AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136180 MtrunA17_Chr1g0207341 97.043 372 11 0 1 372 1 372 0.0 757
Msa0136180 MtrunA17_Chr7g0272191 42.791 215 114 3 125 337 86 293 9.20e-42 149
Msa0136180 MtrunA17_Chr4g0055551 41.919 198 112 3 144 341 94 288 1.28e-40 145
Msa0136180 MtrunA17_Chr5g0409311 33.690 187 114 2 150 336 83 259 2.99e-28 112
Msa0136180 MtrunA17_Chr7g0251451 32.447 188 117 2 149 336 73 250 2.23e-26 107
Msa0136180 MtrunA17_Chr4g0038261 30.220 182 117 2 155 336 45 216 1.53e-22 95.1
Msa0136180 MtrunA17_Chr4g0056771 31.868 182 114 2 155 336 95 266 1.51e-21 93.6
Msa0136180 MtrunA17_Chr7g0270061 32.402 179 111 2 158 336 111 279 1.76e-20 90.9
Msa0136180 MtrunA17_Chr1g0194601 31.844 179 112 2 158 336 114 282 6.60e-19 86.3
Msa0136180 MtrunA17_Chr4g0034751 28.415 183 119 4 155 336 99 270 1.47e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136180 AT1G49970.1 64.439 374 121 6 8 373 17 386 3.20e-168 475
Msa0136180 AT1G09130.2 45.833 192 101 2 148 337 114 304 3.24e-55 184
Msa0136180 AT1G09130.1 45.833 192 101 2 148 337 114 304 3.24e-55 184
Msa0136180 AT1G09130.3 45.833 192 101 2 148 337 114 304 1.02e-54 184
Msa0136180 AT4G17040.1 42.857 189 106 2 153 341 103 289 6.60e-50 170
Msa0136180 AT5G45390.1 34.112 214 118 4 150 353 74 274 2.00e-30 118
Msa0136180 AT5G23140.1 30.220 182 117 2 155 336 48 219 9.23e-24 99.0
Msa0136180 AT1G12410.1 31.868 182 114 2 155 336 89 260 1.28e-22 96.7
Msa0136180 AT1G66670.1 30.769 182 116 2 155 336 85 256 1.67e-22 97.1
Msa0136180 AT1G02560.1 32.961 179 110 2 158 336 117 285 2.91e-20 90.5
Msa0136180 AT1G11750.1 28.108 185 123 2 152 336 93 267 5.02e-19 86.3
Msa0136180 AT1G11750.2 28.108 185 123 2 152 336 111 285 1.46e-18 85.5
Msa0136180 ATCG00670.1 22.396 192 140 1 144 335 11 193 7.57e-12 64.3

Find 152 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTCTTATTACATATT+TGG 0.088554 1_3:-67982177 Msa0136180:three_prime_UTR
CACTTGATCTGTGGACTTTC+GGG 0.154950 1_3:+67983040 None:intergenic
TTCATCTGCCAAAAGTTATT+TGG 0.171304 1_3:-67984480 Msa0136180:CDS
CCAAAACCACCAATCTTTAA+AGG 0.224803 1_3:+67982489 None:intergenic
CTGCTTGACCTTTCTATATT+AGG 0.234612 1_3:+67982454 None:intergenic
CCACTTGATCTGTGGACTTT+CGG 0.248148 1_3:+67983039 None:intergenic
CTTCTTTGCTCTTGGATTCT+CGG 0.258979 1_3:-67984331 Msa0136180:CDS
CCTTTAAAGATTGGTGGTTT+TGG 0.273023 1_3:-67982489 Msa0136180:three_prime_UTR
AACCCTCAAGCGGCTCCTTC+AGG 0.297867 1_3:-67982569 Msa0136180:CDS
ATTATTCTTATTACATATTT+GGG 0.297962 1_3:-67982176 Msa0136180:three_prime_UTR
TGATGTCTACACTGTGAATT+TGG 0.305379 1_3:-67983732 Msa0136180:CDS
TATTTATATATTAATTCGTC+TGG 0.315416 1_3:-67984087 Msa0136180:CDS
GGATTTGCCTTCTTTGCTCT+TGG 0.316410 1_3:-67984339 Msa0136180:CDS
TGTTGCAGATATGTGGATTA+AGG 0.318648 1_3:-67983013 Msa0136180:intron
CTGTATCTGTACATTGGCTC+TGG 0.323741 1_3:-67982371 Msa0136180:three_prime_UTR
TACAGACTCTAAACATTAAC+TGG 0.341309 1_3:+67982389 None:intergenic
AGCGGCTCCTTCAGGACTTT+AGG 0.348211 1_3:-67982561 Msa0136180:exon
AAACATTTGAAATAAGAATA+AGG 0.361322 1_3:+67982105 None:intergenic
GTGAATTTGGCCATGGCGTT+TGG 0.365449 1_3:-67983719 Msa0136180:CDS
GAGCTGTTGGCAAAAGGAAC+AGG 0.366364 1_3:-67982853 Msa0136180:CDS
ACTATGAGCCAAATAACTTT+TGG 0.372169 1_3:+67984472 None:intergenic
TATAAATAAACAGGTTTGGC+AGG 0.373031 1_3:+67984102 None:intergenic
AAATCCGGTGGAGCATTTCT+AGG 0.377469 1_3:+67984356 None:intergenic
TACAGAGGAGGTAGGGGAAC+AGG 0.379885 1_3:-67984383 Msa0136180:CDS
TATCCAATGCCTTTAAAGAT+TGG 0.380730 1_3:-67982498 Msa0136180:three_prime_UTR
CTTATTTCAAATGTTTATGC+TGG 0.383546 1_3:-67982098 Msa0136180:three_prime_UTR
GTCAGCGAGTCCGTATTCTA+TGG 0.389727 1_3:+67982768 None:intergenic
ACTGCTTGGGGATGCGGTCG+AGG 0.392918 1_3:+67986400 None:intergenic
GTCCTGAAGGAGCCGCTTGA+GGG 0.407697 1_3:+67982567 None:intergenic
CCACCAATCTTTAAAGGCAT+TGG 0.408319 1_3:+67982495 None:intergenic
AATATATAAATAAACAGGTT+TGG 0.409111 1_3:+67984098 None:intergenic
GATTCTCGGATATGTTATCT+TGG 0.415479 1_3:-67984317 Msa0136180:CDS
TCTGGCTCAACTTATGTGGT+TGG 0.418871 1_3:-67984136 Msa0136180:CDS
ACATCATACCCTAACCAGTT+TGG 0.419223 1_3:-67986574 Msa0136180:five_prime_UTR
GTCTGAACTGCTTGGGGATG+CGG 0.420074 1_3:+67986394 None:intergenic
ACATTGTAACCAAACTGGTT+AGG 0.423064 1_3:+67986565 None:intergenic
TGAGTATTACATTGAGCTGT+TGG 0.425511 1_3:-67982866 Msa0136180:CDS
TAGAGAAAATGACTAGGCCT+TGG 0.426980 1_3:-67982295 Msa0136180:three_prime_UTR
TATTAATTCGTCTGGGACTC+AGG 0.429397 1_3:-67984079 Msa0136180:intron
GTGGCAGTGGCGTGAGGAAA+TGG 0.429760 1_3:+67986465 None:intergenic
GGTTTAGTCTTGGTTTAAGT+GGG 0.433438 1_3:-67986622 None:intergenic
AATGCACCGCAGTTTCTATA+TGG 0.439793 1_3:-67985177 Msa0136180:CDS
GTGTATAGAATCTTCTAATA+CGG 0.441826 1_3:+67982127 None:intergenic
TCGCGGTTTGCGTGTGGCAG+TGG 0.446692 1_3:+67986452 None:intergenic
AGAGAAAATGACTAGGCCTT+GGG 0.448844 1_3:-67982294 Msa0136180:three_prime_UTR
TACATTGAGCTGTTGGCAAA+AGG 0.452233 1_3:-67982859 Msa0136180:CDS
CATTGTAACCAAACTGGTTA+GGG 0.452557 1_3:+67986566 None:intergenic
TAGTATGTACAGAGGAGGTA+GGG 0.452744 1_3:-67984390 Msa0136180:CDS
AGAGCACTGCGGAGAGGTGG+TGG 0.456289 1_3:-67982593 Msa0136180:CDS
TGGTTTAGTCTTGGTTTAAG+TGG 0.457871 1_3:-67986623 None:intergenic
ATTCATCATCACATTGATAA+CGG 0.457880 1_3:+67982242 None:intergenic
TGAATGGTGATATTTCCATT+TGG 0.458893 1_3:+67982412 None:intergenic
AGAAGACATTGTAACCAAAC+TGG 0.459344 1_3:+67986560 None:intergenic
GAATTAATATATAAATAAAC+AGG 0.462866 1_3:+67984093 None:intergenic
AAGAGCAAAGAAGGCAAATC+CGG 0.464258 1_3:+67984341 None:intergenic
AAAATAATGTATTCAATGGA+TGG 0.467679 1_3:-67982745 Msa0136180:CDS
AAAAGTTATTTGGCTCATAG+TGG 0.470154 1_3:-67984470 Msa0136180:CDS
CGAGAATCCAAGAGCAAAGA+AGG 0.470196 1_3:+67984332 None:intergenic
TTAGTATGTACAGAGGAGGT+AGG 0.470751 1_3:-67984391 Msa0136180:CDS
TGTATCTGTACATTGGCTCT+GGG 0.472404 1_3:-67982370 Msa0136180:three_prime_UTR
TGTATAGAATCTTCTAATAC+GGG 0.472592 1_3:+67982128 None:intergenic
CCAATGCCTTTAAAGATTGG+TGG 0.475237 1_3:-67982495 Msa0136180:three_prime_UTR
TTATTCTGGCTCAACTTATG+TGG 0.478590 1_3:-67984140 Msa0136180:CDS
TGGTCTTAATCCCTCGCAAA+TGG 0.479774 1_3:-67985157 Msa0136180:CDS
AGCCGTGACAGAACTTATTC+TGG 0.484856 1_3:-67984154 Msa0136180:CDS
CGGGGAACAAGGTGTGCATT+AGG 0.486233 1_3:+67982147 None:intergenic
TGACAAAATAATGTATTCAA+TGG 0.491221 1_3:-67982749 Msa0136180:CDS
GCAGAGATCTTCACATATCA+AGG 0.491667 1_3:-67982435 Msa0136180:three_prime_UTR
CTTCACATATCAAGGCCAAA+TGG 0.492075 1_3:-67982427 Msa0136180:three_prime_UTR
CTTTCAGACATCTGATGCAC+AGG 0.493491 1_3:+67985111 None:intergenic
TTATTTCAAATGTTTATGCT+GGG 0.496512 1_3:-67982097 Msa0136180:three_prime_UTR
AAATAATGTATTCAATGGAT+GGG 0.504597 1_3:-67982744 Msa0136180:CDS
TTTCCTGTCTGAACTGCTTG+GGG 0.509693 1_3:+67986388 None:intergenic
AGACAGGAAAATCTCAAAGA+TGG 0.509874 1_3:-67986375 Msa0136180:CDS
GTGGTTCTGTTGCAGATATG+TGG 0.509883 1_3:-67983020 Msa0136180:CDS
GTTGGAAATATCTAGTCCTC+TGG 0.517296 1_3:+67982800 None:intergenic
CTGCTTGGGGATGCGGTCGA+GGG 0.519626 1_3:+67986401 None:intergenic
GCAGCAATGATTCTGTCTGT+TGG 0.520589 1_3:-67983692 Msa0136180:CDS
TCTAAACATTAACTGGTGAA+TGG 0.521354 1_3:+67982396 None:intergenic
TAGAGTCTGTATCTGTACAT+TGG 0.525719 1_3:-67982377 Msa0136180:three_prime_UTR
CCACAGGATGCCATAGAATA+CGG 0.527539 1_3:-67982778 Msa0136180:CDS
AGTCCTGAAGGAGCCGCTTG+AGG 0.528742 1_3:+67982566 None:intergenic
ATTCTATGGCATCCTGTGGT+TGG 0.530734 1_3:+67982782 None:intergenic
TGCTGCTTGGCCAAACGCCA+TGG 0.533193 1_3:+67983709 None:intergenic
ATTTATATATTAATTCGTCT+GGG 0.544932 1_3:-67984086 Msa0136180:CDS
ATGCATACAGGCAAAAGAGC+TGG 0.551754 1_3:-67982899 Msa0136180:intron
AGTCGACGCCTAATATAGAA+AGG 0.554299 1_3:-67982462 Msa0136180:three_prime_UTR
CATCCCCAAGCAGTTCAGAC+AGG 0.554637 1_3:-67986391 Msa0136180:CDS
GTGATGATGAATGAACTTCA+TGG 0.555343 1_3:-67982231 Msa0136180:three_prime_UTR
GATATGTTATCTTGGTATGC+CGG 0.559052 1_3:-67984309 Msa0136180:intron
AGTATGTACAGAGGAGGTAG+GGG 0.560039 1_3:-67984389 Msa0136180:CDS
TACAGAAATCATATCAGCGA+TGG 0.561888 1_3:+67983917 None:intergenic
CTCTAGTTGAAACAAAGCAC+GGG 0.563265 1_3:+67982313 None:intergenic
GTTGAAGAATCGTGGATGAA+TGG 0.565697 1_3:+67986513 None:intergenic
TATGAACATGTCCATTTGCG+AGG 0.567121 1_3:+67985146 None:intergenic
TCTCTAGTTGAAACAAAGCA+CGG 0.569602 1_3:+67982312 None:intergenic
GAAGCATCGCGGTTTGCGTG+TGG 0.571479 1_3:+67986446 None:intergenic
AGAATAAGTTCTGTCACGGC+TGG 0.572475 1_3:+67984156 None:intergenic
CAACAGAACCACTTGATCTG+TGG 0.572805 1_3:+67983031 None:intergenic
AATAATGTATTCAATGGATG+GGG 0.574540 1_3:-67982743 Msa0136180:CDS
AAAGTTATTTGGCTCATAGT+GGG 0.574872 1_3:-67984469 Msa0136180:CDS
ATCTTCTAATACGGGGAACA+AGG 0.575091 1_3:+67982136 None:intergenic
GAAATTACCTAAAGTCCTGA+AGG 0.577509 1_3:+67982554 None:intergenic
TTGCGTGTGGCAGTGGCGTG+AGG 0.577740 1_3:+67986459 None:intergenic
ATGGAAGAAGCTTAGTTCCA+TGG 0.578049 1_3:+67986484 None:intergenic
GAGGGAGCAGTTAAAAGAAA+AGG 0.578090 1_3:+67986419 None:intergenic
ATAAATAAACAGGTTTGGCA+GGG 0.579322 1_3:+67984103 None:intergenic
AGCATCAGTTTCTGATCCCA+CGG 0.581104 1_3:+67983944 None:intergenic
TATCTGTACATTGGCTCTGG+GGG 0.582079 1_3:-67982368 Msa0136180:three_prime_UTR
GGAGAGTGCATATGAGAAGC+GGG 0.582911 1_3:-67982722 Msa0136180:intron
CAGACAGAATCATTGCTGCT+TGG 0.583497 1_3:+67983696 None:intergenic
CAAAGAGCACTGCGGAGAGG+TGG 0.584526 1_3:-67982596 Msa0136180:CDS
TAATAAGAATAATGAAACAA+AGG 0.585811 1_3:+67982186 None:intergenic
GTATCTGTACATTGGCTCTG+GGG 0.587270 1_3:-67982369 Msa0136180:three_prime_UTR
CCGAAAGTCCACAGATCAAG+TGG 0.588356 1_3:-67983039 Msa0136180:CDS
ATGAACATGTCCATTTGCGA+GGG 0.596674 1_3:+67985147 None:intergenic
GATTCTTCAACTACTCGCCA+TGG 0.599171 1_3:-67986501 Msa0136180:CDS
GGCGAGTAGTTGAAGAATCG+TGG 0.602735 1_3:+67986505 None:intergenic
GATGAGTAGTGTATCTAGCA+TGG 0.604215 1_3:-67984447 Msa0136180:CDS
GACTAGATATTTCCAACCAC+AGG 0.605387 1_3:-67982794 Msa0136180:CDS
AGCCAGAATAAGTTCTGTCA+CGG 0.605778 1_3:+67984152 None:intergenic
TTAGGGTATGATGTGTTCAC+CGG 0.606142 1_3:+67986583 None:intergenic
GAGCACTGCGGAGAGGTGGT+GGG 0.606710 1_3:-67982592 Msa0136180:CDS
GGGTGTAAGAAGATAATAGC+CGG 0.607204 1_3:-67986602 Msa0136180:five_prime_UTR
AAGGCCTAGAAATGCTCCAC+CGG 0.607493 1_3:-67984360 Msa0136180:CDS
GGGAGAGTGCATATGAGAAG+CGG 0.623402 1_3:-67982723 Msa0136180:CDS
GAGGAGGTAGGGGAACAGGA+AGG 0.626447 1_3:-67984379 Msa0136180:CDS
GAGAAAATGACTAGGCCTTG+GGG 0.626649 1_3:-67982293 Msa0136180:three_prime_UTR
AGCAAAGAAGGCAAATCCGG+TGG 0.627505 1_3:+67984344 None:intergenic
CTACACTGTGAATTTGGCCA+TGG 0.627831 1_3:-67983726 Msa0136180:CDS
ATTCTTATTACATATTTGGG+TGG 0.628455 1_3:-67982173 Msa0136180:three_prime_UTR
AAAAGGAACAGGGAAGTCAA+AGG 0.631649 1_3:-67982842 Msa0136180:CDS
AGGTGGTGGGAACCCTCAAG+CGG 0.634420 1_3:-67982579 Msa0136180:CDS
GAATGAGAAGAATGAGACCG+TGG 0.634632 1_3:-67983961 Msa0136180:CDS
AGCTGTTGGCAAAAGGAACA+GGG 0.636658 1_3:-67982852 Msa0136180:CDS
CCGTATTCTATGGCATCCTG+TGG 0.639047 1_3:+67982778 None:intergenic
AGTGTTAGTATGTACAGAGG+AGG 0.639107 1_3:-67984395 Msa0136180:CDS
ACTTCAGAAAATAATCCCCA+AGG 0.654329 1_3:+67982278 None:intergenic
AATGAGAAGAATGAGACCGT+GGG 0.661371 1_3:-67983960 Msa0136180:CDS
CATACAGGCAAAAGAGCTGG+AGG 0.663306 1_3:-67982896 Msa0136180:intron
GATGTCTGAAAGAGTTACAG+AGG 0.663589 1_3:-67985100 Msa0136180:intron
ATGAGTGTTAGTATGTACAG+AGG 0.665010 1_3:-67984398 Msa0136180:CDS
GGATACTTACTGGATGAATG+TGG 0.665949 1_3:+67983644 None:intergenic
GCTCAAAGAGCACTGCGGAG+AGG 0.670869 1_3:-67982599 Msa0136180:CDS
ATGAATGTGGCAGTACAGCA+CGG 0.671866 1_3:+67983657 None:intergenic
AAATTGCTAAAGACGTCCAG+AGG 0.678617 1_3:-67982816 Msa0136180:CDS
GAAAAGGACTTGAAGCATCG+CGG 0.687598 1_3:+67986435 None:intergenic
TTCAACTAGAGAAAATGACT+AGG 0.702147 1_3:-67982301 Msa0136180:three_prime_UTR
ATGAATGGTGAAGAGAGTGA+TGG 0.712432 1_3:+67986528 None:intergenic
TTAAGACCATATAGAAACTG+CGG 0.725517 1_3:+67985171 None:intergenic
GTATAGAATCTTCTAATACG+GGG 0.735971 1_3:+67982129 None:intergenic
TACGTGCTCAAAGAGCACTG+CGG 0.848626 1_3:-67982604 Msa0136180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAGAATTAGAAAAAA+TGG + chr1_3:67982394-67982413 None:intergenic 10.0%
!! TTTGAATATATTTATCATTT+GGG + chr1_3:67983409-67983428 None:intergenic 10.0%
!! GAATTAATATATAAATAAAC+AGG + chr1_3:67984620-67984639 None:intergenic 10.0%
!!! TTCTATTTATTGATTATATT+CGG - chr1_3:67985785-67985804 Msa0136180:intron 10.0%
!! ATTATTCTTATTACATATTT+GGG - chr1_3:67986534-67986553 Msa0136180:CDS 10.0%
!! TAATTCTAATTTACTCTATT+GGG - chr1_3:67982401-67982420 Msa0136180:three_prime_UTR 15.0%
!! TAAGTTTCAAAAGTAAAAAT+TGG - chr1_3:67982672-67982691 Msa0136180:intron 15.0%
!! TTAATTTAGATGAGAAAATT+AGG - chr1_3:67983365-67983384 Msa0136180:intron 15.0%
!! GTTTGAATATATTTATCATT+TGG + chr1_3:67983410-67983429 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+AGG + chr1_3:67983996-67984015 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG + chr1_3:67983996-67984015 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG - chr1_3:67983996-67984015 Msa0136180:intron 15.0%
!! AAAATATTGAAAGGATATAA+AGG + chr1_3:67984071-67984090 None:intergenic 15.0%
!! CAAAATATATTTACATACAT+AGG + chr1_3:67984492-67984511 None:intergenic 15.0%
!! AATATATAAATAAACAGGTT+TGG + chr1_3:67984615-67984634 None:intergenic 15.0%
!! TATTTATATATTAATTCGTC+TGG - chr1_3:67984623-67984642 Msa0136180:intron 15.0%
!! ATTTATATATTAATTCGTCT+GGG - chr1_3:67984624-67984643 Msa0136180:intron 15.0%
!! TATGTGGTTATTTATATAAA+TGG - chr1_3:67984700-67984719 Msa0136180:intron 15.0%
!!! ATATGATTCATGAATATTTT+TGG - chr1_3:67985374-67985393 Msa0136180:intron 15.0%
!!! TCTATTTATTGATTATATTC+GGG - chr1_3:67985786-67985805 Msa0136180:intron 15.0%
!! TATAATGCATGAAATAATTA+TGG + chr1_3:67986046-67986065 None:intergenic 15.0%
!! TAATAAGAATAATGAAACAA+AGG + chr1_3:67986527-67986546 None:intergenic 15.0%
!! CATTATTCTTATTACATATT+TGG - chr1_3:67986533-67986552 Msa0136180:CDS 15.0%
!!! AAACATTTGAAATAAGAATA+AGG + chr1_3:67986608-67986627 None:intergenic 15.0%
!! CTAATTCTAATTTACTCTAT+TGG - chr1_3:67982400-67982419 Msa0136180:three_prime_UTR 20.0%
!!! AAAAAAAGCAACTTTTAATC+CGG - chr1_3:67982471-67982490 Msa0136180:three_prime_UTR 20.0%
!!! TGGAATTGATTTTTTGTTTA+TGG - chr1_3:67982611-67982630 Msa0136180:CDS 20.0%
!! AACATCAACATAAACTAAAT+AGG + chr1_3:67983043-67983062 None:intergenic 20.0%
!! TTTACGAAACTAAAAACTAA+AGG + chr1_3:67983098-67983117 None:intergenic 20.0%
!! AAAGTTTACTTAAGAAGAAT+TGG - chr1_3:67983288-67983307 Msa0136180:intron 20.0%
!! AAGTTTACTTAAGAAGAATT+GGG - chr1_3:67983289-67983308 Msa0136180:intron 20.0%
!!! AATTGAATAGTTTGAAACTT+GGG - chr1_3:67983448-67983467 Msa0136180:intron 20.0%
!! AAGATAAAATGTCAAGATTA+GGG + chr1_3:67983481-67983500 None:intergenic 20.0%
!! TAAGATAAAATGTCAAGATT+AGG + chr1_3:67983482-67983501 None:intergenic 20.0%
!! GAAACCTAAAATAAACATAA+GGG + chr1_3:67984027-67984046 None:intergenic 20.0%
!! TGAAACCTAAAATAAACATA+AGG + chr1_3:67984026-67984045 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr1_3:67983707-67983726 Msa0136180:CDS 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG + chr1_3:67983995-67984014 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr1_3:67983707-67983726 Msa0136180:CDS 20.0%
!!! TTGAAAACTTTAAAACGTAA+GGG - chr1_3:67983967-67983986 Msa0136180:intron 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG + chr1_3:67983707-67983726 None:intergenic 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG - chr1_3:67983995-67984014 Msa0136180:intron 20.0%
!! TGAAACCTAAAATAAACATA+AGG - chr1_3:67984026-67984045 Msa0136180:intron 20.0%
!! GAAACCTAAAATAAACATAA+GGG - chr1_3:67984027-67984046 Msa0136180:intron 20.0%
!! TGACTTAACAAAATATTGAA+AGG + chr1_3:67984080-67984099 None:intergenic 20.0%
!!! ATTTGTCTAATTATTGATTG+TGG - chr1_3:67984116-67984135 Msa0136180:CDS 20.0%
!! AGATAAAAACAAAACATATC+AGG + chr1_3:67984434-67984453 None:intergenic 20.0%
!!! TTTTGTTTTTATCTCAATCT+TGG - chr1_3:67984440-67984459 Msa0136180:CDS 20.0%
!! AAAAAAATATTAGGAAGAGT+AGG + chr1_3:67984930-67984949 None:intergenic 20.0%
!!! AATTATTTATCGTGTCTTTT+TGG - chr1_3:67985316-67985335 Msa0136180:intron 20.0%
!! TCATATTTATAAAACCTAGA+AGG + chr1_3:67985360-67985379 None:intergenic 20.0%
!! TGACAAAATAATGTATTCAA+TGG - chr1_3:67985961-67985980 Msa0136180:intron 20.0%
!! AAAATAATGTATTCAATGGA+TGG - chr1_3:67985965-67985984 Msa0136180:intron 20.0%
!! AAATAATGTATTCAATGGAT+GGG - chr1_3:67985966-67985985 Msa0136180:intron 20.0%
!! AAAAAAGCAACTTTTAATCC+GGG - chr1_3:67982472-67982491 Msa0136180:three_prime_UTR 25.0%
! CAATTCCACAATAAAATTGA+TGG + chr1_3:67982599-67982618 None:intergenic 25.0%
! ACTTAACAGATGTAAACTAT+AGG + chr1_3:67982657-67982676 None:intergenic 25.0%
! AACTAAATAGGAAACAAAGA+CGG + chr1_3:67983031-67983050 None:intergenic 25.0%
!!! ATGTTATTTTGTTGTAGCTT+TGG - chr1_3:67983072-67983091 Msa0136180:intron 25.0%
! TTTGCTTGTAAACACAATAT+AGG - chr1_3:67983180-67983199 Msa0136180:intron 25.0%
! TTGCTTGTAAACACAATATA+GGG - chr1_3:67983181-67983200 Msa0136180:intron 25.0%
! TGGGTAAATGTTATTATGTA+AGG - chr1_3:67983321-67983340 Msa0136180:intron 25.0%
! TATTATGTAAGGCTTGAAAT+TGG - chr1_3:67983332-67983351 Msa0136180:intron 25.0%
! TTTAGATGAGAAAATTAGGA+AGG - chr1_3:67983369-67983388 Msa0136180:intron 25.0%
!! CAATTGAATAGTTTGAAACT+TGG - chr1_3:67983447-67983466 Msa0136180:intron 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - chr1_3:67983678-67983697 Msa0136180:CDS 25.0%
! ACTAGACCTTATAAAGATTT+GGG - chr1_3:67983802-67983821 Msa0136180:intron 25.0%
! TGTTAACCCAAATCTTTATA+AGG + chr1_3:67983811-67983830 None:intergenic 25.0%
! ATTAAACTCAATATCATGTC+AGG - chr1_3:67983900-67983919 Msa0136180:intron 25.0%
! TTAAACTCAATATCATGTCA+GGG - chr1_3:67983901-67983920 Msa0136180:intron 25.0%
!!! CTTGAAAACTTTAAAACGTA+AGG - chr1_3:67983966-67983985 Msa0136180:intron 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr1_3:67983678-67983697 None:intergenic 25.0%
!!! TGATCCCTTATGTTTATTTT+AGG + chr1_3:67984034-67984053 None:intergenic 25.0%
! GTAAAAAGATGAAATCATCA+AGG + chr1_3:67984467-67984486 None:intergenic 25.0%
! AATCTGTACGAATCATAAAA+GGG + chr1_3:67984531-67984550 None:intergenic 25.0%
! TCCTTGTAATGTATAATATG+TGG - chr1_3:67984684-67984703 Msa0136180:intron 25.0%
! ACCACATATTATACATTACA+AGG + chr1_3:67984688-67984707 None:intergenic 25.0%
! TGAAAGGGGAAAAAAATATT+AGG + chr1_3:67984939-67984958 None:intergenic 25.0%
!! TGATATACTATAGGTTGAAA+GGG + chr1_3:67984954-67984973 None:intergenic 25.0%
!! TTGATATACTATAGGTTGAA+AGG + chr1_3:67984955-67984974 None:intergenic 25.0%
! CATCAGATTTGATATACTAT+AGG + chr1_3:67984963-67984982 None:intergenic 25.0%
!!! TCATGAATATTTTTGGAGAA+AGG - chr1_3:67985381-67985400 Msa0136180:intron 25.0%
!! TACTGTCTCTATTATTGTTT+TGG - chr1_3:67985759-67985778 Msa0136180:intron 25.0%
! AATAATGTATTCAATGGATG+GGG - chr1_3:67985967-67985986 Msa0136180:intron 25.0%
! ATTCATCATCACATTGATAA+CGG + chr1_3:67986471-67986490 None:intergenic 25.0%
! ATTCTTATTACATATTTGGG+TGG - chr1_3:67986537-67986556 Msa0136180:CDS 25.0%
! TGTATAGAATCTTCTAATAC+GGG + chr1_3:67986585-67986604 None:intergenic 25.0%
! GTGTATAGAATCTTCTAATA+CGG + chr1_3:67986586-67986605 None:intergenic 25.0%
! CTTATTTCAAATGTTTATGC+TGG - chr1_3:67986612-67986631 Msa0136180:five_prime_UTR 25.0%
TTCCACAATAAAATTGATGG+AGG + chr1_3:67982596-67982615 None:intergenic 30.0%
!!! AAATCTGCTACTGGTTTTAA+GGG + chr1_3:67982707-67982726 None:intergenic 30.0%
!!! AAAATCTGCTACTGGTTTTA+AGG + chr1_3:67982708-67982727 None:intergenic 30.0%
ACTAAATAGGAAACAAAGAC+GGG + chr1_3:67983030-67983049 None:intergenic 30.0%
TACTTAAGAAGAATTGGGAA+TGG - chr1_3:67983294-67983313 Msa0136180:intron 30.0%
ACTTAAGAAGAATTGGGAAT+GGG - chr1_3:67983295-67983314 Msa0136180:intron 30.0%
TTATGTATCATATGCAGTGA+TGG - chr1_3:67983499-67983518 Msa0136180:intron 30.0%
TTAAGACCATATAGAAACTG+CGG + chr1_3:67983542-67983561 None:intergenic 30.0%
AGGTTCTCATCATTTATATC+CGG - chr1_3:67983630-67983649 Msa0136180:intron 30.0%
!! TGGTCCCTTATGTTTATTTT+AGG - chr1_3:67983667-67983686 Msa0136180:CDS 30.0%
ATCTTTATAAGGTCTAGTGA+CGG + chr1_3:67983800-67983819 None:intergenic 30.0%
CACTAGACCTTATAAAGATT+TGG - chr1_3:67983801-67983820 Msa0136180:intron 30.0%
! AAAGATTTGGGTTAACAATG+CGG - chr1_3:67983814-67983833 Msa0136180:intron 30.0%
! TTCCAACGTGAATAACATTT+TGG - chr1_3:67983938-67983957 Msa0136180:CDS 30.0%
ATCCAAAATGTTATTCACGT+TGG + chr1_3:67983943-67983962 None:intergenic 30.0%
AATACGCGGTGATAAAATTT+GGG + chr1_3:67984160-67984179 None:intergenic 30.0%
AAATACGCGGTGATAAAATT+TGG + chr1_3:67984161-67984180 None:intergenic 30.0%
TATAGTGTTAGTGATTTGAC+AGG - chr1_3:67984200-67984219 Msa0136180:intron 30.0%
TTCATCTGCCAAAAGTTATT+TGG - chr1_3:67984230-67984249 Msa0136180:intron 30.0%
! ACTATGAGCCAAATAACTTT+TGG + chr1_3:67984241-67984260 None:intergenic 30.0%
! AAAAGTTATTTGGCTCATAG+TGG - chr1_3:67984240-67984259 Msa0136180:intron 30.0%
! AAAGTTATTTGGCTCATAGT+GGG - chr1_3:67984241-67984260 Msa0136180:intron 30.0%
AAACATATCAGGATACTTAC+CGG + chr1_3:67984423-67984442 None:intergenic 30.0%
CAATCTGTACGAATCATAAA+AGG + chr1_3:67984532-67984551 None:intergenic 30.0%
ATAAATAAACAGGTTTGGCA+GGG + chr1_3:67984610-67984629 None:intergenic 30.0%
TATAAATAAACAGGTTTGGC+AGG + chr1_3:67984611-67984630 None:intergenic 30.0%
TCATTCTTCTCATTCTAATC+CGG + chr1_3:67984744-67984763 None:intergenic 30.0%
! GATATACTATAGGTTGAAAG+GGG + chr1_3:67984953-67984972 None:intergenic 30.0%
ATTCTGTCTGTTGGAAAAAA+GGG - chr1_3:67985027-67985046 Msa0136180:intron 30.0%
TTTCAAAAGTTTACCCAGAT+AGG + chr1_3:67985090-67985109 None:intergenic 30.0%
TCTGAATACTGAATGATTTG+TGG - chr1_3:67985133-67985152 Msa0136180:CDS 30.0%
TTGTACAATAGCTATGTACA+AGG - chr1_3:67985181-67985200 Msa0136180:CDS 30.0%
AGACTAATCCCTAAACATTT+GGG + chr1_3:67985221-67985240 None:intergenic 30.0%
AAGACTAATCCCTAAACATT+TGG + chr1_3:67985222-67985241 None:intergenic 30.0%
!! ATTAGTCTTAGAATCAGCTA+AGG - chr1_3:67985233-67985252 Msa0136180:intron 30.0%
TAAAACCTAGAAGGAATCAT+TGG + chr1_3:67985351-67985370 None:intergenic 30.0%
TGCATTGAGTGTTAATGTAT+AGG - chr1_3:67985421-67985440 Msa0136180:intron 30.0%
AAACAAAAAACTGACCGAAA+CGG + chr1_3:67985502-67985521 None:intergenic 30.0%
! TTTTATCTTTACATCGTCAG+TGG - chr1_3:67985566-67985585 Msa0136180:intron 30.0%
!!! ATCATCGTTTTTTCTTACTG+CGG - chr1_3:67985611-67985630 Msa0136180:intron 30.0%
! TATCCAATGCCTTTAAAGAT+TGG - chr1_3:67986212-67986231 Msa0136180:intron 30.0%
TGAATGGTGATATTTCCATT+TGG + chr1_3:67986301-67986320 None:intergenic 30.0%
TCTAAACATTAACTGGTGAA+TGG + chr1_3:67986317-67986336 None:intergenic 30.0%
TACAGACTCTAAACATTAAC+TGG + chr1_3:67986324-67986343 None:intergenic 30.0%
TTCAACTAGAGAAAATGACT+AGG - chr1_3:67986409-67986428 Msa0136180:CDS 30.0%
GTATAGAATCTTCTAATACG+GGG + chr1_3:67986584-67986603 None:intergenic 30.0%
CATTGTAACCAAACTGGTTA+GGG + chr1_3:67982147-67982166 None:intergenic 35.0%
ACATTGTAACCAAACTGGTT+AGG + chr1_3:67982148-67982167 None:intergenic 35.0%
AGAAGACATTGTAACCAAAC+TGG + chr1_3:67982153-67982172 None:intergenic 35.0%
AGACAGGAAAATCTCAAAGA+TGG - chr1_3:67982335-67982354 Msa0136180:three_prime_UTR 35.0%
! ATCCGGGTCTGAATTATTTT+AGG - chr1_3:67982488-67982507 Msa0136180:three_prime_UTR 35.0%
!! TCCGGGTCTGAATTATTTTA+GGG - chr1_3:67982489-67982508 Msa0136180:three_prime_UTR 35.0%
TCCCTAAAATAATTCAGACC+CGG + chr1_3:67982493-67982512 None:intergenic 35.0%
! TGCCTCCATCAATTTTATTG+TGG - chr1_3:67982591-67982610 Msa0136180:CDS 35.0%
!!! AATCTGCTACTGGTTTTAAG+GGG + chr1_3:67982706-67982725 None:intergenic 35.0%
AATTCAGCAAAATCTGCTAC+TGG + chr1_3:67982716-67982735 None:intergenic 35.0%
ATAAGATTATCGTCTCCTTG+TGG - chr1_3:67982742-67982761 Msa0136180:CDS 35.0%
ATAAGATTAACTCCTCCTCT+GGG - chr1_3:67982783-67982802 Msa0136180:CDS 35.0%
TATCAGCATAAGTTGCAGAA+AGG - chr1_3:67983134-67983153 Msa0136180:intron 35.0%
ATCAGCATAAGTTGCAGAAA+GGG - chr1_3:67983135-67983154 Msa0136180:intron 35.0%
AAGAATTGGGAATGGGAATT+GGG - chr1_3:67983302-67983321 Msa0136180:intron 35.0%
TGAGAAAATTAGGAAGGTAG+AGG - chr1_3:67983375-67983394 Msa0136180:intron 35.0%
AAAATGTCAAGATTAGGGCT+AGG + chr1_3:67983476-67983495 None:intergenic 35.0%
! AAGATTTGGGTTAACAATGC+GGG - chr1_3:67983815-67983834 Msa0136180:intron 35.0%
CTTCTGAACAGTTAAATACG+CGG + chr1_3:67984174-67984193 None:intergenic 35.0%
ATGAGTGTTAGTATGTACAG+AGG - chr1_3:67984312-67984331 Msa0136180:CDS 35.0%
GATTCTCGGATATGTTATCT+TGG - chr1_3:67984393-67984412 Msa0136180:CDS 35.0%
GATATGTTATCTTGGTATGC+CGG - chr1_3:67984401-67984420 Msa0136180:CDS 35.0%
!! TTATTCTGGCTCAACTTATG+TGG - chr1_3:67984570-67984589 Msa0136180:intron 35.0%
TACAGAAATCATATCAGCGA+TGG + chr1_3:67984796-67984815 None:intergenic 35.0%
AAAACACAACATTGCGATGT+GGG + chr1_3:67984847-67984866 None:intergenic 35.0%
! TTAGGAAGAGTAGGTTGAAA+GGG + chr1_3:67984921-67984940 None:intergenic 35.0%
! ATTAGGAAGAGTAGGTTGAA+AGG + chr1_3:67984922-67984941 None:intergenic 35.0%
TGATGTCTACACTGTGAATT+TGG - chr1_3:67984978-67984997 Msa0136180:intron 35.0%
GATTCTGTCTGTTGGAAAAA+AGG - chr1_3:67985026-67985045 Msa0136180:intron 35.0%
ATCCAGTAAGTATCCTATCT+GGG - chr1_3:67985074-67985093 Msa0136180:intron 35.0%
GAATCAAGCCCAAATGTTTA+GGG - chr1_3:67985210-67985229 Msa0136180:intron 35.0%
CAACACTGAAATGAACACTT+TGG + chr1_3:67985449-67985468 None:intergenic 35.0%
TTCAGTGTTGCGTTTGAATT+AGG - chr1_3:67985459-67985478 Msa0136180:intron 35.0%
TCAGTGTTGCGTTTGAATTA+GGG - chr1_3:67985460-67985479 Msa0136180:intron 35.0%
TTGCGTTTGAATTAGGGAAT+AGG - chr1_3:67985466-67985485 Msa0136180:intron 35.0%
TGCGTTTGAATTAGGGAATA+GGG - chr1_3:67985467-67985486 Msa0136180:intron 35.0%
TAGGGATATTTCTTCCGTTT+CGG - chr1_3:67985485-67985504 Msa0136180:intron 35.0%
!!! TCATCGTTTTTTCTTACTGC+GGG - chr1_3:67985612-67985631 Msa0136180:intron 35.0%
! TGTTGCAGATATGTGGATTA+AGG - chr1_3:67985697-67985716 Msa0136180:intron 35.0%
TATATTCGGGAAATGCATAC+AGG - chr1_3:67985799-67985818 Msa0136180:intron 35.0%
TGAGTATTACATTGAGCTGT+TGG - chr1_3:67985844-67985863 Msa0136180:intron 35.0%
GAAATTACCTAAAGTCCTGA+AGG + chr1_3:67986159-67986178 None:intergenic 35.0%
CCAAAACCACCAATCTTTAA+AGG + chr1_3:67986224-67986243 None:intergenic 35.0%
!! CCTTTAAAGATTGGTGGTTT+TGG - chr1_3:67986221-67986240 Msa0136180:intron 35.0%
CTGCTTGACCTTTCTATATT+AGG + chr1_3:67986259-67986278 None:intergenic 35.0%
TAGAGTCTGTATCTGTACAT+TGG - chr1_3:67986333-67986352 Msa0136180:intron 35.0%
TCTCTAGTTGAAACAAAGCA+CGG + chr1_3:67986401-67986420 None:intergenic 35.0%
ACTTCAGAAAATAATCCCCA+AGG + chr1_3:67986435-67986454 None:intergenic 35.0%
! GTGATGATGAATGAACTTCA+TGG - chr1_3:67986479-67986498 Msa0136180:CDS 35.0%
GGGTGTAAGAAGATAATAGC+CGG - chr1_3:67982108-67982127 Msa0136180:three_prime_UTR 40.0%
TTAGGGTATGATGTGTTCAC+CGG + chr1_3:67982130-67982149 None:intergenic 40.0%
ACATCATACCCTAACCAGTT+TGG - chr1_3:67982136-67982155 Msa0136180:three_prime_UTR 40.0%
ATGAATGGTGAAGAGAGTGA+TGG + chr1_3:67982185-67982204 None:intergenic 40.0%
GTTGAAGAATCGTGGATGAA+TGG + chr1_3:67982200-67982219 None:intergenic 40.0%
ATGGAAGAAGCTTAGTTCCA+TGG + chr1_3:67982229-67982248 None:intergenic 40.0%
GAGGGAGCAGTTAAAAGAAA+AGG + chr1_3:67982294-67982313 None:intergenic 40.0%
! TTTTCCTGTCTGAACTGCTT+GGG + chr1_3:67982326-67982345 None:intergenic 40.0%
! ATTTTCCTGTCTGAACTGCT+TGG + chr1_3:67982327-67982346 None:intergenic 40.0%
!! CTGTACTACTGATTTCCACA+AGG + chr1_3:67982760-67982779 None:intergenic 40.0%
GATAAGATTAACTCCTCCTC+TGG - chr1_3:67982782-67982801 Msa0136180:CDS 40.0%
ATCCTTGTACCTTAGATGAG+TGG - chr1_3:67982807-67982826 Msa0136180:CDS 40.0%
AGTGATGTATGTCGTATGAG+AGG - chr1_3:67982861-67982880 Msa0136180:CDS 40.0%
GTGATGTATGTCGTATGAGA+GGG - chr1_3:67982862-67982881 Msa0136180:CDS 40.0%
! ACAACTAAAGCACTCACAAG+GGG + chr1_3:67982980-67982999 None:intergenic 40.0%
! GACAACTAAAGCACTCACAA+GGG + chr1_3:67982981-67983000 None:intergenic 40.0%
CTTGTGAGTGCTTTAGTTGT+CGG - chr1_3:67982980-67982999 Msa0136180:intron 40.0%
! TTAGTTGTCGGTGCAGTTTT+TGG - chr1_3:67982992-67983011 Msa0136180:intron 40.0%
GGCAGAGTTATGTGAAGTTT+AGG - chr1_3:67983202-67983221 Msa0136180:intron 40.0%
TAAGATGTTCAACGCGAACA+AGG - chr1_3:67983252-67983271 Msa0136180:intron 40.0%
AAGATGTTCAACGCGAACAA+GGG - chr1_3:67983253-67983272 Msa0136180:intron 40.0%
GAAGAATTGGGAATGGGAAT+TGG - chr1_3:67983301-67983320 Msa0136180:intron 40.0%
AATGCACCGCAGTTTCTATA+TGG - chr1_3:67983533-67983552 Msa0136180:intron 40.0%
ATGAACATGTCCATTTGCGA+GGG + chr1_3:67983566-67983585 None:intergenic 40.0%
TATGAACATGTCCATTTGCG+AGG + chr1_3:67983567-67983586 None:intergenic 40.0%
GATGTCTGAAAGAGTTACAG+AGG - chr1_3:67983610-67983629 Msa0136180:intron 40.0%
ATCCGGCTTAATTGCATGTT+TGG - chr1_3:67983647-67983666 Msa0136180:intron 40.0%
GACCAAACATGCAATTAAGC+CGG + chr1_3:67983652-67983671 None:intergenic 40.0%
! TATAAGGTCTAGTGACGGAA+GGG + chr1_3:67983795-67983814 None:intergenic 40.0%
! TTATAAGGTCTAGTGACGGA+AGG + chr1_3:67983796-67983815 None:intergenic 40.0%
ACTCAATATCATGTCAGGGA+AGG - chr1_3:67983905-67983924 Msa0136180:intron 40.0%
CTCAATATCATGTCAGGGAA+GGG - chr1_3:67983906-67983925 Msa0136180:intron 40.0%
GATGAGTAGTGTATCTAGCA+TGG - chr1_3:67984263-67984282 Msa0136180:intron 40.0%
AGTGTTAGTATGTACAGAGG+AGG - chr1_3:67984315-67984334 Msa0136180:CDS 40.0%
TTAGTATGTACAGAGGAGGT+AGG - chr1_3:67984319-67984338 Msa0136180:CDS 40.0%
TAGTATGTACAGAGGAGGTA+GGG - chr1_3:67984320-67984339 Msa0136180:CDS 40.0%
AAGAGCAAAGAAGGCAAATC+CGG + chr1_3:67984372-67984391 None:intergenic 40.0%
CTTCTTTGCTCTTGGATTCT+CGG - chr1_3:67984379-67984398 Msa0136180:CDS 40.0%
AGCCAGAATAAGTTCTGTCA+CGG + chr1_3:67984561-67984580 None:intergenic 40.0%
! TATTAATTCGTCTGGGACTC+AGG - chr1_3:67984631-67984650 Msa0136180:intron 40.0%
GTCTTTCTTTCCTCTGTTTC+CGG - chr1_3:67984722-67984741 Msa0136180:intron 40.0%
TCATTCTAATCCGGAAACAG+AGG + chr1_3:67984735-67984754 None:intergenic 40.0%
AATGAGAAGAATGAGACCGT+GGG - chr1_3:67984750-67984769 Msa0136180:intron 40.0%
CAAAACACAACATTGCGATG+TGG + chr1_3:67984848-67984867 None:intergenic 40.0%
! CACATCGCAATGTTGTGTTT+TGG - chr1_3:67984846-67984865 Msa0136180:intron 40.0%
! TAGGAAGAGTAGGTTGAAAG+GGG + chr1_3:67984920-67984939 None:intergenic 40.0%
GGATACTTACTGGATGAATG+TGG + chr1_3:67985069-67985088 None:intergenic 40.0%
CATCCAGTAAGTATCCTATC+TGG - chr1_3:67985073-67985092 Msa0136180:intron 40.0%
TACCCAGATAGGATACTTAC+TGG + chr1_3:67985079-67985098 None:intergenic 40.0%
ATAGCTATGTACAAGGCTGA+AGG - chr1_3:67985188-67985207 Msa0136180:CDS 40.0%
GGAATCAAGCCCAAATGTTT+AGG - chr1_3:67985209-67985228 Msa0136180:intron 40.0%
ACCATCCAATGATTCCTTCT+AGG - chr1_3:67985343-67985362 Msa0136180:intron 40.0%
ACCTAGAAGGAATCATTGGA+TGG + chr1_3:67985347-67985366 None:intergenic 40.0%
TACATCGTCAGTGGAATGTA+AGG - chr1_3:67985575-67985594 Msa0136180:intron 40.0%
GAAGACAGCAAACATGTACA+CGG + chr1_3:67985731-67985750 None:intergenic 40.0%
TACATTGAGCTGTTGGCAAA+AGG - chr1_3:67985851-67985870 Msa0136180:intron 40.0%
AAAAGGAACAGGGAAGTCAA+AGG - chr1_3:67985868-67985887 Msa0136180:intron 40.0%
AAATTGCTAAAGACGTCCAG+AGG - chr1_3:67985894-67985913 Msa0136180:intron 40.0%
GTTGGAAATATCTAGTCCTC+TGG + chr1_3:67985913-67985932 None:intergenic 40.0%
GACTAGATATTTCCAACCAC+AGG - chr1_3:67985916-67985935 Msa0136180:intron 40.0%
! CCACCAATCTTTAAAGGCAT+TGG + chr1_3:67986218-67986237 None:intergenic 40.0%
! CCAATGCCTTTAAAGATTGG+TGG - chr1_3:67986215-67986234 Msa0136180:intron 40.0%
AGTCGACGCCTAATATAGAA+AGG - chr1_3:67986248-67986267 Msa0136180:intron 40.0%
GCAGAGATCTTCACATATCA+AGG - chr1_3:67986275-67986294 Msa0136180:intron 40.0%
CTTCACATATCAAGGCCAAA+TGG - chr1_3:67986283-67986302 Msa0136180:intron 40.0%
!! TGTATCTGTACATTGGCTCT+GGG - chr1_3:67986340-67986359 Msa0136180:intron 40.0%
CTCTAGTTGAAACAAAGCAC+GGG + chr1_3:67986400-67986419 None:intergenic 40.0%
TAGAGAAAATGACTAGGCCT+TGG - chr1_3:67986415-67986434 Msa0136180:CDS 40.0%
AGAGAAAATGACTAGGCCTT+GGG - chr1_3:67986416-67986435 Msa0136180:CDS 40.0%
ATCTTCTAATACGGGGAACA+AGG + chr1_3:67986577-67986596 None:intergenic 40.0%
GATTCTTCAACTACTCGCCA+TGG - chr1_3:67982209-67982228 Msa0136180:three_prime_UTR 45.0%
!! GAAAAGGACTTGAAGCATCG+CGG + chr1_3:67982278-67982297 None:intergenic 45.0%
TTTCCTGTCTGAACTGCTTG+GGG + chr1_3:67982325-67982344 None:intergenic 45.0%
CTTGTACCTTAGATGAGTGG+CGG - chr1_3:67982810-67982829 Msa0136180:CDS 45.0%
TTGTACCTTAGATGAGTGGC+GGG - chr1_3:67982811-67982830 Msa0136180:CDS 45.0%
! CGACAACTAAAGCACTCACA+AGG + chr1_3:67982982-67983001 None:intergenic 45.0%
!!! GCAGTTTTTGGAACTTCGCT+TGG - chr1_3:67983004-67983023 Msa0136180:intron 45.0%
AGATGTTCAACGCGAACAAG+GGG - chr1_3:67983254-67983273 Msa0136180:intron 45.0%
! TGGTCTTAATCCCTCGCAAA+TGG - chr1_3:67983553-67983572 Msa0136180:intron 45.0%
CTTTCAGACATCTGATGCAC+AGG + chr1_3:67983602-67983621 None:intergenic 45.0%
AGTATGTACAGAGGAGGTAG+GGG - chr1_3:67984321-67984340 Msa0136180:CDS 45.0%
! AAATCCGGTGGAGCATTTCT+AGG + chr1_3:67984357-67984376 None:intergenic 45.0%
GGATTTGCCTTCTTTGCTCT+TGG - chr1_3:67984371-67984390 Msa0136180:CDS 45.0%
CGAGAATCCAAGAGCAAAGA+AGG + chr1_3:67984381-67984400 None:intergenic 45.0%
AGAATAAGTTCTGTCACGGC+TGG + chr1_3:67984557-67984576 None:intergenic 45.0%
AGCCGTGACAGAACTTATTC+TGG - chr1_3:67984556-67984575 Msa0136180:intron 45.0%
! TCTGGCTCAACTTATGTGGT+TGG - chr1_3:67984574-67984593 Msa0136180:intron 45.0%
GAATGAGAAGAATGAGACCG+TGG - chr1_3:67984749-67984768 Msa0136180:intron 45.0%
AGCATCAGTTTCTGATCCCA+CGG + chr1_3:67984769-67984788 None:intergenic 45.0%
! AGGAAGAGTAGGTTGAAAGG+GGG + chr1_3:67984919-67984938 None:intergenic 45.0%
CTACACTGTGAATTTGGCCA+TGG - chr1_3:67984984-67985003 Msa0136180:intron 45.0%
CAGACAGAATCATTGCTGCT+TGG + chr1_3:67985017-67985036 None:intergenic 45.0%
GCAGCAATGATTCTGTCTGT+TGG - chr1_3:67985018-67985037 Msa0136180:intron 45.0%
ATGAATGTGGCAGTACAGCA+CGG + chr1_3:67985056-67985075 None:intergenic 45.0%
CACTTGATCTGTGGACTTTC+GGG + chr1_3:67985673-67985692 None:intergenic 45.0%
CCACTTGATCTGTGGACTTT+CGG + chr1_3:67985674-67985693 None:intergenic 45.0%
CAACAGAACCACTTGATCTG+TGG + chr1_3:67985682-67985701 None:intergenic 45.0%
! GTGGTTCTGTTGCAGATATG+TGG - chr1_3:67985690-67985709 Msa0136180:intron 45.0%
ATGCATACAGGCAAAAGAGC+TGG - chr1_3:67985811-67985830 Msa0136180:intron 45.0%
AGCTGTTGGCAAAAGGAACA+GGG - chr1_3:67985858-67985877 Msa0136180:intron 45.0%
ATTCTATGGCATCCTGTGGT+TGG + chr1_3:67985931-67985950 None:intergenic 45.0%
CCACAGGATGCCATAGAATA+CGG - chr1_3:67985932-67985951 Msa0136180:intron 45.0%
!! CTGTATCTGTACATTGGCTC+TGG - chr1_3:67986339-67986358 Msa0136180:intron 45.0%
!! GTATCTGTACATTGGCTCTG+GGG - chr1_3:67986341-67986360 Msa0136180:intron 45.0%
!! TATCTGTACATTGGCTCTGG+GGG - chr1_3:67986342-67986361 Msa0136180:intron 45.0%
GAGAAAATGACTAGGCCTTG+GGG - chr1_3:67986417-67986436 Msa0136180:CDS 45.0%
GGCGAGTAGTTGAAGAATCG+TGG + chr1_3:67982208-67982227 None:intergenic 50.0%
TAAGGTACAAGGATGCCCAG+AGG + chr1_3:67982801-67982820 None:intergenic 50.0%
! CGCCACTCATCTAAGGTACA+AGG + chr1_3:67982812-67982831 None:intergenic 50.0%
GGTGGAACTTGTCCTGTGTT+GGG - chr1_3:67982832-67982851 Msa0136180:CDS 50.0%
GTGGAACTTGTCCTGTGTTG+GGG - chr1_3:67982833-67982852 Msa0136180:CDS 50.0%
ATCACTATCGACCCCAACAC+AGG + chr1_3:67982847-67982866 None:intergenic 50.0%
CGTATGAGAGGGATTGTGCT+AGG - chr1_3:67982873-67982892 Msa0136180:CDS 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_3:67982914-67982933 Msa0136180:intron 50.0%
TGTGTGTGTGTGTGTGTGGT+GGG - chr1_3:67982930-67982949 Msa0136180:intron 50.0%
! ACTAAAGCACTCACAAGGGG+AGG + chr1_3:67982977-67982996 None:intergenic 50.0%
TGGGTTAACAATGCGGGTGA+TGG - chr1_3:67983821-67983840 Msa0136180:intron 50.0%
AAGGCCTAGAAATGCTCCAC+CGG - chr1_3:67984350-67984369 Msa0136180:CDS 50.0%
AGCAAAGAAGGCAAATCCGG+TGG + chr1_3:67984369-67984388 None:intergenic 50.0%
GTGAATTTGGCCATGGCGTT+TGG - chr1_3:67984991-67985010 Msa0136180:intron 50.0%
CCGAAAGTCCACAGATCAAG+TGG - chr1_3:67985671-67985690 Msa0136180:intron 50.0%
CATACAGGCAAAAGAGCTGG+AGG - chr1_3:67985814-67985833 Msa0136180:intron 50.0%
GAGCTGTTGGCAAAAGGAAC+AGG - chr1_3:67985857-67985876 Msa0136180:intron 50.0%
CCGTATTCTATGGCATCCTG+TGG + chr1_3:67985935-67985954 None:intergenic 50.0%
GTCAGCGAGTCCGTATTCTA+TGG + chr1_3:67985945-67985964 None:intergenic 50.0%
! GGGAGAGTGCATATGAGAAG+CGG - chr1_3:67985987-67986006 Msa0136180:intron 50.0%
! GGAGAGTGCATATGAGAAGC+GGG - chr1_3:67985988-67986007 Msa0136180:intron 50.0%
!! TACGTGCTCAAAGAGCACTG+CGG - chr1_3:67986106-67986125 Msa0136180:intron 50.0%
GTCTGAACTGCTTGGGGATG+CGG + chr1_3:67982319-67982338 None:intergenic 55.0%
CATCCCCAAGCAGTTCAGAC+AGG - chr1_3:67982319-67982338 Msa0136180:three_prime_UTR 55.0%
! TACCTTAGATGAGTGGCGGG+TGG - chr1_3:67982814-67982833 Msa0136180:CDS 55.0%
TTCCACCCGCCACTCATCTA+AGG + chr1_3:67982819-67982838 None:intergenic 55.0%
GGGTGGAACTTGTCCTGTGT+TGG - chr1_3:67982831-67982850 Msa0136180:CDS 55.0%
GTGTGTGTGTGTGTGTGTGG+TGG - chr1_3:67982929-67982948 Msa0136180:intron 55.0%
GTGTGTGTGTGTGTGTGGTG+GGG - chr1_3:67982931-67982950 Msa0136180:intron 55.0%
TGTGTGTGTGTGTGTGGTGG+GGG - chr1_3:67982932-67982951 Msa0136180:intron 55.0%
TACAGAGGAGGTAGGGGAAC+AGG - chr1_3:67984327-67984346 Msa0136180:CDS 55.0%
AGCGGCTCCTTCAGGACTTT+AGG - chr1_3:67986149-67986168 Msa0136180:intron 55.0%
CGGGGAACAAGGTGTGCATT+AGG + chr1_3:67986566-67986585 None:intergenic 55.0%
GTGGCAGTGGCGTGAGGAAA+TGG + chr1_3:67982248-67982267 None:intergenic 60.0%
!! GAAGCATCGCGGTTTGCGTG+TGG + chr1_3:67982267-67982286 None:intergenic 60.0%
GGTACAAGGATGCCCAGAGG+AGG + chr1_3:67982798-67982817 None:intergenic 60.0%
TGCTAGGTCTTGCAGCGTCG+TGG - chr1_3:67982889-67982908 Msa0136180:CDS 60.0%
GCTAGGTCTTGCAGCGTCGT+GGG - chr1_3:67982890-67982909 Msa0136180:CDS 60.0%
CTAGGTCTTGCAGCGTCGTG+GGG - chr1_3:67982891-67982910 Msa0136180:CDS 60.0%
! GTGTGTGTGTGTGTGGTGGG+GGG - chr1_3:67982933-67982952 Msa0136180:intron 60.0%
GAGGAGGTAGGGGAACAGGA+AGG - chr1_3:67984331-67984350 Msa0136180:CDS 60.0%
! TGCTGCTTGGCCAAACGCCA+TGG + chr1_3:67985004-67985023 None:intergenic 60.0%
!! GCTCAAAGAGCACTGCGGAG+AGG - chr1_3:67986111-67986130 Msa0136180:intron 60.0%
!! CAAAGAGCACTGCGGAGAGG+TGG - chr1_3:67986114-67986133 Msa0136180:intron 60.0%
!! AGGTGGTGGGAACCCTCAAG+CGG - chr1_3:67986131-67986150 Msa0136180:intron 60.0%
AACCCTCAAGCGGCTCCTTC+AGG - chr1_3:67986141-67986160 Msa0136180:intron 60.0%
GTCCTGAAGGAGCCGCTTGA+GGG + chr1_3:67986146-67986165 None:intergenic 60.0%
AGTCCTGAAGGAGCCGCTTG+AGG + chr1_3:67986147-67986166 None:intergenic 60.0%
TTGCGTGTGGCAGTGGCGTG+AGG + chr1_3:67982254-67982273 None:intergenic 65.0%
TCGCGGTTTGCGTGTGGCAG+TGG + chr1_3:67982261-67982280 None:intergenic 65.0%
CTGCTTGGGGATGCGGTCGA+GGG + chr1_3:67982312-67982331 None:intergenic 65.0%
ACTGCTTGGGGATGCGGTCG+AGG + chr1_3:67982313-67982332 None:intergenic 65.0%
! GTGTGTGGTGGGGGGTTGTC+TGG - chr1_3:67982941-67982960 Msa0136180:intron 65.0%
!! AGAGCACTGCGGAGAGGTGG+TGG - chr1_3:67986117-67986136 Msa0136180:intron 65.0%
! GAGCACTGCGGAGAGGTGGT+GGG - chr1_3:67986118-67986137 Msa0136180:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67982097 67986635 67982097 ID=Msa0136180;Name=Msa0136180
chr1_3 mRNA 67982097 67986635 67982097 ID=Msa0136180-mRNA-1;Parent=Msa0136180;Name=Msa0136180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|1|1|9|465|373
chr1_3 exon 67982097 67982639 67982097 ID=Msa0136180-mRNA-1:exon:23422;Parent=Msa0136180-mRNA-1
chr1_3 exon 67982723 67982911 67982723 ID=Msa0136180-mRNA-1:exon:23421;Parent=Msa0136180-mRNA-1
chr1_3 exon 67983014 67983075 67983014 ID=Msa0136180-mRNA-1:exon:23420;Parent=Msa0136180-mRNA-1
chr1_3 exon 67983654 67983765 67983654 ID=Msa0136180-mRNA-1:exon:23419;Parent=Msa0136180-mRNA-1
chr1_3 exon 67983920 67983982 67983920 ID=Msa0136180-mRNA-1:exon:23418;Parent=Msa0136180-mRNA-1
chr1_3 exon 67984080 67984184 67984080 ID=Msa0136180-mRNA-1:exon:23417;Parent=Msa0136180-mRNA-1
chr1_3 exon 67984310 67984510 67984310 ID=Msa0136180-mRNA-1:exon:23416;Parent=Msa0136180-mRNA-1
chr1_3 exon 67985101 67985216 67985101 ID=Msa0136180-mRNA-1:exon:23415;Parent=Msa0136180-mRNA-1
chr1_3 exon 67986373 67986635 67986373 ID=Msa0136180-mRNA-1:exon:23414;Parent=Msa0136180-mRNA-1
chr1_3 five_prime_UTR 67986569 67986635 67986569 ID=Msa0136180-mRNA-1:five_prime_utr;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67986373 67986568 67986373 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67985101 67985216 67985101 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67984310 67984510 67984310 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67984080 67984184 67984080 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67983920 67983982 67983920 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67983654 67983765 67983654 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67983014 67983075 67983014 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67982723 67982911 67982723 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 CDS 67982562 67982639 67982562 ID=Msa0136180-mRNA-1:cds;Parent=Msa0136180-mRNA-1
chr1_3 three_prime_UTR 67982097 67982561 67982097 ID=Msa0136180-mRNA-1:three_prime_utr;Parent=Msa0136180-mRNA-1
Gene Sequence

>Msa0136180

ATGTCTTCTTCGCTCTCACCATCACTCTCTTCACCATTCATCCACGATTCTTCAACTACTCGCCATGGAACTAAGCTTCTTCCATTTCCTCACGCCACTGCCACACGCAAACCGCGATGCTTCAAGTCCTTTTCTTTTAACTGCTCCCTCGACCGCATCCCCAAGCAGTTCAGACAGGAAAATCTCAAAGATGGATTGATGGACAATTACAAGAATGCACCGCAGTTTCTATATGGTCTTAATCCCTCGCAAATGGACATGTTCATAAATGCAGACAATCCTGTGCATCAGATGTCTGAAAGAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGCTCATAGTGGGATGAGTAGTGTATCTAGCATGGATACTAATGCATCTTCAAGACACAGCATGAGTGTTAGTATGTACAGAGGAGGTAGGGGAACAGGAAGGCCTAGAAATGCTCCACCGGATTTGCCTTCTTTGCTCTTGGATTCTCGGATATGTTATCTTGGTATGCCGATTGTACCAGCCGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTGTTTATTTATATATTAATTCGTCTGGGACTCAGAATGAGAAGAATGAGACCGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGATTTCTTATATCAAATCTGATGTCTACACTGTGAATTTGGCCATGGCGTTTGGCCAAGCAGCAATGATTCTGTCTGTTGGAAAAAAGGGTTACCGTGCTGTACTGCCACATTCATCCACAAAAGTATTTCTCCCGAAAGTCCACAGATCAAGTGGTTCTGTTGCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATTCTGAGTATTACATTGAGCTGTTGGCAAAAGGAACAGGGAAGTCAAAGGAAGAAATTGCTAAAGACGTCCAGAGGACTAGATATTTCCAACCACAGGATGCCATAGAATACGGACTCGCTGACAAAATAATGTATTCAATGGATGGGGAGAGTGCATATGAGAAGCGGAATTATGATGAAATACGTGCTCAAAGAGCACTGCGGAGAGGTGGTGGGAACCCTCAAGCGGCTCCTTCAGGACTTTAG

Protein sequence

>Msa0136180

MSSSLSPSLSSPFIHDSSTTRHGTKLLPFPHATATRKPRCFKSFSFNCSLDRIPKQFRQENLKDGLMDNYKNAPQFLYGLNPSQMDMFINADNPVHQMSERVTEESISSAKSYLAHSGMSSVSSMDTNASSRHSMSVSMYRGGRGTGRPRNAPPDLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYLYINSSGTQNEKNETVGSETDAYSIADMISYIKSDVYTVNLAMAFGQAAMILSVGKKGYRAVLPHSSTKVFLPKVHRSSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEEIAKDVQRTRYFQPQDAIEYGLADKIMYSMDGESAYEKRNYDEIRAQRALRRGGGNPQAAPSGL*