AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525180 MtrunA17_Chr3g0104361 95.274 402 15 1 1 398 1 402 0.0 746
Msa0525180 MtrunA17_Chr8g0348761 74.128 344 82 2 62 398 131 474 0.0 534
Msa0525180 MtrunA17_Chr7g0247871 73.623 345 83 3 56 398 82 420 0.0 528
Msa0525180 MtrunA17_Chr4g0064801 37.010 408 212 8 19 397 18 409 4.97e-83 263
Msa0525180 MtrunA17_Chr7g0241591 37.615 327 202 1 74 398 66 392 9.75e-73 236
Msa0525180 MtrunA17_Chr5g0429461 41.869 289 162 1 116 398 189 477 3.16e-65 218
Msa0525180 MtrunA17_Chr4g0013731 37.658 316 180 6 99 398 4 318 6.39e-55 187
Msa0525180 MtrunA17_Chr2g0290941 81.818 55 10 0 344 398 1 55 2.46e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525180 AT2G29650.1 72.705 403 100 4 1 398 1 398 0.0 561
Msa0525180 AT2G29650.2 72.705 403 100 4 1 398 1 398 0.0 559
Msa0525180 AT4G00370.1 74.780 341 82 2 62 398 87 427 0.0 527
Msa0525180 AT2G29650.3 85.000 280 42 0 119 398 7 286 3.25e-174 492
Msa0525180 AT2G29650.4 85.507 276 40 0 123 398 1 276 3.37e-172 486
Msa0525180 AT2G38060.1 37.692 390 222 7 29 398 10 398 1.15e-77 249
Msa0525180 AT2G38060.2 37.692 390 222 7 29 398 10 398 5.84e-77 249
Msa0525180 AT5G20380.1 42.157 306 173 3 94 397 90 393 6.39e-77 247
Msa0525180 AT5G20380.2 42.157 306 173 3 94 397 142 445 1.99e-76 248
Msa0525180 AT3G46980.3 40.336 357 201 4 54 398 58 414 6.57e-76 245
Msa0525180 AT3G46980.1 40.336 357 201 4 54 398 58 414 7.21e-76 245
Msa0525180 AT3G46980.4 40.336 357 201 4 54 398 106 462 1.72e-75 245
Msa0525180 AT3G46980.8 41.880 234 129 2 172 398 1 234 8.71e-53 180
Msa0525180 AT3G46980.2 41.880 234 129 2 172 398 1 234 8.71e-53 180
Msa0525180 AT3G46980.5 41.880 234 129 2 172 398 1 234 8.84e-53 180
Msa0525180 AT3G46980.7 41.880 234 129 2 172 398 1 234 8.84e-53 180
Msa0525180 AT5G44370.1 34.868 304 190 5 100 398 7 307 1.80e-51 178
Msa0525180 AT3G46980.6 38.462 169 97 2 237 398 2 170 2.40e-30 118

Find 114 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAATTTCTGCAAATTT+TGG 0.155639 3_4:+78713507 Msa0525180:CDS
TAGTACAGTCTTCTTTCTTT+TGG 0.193133 3_4:+78711837 Msa0525180:CDS
TGAATAATATTCTGTCAAAA+TGG 0.210887 3_4:+78712291 Msa0525180:CDS
GGCAAAAGTGGGACACTATC+AGG 0.253332 3_4:-78712760 None:intergenic
TGCAGATTGCTGGTGGAATA+TGG 0.288175 3_4:+78711969 Msa0525180:intron
CCTTTCCTGATTCACCAGTA+TGG 0.295712 3_4:+78712398 Msa0525180:CDS
AAGTTCAATCTTACAGAATC+TGG 0.297006 3_4:+78713456 Msa0525180:CDS
TTGGTTCTCTAGGAACAATT+TGG 0.318484 3_4:+78712444 Msa0525180:CDS
GTTTGGCAGCTACGGGAGTT+AGG 0.354746 3_4:-78712057 None:intergenic
ATAACAATAACCCATCTCTT+AGG 0.357009 3_4:-78710323 None:intergenic
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3_4:+78712096 Msa0525180:CDS
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3_4:-78712074 None:intergenic
GCCATCCATACTGGTGAATC+AGG 0.393766 3_4:-78712403 None:intergenic
TATTTCCTTCACAGGTTCCT+TGG 0.393829 3_4:-78712699 None:intergenic
AGATACTTGTTGCAGATTGC+TGG 0.402333 3_4:+78711959 Msa0525180:intron
TGAATGGTTGAGGTTTGTTC+TGG 0.413113 3_4:-78710099 None:intergenic
CAATGTCAGCAGAGTACAAC+TGG 0.414950 3_4:+78711795 Msa0525180:CDS
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3_4:+78712103 Msa0525180:CDS
ACCTGTGAAGGAAATACCTT+GGG 0.422628 3_4:+78712706 Msa0525180:CDS
TAAGAAAGTAGTAAGTGGTT+TGG 0.423850 3_4:+78710244 Msa0525180:CDS
CCCCAAGGTATTTCCTTCAC+AGG 0.432539 3_4:-78712707 None:intergenic
ACACTGATGGCCATCCATAC+TGG 0.434066 3_4:-78712412 None:intergenic
GAACTTTCATTCTTCTTACA+TGG 0.440920 3_4:+78712792 Msa0525180:CDS
GGTGATGATGTTGAGGTAGA+AGG 0.444357 3_4:+78710269 Msa0525180:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3_4:+78712292 Msa0525180:CDS
CAATCCAAGTTTGGCAGCTA+CGG 0.451750 3_4:-78712065 None:intergenic
ACTCCCGTAGCTGCCAAACT+TGG 0.453418 3_4:+78712061 Msa0525180:CDS
CTTACTTGATTATAGTATGT+TGG 0.454637 3_4:-78712818 None:intergenic
ACGGAGAAGGTGAATGGTTG+AGG 0.454848 3_4:-78710109 None:intergenic
TTTGTCGAAACCACCAGTTT+GGG 0.469448 3_4:+78712736 Msa0525180:CDS
ACACCTTCCCTCTTCCTCTC+CGG 0.472346 3_4:-78710154 None:intergenic
CTGTGTCACCGGAGAGGAAG+AGG 0.479989 3_4:+78710146 Msa0525180:CDS
TTCCCCAGTTGTGGCAAAAG+TGG 0.480489 3_4:-78712772 None:intergenic
TAGCATTTGGCGTCATTTGG+TGG 0.480914 3_4:+78712020 Msa0525180:CDS
GCAGATTGCTGGTGGAATAT+GGG 0.485868 3_4:+78711970 Msa0525180:intron
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3_4:+78712265 Msa0525180:intron
CCTTGGATCGGTCACTGGAT+TGG 0.489429 3_4:+78712367 Msa0525180:CDS
TCATACTTACTTGATGCCTC+TGG 0.490752 3_4:-78710206 None:intergenic
CCCGAGGTGTATCTGTTACA+AGG 0.491771 3_4:+78713556 Msa0525180:CDS
CATTGCACCTGCTGTGTCAC+CGG 0.492613 3_4:+78710135 Msa0525180:CDS
TTCCTCTCCGGTGACACAGC+AGG 0.496137 3_4:-78710142 None:intergenic
GACACTATCAGGGCCCAAAC+TGG 0.504125 3_4:-78712749 None:intergenic
GAGAAGTAGATCATTAGCTC+TGG 0.509100 3_4:+78712328 Msa0525180:CDS
GTGAATCAGGAAAGGTGAAA+AGG 0.509896 3_4:-78712390 None:intergenic
AATCCAAGTTTGGCAGCTAC+GGG 0.510619 3_4:-78712064 None:intergenic
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3_4:-78710059 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3_4:-78710128 None:intergenic
ATGTACCTTGGATCGGTCAC+TGG 0.517053 3_4:+78712362 Msa0525180:CDS
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3_4:+78712097 Msa0525180:CDS
GTTCATAAGAAAGTAGTAAG+TGG 0.520316 3_4:+78710239 Msa0525180:CDS
AAGGAACAAGCTCTTCTCCT+TGG 0.521751 3_4:+78710288 Msa0525180:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3_4:-78712284 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3_4:-78712088 None:intergenic
TCCTGATTCACCAGTATGGA+TGG 0.522690 3_4:+78712402 Msa0525180:CDS
CACCAATTCCCATGAATGCA+CGG 0.527914 3_4:-78712105 None:intergenic
GGAGAGGAAGAGGGAAGGTG+TGG 0.529959 3_4:+78710156 Msa0525180:CDS
AAGAAGTTGATTGCTACAAA+CGG 0.531136 3_4:+78712671 Msa0525180:CDS
GTATACAGTGGCATGTACCT+TGG 0.538242 3_4:+78712350 Msa0525180:CDS
GAGAGGAAGAGGGAAGGTGT+GGG 0.541836 3_4:+78710157 Msa0525180:CDS
AACCTGTGAAGGAAATACCT+TGG 0.548334 3_4:+78712705 Msa0525180:CDS
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3_4:+78710208 Msa0525180:CDS
GAACAAGCTCTTCTCCTTGG+TGG 0.552276 3_4:+78710291 Msa0525180:CDS
AACAAGCTCTTCTCCTTGGT+GGG 0.552346 3_4:+78710292 Msa0525180:CDS
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3_4:-78712781 None:intergenic
CAGTTGTACTCTGCTGACAT+TGG 0.556876 3_4:-78711794 None:intergenic
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3_4:-78710134 None:intergenic
GGGAGTTAGGATTGTGGCAA+CGG 0.560055 3_4:-78712044 None:intergenic
ATCTGTTACAAGGGTTCGCA+AGG 0.562047 3_4:+78713566 Msa0525180:CDS
AAAGTAGTAAGTGGTTTGGA+TGG 0.562988 3_4:+78710248 Msa0525180:CDS
TTGGGGATACCTCCTCACTC+AGG 0.564095 3_4:+78711856 Msa0525180:CDS
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3_4:+78710183 Msa0525180:CDS
AGTGGTGAAGAAGAAGAAGA+AGG 0.565187 3_4:-78710068 None:intergenic
GGAATATGGGCTGACACAGT+GGG 0.567890 3_4:+78711983 Msa0525180:CDS
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3_4:-78710122 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.569335 3_4:+78713557 Msa0525180:CDS
GATCTACTTCTCTCTGCCAC+AGG 0.573723 3_4:-78712317 None:intergenic
TGTACTAAACCTACAGTGGT+GGG 0.573906 3_4:-78711821 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3_4:-78712104 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3_4:+78710190 Msa0525180:CDS
TTCGACAAAATTAATCCCCA+AGG 0.576040 3_4:-78712722 None:intergenic
TGGAATATGGGCTGACACAG+TGG 0.577010 3_4:+78711982 Msa0525180:CDS
TCCCCAGTTGTGGCAAAAGT+GGG 0.577515 3_4:-78712771 None:intergenic
TTTGGATGGTGATGATGTTG+AGG 0.582526 3_4:+78710262 Msa0525180:CDS
CTGTACTAAACCTACAGTGG+TGG 0.586896 3_4:-78711822 None:intergenic
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3_4:+78710182 Msa0525180:CDS
GCAAAAGTGGGACACTATCA+GGG 0.591083 3_4:-78712759 None:intergenic
AATTGTTCCTAGAGAACCAA+AGG 0.595025 3_4:-78712441 None:intergenic
TGTGTCACCGGAGAGGAAGA+GGG 0.604856 3_4:+78710147 Msa0525180:CDS
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3_4:+78711962 Msa0525180:intron
CCAATCCAGTGACCGATCCA+AGG 0.609770 3_4:-78712367 None:intergenic
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3_4:-78710115 None:intergenic
CAGTGGCATGTACCTTGGAT+CGG 0.616265 3_4:+78712355 Msa0525180:CDS
CCCTTGTAACAGATACACCT+CGG 0.616464 3_4:-78713557 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3_4:+78711812 Msa0525180:CDS
CCTTGTAACAGATACACCTC+GGG 0.624936 3_4:-78713556 None:intergenic
TCTGTCAAAATGGGTTCCTG+TGG 0.627501 3_4:+78712301 Msa0525180:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3_4:-78712425 None:intergenic
CCATACTGGTGAATCAGGAA+AGG 0.630298 3_4:-78712398 None:intergenic
GAAATTGCCATAGTAAGCCA+TGG 0.638270 3_4:-78713495 None:intergenic
AGCATTTCAGGATCATCAAG+TGG 0.639095 3_4:-78712638 None:intergenic
TTTGTTCTGGTACGTGACAG+TGG 0.645348 3_4:-78710086 None:intergenic
TGCATTCATGGGAATTGGTG+AGG 0.647999 3_4:+78712108 Msa0525180:CDS
GTACTAAACCTACAGTGGTG+GGG 0.651673 3_4:-78711820 None:intergenic
ACTATCAGGGCCCAAACTGG+TGG 0.653748 3_4:-78712746 None:intergenic
CACCTGCTGTGTCACCGGAG+AGG 0.665468 3_4:+78710140 Msa0525180:CDS
AGACTGTACTAAACCTACAG+TGG 0.666932 3_4:-78711825 None:intergenic
AGCTACGGGAGTTAGGATTG+TGG 0.669995 3_4:-78712050 None:intergenic
TCACCGGAGAGGAAGAGGGA+AGG 0.672873 3_4:+78710151 Msa0525180:CDS
TGAAACCACATACCTGAGTG+AGG 0.683840 3_4:-78711868 None:intergenic
GCAGACACTCTTGTAACCCG+AGG 0.688978 3_4:+78713540 Msa0525180:CDS
ATATGGGCTGACACAGTGGG+AGG 0.689041 3_4:+78711986 Msa0525180:CDS
TCATTAGCTCTGGTATACAG+TGG 0.696345 3_4:+78712338 Msa0525180:CDS
AACCACATACCTGAGTGAGG+AGG 0.707329 3_4:-78711865 None:intergenic
CCTGTGAAGGAAATACCTTG+GGG 0.772599 3_4:+78712707 Msa0525180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACGAAAAAGT+TGG + chr3_4:78710422-78710441 Msa0525180:intron 15.0%
!!! TTAGATTAGTTTTTAACTTA+TGG + chr3_4:78710926-78710945 Msa0525180:intron 15.0%
!! ATTTATGACTATATAATCAT+AGG + chr3_4:78711617-78711636 Msa0525180:intron 15.0%
!! TTTATGACTATATAATCATA+GGG + chr3_4:78711618-78711637 Msa0525180:intron 15.0%
!! GAATAAATCAAGTATAAATA+TGG - chr3_4:78713358-78713377 None:intergenic 15.0%
!!! TATTTTCAAATTTATATCAC+AGG + chr3_4:78713428-78713447 Msa0525180:intron 15.0%
!!! ATAGATACACTTACTAATTT+TGG + chr3_4:78710515-78710534 Msa0525180:intron 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG + chr3_4:78710889-78710908 Msa0525180:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG + chr3_4:78710890-78710909 Msa0525180:intron 20.0%
!! GTTAAAAACTAATCTAAACT+AGG - chr3_4:78710923-78710942 None:intergenic 20.0%
!! GTTAATAAGCATTTATTAAG+AGG + chr3_4:78711379-78711398 Msa0525180:intron 20.0%
!!! AACAATTTGAAGTAATATGA+AGG - chr3_4:78711480-78711499 None:intergenic 20.0%
!!! ATGGTAGTTTTTTTTTCTAT+GGG + chr3_4:78712222-78712241 Msa0525180:intron 20.0%
!!! TTTTGACAGAATATTATTCA+TGG - chr3_4:78712291-78712310 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG + chr3_4:78712291-78712310 Msa0525180:CDS 20.0%
!! GAATAATATTCTGTCAAAAT+GGG + chr3_4:78712292-78712311 Msa0525180:CDS 20.0%
!!! CAAGTAAGTTTTTCTTTTTT+TGG + chr3_4:78712833-78712852 Msa0525180:intron 20.0%
!! AAAGAAATAGTTTCAATTTG+TGG - chr3_4:78712988-78713007 None:intergenic 20.0%
!! GTTTATTAATAGAAATACCT+TGG - chr3_4:78713043-78713062 None:intergenic 20.0%
!! ATGATAATTTCTCAATTCAA+TGG - chr3_4:78713217-78713236 None:intergenic 20.0%
!! AAGAAAAACTAAAAAAGAGA+AGG - chr3_4:78713613-78713632 None:intergenic 20.0%
!! TGCTTTTCTTCTATGTAATA+TGG + chr3_4:78710358-78710377 Msa0525180:CDS 25.0%
! CATATAAGATGTTGAAAAAG+TGG - chr3_4:78710398-78710417 None:intergenic 25.0%
! ATTACGAAAAAGTTGGATAT+TGG + chr3_4:78710429-78710448 Msa0525180:intron 25.0%
!! TTGAATGTAATTACTAGTCT+CGG + chr3_4:78710551-78710570 Msa0525180:intron 25.0%
! AAAACATCTTATACCTTACA+CGG + chr3_4:78710808-78710827 Msa0525180:intron 25.0%
!! CTTAAAAAACCTTGATGTTT+TGG + chr3_4:78711512-78711531 Msa0525180:intron 25.0%
! CATTTATTTCCAAAACATCA+AGG - chr3_4:78711524-78711543 None:intergenic 25.0%
!!! TGATGTTTTGGAAATAAATG+TGG + chr3_4:78711524-78711543 Msa0525180:intron 25.0%
!!! AGAAACTGTTTTTGAAATAC+TGG + chr3_4:78711550-78711569 Msa0525180:intron 25.0%
! TGAGTTTGAAAACTTTAGAT+TGG + chr3_4:78711684-78711703 Msa0525180:intron 25.0%
! TCAAATCATTACTAATGTCA+GGG - chr3_4:78712174-78712193 None:intergenic 25.0%
! ATCAAATCATTACTAATGTC+AGG - chr3_4:78712175-78712194 None:intergenic 25.0%
!!! TTGATAATGATACGATATGA+TGG + chr3_4:78712203-78712222 Msa0525180:intron 25.0%
!!! GATGGTAGTTTTTTTTTCTA+TGG + chr3_4:78712221-78712240 Msa0525180:intron 25.0%
!!! GAACAATTTGGTTTTGTATA+TGG + chr3_4:78712456-78712475 Msa0525180:CDS 25.0%
! CTTACTTGATTATAGTATGT+TGG - chr3_4:78712821-78712840 None:intergenic 25.0%
!! ATGATAAGCAAATGTACTTT+TGG + chr3_4:78712956-78712975 Msa0525180:intron 25.0%
! AGAAGATAATCAACCTAAAA+GGG - chr3_4:78713162-78713181 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG - chr3_4:78713163-78713182 None:intergenic 25.0%
! CAATAGATTATGTTACTATC+AGG - chr3_4:78713241-78713260 None:intergenic 25.0%
GTTCATAAGAAAGTAGTAAG+TGG + chr3_4:78710239-78710258 Msa0525180:CDS 30.0%
TAAGAAAGTAGTAAGTGGTT+TGG + chr3_4:78710244-78710263 Msa0525180:CDS 30.0%
ATAACAATAACCCATCTCTT+AGG - chr3_4:78710326-78710345 None:intergenic 30.0%
GAAAAAGTTGGATATTGGAT+TGG + chr3_4:78710434-78710453 Msa0525180:intron 30.0%
! TAACTAACACTTTTGATGGA+AGG - chr3_4:78710621-78710640 None:intergenic 30.0%
! CAGATAACTAACACTTTTGA+TGG - chr3_4:78710625-78710644 None:intergenic 30.0%
!! CATCAAAAGTGTTAGTTATC+TGG + chr3_4:78710623-78710642 Msa0525180:intron 30.0%
AACTTAGTGAGTTAGTTAGT+CGG - chr3_4:78710696-78710715 None:intergenic 30.0%
AGGTAAAAATTCAATGTGCA+TGG - chr3_4:78710735-78710754 None:intergenic 30.0%
! ATTTTTACCTGATCTAGACT+AGG + chr3_4:78710745-78710764 Msa0525180:intron 30.0%
ACTAATCTAAACTAGGCTTT+AGG - chr3_4:78710916-78710935 None:intergenic 30.0%
TCTGACAATGTGTTTATAAG+TGG + chr3_4:78710998-78711017 Msa0525180:intron 30.0%
! TGATACCATCTTTGAAAATC+TGG - chr3_4:78711074-78711093 None:intergenic 30.0%
! TCTGACAAAGTGTTTATAAC+TGG + chr3_4:78711317-78711336 Msa0525180:intron 30.0%
! CTGACAAAGTGTTTATAACT+GGG + chr3_4:78711318-78711337 Msa0525180:intron 30.0%
! TGACAAAGTGTTTATAACTG+GGG + chr3_4:78711319-78711338 Msa0525180:intron 30.0%
!!! AACTGTTTTTGAAATACTGG+CGG + chr3_4:78711553-78711572 Msa0525180:intron 30.0%
ACTTTAGATTGGTATTGCAA+TGG + chr3_4:78711695-78711714 Msa0525180:intron 30.0%
! TTTGCTCTTTTCACATTTAC+AGG + chr3_4:78711748-78711767 Msa0525180:intron 30.0%
! TAGTACAGTCTTCTTTCTTT+TGG + chr3_4:78711837-78711856 Msa0525180:CDS 30.0%
! AGTACAGTCTTCTTTCTTTT+GGG + chr3_4:78711838-78711857 Msa0525180:CDS 30.0%
GGCTTGAAGTTCAAAATTAA+GGG - chr3_4:78711920-78711939 None:intergenic 30.0%
TGGCTTGAAGTTCAAAATTA+AGG - chr3_4:78711921-78711940 None:intergenic 30.0%
! TAATTTTGAACTTCAAGCCA+TGG + chr3_4:78711921-78711940 Msa0525180:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG + chr3_4:78712466-78712485 Msa0525180:CDS 30.0%
!! TAAAGGAAGCATTTATGTGA+AGG - chr3_4:78712520-78712539 None:intergenic 30.0%
AGGGTGTACATATTTCATAA+AGG - chr3_4:78712537-78712556 None:intergenic 30.0%
AGCATTTCTATCGAGAAAAA+GGG - chr3_4:78712556-78712575 None:intergenic 30.0%
AAGCATTTCTATCGAGAAAA+AGG - chr3_4:78712557-78712576 None:intergenic 30.0%
!!! CCAGTTTTCTGTGTTTTTTT+GGG + chr3_4:78712595-78712614 Msa0525180:intron 30.0%
! AAGAAGTTGATTGCTACAAA+CGG + chr3_4:78712671-78712690 Msa0525180:CDS 30.0%
GAACTTTCATTCTTCTTACA+TGG + chr3_4:78712792-78712811 Msa0525180:CDS 30.0%
TGGATTGTTTACTAAGTATG+CGG + chr3_4:78712853-78712872 Msa0525180:intron 30.0%
! TAAGCAAATGTACTTTTGGT+TGG + chr3_4:78712960-78712979 Msa0525180:intron 30.0%
!!! CTTTTAGTTTTTACAGTCCA+AGG + chr3_4:78713023-78713042 Msa0525180:intron 30.0%
AAGTTCAATCTTACAGAATC+TGG + chr3_4:78713456-78713475 Msa0525180:CDS 30.0%
! ATGGCAATTTCTGCAAATTT+TGG + chr3_4:78713507-78713526 Msa0525180:CDS 30.0%
GAGAAGGAAAAAAAGTTGAA+GGG - chr3_4:78713597-78713616 None:intergenic 30.0%
AGAGAAGGAAAAAAAGTTGA+AGG - chr3_4:78713598-78713617 None:intergenic 30.0%
! ATGTTAAGTCTGAGAAGCAT+GGG + chr3_4:78710183-78710202 Msa0525180:CDS 35.0%
! AAAGTAGTAAGTGGTTTGGA+TGG + chr3_4:78710248-78710267 Msa0525180:CDS 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG + chr3_4:78710313-78710332 Msa0525180:CDS 35.0%
TGAAATACCTAGTCTAGATC+AGG - chr3_4:78710755-78710774 None:intergenic 35.0%
CTTATTTCCTTAAGCACTCT+AGG + chr3_4:78710776-78710795 Msa0525180:intron 35.0%
GATGTTAAAGAGTTCCACAT+CGG + chr3_4:78710964-78710983 Msa0525180:intron 35.0%
GACAATGTGTTTATAAGTGG+TGG + chr3_4:78711001-78711020 Msa0525180:intron 35.0%
! CCATCTTTGAAAATCTGGTT+GGG - chr3_4:78711069-78711088 None:intergenic 35.0%
! ACCATCTTTGAAAATCTGGT+TGG - chr3_4:78711070-78711089 None:intergenic 35.0%
TGTTATCAGGTTTCCGTAAT+CGG + chr3_4:78711206-78711225 Msa0525180:intron 35.0%
! GACAAAGTGTTTATAACTGG+GGG + chr3_4:78711320-78711339 Msa0525180:intron 35.0%
AAAGATCAGCTTAGAGAACA+AGG + chr3_4:78711427-78711446 Msa0525180:intron 35.0%
! GTACAGTCTTCTTTCTTTTG+GGG + chr3_4:78711839-78711858 Msa0525180:CDS 35.0%
CAATCTGCAACAAGTATCTA+CGG - chr3_4:78711958-78711977 None:intergenic 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG + chr3_4:78712007-78712026 Msa0525180:CDS 35.0%
! TTTTAGCATTTGGCGTCATT+TGG + chr3_4:78712017-78712036 Msa0525180:CDS 35.0%
TAGAAAAGGCAATCCAAGTT+TGG - chr3_4:78712077-78712096 None:intergenic 35.0%
AACTTCTTCTGGATCTTACT+AGG + chr3_4:78712250-78712269 Msa0525180:intron 35.0%
ACTTCTTCTGGATCTTACTA+GGG + chr3_4:78712251-78712270 Msa0525180:intron 35.0%
GACAGAATATTATTCATGGC+CGG - chr3_4:78712287-78712306 None:intergenic 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG + chr3_4:78712434-78712453 Msa0525180:CDS 35.0%
AATTGTTCCTAGAGAACCAA+AGG - chr3_4:78712444-78712463 None:intergenic 35.0%
! TTGGTTCTCTAGGAACAATT+TGG + chr3_4:78712444-78712463 Msa0525180:CDS 35.0%
!! GCCAGTTTTCTGTGTTTTTT+TGG + chr3_4:78712594-78712613 Msa0525180:intron 35.0%
CCCAAAAAAACACAGAAAAC+TGG - chr3_4:78712598-78712617 None:intergenic 35.0%
! GCAATCAACTTCTTTTCTTC+TGG - chr3_4:78712665-78712684 None:intergenic 35.0%
TTCGACAAAATTAATCCCCA+AGG - chr3_4:78712725-78712744 None:intergenic 35.0%
TGTTTACTAAGTATGCGGTT+TGG + chr3_4:78712858-78712877 Msa0525180:intron 35.0%
! TTTTCGGCAAAAGAACAAAG+AGG - chr3_4:78713130-78713149 None:intergenic 35.0%
! AAAAGGGAGACTAAGGTTTT+CGG - chr3_4:78713146-78713165 None:intergenic 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG + chr3_4:78713146-78713165 Msa0525180:intron 35.0%
CACGAATAGAATCAGAAGAA+TGG - chr3_4:78713188-78713207 None:intergenic 35.0%
! GACTATTTTGCGTTTTACCA+TGG + chr3_4:78713478-78713497 Msa0525180:CDS 35.0%
! GCAATTTCTGCAAATTTTGG+TGG + chr3_4:78713510-78713529 Msa0525180:CDS 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG + chr3_4:78713514-78713533 Msa0525180:CDS 35.0%
GAAGAAGAAGAAGAAGGTGA+TGG - chr3_4:78710065-78710084 None:intergenic 40.0%
AGTGGTGAAGAAGAAGAAGA+AGG - chr3_4:78710071-78710090 None:intergenic 40.0%
! TGAATGGTTGAGGTTTGTTC+TGG - chr3_4:78710102-78710121 None:intergenic 40.0%
GATGTTAAGTCTGAGAAGCA+TGG + chr3_4:78710182-78710201 Msa0525180:CDS 40.0%
TCATACTTACTTGATGCCTC+TGG - chr3_4:78710209-78710228 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG + chr3_4:78710208-78710227 Msa0525180:CDS 40.0%
! TTTGGATGGTGATGATGTTG+AGG + chr3_4:78710262-78710281 Msa0525180:CDS 40.0%
TTAGGAAAAACTTCCCACCA+AGG - chr3_4:78710308-78710327 None:intergenic 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG + chr3_4:78710312-78710331 Msa0525180:CDS 40.0%
AGTCAAACTCTTTCCGTGTA+AGG - chr3_4:78710824-78710843 None:intergenic 40.0%
AGACTATCTCTTATCCGATG+TGG - chr3_4:78710981-78711000 None:intergenic 40.0%
AAAACCAGCTTGTGAGATGA+GGG - chr3_4:78711030-78711049 None:intergenic 40.0%
!!! ATCTCACAAGCTGGTTTTGT+GGG + chr3_4:78711032-78711051 Msa0525180:intron 40.0%
! CCCAACCAGATTTTCAAAGA+TGG + chr3_4:78711066-78711085 Msa0525180:intron 40.0%
TGTGTTAAAGAGTCCCACAT+CGG + chr3_4:78711171-78711190 Msa0525180:intron 40.0%
GATTACGGAAACCTGATAAC+AGG - chr3_4:78711207-78711226 None:intergenic 40.0%
GTTATCAGGTTTCCGTAATC+GGG + chr3_4:78711207-78711226 Msa0525180:intron 40.0%
GACCATCTCTTATCTGATGT+GGG - chr3_4:78711299-78711318 None:intergenic 40.0%
AGACCATCTCTTATCTGATG+TGG - chr3_4:78711300-78711319 None:intergenic 40.0%
TTAACGCAATCCCACAAAAC+CGG - chr3_4:78711364-78711383 None:intergenic 40.0%
ACTGCAATTCATTGGAGTAC+TGG - chr3_4:78711645-78711664 None:intergenic 40.0%
TCTCTCTCACTGCAATTCAT+TGG - chr3_4:78711653-78711672 None:intergenic 40.0%
TGTACTAAACCTACAGTGGT+GGG - chr3_4:78711824-78711843 None:intergenic 40.0%
AGACTGTACTAAACCTACAG+TGG - chr3_4:78711828-78711847 None:intergenic 40.0%
! AGATACTTGTTGCAGATTGC+TGG + chr3_4:78711959-78711978 Msa0525180:intron 40.0%
ACTAATGTCAGGGACAGTAT+CGG - chr3_4:78712164-78712183 None:intergenic 40.0%
TATGGGAAGCTAACTTCTTC+TGG + chr3_4:78712239-78712258 Msa0525180:intron 40.0%
GAGAAGTAGATCATTAGCTC+TGG + chr3_4:78712328-78712347 Msa0525180:CDS 40.0%
!! TCATTAGCTCTGGTATACAG+TGG + chr3_4:78712338-78712357 Msa0525180:CDS 40.0%
GTGAATCAGGAAAGGTGAAA+AGG - chr3_4:78712393-78712412 None:intergenic 40.0%
CCAAAGGAGTAAAACACTGA+TGG - chr3_4:78712428-78712447 None:intergenic 40.0%
! CCATCAGTGTTTTACTCCTT+TGG + chr3_4:78712425-78712444 Msa0525180:CDS 40.0%
!!! TGTGTTTTTTTGGGACCTGT+AGG + chr3_4:78712604-78712623 Msa0525180:intron 40.0%
AGCATTTCAGGATCATCAAG+TGG - chr3_4:78712641-78712660 None:intergenic 40.0%
! TTTTCTTCTGGCAGCATTTC+AGG - chr3_4:78712653-78712672 None:intergenic 40.0%
! TGCTACAAACGGTTTTTCCA+AGG + chr3_4:78712682-78712701 Msa0525180:CDS 40.0%
! TTTTTCCAAGGAACCTGTGA+AGG + chr3_4:78712694-78712713 Msa0525180:CDS 40.0%
TATTTCCTTCACAGGTTCCT+TGG - chr3_4:78712702-78712721 None:intergenic 40.0%
AACCTGTGAAGGAAATACCT+TGG + chr3_4:78712705-78712724 Msa0525180:CDS 40.0%
ACCTGTGAAGGAAATACCTT+GGG + chr3_4:78712706-78712725 Msa0525180:CDS 40.0%
! TTTTGTCGAAACCACCAGTT+TGG + chr3_4:78712735-78712754 Msa0525180:CDS 40.0%
TTTGTCGAAACCACCAGTTT+GGG + chr3_4:78712736-78712755 Msa0525180:CDS 40.0%
TCAACCTAAAAGGGAGACTA+AGG - chr3_4:78713153-78713172 None:intergenic 40.0%
! CGTTTTACCATGGCTTACTA+TGG + chr3_4:78713488-78713507 Msa0525180:CDS 40.0%
GAAATTGCCATAGTAAGCCA+TGG - chr3_4:78713498-78713517 None:intergenic 40.0%
! GAAGAAGAAGAAGGTGATGG+TGG - chr3_4:78710062-78710081 None:intergenic 45.0%
TTTGTTCTGGTACGTGACAG+TGG - chr3_4:78710089-78710108 None:intergenic 45.0%
ATGGAAACGGAGAAGGTGAA+TGG - chr3_4:78710118-78710137 None:intergenic 45.0%
! GGTGATGATGTTGAGGTAGA+AGG + chr3_4:78710269-78710288 Msa0525180:CDS 45.0%
AAGGAACAAGCTCTTCTCCT+TGG + chr3_4:78710288-78710307 Msa0525180:CDS 45.0%
AACAAGCTCTTCTCCTTGGT+GGG + chr3_4:78710292-78710311 Msa0525180:CDS 45.0%
GACACATCAGTGTTAGACTC+AGG - chr3_4:78710584-78710603 None:intergenic 45.0%
!! CCTTAAGCACTCTAGGATAG+CGG + chr3_4:78710783-78710802 Msa0525180:intron 45.0%
!! ACTAGGCTTTAGGCCCTATT+TGG - chr3_4:78710906-78710925 None:intergenic 45.0%
CAAAACCAGCTTGTGAGATG+AGG - chr3_4:78711031-78711050 None:intergenic 45.0%
!!! CATCTCACAAGCTGGTTTTG+TGG + chr3_4:78711031-78711050 Msa0525180:intron 45.0%
!!! TCTCACAAGCTGGTTTTGTG+GGG + chr3_4:78711033-78711052 Msa0525180:intron 45.0%
AGCCTACTCCTAGATCTGTT+GGG + chr3_4:78711095-78711114 Msa0525180:intron 45.0%
! ATCTGGAGCGTGGACATAAA+TGG - chr3_4:78711128-78711147 None:intergenic 45.0%
AAAGAGTCCCACATCGGATA+AGG + chr3_4:78711177-78711196 Msa0525180:intron 45.0%
AAGAGTCCCACATCGGATAA+GGG + chr3_4:78711178-78711197 Msa0525180:intron 45.0%
TACGGAAACCTGATAACAGG+TGG - chr3_4:78711204-78711223 None:intergenic 45.0%
AATGATAGGTGGCCCGATTA+CGG - chr3_4:78711222-78711241 None:intergenic 45.0%
GCGTGGACATAAATGATAGG+TGG - chr3_4:78711233-78711252 None:intergenic 45.0%
GGAGCGTGGACATAAATGAT+AGG - chr3_4:78711236-78711255 None:intergenic 45.0%
! AGGACTAAACATTTGGAGCG+TGG - chr3_4:78711250-78711269 None:intergenic 45.0%
CACGCTCAGGACTAAACATT+TGG - chr3_4:78711257-78711276 None:intergenic 45.0%
AATGTTTAGTCCTGAGCGTG+AGG + chr3_4:78711257-78711276 Msa0525180:intron 45.0%
ATGTTTAGTCCTGAGCGTGA+GGG + chr3_4:78711258-78711277 Msa0525180:intron 45.0%
GTCCCACATCAGATAAGAGA+TGG + chr3_4:78711294-78711313 Msa0525180:intron 45.0%
!! ACCTTACAAGCCGGTTTTGT+GGG + chr3_4:78711351-78711370 Msa0525180:intron 45.0%
CAGTTGTACTCTGCTGACAT+TGG - chr3_4:78711797-78711816 None:intergenic 45.0%
CAATGTCAGCAGAGTACAAC+TGG + chr3_4:78711795-78711814 Msa0525180:CDS 45.0%
GTACTAAACCTACAGTGGTG+GGG - chr3_4:78711823-78711842 None:intergenic 45.0%
CTGTACTAAACCTACAGTGG+TGG - chr3_4:78711825-78711844 None:intergenic 45.0%
TGAAACCACATACCTGAGTG+AGG - chr3_4:78711871-78711890 None:intergenic 45.0%
! TACTTGTTGCAGATTGCTGG+TGG + chr3_4:78711962-78711981 Msa0525180:intron 45.0%
TGCAGATTGCTGGTGGAATA+TGG + chr3_4:78711969-78711988 Msa0525180:intron 45.0%
GCAGATTGCTGGTGGAATAT+GGG + chr3_4:78711970-78711989 Msa0525180:intron 45.0%
TAGCATTTGGCGTCATTTGG+TGG + chr3_4:78712020-78712039 Msa0525180:CDS 45.0%
AATCCAAGTTTGGCAGCTAC+GGG - chr3_4:78712067-78712086 None:intergenic 45.0%
CAATCCAAGTTTGGCAGCTA+CGG - chr3_4:78712068-78712087 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG - chr3_4:78712091-78712110 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG + chr3_4:78712096-78712115 Msa0525180:CDS 45.0%
TTAGTTGCCCGTGCATTCAT+GGG + chr3_4:78712097-78712116 Msa0525180:CDS 45.0%
ACCAATTCCCATGAATGCAC+GGG - chr3_4:78712107-78712126 None:intergenic 45.0%
CACCAATTCCCATGAATGCA+CGG - chr3_4:78712108-78712127 None:intergenic 45.0%
TGCATTCATGGGAATTGGTG+AGG + chr3_4:78712108-78712127 Msa0525180:CDS 45.0%
CTAATGTCAGGGACAGTATC+GGG - chr3_4:78712163-78712182 None:intergenic 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG + chr3_4:78712265-78712284 Msa0525180:intron 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG + chr3_4:78712301-78712320 Msa0525180:CDS 45.0%
GTATACAGTGGCATGTACCT+TGG + chr3_4:78712350-78712369 Msa0525180:CDS 45.0%
CCATACTGGTGAATCAGGAA+AGG - chr3_4:78712401-78712420 None:intergenic 45.0%
CCTTTCCTGATTCACCAGTA+TGG + chr3_4:78712398-78712417 Msa0525180:CDS 45.0%
TCCTGATTCACCAGTATGGA+TGG + chr3_4:78712402-78712421 Msa0525180:CDS 45.0%
CCTGTGAAGGAAATACCTTG+GGG + chr3_4:78712707-78712726 Msa0525180:CDS 45.0%
GCAAAAGTGGGACACTATCA+GGG - chr3_4:78712762-78712781 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG - chr3_4:78712784-78712803 None:intergenic 45.0%
!! ACTAAGTATGCGGTTTGGTG+TGG + chr3_4:78712863-78712882 Msa0525180:intron 45.0%
!! GGTTTGGTGTGGATGAAGTT+AGG + chr3_4:78712874-78712893 Msa0525180:intron 45.0%
CCTTGTAACAGATACACCTC+GGG - chr3_4:78713559-78713578 None:intergenic 45.0%
CCCTTGTAACAGATACACCT+CGG - chr3_4:78713560-78713579 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG + chr3_4:78713557-78713576 Msa0525180:CDS 45.0%
ATCTGTTACAAGGGTTCGCA+AGG + chr3_4:78713566-78713585 Msa0525180:CDS 45.0%
!!! AAATTATTTTTTTTTTTTGA+CGG - chr3_4:78713098-78713117 None:intergenic 5.0%
ACGGAGAAGGTGAATGGTTG+AGG - chr3_4:78710112-78710131 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG - chr3_4:78710125-78710144 None:intergenic 50.0%
CACAGCAGGTGCAATGGAAA+CGG - chr3_4:78710131-78710150 None:intergenic 50.0%
GAACAAGCTCTTCTCCTTGG+TGG + chr3_4:78710291-78710310 Msa0525180:CDS 50.0%
! CCGCTATCCTAGAGTGCTTA+AGG - chr3_4:78710786-78710805 None:intergenic 50.0%
GAGCCTACTCCTAGATCTGT+TGG + chr3_4:78711094-78711113 Msa0525180:intron 50.0%
GGAGCGTGGACATAAATGGT+GGG - chr3_4:78711124-78711143 None:intergenic 50.0%
TGGAGCGTGGACATAAATGG+TGG - chr3_4:78711125-78711144 None:intergenic 50.0%
GATAAGGGCCACCTGTTATC+AGG + chr3_4:78711193-78711212 Msa0525180:intron 50.0%
TGTTTAGTCCTGAGCGTGAG+GGG + chr3_4:78711259-78711278 Msa0525180:intron 50.0%
GCAATGCTCACCTTACAAGC+CGG + chr3_4:78711342-78711361 Msa0525180:intron 50.0%
!! CACCTTACAAGCCGGTTTTG+TGG + chr3_4:78711350-78711369 Msa0525180:intron 50.0%
!! TCCCACAAAACCGGCTTGTA+AGG - chr3_4:78711355-78711374 None:intergenic 50.0%
GCAGTGAGAGAGAGAACAGA+CGG + chr3_4:78711660-78711679 Msa0525180:intron 50.0%
TACCTCCTCACTCAGGTATG+TGG + chr3_4:78711863-78711882 Msa0525180:intron 50.0%
AACCACATACCTGAGTGAGG+AGG - chr3_4:78711868-78711887 None:intergenic 50.0%
! TGGAATATGGGCTGACACAG+TGG + chr3_4:78711982-78712001 Msa0525180:CDS 50.0%
! GGAATATGGGCTGACACAGT+GGG + chr3_4:78711983-78712002 Msa0525180:CDS 50.0%
GGGAGTTAGGATTGTGGCAA+CGG - chr3_4:78712047-78712066 None:intergenic 50.0%
AGCTACGGGAGTTAGGATTG+TGG - chr3_4:78712053-78712072 None:intergenic 50.0%
GATCTACTTCTCTCTGCCAC+AGG - chr3_4:78712320-78712339 None:intergenic 50.0%
CAGTGGCATGTACCTTGGAT+CGG + chr3_4:78712355-78712374 Msa0525180:CDS 50.0%
ATGTACCTTGGATCGGTCAC+TGG + chr3_4:78712362-78712381 Msa0525180:CDS 50.0%
GCCATCCATACTGGTGAATC+AGG - chr3_4:78712406-78712425 None:intergenic 50.0%
ACACTGATGGCCATCCATAC+TGG - chr3_4:78712415-78712434 None:intergenic 50.0%
! CCCCAAGGTATTTCCTTCAC+AGG - chr3_4:78712710-78712729 None:intergenic 50.0%
GGCAAAAGTGGGACACTATC+AGG - chr3_4:78712763-78712782 None:intergenic 50.0%
!! TGTCCCACTTTTGCCACAAC+TGG + chr3_4:78712768-78712787 Msa0525180:CDS 50.0%
!! GTCCCACTTTTGCCACAACT+GGG + chr3_4:78712769-78712788 Msa0525180:CDS 50.0%
!! TCCCACTTTTGCCACAACTG+GGG + chr3_4:78712770-78712789 Msa0525180:CDS 50.0%
TCCCCAGTTGTGGCAAAAGT+GGG - chr3_4:78712774-78712793 None:intergenic 50.0%
TTCCCCAGTTGTGGCAAAAG+TGG - chr3_4:78712775-78712794 None:intergenic 50.0%
CCCGAGGTGTATCTGTTACA+AGG + chr3_4:78713556-78713575 Msa0525180:CDS 50.0%
CATTGCACCTGCTGTGTCAC+CGG + chr3_4:78710135-78710154 Msa0525180:CDS 55.0%
TGTGTCACCGGAGAGGAAGA+GGG + chr3_4:78710147-78710166 Msa0525180:CDS 55.0%
ACACCTTCCCTCTTCCTCTC+CGG - chr3_4:78710157-78710176 None:intergenic 55.0%
! GAGAGGAAGAGGGAAGGTGT+GGG + chr3_4:78710157-78710176 Msa0525180:CDS 55.0%
GCAACCCTCATCTCACAAGC+TGG + chr3_4:78711023-78711042 Msa0525180:intron 55.0%
GGCCCAACAGATCTAGGAGT+AGG - chr3_4:78711100-78711119 None:intergenic 55.0%
! GCGTGGACATAAATGGTGGG+TGG - chr3_4:78711121-78711140 None:intergenic 55.0%
! AGGACTAGACATCTGGAGCG+TGG - chr3_4:78711138-78711157 None:intergenic 55.0%
CGCTCCAGATGTCTAGTCCT+AGG + chr3_4:78711138-78711157 Msa0525180:intron 55.0%
CACGCCTAGGACTAGACATC+TGG - chr3_4:78711145-78711164 None:intergenic 55.0%
ATGTCTAGTCCTAGGCGTGC+AGG + chr3_4:78711146-78711165 Msa0525180:intron 55.0%
TGTCTAGTCCTAGGCGTGCA+GGG + chr3_4:78711147-78711166 Msa0525180:intron 55.0%
AGGTGGCCCTTATCCGATGT+GGG - chr3_4:78711187-78711206 None:intergenic 55.0%
GTTTAGTCCTGAGCGTGAGG+GGG + chr3_4:78711260-78711279 Msa0525180:intron 55.0%
AACTGGAACCCCACCACTGT+AGG + chr3_4:78711812-78711831 Msa0525180:CDS 55.0%
TTGGGGATACCTCCTCACTC+AGG + chr3_4:78711856-78711875 Msa0525180:CDS 55.0%
CTACGGATGCATCAGAGCCA+TGG - chr3_4:78711941-78711960 None:intergenic 55.0%
! ATATGGGCTGACACAGTGGG+AGG + chr3_4:78711986-78712005 Msa0525180:CDS 55.0%
GTTTGGCAGCTACGGGAGTT+AGG - chr3_4:78712060-78712079 None:intergenic 55.0%
ACTCCCGTAGCTGCCAAACT+TGG + chr3_4:78712061-78712080 Msa0525180:CDS 55.0%
GCCCGTGCATTCATGGGAAT+TGG + chr3_4:78712103-78712122 Msa0525180:CDS 55.0%
CCAATCCAGTGACCGATCCA+AGG - chr3_4:78712370-78712389 None:intergenic 55.0%
CCTTGGATCGGTCACTGGAT+TGG + chr3_4:78712367-78712386 Msa0525180:CDS 55.0%
GTGGCGAACTATGTGCCTAC+AGG - chr3_4:78712622-78712641 None:intergenic 55.0%
ACTATCAGGGCCCAAACTGG+TGG - chr3_4:78712749-78712768 None:intergenic 55.0%
GACACTATCAGGGCCCAAAC+TGG - chr3_4:78712752-78712771 None:intergenic 55.0%
GCAGACACTCTTGTAACCCG+AGG + chr3_4:78713540-78713559 Msa0525180:CDS 55.0%
CGGTGACACAGCAGGTGCAA+TGG - chr3_4:78710137-78710156 None:intergenic 60.0%
TTCCTCTCCGGTGACACAGC+AGG - chr3_4:78710145-78710164 None:intergenic 60.0%
CTGTGTCACCGGAGAGGAAG+AGG + chr3_4:78710146-78710165 Msa0525180:CDS 60.0%
TCACCGGAGAGGAAGAGGGA+AGG + chr3_4:78710151-78710170 Msa0525180:CDS 60.0%
GGAGAGGAAGAGGGAAGGTG+TGG + chr3_4:78710156-78710175 Msa0525180:CDS 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG + chr3_4:78710190-78710209 Msa0525180:CDS 60.0%
GTGGGTGGCCCAACAGATCT+AGG - chr3_4:78711106-78711125 None:intergenic 60.0%
GTCTAGTCCTAGGCGTGCAG+GGG + chr3_4:78711148-78711167 Msa0525180:intron 60.0%
TAACACACCCCTGCACGCCT+AGG - chr3_4:78711158-78711177 None:intergenic 60.0%
CAGGTGGCCCTTATCCGATG+TGG - chr3_4:78711188-78711207 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG - chr3_4:78711270-78711289 None:intergenic 60.0%
CACCTGCTGTGTCACCGGAG+AGG + chr3_4:78710140-78710159 Msa0525180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78709996 78713663 78709996 ID=Msa0525180;Name=Msa0525180
chr3_4 mRNA 78709996 78713663 78709996 ID=Msa0525180-mRNA-1;Parent=Msa0525180;Name=Msa0525180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=30|0.83|0.85|0.85|1|1|7|0|404
chr3_4 exon 78709996 78710385 78709996 ID=Msa0525180-mRNA-1:exon:23412;Parent=Msa0525180-mRNA-1
chr3_4 exon 78711770 78711877 78711770 ID=Msa0525180-mRNA-1:exon:23413;Parent=Msa0525180-mRNA-1
chr3_4 exon 78711974 78712129 78711974 ID=Msa0525180-mRNA-1:exon:23414;Parent=Msa0525180-mRNA-1
chr3_4 exon 78712272 78712487 78712272 ID=Msa0525180-mRNA-1:exon:23415;Parent=Msa0525180-mRNA-1
chr3_4 exon 78712626 78712835 78712626 ID=Msa0525180-mRNA-1:exon:23416;Parent=Msa0525180-mRNA-1
chr3_4 exon 78713450 78713587 78713450 ID=Msa0525180-mRNA-1:exon:23417;Parent=Msa0525180-mRNA-1
chr3_4 exon 78713637 78713663 78713637 ID=Msa0525180-mRNA-1:exon:23418;Parent=Msa0525180-mRNA-1
chr3_4 five_prime_UTR 78709996 78710025 78709996 ID=Msa0525180-mRNA-1:five_prime_utr;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78710026 78710385 78710026 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78711770 78711877 78711770 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78711974 78712129 78711974 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78712272 78712487 78712272 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78712626 78712835 78712626 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78713450 78713587 78713450 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
chr3_4 CDS 78713637 78713663 78713637 ID=Msa0525180-mRNA-1:cds;Parent=Msa0525180-mRNA-1
Gene Sequence

>Msa0525180

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGATGATGTTGAGGTAGAAGGAACAAGCTCTTCTCCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTGTGCTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCCGTTGCCACAATCCTAACTCCCGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCAGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGCATGTACCTTGGATCGGTCACTGGATTGGCCTTTTCACCTTTCCTGATTCACCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAATTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCTGAAATGCTGCCAGAAGAAAAGAAGTTGATTGCTACAAACGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCAGTTTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCATGGCTTACTATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGCTTATTCTTGTCAAAATAGTTCTTTAG

Protein sequence

>Msa0525180

MSSRALLFSFSPPSPSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGDDVEVEGTSSSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTIWFCIWLSKAHSSPLDDPEMLPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKLILVKIVL*