:-53236450 Msa1295210:CDS
GGAAAGGCTTATGGACAAAT+TGG 0.328498 8_3:-53236482 Msa1295210:CDS
ACAGGCCAACGAAGCAGTTC+TGG 0.332450 8_3:-53237624 Msa1295210:CDS
ACAGTTTGGCTGTAATTTAT+GGG 0.340507 8_3:-53237475 Msa1295210:intron
TACATTACCATTGTGGCAGC+TGG 0.360323 8_3:+53234483 None:intergenic
CAGCATGGATCAATCCTATA+AGG 0.383503 8_3:-53234700 Msa1295210:intron
AAAAGAAGCAGCCAAAAGTA+AGG 0.394341 8_3:+53234870 None:intergenic
GGTGTGCAAGCATACCTGGC+TGG 0.396078 8_3:-53235848 Msa1295210:CDS
GGAGGCATCGGTGACTGGTT+TGG 0.422411 8_3:-53237671 Msa1295210:CDS
CCCAAAAGGGTGGCTAGAAC+AGG 0.429955 8_3:+53235788 None:intergenic
TTTGTACAGAATCCAGTGAT+TGG 0.432285 8_3:-53234934 Msa1295210:intron
AGCAAGCTGCCTCCAATCAC+TGG 0.441209 8_3:+53234922 None:intergenic
GTGCATATACCTTCTTAGAT+AGG 0.442136 8_3:-53234512 Msa1295210:CDS
TGCTTCGTTGGCCTGTTGTC+CGG 0.446233 8_3:+53237631 None:intergenic
GTTAGGTGTGCAAGCATACC+TGG 0.458793 8_3:-53235852 Msa1295210:intron
CTGATGGAGGCATCGGTGAC+TGG 0.471880 8_3:-53237676 Msa1295210:CDS
CACTAAGTGTACAGGGAGAA+AGG 0.480149 8_3:+53237435 None:intergenic
CGGTAACACACTAAGTGTAC+AGG 0.485456 8_3:+53237427 None:intergenic
ATGCAGCGACATATCCCAAA+AGG 0.493924 8_3:+53235774 None:intergenic
AGTGCACCTAGTAAAACTTA+AGG 0.500359 8_3:+53237589 None:intergenic
TTGGCTGTAATTTATGGGGC+AGG 0.501817 8_3:-53237470 Msa1295210:CDS
GACAGCGGAGCAATGCTGTT+AGG 0.503054 8_3:-53234540 Msa1295210:intron
CCAATGTAACCGAGAGTTAG+CGG 0.511934 8_3:+53237407 None:intergenic
CTTACTTGATGGAAAATTGG+CGG 0.519821 8_3:+53235952 None:intergenic
AAGCAGCCACAGGTAATCCT+TGG 0.531751 8_3:+53236459 None:intergenic
GTGTGCAAGCATACCTGGCT+GGG 0.532324 8_3:-53235847 Msa1295210:CDS
ATCAAAACTGTCGAAGAATG+AGG 0.532805 8_3:+53235988 None:intergenic
TTGGTCCAGAACTGCTTCGT+TGG 0.540266 8_3:+53237619 None:intergenic
CCGCTAACTCTCGGTTACAT+TGG 0.544941 8_3:-53237407 Msa1295210:intron
ACTTTGGCTGATGGAGGCAT+CGG 0.545892 8_3:-53237683 Msa1295210:CDS
TAAAACTTAAGGACGATAGT+TGG 0.546369 8_3:+53237600 None:intergenic
TTTGTTTCAGTACCTCAAGA+AGG 0.547535 8_3:+53236408 None:intergenic
GGCATCGGTGACTGGTTTGG+AGG 0.548333 8_3:-53237668 Msa1295210:CDS
AAGTGTACAGGGAGAAAGGC+TGG 0.555797 8_3:+53237439 None:intergenic
ACATTACCATTGTGGCAGCT+GGG 0.561699 8_3:+53234484 None:intergenic
AAAGAAGCAGCCAAAAGTAA+GGG 0.563088 8_3:+53234871 None:intergenic
CGTTTCGCAAGTACTCAGCA+TGG 0.564228 8_3:-53234715 Msa1295210:CDS
TCAAAACTGTCGAAGAATGA+GGG 0.564734 8_3:+53235989 None:intergenic
ATGCAAATGTAAGCCCAGCC+AGG 0.569028 8_3:+53235834 None:intergenic
GTACAGAATCCAGTGATTGG+AGG 0.569251 8_3:-53234931 Msa1295210:intron
TGGGAACAGCCTATCTAAGA+AGG 0.570878 8_3:+53234503 None:intergenic
CAGTTTGGCTGTAATTTATG+GGG 0.573149 8_3:-53237474 Msa1295210:CDS
GCTTATGGACAAATTGGCCA+AGG 0.583986 8_3:-53236476 Msa1295210:CDS
GGGATATGTCGCTGCATCCA+AGG 0.585622 8_3:-53235768 Msa1295210:intron
TGCAGCGACATATCCCAAAA+GGG 0.588774 8_3:+53235775 None:intergenic
GGTAATGTAGAAAATGTTGT+GGG 0.594860 8_3:-53234469 Msa1295210:exon
TGGTAATGTAGAAAATGTTG+TGG 0.595826 8_3:-53234470 Msa1295210:exon
TATGGGTCTGAACCTTCTTG+AGG 0.597434 8_3:-53236420 Msa1295210:intron
AGTGTGTTACCGCTAACTCT+CGG 0.597960 8_3:-53237416 Msa1295210:CDS
GGAGCAATGCTGTTAGGAGG+TGG 0.599846 8_3:-53234534 Msa1295210:CDS
GCCAAACCAGAAGCAGCCAC+AGG 0.604082 8_3:+53236449 None:intergenic
AGCGGAGCAATGCTGTTAGG+AGG 0.617303 8_3:-53234537 Msa1295210:CDS
GCTGTTCCCAGCTGCCACAA+TGG 0.640005 8_3:-53234490 Msa1295210:CDS
AACAGGTGTACTGCATGGTG+AGG 0.645829 8_3:+53235805 None:intergenic
GGTAACACACTAAGTGTACA+GGG 0.646083 8_3:+53237428 None:intergenic
CAAAACTGTCGAAGAATGAG+GGG 0.666686 8_3:+53235990 None:intergenic
AGCGACATATCCCAAAAGGG+TGG 0.693602 8_3:+53235778 None:intergenic
AATTGGCCAAGGATTACCTG+TGG 0.714404 8_3:-53236465 Msa1295210:CDS
GCTAGAACAGGTGTACTGCA+TGG 0.719252 8_3:+53235800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAGAAATAAAATCATT+CGG + chr8_3:53234495-53234514 None:intergenic 15.0%
!! AATCTAAATCTGTTATAATA+TGG - chr8_3:53234719-53234738 Msa1295210:CDS 15.0%
!! ATAAGAAGAATAATATCATA+TGG + chr8_3:53234805-53234824 None:intergenic 15.0%
!!! GTGTTATTCATTAAATTTTT+TGG - chr8_3:53235750-53235769 Msa1295210:intron 15.0%
!! TCTTGATGTAAAAATTTATA+TGG - chr8_3:53236329-53236348 Msa1295210:intron 15.0%
!! ATAATTGAAACTTGTGTATA+TGG - chr8_3:53234523-53234542 Msa1295210:CDS 20.0%
!!! TAGTCATTTTAAAACGTTTT+TGG + chr8_3:53234698-53234717 None:intergenic 20.0%
!!! TAATATCATATGGATTAACT+CGG + chr8_3:53234795-53234814 None:intergenic 20.0%
!!! CTTCTTATTATCCATTTTTA+TGG - chr8_3:53234817-53234836 Msa1295210:intron 20.0%
!! AGAAAATCAATCTTCAAATA+GGG + chr8_3:53234843-53234862 None:intergenic 20.0%
!! TCTTATTACTAATGTACTAA+GGG - chr8_3:53234862-53234881 Msa1295210:CDS 20.0%
!! AATTTATATTCCGTGAAAAT+AGG + chr8_3:53235082-53235101 None:intergenic 20.0%
!! ATTCATACATGAAATGTTAT+TGG + chr8_3:53235138-53235157 None:intergenic 20.0%
!!! GATATTTGTATTTGTTGTAT+AGG - chr8_3:53235299-53235318 Msa1295210:intron 20.0%
!!! AAAAGTCGTTTTTAATACAT+AGG + chr8_3:53235395-53235414 None:intergenic 20.0%
!!! AAAATACTGTTATTTAGAAG+AGG + chr8_3:53235791-53235810 None:intergenic 20.0%
!!! CTTCTAAATAACAGTATTTT+AGG - chr8_3:53235791-53235810 Msa1295210:CDS 20.0%
!! GTAAAAATTTATATGGTGAT+TGG - chr8_3:53236336-53236355 Msa1295210:intron 20.0%
!! AACTAATAAGCAAATAAAAC+TGG + chr8_3:53236383-53236402 None:intergenic 20.0%
!! TAATGAAAAAGAATAATGTC+CGG + chr8_3:53236893-53236912 None:intergenic 20.0%
!!! TGAATCATAAGAAAATTTTC+CGG + chr8_3:53237020-53237039 None:intergenic 20.0%
!!! GAAAATTTTCTTATGATTCA+TGG - chr8_3:53237020-53237039 Msa1295210:intron 20.0%
! ATAGAAATAAAATCATTCGG+CGG + chr8_3:53234492-53234511 None:intergenic 25.0%
! TCTTATTCAACTTTACAGTT+TGG - chr8_3:53234559-53234578 Msa1295210:intron 25.0%
!!! TGTTGTTGTTTTACGTTTTT+CGG - chr8_3:53234670-53234689 Msa1295210:intron 25.0%
! TAAATCTGTTATAATATGGC+AGG - chr8_3:53234723-53234742 Msa1295210:CDS 25.0%
! AAATCTGTTATAATATGGCA+GGG - chr8_3:53234724-53234743 Msa1295210:CDS 25.0%
!! AATATCATATGGATTAACTC+GGG + chr8_3:53234794-53234813 None:intergenic 25.0%
! GAGAAAATCAATCTTCAAAT+AGG + chr8_3:53234844-53234863 None:intergenic 25.0%
! CTCTTATTACTAATGTACTA+AGG - chr8_3:53234861-53234880 Msa1295210:CDS 25.0%
!! GTTTTCGACAAATTCTATTT+GGG - chr8_3:53235203-53235222 Msa1295210:intron 25.0%
! TGAATGAGAATAAAAGAGAA+AGG + chr8_3:53235447-53235466 None:intergenic 25.0%
! TGAATATTGTTGTAAACACA+AGG + chr8_3:53235709-53235728 None:intergenic 25.0%
! TTAGAAGAGGTTGAAAAAAA+AGG + chr8_3:53235778-53235797 None:intergenic 25.0%
! ACGATAAAAAATTCTTCGAA+TGG - chr8_3:53235969-53235988 Msa1295210:CDS 25.0%
!!! CACATTTAGTTCTTTCAATA+TGG - chr8_3:53236135-53236154 Msa1295210:intron 25.0%
! TTTACATCAAGAAGAAACAT+TGG + chr8_3:53236321-53236340 None:intergenic 25.0%
! ATAGGTTCTATAATTTGGAT+AGG - chr8_3:53236668-53236687 Msa1295210:intron 25.0%
! ATACAAAGTTGACAAAAAAG+TGG + chr8_3:53236868-53236887 None:intergenic 25.0%
! AAAAGATTAAATTCACGATC+CGG - chr8_3:53236998-53237017 Msa1295210:intron 25.0%
! TATCTTAAAGAAACGCTTTA+AGG + chr8_3:53237254-53237273 None:intergenic 25.0%
! TCAGAAACAAATTACCTTAT+AGG + chr8_3:53237365-53237384 None:intergenic 25.0%
! TACAAGCTATCCAATTAATT+AGG + chr8_3:53237449-53237468 None:intergenic 25.0%
TAAAACTTAAGGACGATAGT+TGG + chr8_3:53234451-53234470 None:intergenic 30.0%
! TATCGTCCTTAAGTTTTACT+AGG - chr8_3:53234453-53234472 Msa1295210:three_prime_UTR 30.0%
TACAGTTTGGCTGTAATTTA+TGG - chr8_3:53234572-53234591 Msa1295210:intron 30.0%
ACAGTTTGGCTGTAATTTAT+GGG - chr8_3:53234573-53234592 Msa1295210:intron 30.0%
AATCTGTTATAATATGGCAG+GGG - chr8_3:53234725-53234744 Msa1295210:CDS 30.0%
TTCAAATAGGGCCATAAAAA+TGG + chr8_3:53234831-53234850 None:intergenic 30.0%
!! AGGTGAAAGGTACTAATATA+TGG - chr8_3:53234947-53234966 Msa1295210:intron 30.0%
ATGTCAAATGCTTAGATGTT+TGG - chr8_3:53235037-53235056 Msa1295210:intron 30.0%
! TTTTGTTAGCTGCATATTTG+AGG - chr8_3:53235100-53235119 Msa1295210:intron 30.0%
! ACATGAAATGTTATTGGTCT+TGG + chr8_3:53235132-53235151 None:intergenic 30.0%
! GGTTTTCGACAAATTCTATT+TGG - chr8_3:53235202-53235221 Msa1295210:intron 30.0%
GAGTAAAAGAAACTACATCT+TGG + chr8_3:53235842-53235861 None:intergenic 30.0%
TGATCTGCGAAAAAAATTCA+AGG + chr8_3:53236025-53236044 None:intergenic 30.0%
TGACTTACTTGATGGAAAAT+TGG + chr8_3:53236102-53236121 None:intergenic 30.0%
CATGAACAAATTCTACTGTT+AGG - chr8_3:53236179-53236198 Msa1295210:intron 30.0%
! AAGAAACATTGGTTACTAAC+AGG + chr8_3:53236310-53236329 None:intergenic 30.0%
!! ATAAAACTGGTTTACCCTTT+TGG + chr8_3:53236370-53236389 None:intergenic 30.0%
!! ATCGGTCAAATCGATTTTAT+TGG - chr8_3:53236437-53236456 Msa1295210:CDS 30.0%
TTACTTACGTTTGCATATCA+AGG - chr8_3:53236487-53236506 Msa1295210:intron 30.0%
! GTAAAGACTAAACAGAGTTT+TGG + chr8_3:53236636-53236655 None:intergenic 30.0%
! TTTGGAGTTTCTAAGTATGA+AGG - chr8_3:53236729-53236748 Msa1295210:intron 30.0%
ATTGAAGCGTGAGAAAAAAT+CGG + chr8_3:53236789-53236808 None:intergenic 30.0%
! TTTTGTCAACTTTGTATAGC+CGG - chr8_3:53236871-53236890 Msa1295210:intron 30.0%
GTGACTAAATATGCAAATCA+TGG + chr8_3:53237066-53237085 None:intergenic 30.0%
GTATCCACTTCCTAATTAAT+TGG - chr8_3:53237436-53237455 Msa1295210:CDS 30.0%
CTATCCAATTAATTAGGAAG+TGG + chr8_3:53237443-53237462 None:intergenic 30.0%
! CATTTTCTACATTACCATTG+TGG + chr8_3:53237575-53237594 None:intergenic 30.0%
! TGGTAATGTAGAAAATGTTG+TGG - chr8_3:53237578-53237597 Msa1295210:intron 30.0%
GGTAATGTAGAAAATGTTGT+GGG - chr8_3:53237579-53237598 Msa1295210:intron 30.0%
AGTGCACCTAGTAAAACTTA+AGG + chr8_3:53234462-53234481 None:intergenic 35.0%
CAGTTTGGCTGTAATTTATG+GGG - chr8_3:53234574-53234593 Msa1295210:intron 35.0%
!! AGTGTTCTAGGTTTTCACTT+AGG - chr8_3:53234927-53234946 Msa1295210:CDS 35.0%
! TAGGTTTTCACTTAGGTGAA+AGG - chr8_3:53234934-53234953 Msa1295210:intron 35.0%
! CCTTCTACTTCCTATTTTCA+CGG - chr8_3:53235069-53235088 Msa1295210:intron 35.0%
!!! CACTTGTTGTTCTGTTTTCT+TGG - chr8_3:53235181-53235200 Msa1295210:intron 35.0%
GAATAAAAGAGAAAGGCGAA+TGG + chr8_3:53235440-53235459 None:intergenic 35.0%
! AGATTCTATAGCATTTTCCC+TGG - chr8_3:53235496-53235515 Msa1295210:intron 35.0%
! GATTCTATAGCATTTTCCCT+GGG - chr8_3:53235497-53235516 Msa1295210:intron 35.0%
!! TTCTGGTTTGGCTGTAATTA+TGG - chr8_3:53235610-53235629 Msa1295210:intron 35.0%
!! TCTGGTTTGGCTGTAATTAT+GGG - chr8_3:53235611-53235630 Msa1295210:intron 35.0%
TTTGTTTCAGTACCTCAAGA+AGG + chr8_3:53235643-53235662 None:intergenic 35.0%
GAAAAGTGATCTCACAGATT+CGG + chr8_3:53235667-53235686 None:intergenic 35.0%
TTCATAGTCTAACTCTCAGT+TGG - chr8_3:53235725-53235744 Msa1295210:intron 35.0%
TCAAAACTGTCGAAGAATGA+GGG + chr8_3:53236062-53236081 None:intergenic 35.0%
ATCAAAACTGTCGAAGAATG+AGG + chr8_3:53236063-53236082 None:intergenic 35.0%
CTTACTTGATGGAAAATTGG+CGG + chr8_3:53236099-53236118 None:intergenic 35.0%
TGATTGGAAAAAGAGCCAAA+AGG - chr8_3:53236352-53236371 Msa1295210:intron 35.0%
GATTGGAAAAAGAGCCAAAA+GGG - chr8_3:53236353-53236372 Msa1295210:intron 35.0%
ACCCAATCAATACAAATCTC+CGG - chr8_3:53236582-53236601 Msa1295210:intron 35.0%
!! ACCGGAGATTTGTATTGATT+GGG + chr8_3:53236586-53236605 None:intergenic 35.0%
! ACTCTGTTTAGTCTTTACCT+AGG - chr8_3:53236638-53236657 Msa1295210:intron 35.0%
CGAGGATAGGTTCTATAATT+TGG - chr8_3:53236663-53236682 Msa1295210:intron 35.0%
GTTTCTAAGTATGAAGGATC+CGG - chr8_3:53236735-53236754 Msa1295210:intron 35.0%
AAGCAATGTCTCGCATAATT+TGG - chr8_3:53236821-53236840 Msa1295210:intron 35.0%
AGTCACTCTTATGCAAATGA+AGG - chr8_3:53237080-53237099 Msa1295210:intron 35.0%
TTTGTACAGAATCCAGTGAT+TGG - chr8_3:53237114-53237133 Msa1295210:intron 35.0%
!! TTGCTTTTGACATACACAAC+AGG - chr8_3:53237144-53237163 Msa1295210:intron 35.0%
! ATACATCTCTCCCTTACTTT+TGG - chr8_3:53237167-53237186 Msa1295210:intron 35.0%
AAAGAAGCAGCCAAAAGTAA+GGG + chr8_3:53237180-53237199 None:intergenic 35.0%
AAAAGAAGCAGCCAAAAGTA+AGG + chr8_3:53237181-53237200 None:intergenic 35.0%
GAAAGCAAGCTCTGTAAATA+CGG + chr8_3:53237314-53237333 None:intergenic 35.0%
GTGCATATACCTTCTTAGAT+AGG - chr8_3:53237536-53237555 Msa1295210:intron 35.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG - chr8_3:53234349-53234368 Msa1295210:three_prime_UTR 40.0%
CCATCAGCCAAAGTAAAAAC+AGG + chr8_3:53234359-53234378 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG - chr8_3:53234356-53234375 Msa1295210:three_prime_UTR 40.0%
! GTTTTTACTTTGGCTGATGG+AGG - chr8_3:53234359-53234378 Msa1295210:three_prime_UTR 40.0%
GGTAACACACTAAGTGTACA+GGG + chr8_3:53234623-53234642 None:intergenic 40.0%
! TATAATATGGCAGGGGCTTT+TGG - chr8_3:53234732-53234751 Msa1295210:intron 40.0%
GTCATTAGACACCATTGCTT+AGG - chr8_3:53234889-53234908 Msa1295210:CDS 40.0%
! ACCATTGCTTAGGAAAGTGT+AGG - chr8_3:53234899-53234918 Msa1295210:CDS 40.0%
ACCTACACTTTCCTAAGCAA+TGG + chr8_3:53234903-53234922 None:intergenic 40.0%
!! GTGTAGGTTTCTAGTGTTCT+AGG - chr8_3:53234915-53234934 Msa1295210:CDS 40.0%
TAACCAGCGAATTGCTCTTT+AGG - chr8_3:53234980-53234999 Msa1295210:intron 40.0%
CCGTGAAAATAGGAAGTAGA+AGG + chr8_3:53235072-53235091 None:intergenic 40.0%
CTGTCTCTGTTATGTGTTTG+TGG + chr8_3:53235240-53235259 None:intergenic 40.0%
AACAATGTCTTCTTCCTGTC+AGG - chr8_3:53235466-53235485 Msa1295210:intron 40.0%
TCTTCTTCCTGTCAGGTTAT+TGG - chr8_3:53235473-53235492 Msa1295210:intron 40.0%
AGAATCTCCAATAACCTGAC+AGG + chr8_3:53235483-53235502 None:intergenic 40.0%
! TCTTTTGCAGGAAAGGCTTA+TGG - chr8_3:53235557-53235576 Msa1295210:intron 40.0%
GGAAAGGCTTATGGACAAAT+TGG - chr8_3:53235566-53235585 Msa1295210:intron 40.0%
CAAAACTGTCGAAGAATGAG+GGG + chr8_3:53236061-53236080 None:intergenic 40.0%
!! AAATTGGCGGCAACTGATTT+TGG + chr8_3:53236086-53236105 None:intergenic 40.0%
!! GAGAGCATTGACTTACTTGA+TGG + chr8_3:53236110-53236129 None:intergenic 40.0%
GGTTACTAACAGGAATACCT+TGG + chr8_3:53236300-53236319 None:intergenic 40.0%
AAAACTCAGCAGTCTCACAT+CGG - chr8_3:53236419-53236438 Msa1295210:intron 40.0%
! CACCGGAGATTTGTATTGAT+TGG + chr8_3:53236587-53236606 None:intergenic 40.0%
AATAGAACACACACACACAC+CGG + chr8_3:53236604-53236623 None:intergenic 40.0%
! TTAGTCTTTACCTAGGAACG+AGG - chr8_3:53236645-53236664 Msa1295210:intron 40.0%
CCAAATGCCTACCATAGTTA+CGG + chr8_3:53236714-53236733 None:intergenic 40.0%
AGCATGATATCCTCAGATAC+CGG + chr8_3:53236757-53236776 None:intergenic 40.0%
AGTGGCAGATCATGAATGTT+CGG + chr8_3:53236850-53236869 None:intergenic 40.0%
!! TTTTGGCTGCTTCTTTTGCT+GGG - chr8_3:53237184-53237203 Msa1295210:intron 40.0%
CAGCATGGATCAATCCTATA+AGG - chr8_3:53237348-53237367 Msa1295210:intron 40.0%
CACGACAAGTATCAGAAACA+TGG + chr8_3:53237476-53237495 None:intergenic 40.0%
!!! GGAGGCATTCTATTTTCAGC+CGG - chr8_3:53234398-53234417 Msa1295210:three_prime_UTR 45.0%
! TCTATTTTCAGCCGGACAAC+AGG - chr8_3:53234406-53234425 Msa1295210:three_prime_UTR 45.0%
TTGGCTGTAATTTATGGGGC+AGG - chr8_3:53234578-53234597 Msa1295210:intron 45.0%
CACTAAGTGTACAGGGAGAA+AGG + chr8_3:53234616-53234635 None:intergenic 45.0%
CGGTAACACACTAAGTGTAC+AGG + chr8_3:53234624-53234643 None:intergenic 45.0%
AGTGTGTTACCGCTAACTCT+CGG - chr8_3:53234632-53234651 Msa1295210:intron 45.0%
CCAATGTAACCGAGAGTTAG+CGG + chr8_3:53234644-53234663 None:intergenic 45.0%
TGTCCTAAAGAGCAATTCGC+TGG + chr8_3:53234986-53235005 None:intergenic 45.0%
TACATAGGCTCAACTGCTCA+AGG + chr8_3:53235380-53235399 None:intergenic 45.0%
TAATGTGGTTGCAAGTCCCA+GGG + chr8_3:53235516-53235535 None:intergenic 45.0%
GCTTATGGACAAATTGGCCA+AGG - chr8_3:53235572-53235591 Msa1295210:intron 45.0%
AATTGGCCAAGGATTACCTG+TGG - chr8_3:53235583-53235602 Msa1295210:intron 45.0%
TATGGGTCTGAACCTTCTTG+AGG - chr8_3:53235628-53235647 Msa1295210:intron 45.0%
TGCAGCGACATATCCCAAAA+GGG + chr8_3:53236276-53236295 None:intergenic 45.0%
ATGCAGCGACATATCCCAAA+AGG + chr8_3:53236277-53236296 None:intergenic 45.0%
CTTTACCTAGGAACGAGGAT+AGG - chr8_3:53236650-53236669 Msa1295210:intron 45.0%
TAGAACCTATCCTCGTTCCT+AGG + chr8_3:53236658-53236677 None:intergenic 45.0%
GACTATCTCGACCGTAACTA+TGG - chr8_3:53236700-53236719 Msa1295210:intron 45.0%
ATCTCGACCGTAACTATGGT+AGG - chr8_3:53236704-53236723 Msa1295210:intron 45.0%
CCGTAACTATGGTAGGCATT+TGG - chr8_3:53236711-53236730 Msa1295210:intron 45.0%
TATGAAGGATCCGGTATCTG+AGG - chr8_3:53236744-53236763 Msa1295210:intron 45.0%
GGTATCTGAGGATATCATGC+TGG - chr8_3:53236756-53236775 Msa1295210:intron 45.0%
GTACAGAATCCAGTGATTGG+AGG - chr8_3:53237117-53237136 Msa1295210:intron 45.0%
!! CTTTTGGCTGCTTCTTTTGC+TGG - chr8_3:53237183-53237202 Msa1295210:intron 45.0%
! TTTGGCTGCTTCTTTTGCTG+GGG - chr8_3:53237185-53237204 Msa1295210:intron 45.0%
!! GTGATTTGCTTGTTCGACAG+CGG - chr8_3:53237493-53237512 Msa1295210:intron 45.0%
TGGGAACAGCCTATCTAAGA+AGG + chr8_3:53237548-53237567 None:intergenic 45.0%
ACATTACCATTGTGGCAGCT+GGG + chr8_3:53237567-53237586 None:intergenic 45.0%
TACATTACCATTGTGGCAGC+TGG + chr8_3:53237568-53237587 None:intergenic 45.0%
! ACTTTGGCTGATGGAGGCAT+CGG - chr8_3:53234365-53234384 Msa1295210:three_prime_UTR 50.0%
TTGGTCCAGAACTGCTTCGT+TGG + chr8_3:53234432-53234451 None:intergenic 50.0%
AAGTGTACAGGGAGAAAGGC+TGG + chr8_3:53234612-53234631 None:intergenic 50.0%
CCGCTAACTCTCGGTTACAT+TGG - chr8_3:53234641-53234660 Msa1295210:intron 50.0%
! CTCTGGAAAAAGCAGAGCAC+AGG - chr8_3:53234755-53234774 Msa1295210:intron 50.0%
CTAATGTGGTTGCAAGTCCC+AGG + chr8_3:53235517-53235536 None:intergenic 50.0%
GCAACCACATTAGCACTGCT+CGG - chr8_3:53235524-53235543 Msa1295210:intron 50.0%
!!! AGGAGCGTCTTTTGCAGGAA+AGG - chr8_3:53235550-53235569 Msa1295210:intron 50.0%
AAGCAGCCACAGGTAATCCT+TGG + chr8_3:53235592-53235611 None:intergenic 50.0%
GTTAGGTGTGCAAGCATACC+TGG - chr8_3:53236196-53236215 Msa1295210:intron 50.0%
ATGCAAATGTAAGCCCAGCC+AGG + chr8_3:53236217-53236236 None:intergenic 50.0%
AACAGGTGTACTGCATGGTG+AGG + chr8_3:53236246-53236265 None:intergenic 50.0%
GCTAGAACAGGTGTACTGCA+TGG + chr8_3:53236251-53236270 None:intergenic 50.0%
! ACCTGTTCTAGCCACCCTTT+TGG - chr8_3:53236259-53236278 Msa1295210:intron 50.0%
! CCTGTTCTAGCCACCCTTTT+GGG - chr8_3:53236260-53236279 Msa1295210:intron 50.0%
AGCGACATATCCCAAAAGGG+TGG + chr8_3:53236273-53236292 None:intergenic 50.0%
!! TTCTTTTGCTGGGGCGTTAC+AGG - chr8_3:53237194-53237213 Msa1295210:intron 50.0%
CGTTTCGCAAGTACTCAGCA+TGG - chr8_3:53237333-53237352 Msa1295210:intron 50.0%
! TGCTTCGTTGGCCTGTTGTC+CGG + chr8_3:53234420-53234439 None:intergenic 55.0%
ACAGGCCAACGAAGCAGTTC+TGG - chr8_3:53234424-53234443 Msa1295210:three_prime_UTR 55.0%
TACGCCGAGCAGTGCTAATG+TGG + chr8_3:53235531-53235550 None:intergenic 55.0%
ACATTAGCACTGCTCGGCGT+AGG - chr8_3:53235530-53235549 Msa1295210:intron 55.0%
GGATTACCTGTGGCTGCTTC+TGG - chr8_3:53235593-53235612 Msa1295210:intron 55.0%
! ACCTGTGGCTGCTTCTGGTT+TGG - chr8_3:53235598-53235617 Msa1295210:intron 55.0%
GTGTGCAAGCATACCTGGCT+GGG - chr8_3:53236201-53236220 Msa1295210:intron 55.0%
CCCAAAAGGGTGGCTAGAAC+AGG + chr8_3:53236263-53236282 None:intergenic 55.0%
GGGATATGTCGCTGCATCCA+AGG - chr8_3:53236280-53236299 Msa1295210:intron 55.0%
AGCAAGCTGCCTCCAATCAC+TGG + chr8_3:53237129-53237148 None:intergenic 55.0%
GACAGCGGAGCAATGCTGTT+AGG - chr8_3:53237508-53237527 Msa1295210:intron 55.0%
AGCGGAGCAATGCTGTTAGG+AGG - chr8_3:53237511-53237530 Msa1295210:intron 55.0%
GGAGCAATGCTGTTAGGAGG+TGG - chr8_3:53237514-53237533 Msa1295210:intron 55.0%
!! CTGATGGAGGCATCGGTGAC+TGG - chr8_3:53234372-53234391 Msa1295210:three_prime_UTR 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG - chr8_3:53234377-53234396 Msa1295210:three_prime_UTR 60.0%
!! GGCATCGGTGACTGGTTTGG+AGG - chr8_3:53234380-53234399 Msa1295210:three_prime_UTR 60.0%
!!! ATGGCAGGGGCTTTTGGCTC+TGG - chr8_3:53234738-53234757 Msa1295210:intron 60.0%
!!! GGCGTAGGAGCGTCTTTTGC+AGG - chr8_3:53235545-53235564 Msa1295210:intron 60.0%
GCCAAACCAGAAGCAGCCAC+AGG + chr8_3:53235602-53235621 None:intergenic 60.0%
GGTGTGCAAGCATACCTGGC+TGG - chr8_3:53236200-53236219 Msa1295210:intron 60.0%
GCTGTTCCCAGCTGCCACAA+TGG - chr8_3:53237558-53237577 Msa1295210:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53234347 53237723 53234347 ID=Msa1295210;Name=Msa1295210
chr8_3 mRNA 53234347 53237723 53234347 ID=Msa1295210-mRNA-1;Parent=Msa1295210;Name=Msa1295210-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.77|0.7|1|1|1|10|135|241
chr8_3 exon 53234347 53234557 53234347 ID=Msa1295210-mRNA-1:exon:15296;Parent=Msa1295210-mRNA-1
chr8_3 exon 53234701 53234747 53234701 ID=Msa1295210-mRNA-1:exon:15295;Parent=Msa1295210-mRNA-1
chr8_3 exon 53234855 53234947 53234855 ID=Msa1295210-mRNA-1:exon:15294;Parent=Msa1295210-mRNA-1
chr8_3 exon 53235769 53235869 53235769 ID=Msa1295210-mRNA-1:exon:15293;Parent=Msa1295210-mRNA-1
chr8_3 exon 53235957 53236029 53235957 ID=Msa1295210-mRNA-1:exon:15292;Parent=Msa1295210-mRNA-1
chr8_3 exon 53236421 53236503 53236421 ID=Msa1295210-mRNA-1:exon:15291;Parent=Msa1295210-mRNA-1
chr8_3 exon 53237115 53237121 53237115 ID=Msa1295210-mRNA-1:exon:15290;Parent=Msa1295210-mRNA-1
chr8_3 exon 53237294 53237325 53237294 ID=Msa1295210-mRNA-1:exon:15289;Parent=Msa1295210-mRNA-1
chr8_3 exon 53237408 53237493 53237408 ID=Msa1295210-mRNA-1:exon:15288;Parent=Msa1295210-mRNA-1
chr8_3 exon 53237596 53237723 53237596 ID=Msa1295210-mRNA-1:exon:15287;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53237596 53237723 53237596 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53237408 53237493 53237408 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53237294 53237325 53237294 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53237115 53237121 53237115 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53236421 53236503 53236421 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53235957 53236029 53235957 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53235769 53235869 53235769 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53234855 53234947 53234855 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53234701 53234747 53234701 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 CDS 53234482 53234557 53234482 ID=Msa1295210-mRNA-1:cds;Parent=Msa1295210-mRNA-1
chr8_3 three_prime_UTR 53234347 53234481 53234347 ID=Msa1295210-mRNA-1:three_prime_utr;Parent=Msa1295210-mRNA-1
Gene Sequence

>Msa1295210

ATGGTTGCTCCTGTTTTTACTTTGGCTGATGGAGGCATCGGTGACTGGTTTGGAGGCATTCTATTTTCAGCCGGACAACAGGCCAACGAAGCAGTTCTGGACCAACTATCGTCCTTAAGTTTTACTAGTTTGGCTGTAATTTATGGGGCAGGACTTGTAACCAGCCTTTCTCCCTGTACACTTAGTGTGTTACCGCTAACTCTCGGTTACATTGGGGCTTTTGGCTCTGGAAAAAGCAGAGCACAGGTGAAAGGAAAGGCTTATGGACAAATTGGCCAAGGATTACCTGTGGCTGCTTCTGGTTTGGCTGTAATTATGGGTCTGAACCTTCTTGAGATCATTGAATTACAGCTCCCCTCATTCTTCGACAGTTTTGATCCAAAATCAGTTGCCGCCAATTTTCCATCAAGTGTGCAAGCATACCTGGCTGGGCTTACATTTGCATTAGCTGCCTCACCATGCAGTACACCTGTTCTAGCCACCCTTTTGGGATATGTCGCTGCATCCAAGAATCCAGTGATTGGAGGCAGCTTGCTTTTGACATACACAACAGGATACATCTCTCCCTTACTTTTGGCTGCTTCTTTTGCTGGGGCGTTACAGAGCTTGCTTTCGTTTCGCAAGTACTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGAGGTGGTGCATATACCTTCTTAGATAGGCTGTTCCCAGCTGCCACAATGGTAATGTAG

Protein sequence

>Msa1295210

MVAPVFTLADGGIGDWFGGILFSAGQQANEAVLDQLSSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVKGKAYGQIGQGLPVAASGLAVIMGLNLLEIIELQLPSFFDSFDPKSVAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKNPVIGGSLLLTYTTGYISPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGGAYTFLDRLFPAATMVM*