Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440480 | XP_013470516.1 | 90.574 | 244 | 11 | 2 | 2 | 235 | 3 | 244 | 2.24e-151 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440480 | sp|Q9ASS6|PNSL5_ARATH | 80.347 | 173 | 34 | 0 | 63 | 235 | 85 | 257 | 4.50e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440480 | I3S7Z5 | 90.574 | 244 | 11 | 2 | 2 | 235 | 3 | 244 | 1.07e-151 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0436450 | Msa0440480 | 0.816095 | 6.597451e-52 | -8.615850e-47 |
| Msa0440480 | Msa0538570 | 0.800839 | 1.193859e-48 | -8.615850e-47 |
| Msa0440480 | Msa0594390 | 0.823575 | 1.286594e-53 | -8.615850e-47 |
| Msa0440480 | Msa0703720 | 0.805783 | 1.130046e-49 | -8.615850e-47 |
| Msa0440480 | Msa0703760 | 0.804384 | 2.216604e-49 | -8.615850e-47 |
| Msa0440480 | Msa1350670 | 0.803920 | 2.769469e-49 | -8.615850e-47 |
| Msa0440480 | Msa1379980 | 0.813682 | 2.262098e-51 | -8.615850e-47 |
| Msa0440480 | Msa1389470 | 0.876445 | 1.388626e-68 | -8.615850e-47 |
| Msa0440480 | Msa1391370 | 0.868163 | 8.007606e-66 | -8.615850e-47 |
| Msa0440480 | Msa1462510 | 0.877659 | 5.262723e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440480 | MtrunA17_Chr1g0213971 | 90.574 | 244 | 11 | 2 | 2 | 235 | 3 | 244 | 2.06e-155 | 431 |
| Msa0440480 | MtrunA17_Chr7g0270991 | 61.026 | 195 | 73 | 1 | 40 | 234 | 68 | 259 | 1.29e-83 | 249 |
| Msa0440480 | MtrunA17_Chr1g0193711 | 60.000 | 210 | 76 | 3 | 30 | 234 | 43 | 249 | 3.31e-83 | 248 |
| Msa0440480 | MtrunA17_Chr3g0104751 | 62.147 | 177 | 56 | 3 | 65 | 234 | 31 | 203 | 3.89e-70 | 213 |
| Msa0440480 | MtrunA17_Chr3g0145501 | 59.649 | 171 | 58 | 3 | 69 | 232 | 13 | 179 | 6.27e-66 | 202 |
| Msa0440480 | MtrunA17_Chr3g0113441 | 53.846 | 208 | 71 | 5 | 46 | 232 | 28 | 231 | 4.62e-65 | 201 |
| Msa0440480 | MtrunA17_Chr7g0274841 | 57.895 | 171 | 61 | 3 | 69 | 232 | 5 | 171 | 1.96e-64 | 197 |
| Msa0440480 | MtrunA17_Chr4g0038431 | 59.195 | 174 | 60 | 3 | 66 | 232 | 2 | 171 | 2.41e-64 | 197 |
| Msa0440480 | MtrunA17_Chr8g0374621 | 55.814 | 172 | 65 | 2 | 69 | 232 | 5 | 173 | 4.36e-58 | 187 |
| Msa0440480 | MtrunA17_Chr8g0353571 | 51.613 | 186 | 81 | 3 | 53 | 232 | 3 | 185 | 2.25e-56 | 177 |
| Msa0440480 | MtrunA17_Chr4g0045321 | 53.757 | 173 | 69 | 2 | 69 | 233 | 5 | 174 | 3.26e-56 | 183 |
| Msa0440480 | MtrunA17_Chr4g0037281 | 47.938 | 194 | 92 | 2 | 47 | 233 | 25 | 216 | 1.11e-55 | 177 |
| Msa0440480 | MtrunA17_Chr7g0260441 | 55.556 | 171 | 64 | 3 | 70 | 232 | 9 | 175 | 1.78e-53 | 182 |
| Msa0440480 | MtrunA17_Chr2g0321111 | 52.778 | 144 | 63 | 3 | 84 | 226 | 470 | 609 | 1.37e-40 | 146 |
| Msa0440480 | MtrunA17_Chr7g0266721 | 47.917 | 144 | 70 | 4 | 84 | 226 | 18 | 157 | 8.74e-37 | 127 |
| Msa0440480 | MtrunA17_Chr3g0138061 | 44.444 | 171 | 83 | 3 | 70 | 232 | 12 | 178 | 5.72e-35 | 131 |
| Msa0440480 | MtrunA17_Chr8g0351571 | 47.945 | 146 | 69 | 4 | 84 | 227 | 9 | 149 | 5.68e-34 | 119 |
| Msa0440480 | MtrunA17_Chr1g0149061 | 46.000 | 150 | 67 | 4 | 70 | 210 | 9 | 153 | 3.07e-31 | 120 |
| Msa0440480 | MtrunA17_Chr3g0122871 | 53.333 | 120 | 28 | 3 | 128 | 220 | 1 | 119 | 6.35e-31 | 110 |
| Msa0440480 | MtrunA17_Chr5g0401141 | 46.528 | 144 | 72 | 4 | 85 | 227 | 354 | 493 | 8.22e-31 | 119 |
| Msa0440480 | MtrunA17_Chr6g0484281 | 39.474 | 152 | 79 | 5 | 84 | 226 | 9 | 156 | 1.27e-19 | 87.4 |
| Msa0440480 | MtrunA17_Chr2g0288371 | 42.143 | 140 | 74 | 6 | 85 | 221 | 22 | 157 | 1.42e-19 | 87.0 |
| Msa0440480 | MtrunA17_Chr8g0357591 | 38.816 | 152 | 80 | 5 | 84 | 226 | 9 | 156 | 2.69e-18 | 83.6 |
| Msa0440480 | MtrunA17_Chr2g0305071 | 27.049 | 244 | 116 | 10 | 54 | 235 | 44 | 287 | 1.32e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440480 | AT5G13120.2 | 80.347 | 173 | 34 | 0 | 63 | 235 | 81 | 253 | 4.21e-107 | 309 |
| Msa0440480 | AT5G13120.1 | 80.347 | 173 | 34 | 0 | 63 | 235 | 85 | 257 | 4.57e-107 | 309 |
| Msa0440480 | AT3G62030.1 | 64.249 | 193 | 65 | 2 | 43 | 234 | 69 | 258 | 1.40e-86 | 257 |
| Msa0440480 | AT3G62030.3 | 63.542 | 192 | 67 | 1 | 43 | 234 | 69 | 257 | 1.62e-86 | 257 |
| Msa0440480 | AT3G62030.2 | 64.249 | 193 | 65 | 2 | 43 | 234 | 122 | 311 | 1.25e-85 | 257 |
| Msa0440480 | AT2G29960.1 | 61.017 | 177 | 58 | 3 | 65 | 234 | 29 | 201 | 3.67e-69 | 211 |
| Msa0440480 | AT2G29960.3 | 61.017 | 177 | 58 | 3 | 65 | 234 | 29 | 201 | 3.67e-69 | 211 |
| Msa0440480 | AT5G58710.1 | 60.452 | 177 | 59 | 3 | 65 | 234 | 32 | 204 | 5.13e-69 | 211 |
| Msa0440480 | AT2G21130.1 | 60.819 | 171 | 56 | 3 | 69 | 232 | 6 | 172 | 5.46e-68 | 207 |
| Msa0440480 | AT2G16600.1 | 60.234 | 171 | 57 | 3 | 69 | 232 | 6 | 172 | 7.91e-67 | 204 |
| Msa0440480 | AT4G38740.1 | 59.064 | 171 | 59 | 3 | 69 | 232 | 5 | 171 | 1.31e-65 | 201 |
| Msa0440480 | AT3G56070.1 | 57.310 | 171 | 62 | 3 | 69 | 232 | 5 | 171 | 5.86e-64 | 197 |
| Msa0440480 | AT3G56070.2 | 57.310 | 171 | 62 | 3 | 69 | 232 | 5 | 171 | 5.86e-64 | 197 |
| Msa0440480 | AT4G34870.1 | 58.480 | 171 | 60 | 3 | 69 | 232 | 5 | 171 | 3.42e-62 | 192 |
| Msa0440480 | AT3G55920.1 | 57.062 | 177 | 63 | 4 | 66 | 234 | 57 | 228 | 4.68e-62 | 194 |
| Msa0440480 | AT2G29960.2 | 57.627 | 177 | 54 | 4 | 65 | 234 | 29 | 191 | 3.55e-61 | 190 |
| Msa0440480 | AT4G34960.1 | 50.265 | 189 | 84 | 2 | 52 | 233 | 31 | 216 | 8.23e-57 | 181 |
| Msa0440480 | AT2G15790.1 | 56.069 | 173 | 65 | 2 | 69 | 233 | 5 | 174 | 1.34e-56 | 184 |
| Msa0440480 | AT2G38730.1 | 54.438 | 169 | 68 | 3 | 70 | 232 | 34 | 199 | 3.95e-56 | 178 |
| Msa0440480 | AT2G16600.2 | 55.488 | 164 | 54 | 3 | 69 | 232 | 6 | 150 | 8.39e-56 | 175 |
| Msa0440480 | AT3G63400.2 | 57.647 | 170 | 60 | 3 | 70 | 231 | 9 | 174 | 1.01e-53 | 177 |
| Msa0440480 | AT3G63400.3 | 57.647 | 170 | 60 | 3 | 70 | 231 | 9 | 174 | 3.94e-52 | 177 |
| Msa0440480 | AT3G63400.4 | 57.647 | 170 | 60 | 3 | 70 | 231 | 9 | 174 | 3.94e-52 | 177 |
| Msa0440480 | AT3G63400.1 | 57.647 | 170 | 60 | 3 | 70 | 231 | 9 | 174 | 3.94e-52 | 177 |
| Msa0440480 | AT4G34960.2 | 51.389 | 144 | 60 | 2 | 52 | 188 | 31 | 171 | 5.31e-42 | 141 |
| Msa0440480 | AT3G44600.1 | 52.778 | 144 | 63 | 3 | 84 | 226 | 484 | 623 | 9.61e-41 | 147 |
| Msa0440480 | AT2G36130.1 | 46.528 | 144 | 72 | 4 | 84 | 226 | 18 | 157 | 1.28e-37 | 129 |
| Msa0440480 | AT1G01940.1 | 46.897 | 145 | 72 | 4 | 84 | 227 | 9 | 149 | 2.13e-35 | 124 |
| Msa0440480 | AT3G22920.1 | 44.828 | 174 | 75 | 7 | 69 | 232 | 5 | 167 | 4.76e-32 | 117 |
| Msa0440480 | AT5G67530.1 | 46.154 | 143 | 72 | 4 | 85 | 226 | 353 | 491 | 1.74e-31 | 121 |
| Msa0440480 | AT4G32420.1 | 41.243 | 177 | 90 | 4 | 65 | 232 | 4 | 175 | 8.11e-28 | 111 |
| Msa0440480 | AT4G32420.5 | 41.243 | 177 | 90 | 4 | 65 | 232 | 4 | 175 | 8.11e-28 | 111 |
| Msa0440480 | AT4G32420.3 | 41.243 | 177 | 90 | 4 | 65 | 232 | 4 | 175 | 8.11e-28 | 111 |
| Msa0440480 | AT4G32420.6 | 41.243 | 177 | 90 | 4 | 65 | 232 | 4 | 175 | 8.11e-28 | 111 |
| Msa0440480 | AT4G32420.4 | 41.935 | 155 | 77 | 3 | 65 | 210 | 4 | 154 | 6.99e-26 | 105 |
| Msa0440480 | AT1G53720.2 | 40.132 | 152 | 78 | 5 | 84 | 226 | 9 | 156 | 1.21e-22 | 94.7 |
| Msa0440480 | AT4G33060.1 | 43.262 | 141 | 71 | 7 | 85 | 221 | 22 | 157 | 4.05e-22 | 94.7 |
| Msa0440480 | AT1G53720.1 | 40.132 | 152 | 78 | 5 | 84 | 226 | 9 | 156 | 1.02e-21 | 93.6 |
Find 83 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGATTGTCACCTTCTTT+AGG | 0.241303 | 3_3:+7800470 | None:intergenic |
| GATCAGAGGCATGTTGTATT+TGG | 0.249985 | 3_3:-7800562 | Msa0440480:CDS |
| ACTGATTGTCACCTTCTTTA+GGG | 0.273487 | 3_3:+7800471 | None:intergenic |
| TGGAAGGCATGGACATTGTT+AGG | 0.314434 | 3_3:-7800531 | Msa0440480:CDS |
| TAGGTCCTAGTATGAAAATA+AGG | 0.319359 | 3_3:+7800312 | None:intergenic |
| CAAGGAGGAGACTTTGATAA+AGG | 0.345816 | 3_3:-7801085 | Msa0440480:CDS |
| TGTTGTATTTGGCCAAGTTT+TGG | 0.352436 | 3_3:-7800551 | Msa0440480:CDS |
| AATAGTTGGTAAAAGTTTGT+AGG | 0.370817 | 3_3:+7800293 | None:intergenic |
| TCCACCAGTGAGAAGGGCTT+TGG | 0.372862 | 3_3:-7801154 | Msa0440480:CDS |
| CCAACTATTTGTATTCTAGT+AGG | 0.384001 | 3_3:-7800279 | Msa0440480:three_prime_UTR |
| ATCTATCTATCGCAGGGAAC+TGG | 0.385423 | 3_3:-7800993 | Msa0440480:intron |
| AACAAAACATGTCAAGCAAT+TGG | 0.393584 | 3_3:+7800433 | None:intergenic |
| CTTCCAACCAGCTTCCCAAC+TGG | 0.403156 | 3_3:+7801238 | None:intergenic |
| AGTAGGAATTAGTATCGTAT+TGG | 0.409412 | 3_3:-7800262 | Msa0440480:three_prime_UTR |
| GCATCTCCGTCGGGGTGGTT+AGG | 0.409454 | 3_3:-7801408 | Msa0440480:CDS |
| GGAAGTTCTCAACAGTTTGC+GGG | 0.417261 | 3_3:+7801185 | None:intergenic |
| TTCTTTGTTTCTTGCTGCTG+AGG | 0.427286 | 3_3:-7800398 | Msa0440480:three_prime_UTR |
| AAAGTGAGGGCTGTGGAAAA+TGG | 0.427415 | 3_3:-7801337 | Msa0440480:CDS |
| GTATTCTTTGATGTTAGTAT+TGG | 0.430298 | 3_3:-7801265 | Msa0440480:CDS |
| AACTGACTCCCATTGGTGTT+GGG | 0.430322 | 3_3:+7800700 | None:intergenic |
| GGTGGTTAGGTCCCGAGGTG+TGG | 0.434983 | 3_3:-7801395 | Msa0440480:CDS |
| AGGATTGTGATAGGACTCTT+TGG | 0.436041 | 3_3:-7801217 | Msa0440480:CDS |
| GCCCTTCTCACTGGTGGAAA+GGG | 0.436297 | 3_3:+7801159 | None:intergenic |
| GTAGGAATTAGTATCGTATT+GGG | 0.442760 | 3_3:-7800261 | Msa0440480:three_prime_UTR |
| GTGGTTAGGTCCCGAGGTGT+GGG | 0.453738 | 3_3:-7801394 | Msa0440480:CDS |
| TGGAAATCCAGTTGGGAAGC+TGG | 0.456366 | 3_3:-7801245 | Msa0440480:CDS |
| TGCCCTTTCCACCAGTGAGA+AGG | 0.468665 | 3_3:-7801161 | Msa0440480:CDS |
| CTAAAAGAAGCATCTCCGTC+GGG | 0.471283 | 3_3:-7801417 | Msa0440480:CDS |
| TGTCCATGCCTTCCAAAACT+TGG | 0.486542 | 3_3:+7800539 | None:intergenic |
| ACTGGAGGCAAAAGTATCTC+TGG | 0.489609 | 3_3:-7800975 | Msa0440480:CDS |
| AGCCCTTCTCACTGGTGGAA+AGG | 0.493291 | 3_3:+7801158 | None:intergenic |
| ATCAAGGACTTCATGATTCA+AGG | 0.494593 | 3_3:-7801103 | Msa0440480:CDS |
| ACATTGGCAGACGCTGTGGC+TGG | 0.505086 | 3_3:-7800584 | Msa0440480:intron |
| GCCCTTTCCACCAGTGAGAA+GGG | 0.506529 | 3_3:-7801160 | Msa0440480:CDS |
| CATGCTAACAGCTCCTGGTC+CGG | 0.506814 | 3_3:+7800735 | None:intergenic |
| ATGCTGGTCCCAACACCAAT+GGG | 0.515041 | 3_3:-7800708 | Msa0440480:CDS |
| CACCTTCCATCGCGTCATCA+AGG | 0.515078 | 3_3:-7801119 | Msa0440480:CDS |
| GTTAGTATTGGAAATCCAGT+TGG | 0.515418 | 3_3:-7801253 | Msa0440480:CDS |
| CCAGTGTCTCATACCGGACC+AGG | 0.515423 | 3_3:-7800748 | Msa0440480:intron |
| TGTTAGGTCGATTGAATCAC+GGG | 0.517014 | 3_3:-7800515 | Msa0440480:CDS |
| AGGTCCTAGTATGAAAATAA+GGG | 0.519396 | 3_3:+7800313 | None:intergenic |
| CCTACTAGAATACAAATAGT+TGG | 0.525592 | 3_3:+7800279 | None:intergenic |
| CTGATTGTCACCTTCTTTAG+GGG | 0.526723 | 3_3:+7800472 | None:intergenic |
| CGGAAGTTCTCAACAGTTTG+CGG | 0.530427 | 3_3:+7801184 | None:intergenic |
| TTTGCCATGCTAACAGCTCC+TGG | 0.534982 | 3_3:+7800730 | None:intergenic |
| GCTGTTAGCATGGCAAATGC+TGG | 0.538859 | 3_3:-7800724 | Msa0440480:CDS |
| TAGTTTCACACCCACACCTC+GGG | 0.541866 | 3_3:+7801384 | None:intergenic |
| AATGCTGGTCCCAACACCAA+TGG | 0.549301 | 3_3:-7800709 | Msa0440480:CDS |
| GCCAAAGCCCTTCTCACTGG+TGG | 0.549951 | 3_3:+7801153 | None:intergenic |
| GTAGCCAAAGCCCTTCTCAC+TGG | 0.550204 | 3_3:+7801150 | None:intergenic |
| CAGTTGGGAAGCTGGTTGGA+AGG | 0.554098 | 3_3:-7801237 | Msa0440480:CDS |
| TTAGTATTGGAAATCCAGTT+GGG | 0.555401 | 3_3:-7801252 | Msa0440480:CDS |
| CTTGATGACGCGATGGAAGG+TGG | 0.555450 | 3_3:+7801120 | None:intergenic |
| CTGGTTGGAAGGATTGTGAT+AGG | 0.560590 | 3_3:-7801226 | Msa0440480:CDS |
| AAACTGACTCCCATTGGTGT+TGG | 0.561474 | 3_3:+7800699 | None:intergenic |
| TGGTGATCGTCCCCTAAAGA+AGG | 0.561937 | 3_3:-7800482 | Msa0440480:CDS |
| AATCCAGTTGGGAAGCTGGT+TGG | 0.562899 | 3_3:-7801241 | Msa0440480:CDS |
| AGACGCTGTGGCTGGATCAG+AGG | 0.565181 | 3_3:-7800576 | Msa0440480:CDS |
| GTCGGGGTGGTTAGGTCCCG+AGG | 0.565995 | 3_3:-7801400 | Msa0440480:CDS |
| TTGAATGCAGCAACAGCCAT+CGG | 0.590024 | 3_3:+7801620 | None:intergenic |
| TTGTTAGGTCGATTGAATCA+CGG | 0.592054 | 3_3:-7800516 | Msa0440480:CDS |
| TCTCACTGGTGGAAAGGGCA+CGG | 0.601235 | 3_3:+7801164 | None:intergenic |
| CGGACCAGGAGCTGTTAGCA+TGG | 0.603520 | 3_3:-7800734 | Msa0440480:CDS |
| CCTAAAAGAAGCATCTCCGT+CGG | 0.606730 | 3_3:-7801418 | Msa0440480:CDS |
| ACAAGTGAAAGTGAGGGCTG+TGG | 0.614839 | 3_3:-7801344 | Msa0440480:CDS |
| CATGACATTGGCAGACGCTG+TGG | 0.616067 | 3_3:-7800588 | Msa0440480:intron |
| CTAGTTTCACACCCACACCT+CGG | 0.617486 | 3_3:+7801383 | None:intergenic |
| TACGACGACAAGTGAAAGTG+AGG | 0.618754 | 3_3:-7801351 | Msa0440480:CDS |
| GTCCTTGATGACGCGATGGA+AGG | 0.624852 | 3_3:+7801117 | None:intergenic |
| TGAAGTCCTTGATGACGCGA+TGG | 0.626809 | 3_3:+7801113 | None:intergenic |
| ATATCTCCAGTGTCTCATAC+CGG | 0.627003 | 3_3:-7800754 | Msa0440480:intron |
| GATGACGCGATGGAAGGTGG+AGG | 0.631465 | 3_3:+7801123 | None:intergenic |
| GTGGGTGTGAAACTAGCAGT+AGG | 0.631670 | 3_3:-7801376 | Msa0440480:CDS |
| TATCTATCGCAGGGAACTGG+AGG | 0.635120 | 3_3:-7800990 | Msa0440480:intron |
| GGAAAATGGTAGTAGTTCAG+AGG | 0.650163 | 3_3:-7801323 | Msa0440480:CDS |
| GAATCACGGGAGACTGATCG+TGG | 0.651487 | 3_3:-7800502 | Msa0440480:CDS |
| TCGGGACCTAACCACCCCGA+CGG | 0.658560 | 3_3:+7801402 | None:intergenic |
| AAGAAGCATCTCCGTCGGGG+TGG | 0.659605 | 3_3:-7801413 | Msa0440480:CDS |
| TCCTAGTATGAAAATAAGGG+AGG | 0.672935 | 3_3:+7800316 | None:intergenic |
| AAGGTGACAATCAGTGACTG+TGG | 0.689468 | 3_3:-7800463 | Msa0440480:CDS |
| TAAAAGAAGCATCTCCGTCG+GGG | 0.693386 | 3_3:-7801416 | Msa0440480:CDS |
| ACGACGACAAGTGAAAGTGA+GGG | 0.705755 | 3_3:-7801350 | Msa0440480:CDS |
| AAGGACTTCATGATTCAAGG+AGG | 0.745105 | 3_3:-7801100 | Msa0440480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCAATTAAATTTAAGTAA+TGG | + | chr3_3:7800359-7800378 | None:intergenic | 15.0% |
| !!! | ATAAGTTGATGAATAAAAAA+AGG | + | chr3_3:7800855-7800874 | None:intergenic | 15.0% |
| !! | CATCAATTAAATTTAAGTAA+TGG | + | chr3_3:7800359-7800378 | None:intergenic | 15.0% |
| !!! | ATAAGTTGATGAATAAAAAA+AGG | + | chr3_3:7800855-7800874 | None:intergenic | 15.0% |
| !! | TATTAATTGATTGATTGTCT+TGG | - | chr3_3:7800392-7800411 | Msa0440480:three_prime_UTR | 20.0% |
| !! | AATAAAATAAACACAGTGAA+GGG | + | chr3_3:7801026-7801045 | None:intergenic | 20.0% |
| !! | AAATAAAATAAACACAGTGA+AGG | + | chr3_3:7801027-7801046 | None:intergenic | 20.0% |
| !!! | AGTTTAGTTTAGTTTAGTTT+AGG | - | chr3_3:7801048-7801067 | Msa0440480:intron | 20.0% |
| !! | TATTAATTGATTGATTGTCT+TGG | - | chr3_3:7800392-7800411 | Msa0440480:three_prime_UTR | 20.0% |
| !! | AATAAAATAAACACAGTGAA+GGG | + | chr3_3:7801026-7801045 | None:intergenic | 20.0% |
| !! | AAATAAAATAAACACAGTGA+AGG | + | chr3_3:7801027-7801046 | None:intergenic | 20.0% |
| !!! | AGTTTAGTTTAGTTTAGTTT+AGG | - | chr3_3:7801048-7801067 | Msa0440480:intron | 20.0% |
| ! | TATATTATCAGTGAGAAAAG+TGG | + | chr3_3:7800300-7800319 | None:intergenic | 25.0% |
| ! | GTATTCTTTGATGTTAGTAT+TGG | - | chr3_3:7800613-7800632 | Msa0440480:intron | 25.0% |
| !! | GTTGATGAATAAAAAAAGGA+AGG | + | chr3_3:7800851-7800870 | None:intergenic | 25.0% |
| ! | ATAAAATAAACACAGTGAAG+GGG | + | chr3_3:7801025-7801044 | None:intergenic | 25.0% |
| ! | ATTCTTCTATTCTCTCTTAT+CGG | - | chr3_3:7801226-7801245 | Msa0440480:CDS | 25.0% |
| !!! | AATAGTTGGTAAAAGTTTGT+AGG | + | chr3_3:7801588-7801607 | None:intergenic | 25.0% |
| ! | TATATTATCAGTGAGAAAAG+TGG | + | chr3_3:7800300-7800319 | None:intergenic | 25.0% |
| ! | GTATTCTTTGATGTTAGTAT+TGG | - | chr3_3:7800613-7800632 | Msa0440480:intron | 25.0% |
| !! | GTTGATGAATAAAAAAAGGA+AGG | + | chr3_3:7800851-7800870 | None:intergenic | 25.0% |
| ! | ATAAAATAAACACAGTGAAG+GGG | + | chr3_3:7801025-7801044 | None:intergenic | 25.0% |
| ! | ATTCTTCTATTCTCTCTTAT+CGG | - | chr3_3:7801226-7801245 | Msa0440480:CDS | 25.0% |
| !!! | AATAGTTGGTAAAAGTTTGT+AGG | + | chr3_3:7801588-7801607 | None:intergenic | 25.0% |
| AATTGATTGATTGTCTTGGT+TGG | - | chr3_3:7800396-7800415 | Msa0440480:three_prime_UTR | 30.0% | |
| ATTGATTGATTGTCTTGGTT+GGG | - | chr3_3:7800397-7800416 | Msa0440480:three_prime_UTR | 30.0% | |
| ! | TTAGTATTGGAAATCCAGTT+GGG | - | chr3_3:7800626-7800645 | Msa0440480:intron | 30.0% |
| TAAAATAAACACAGTGAAGG+GGG | + | chr3_3:7801024-7801043 | None:intergenic | 30.0% | |
| ACTTAATTGTCTCATGACAT+TGG | - | chr3_3:7801278-7801297 | Msa0440480:CDS | 30.0% | |
| AACAAAACATGTCAAGCAAT+TGG | + | chr3_3:7801448-7801467 | None:intergenic | 30.0% | |
| !!! | TGACATGTTTTGTTTTCTCA+TGG | - | chr3_3:7801454-7801473 | Msa0440480:CDS | 30.0% |
| CAAACAAAAAATTGAGAGAG+CGG | + | chr3_3:7801520-7801539 | None:intergenic | 30.0% | |
| AGGTCCTAGTATGAAAATAA+GGG | + | chr3_3:7801568-7801587 | None:intergenic | 30.0% | |
| TAGGTCCTAGTATGAAAATA+AGG | + | chr3_3:7801569-7801588 | None:intergenic | 30.0% | |
| CCTACTAGAATACAAATAGT+TGG | + | chr3_3:7801602-7801621 | None:intergenic | 30.0% | |
| CCAACTATTTGTATTCTAGT+AGG | - | chr3_3:7801599-7801618 | Msa0440480:intron | 30.0% | |
| AGTAGGAATTAGTATCGTAT+TGG | - | chr3_3:7801616-7801635 | Msa0440480:intron | 30.0% | |
| GTAGGAATTAGTATCGTATT+GGG | - | chr3_3:7801617-7801636 | Msa0440480:intron | 30.0% | |
| AATTGATTGATTGTCTTGGT+TGG | - | chr3_3:7800396-7800415 | Msa0440480:three_prime_UTR | 30.0% | |
| ATTGATTGATTGTCTTGGTT+GGG | - | chr3_3:7800397-7800416 | Msa0440480:three_prime_UTR | 30.0% | |
| ! | TTAGTATTGGAAATCCAGTT+GGG | - | chr3_3:7800626-7800645 | Msa0440480:intron | 30.0% |
| TAAAATAAACACAGTGAAGG+GGG | + | chr3_3:7801024-7801043 | None:intergenic | 30.0% | |
| ACTTAATTGTCTCATGACAT+TGG | - | chr3_3:7801278-7801297 | Msa0440480:CDS | 30.0% | |
| AACAAAACATGTCAAGCAAT+TGG | + | chr3_3:7801448-7801467 | None:intergenic | 30.0% | |
| !!! | TGACATGTTTTGTTTTCTCA+TGG | - | chr3_3:7801454-7801473 | Msa0440480:CDS | 30.0% |
| CAAACAAAAAATTGAGAGAG+CGG | + | chr3_3:7801520-7801539 | None:intergenic | 30.0% | |
| AGGTCCTAGTATGAAAATAA+GGG | + | chr3_3:7801568-7801587 | None:intergenic | 30.0% | |
| TAGGTCCTAGTATGAAAATA+AGG | + | chr3_3:7801569-7801588 | None:intergenic | 30.0% | |
| CCTACTAGAATACAAATAGT+TGG | + | chr3_3:7801602-7801621 | None:intergenic | 30.0% | |
| CCAACTATTTGTATTCTAGT+AGG | - | chr3_3:7801599-7801618 | Msa0440480:intron | 30.0% | |
| AGTAGGAATTAGTATCGTAT+TGG | - | chr3_3:7801616-7801635 | Msa0440480:intron | 30.0% | |
| ATTATCAGTGAGAAAAGTGG+CGG | + | chr3_3:7800297-7800316 | None:intergenic | 35.0% | |
| !!! | CTTCTTTTAGGGTTAGGATT+AGG | + | chr3_3:7800451-7800470 | None:intergenic | 35.0% |
| ! | GTTAGTATTGGAAATCCAGT+TGG | - | chr3_3:7800625-7800644 | Msa0440480:intron | 35.0% |
| ATCAAGGACTTCATGATTCA+AGG | - | chr3_3:7800775-7800794 | Msa0440480:intron | 35.0% | |
| TCTATCTATCTATCTATCGC+AGG | - | chr3_3:7800878-7800897 | Msa0440480:intron | 35.0% | |
| CTATCTATCTATCTATCGCA+GGG | - | chr3_3:7800879-7800898 | Msa0440480:intron | 35.0% | |
| ! | TATGAAAAACTGACTCCCAT+TGG | + | chr3_3:7801188-7801207 | None:intergenic | 35.0% |
| ! | TGTTGTATTTGGCCAAGTTT+TGG | - | chr3_3:7801327-7801346 | Msa0440480:CDS | 35.0% |
| TTGTTAGGTCGATTGAATCA+CGG | - | chr3_3:7801362-7801381 | Msa0440480:CDS | 35.0% | |
| ACTGATTGTCACCTTCTTTA+GGG | + | chr3_3:7801410-7801429 | None:intergenic | 35.0% | |
| !!! | ACCTCCCTTATTTTCATACT+AGG | - | chr3_3:7801561-7801580 | Msa0440480:intron | 35.0% |
| TCCTAGTATGAAAATAAGGG+AGG | + | chr3_3:7801565-7801584 | None:intergenic | 35.0% | |
| ATTATCAGTGAGAAAAGTGG+CGG | + | chr3_3:7800297-7800316 | None:intergenic | 35.0% | |
| !!! | CTTCTTTTAGGGTTAGGATT+AGG | + | chr3_3:7800451-7800470 | None:intergenic | 35.0% |
| ! | GTTAGTATTGGAAATCCAGT+TGG | - | chr3_3:7800625-7800644 | Msa0440480:intron | 35.0% |
| ATCAAGGACTTCATGATTCA+AGG | - | chr3_3:7800775-7800794 | Msa0440480:intron | 35.0% | |
| TCTATCTATCTATCTATCGC+AGG | - | chr3_3:7800878-7800897 | Msa0440480:intron | 35.0% | |
| CTATCTATCTATCTATCGCA+GGG | - | chr3_3:7800879-7800898 | Msa0440480:intron | 35.0% | |
| ! | TATGAAAAACTGACTCCCAT+TGG | + | chr3_3:7801188-7801207 | None:intergenic | 35.0% |
| ! | TGTTGTATTTGGCCAAGTTT+TGG | - | chr3_3:7801327-7801346 | Msa0440480:CDS | 35.0% |
| TTGTTAGGTCGATTGAATCA+CGG | - | chr3_3:7801362-7801381 | Msa0440480:CDS | 35.0% | |
| ACTGATTGTCACCTTCTTTA+GGG | + | chr3_3:7801410-7801429 | None:intergenic | 35.0% | |
| !!! | ACCTCCCTTATTTTCATACT+AGG | - | chr3_3:7801561-7801580 | Msa0440480:intron | 35.0% |
| TCCTAGTATGAAAATAAGGG+AGG | + | chr3_3:7801565-7801584 | None:intergenic | 35.0% | |
| !!! | GAGATGCTTCTTTTAGGGTT+AGG | + | chr3_3:7800457-7800476 | None:intergenic | 40.0% |
| GGAAAATGGTAGTAGTTCAG+AGG | - | chr3_3:7800555-7800574 | Msa0440480:CDS | 40.0% | |
| AGGATTGTGATAGGACTCTT+TGG | - | chr3_3:7800661-7800680 | Msa0440480:intron | 40.0% | |
| AAGGACTTCATGATTCAAGG+AGG | - | chr3_3:7800778-7800797 | Msa0440480:intron | 40.0% | |
| CAAGGAGGAGACTTTGATAA+AGG | - | chr3_3:7800793-7800812 | Msa0440480:intron | 40.0% | |
| ATATCTCCAGTGTCTCATAC+CGG | - | chr3_3:7801124-7801143 | Msa0440480:CDS | 40.0% | |
| ! | GTTTTTCATATGCGCTGTCA+AGG | - | chr3_3:7801198-7801217 | Msa0440480:CDS | 40.0% |
| ! | GATCAGAGGCATGTTGTATT+TGG | - | chr3_3:7801316-7801335 | Msa0440480:CDS | 40.0% |
| !!! | GTATTTGGCCAAGTTTTGGA+AGG | - | chr3_3:7801331-7801350 | Msa0440480:CDS | 40.0% |
| TGTTAGGTCGATTGAATCAC+GGG | - | chr3_3:7801363-7801382 | Msa0440480:CDS | 40.0% | |
| CTGATTGTCACCTTCTTTAG+GGG | + | chr3_3:7801409-7801428 | None:intergenic | 40.0% | |
| ! | CACTGATTGTCACCTTCTTT+AGG | + | chr3_3:7801411-7801430 | None:intergenic | 40.0% |
| ! | TTCTTTGTTTCTTGCTGCTG+AGG | - | chr3_3:7801480-7801499 | Msa0440480:intron | 40.0% |
| !!! | GAGATGCTTCTTTTAGGGTT+AGG | + | chr3_3:7800457-7800476 | None:intergenic | 40.0% |
| GGAAAATGGTAGTAGTTCAG+AGG | - | chr3_3:7800555-7800574 | Msa0440480:CDS | 40.0% | |
| AGGATTGTGATAGGACTCTT+TGG | - | chr3_3:7800661-7800680 | Msa0440480:intron | 40.0% | |
| AAGGACTTCATGATTCAAGG+AGG | - | chr3_3:7800778-7800797 | Msa0440480:intron | 40.0% | |
| CAAGGAGGAGACTTTGATAA+AGG | - | chr3_3:7800793-7800812 | Msa0440480:intron | 40.0% | |
| ATATCTCCAGTGTCTCATAC+CGG | - | chr3_3:7801124-7801143 | Msa0440480:CDS | 40.0% | |
| ! | GTTTTTCATATGCGCTGTCA+AGG | - | chr3_3:7801198-7801217 | Msa0440480:CDS | 40.0% |
| ! | GATCAGAGGCATGTTGTATT+TGG | - | chr3_3:7801316-7801335 | Msa0440480:CDS | 40.0% |
| !!! | GTATTTGGCCAAGTTTTGGA+AGG | - | chr3_3:7801331-7801350 | Msa0440480:CDS | 40.0% |
| TGTTAGGTCGATTGAATCAC+GGG | - | chr3_3:7801363-7801382 | Msa0440480:CDS | 40.0% | |
| CTGATTGTCACCTTCTTTAG+GGG | + | chr3_3:7801409-7801428 | None:intergenic | 40.0% | |
| ! | CACTGATTGTCACCTTCTTT+AGG | + | chr3_3:7801411-7801430 | None:intergenic | 40.0% |
| ! | TTCTTTGTTTCTTGCTGCTG+AGG | - | chr3_3:7801480-7801499 | Msa0440480:intron | 40.0% |
| GATTGATTGTCTTGGTTGGG+TGG | - | chr3_3:7800400-7800419 | Msa0440480:three_prime_UTR | 45.0% | |
| ! | CGACGGAGATGCTTCTTTTA+GGG | + | chr3_3:7800462-7800481 | None:intergenic | 45.0% |
| !! | CCTAAAAGAAGCATCTCCGT+CGG | - | chr3_3:7800460-7800479 | Msa0440480:CDS | 45.0% |
| !! | CTAAAAGAAGCATCTCCGTC+GGG | - | chr3_3:7800461-7800480 | Msa0440480:CDS | 45.0% |
| !! | TAAAAGAAGCATCTCCGTCG+GGG | - | chr3_3:7800462-7800481 | Msa0440480:CDS | 45.0% |
| TACGACGACAAGTGAAAGTG+AGG | - | chr3_3:7800527-7800546 | Msa0440480:CDS | 45.0% | |
| ACGACGACAAGTGAAAGTGA+GGG | - | chr3_3:7800528-7800547 | Msa0440480:CDS | 45.0% | |
| AAAGTGAGGGCTGTGGAAAA+TGG | - | chr3_3:7800541-7800560 | Msa0440480:CDS | 45.0% | |
| CTGGTTGGAAGGATTGTGAT+AGG | - | chr3_3:7800652-7800671 | Msa0440480:intron | 45.0% | |
| GGAAGTTCTCAACAGTTTGC+GGG | + | chr3_3:7800696-7800715 | None:intergenic | 45.0% | |
| CGGAAGTTCTCAACAGTTTG+CGG | + | chr3_3:7800697-7800716 | None:intergenic | 45.0% | |
| ATCTATCTATCGCAGGGAAC+TGG | - | chr3_3:7800885-7800904 | Msa0440480:intron | 45.0% | |
| !! | ACTGGAGGCAAAAGTATCTC+TGG | - | chr3_3:7800903-7800922 | Msa0440480:intron | 45.0% |
| ! | AACTGACTCCCATTGGTGTT+GGG | + | chr3_3:7801181-7801200 | None:intergenic | 45.0% |
| ! | AAACTGACTCCCATTGGTGT+TGG | + | chr3_3:7801182-7801201 | None:intergenic | 45.0% |
| TGTCCATGCCTTCCAAAACT+TGG | + | chr3_3:7801342-7801361 | None:intergenic | 45.0% | |
| ! | TGGAAGGCATGGACATTGTT+AGG | - | chr3_3:7801347-7801366 | Msa0440480:CDS | 45.0% |
| AAGGTGACAATCAGTGACTG+TGG | - | chr3_3:7801415-7801434 | Msa0440480:CDS | 45.0% | |
| GATTGATTGTCTTGGTTGGG+TGG | - | chr3_3:7800400-7800419 | Msa0440480:three_prime_UTR | 45.0% | |
| ! | CGACGGAGATGCTTCTTTTA+GGG | + | chr3_3:7800462-7800481 | None:intergenic | 45.0% |
| !! | CCTAAAAGAAGCATCTCCGT+CGG | - | chr3_3:7800460-7800479 | Msa0440480:CDS | 45.0% |
| !! | CTAAAAGAAGCATCTCCGTC+GGG | - | chr3_3:7800461-7800480 | Msa0440480:CDS | 45.0% |
| !! | TAAAAGAAGCATCTCCGTCG+GGG | - | chr3_3:7800462-7800481 | Msa0440480:CDS | 45.0% |
| TACGACGACAAGTGAAAGTG+AGG | - | chr3_3:7800527-7800546 | Msa0440480:CDS | 45.0% | |
| ACGACGACAAGTGAAAGTGA+GGG | - | chr3_3:7800528-7800547 | Msa0440480:CDS | 45.0% | |
| AAAGTGAGGGCTGTGGAAAA+TGG | - | chr3_3:7800541-7800560 | Msa0440480:CDS | 45.0% | |
| CTGGTTGGAAGGATTGTGAT+AGG | - | chr3_3:7800652-7800671 | Msa0440480:intron | 45.0% | |
| GGAAGTTCTCAACAGTTTGC+GGG | + | chr3_3:7800696-7800715 | None:intergenic | 45.0% | |
| CGGAAGTTCTCAACAGTTTG+CGG | + | chr3_3:7800697-7800716 | None:intergenic | 45.0% | |
| ATCTATCTATCGCAGGGAAC+TGG | - | chr3_3:7800885-7800904 | Msa0440480:intron | 45.0% | |
| !! | ACTGGAGGCAAAAGTATCTC+TGG | - | chr3_3:7800903-7800922 | Msa0440480:intron | 45.0% |
| ! | AACTGACTCCCATTGGTGTT+GGG | + | chr3_3:7801181-7801200 | None:intergenic | 45.0% |
| ! | AAACTGACTCCCATTGGTGT+TGG | + | chr3_3:7801182-7801201 | None:intergenic | 45.0% |
| TGTCCATGCCTTCCAAAACT+TGG | + | chr3_3:7801342-7801361 | None:intergenic | 45.0% | |
| ! | TGGAAGGCATGGACATTGTT+AGG | - | chr3_3:7801347-7801366 | Msa0440480:CDS | 45.0% |
| AAGGTGACAATCAGTGACTG+TGG | - | chr3_3:7801415-7801434 | Msa0440480:CDS | 45.0% | |
| ! | CCGACGGAGATGCTTCTTTT+AGG | + | chr3_3:7800463-7800482 | None:intergenic | 50.0% |
| TAGTTTCACACCCACACCTC+GGG | + | chr3_3:7800497-7800516 | None:intergenic | 50.0% | |
| CTAGTTTCACACCCACACCT+CGG | + | chr3_3:7800498-7800517 | None:intergenic | 50.0% | |
| GTGGGTGTGAAACTAGCAGT+AGG | - | chr3_3:7800502-7800521 | Msa0440480:CDS | 50.0% | |
| ACAAGTGAAAGTGAGGGCTG+TGG | - | chr3_3:7800534-7800553 | Msa0440480:CDS | 50.0% | |
| TGGAAATCCAGTTGGGAAGC+TGG | - | chr3_3:7800633-7800652 | Msa0440480:intron | 50.0% | |
| AATCCAGTTGGGAAGCTGGT+TGG | - | chr3_3:7800637-7800656 | Msa0440480:intron | 50.0% | |
| !! | TGAAGTCCTTGATGACGCGA+TGG | + | chr3_3:7800768-7800787 | None:intergenic | 50.0% |
| TATCTATCGCAGGGAACTGG+AGG | - | chr3_3:7800888-7800907 | Msa0440480:intron | 50.0% | |
| TTTGCCATGCTAACAGCTCC+TGG | + | chr3_3:7801151-7801170 | None:intergenic | 50.0% | |
| GCTGTTAGCATGGCAAATGC+TGG | - | chr3_3:7801154-7801173 | Msa0440480:CDS | 50.0% | |
| AATGCTGGTCCCAACACCAA+TGG | - | chr3_3:7801169-7801188 | Msa0440480:CDS | 50.0% | |
| ATGCTGGTCCCAACACCAAT+GGG | - | chr3_3:7801170-7801189 | Msa0440480:CDS | 50.0% | |
| !!! | TGGCCAAGTTTTGGAAGGCA+TGG | - | chr3_3:7801336-7801355 | Msa0440480:CDS | 50.0% |
| TGGTGATCGTCCCCTAAAGA+AGG | - | chr3_3:7801396-7801415 | Msa0440480:CDS | 50.0% | |
| ! | CCGACGGAGATGCTTCTTTT+AGG | + | chr3_3:7800463-7800482 | None:intergenic | 50.0% |
| TAGTTTCACACCCACACCTC+GGG | + | chr3_3:7800497-7800516 | None:intergenic | 50.0% | |
| CTAGTTTCACACCCACACCT+CGG | + | chr3_3:7800498-7800517 | None:intergenic | 50.0% | |
| GTGGGTGTGAAACTAGCAGT+AGG | - | chr3_3:7800502-7800521 | Msa0440480:CDS | 50.0% | |
| ACAAGTGAAAGTGAGGGCTG+TGG | - | chr3_3:7800534-7800553 | Msa0440480:CDS | 50.0% | |
| TGGAAATCCAGTTGGGAAGC+TGG | - | chr3_3:7800633-7800652 | Msa0440480:intron | 50.0% | |
| AATCCAGTTGGGAAGCTGGT+TGG | - | chr3_3:7800637-7800656 | Msa0440480:intron | 50.0% | |
| !! | TGAAGTCCTTGATGACGCGA+TGG | + | chr3_3:7800768-7800787 | None:intergenic | 50.0% |
| TATCTATCGCAGGGAACTGG+AGG | - | chr3_3:7800888-7800907 | Msa0440480:intron | 50.0% | |
| TTTGCCATGCTAACAGCTCC+TGG | + | chr3_3:7801151-7801170 | None:intergenic | 50.0% | |
| GCTGTTAGCATGGCAAATGC+TGG | - | chr3_3:7801154-7801173 | Msa0440480:CDS | 50.0% | |
| AATGCTGGTCCCAACACCAA+TGG | - | chr3_3:7801169-7801188 | Msa0440480:CDS | 50.0% | |
| ATGCTGGTCCCAACACCAAT+GGG | - | chr3_3:7801170-7801189 | Msa0440480:CDS | 50.0% | |
| !!! | TGGCCAAGTTTTGGAAGGCA+TGG | - | chr3_3:7801336-7801355 | Msa0440480:CDS | 50.0% |
| TGGTGATCGTCCCCTAAAGA+AGG | - | chr3_3:7801396-7801415 | Msa0440480:CDS | 50.0% | |
| CTTCCAACCAGCTTCCCAAC+TGG | + | chr3_3:7800643-7800662 | None:intergenic | 55.0% | |
| CAGTTGGGAAGCTGGTTGGA+AGG | - | chr3_3:7800641-7800660 | Msa0440480:intron | 55.0% | |
| TCTCACTGGTGGAAAGGGCA+CGG | + | chr3_3:7800717-7800736 | None:intergenic | 55.0% | |
| TGCCCTTTCCACCAGTGAGA+AGG | - | chr3_3:7800717-7800736 | Msa0440480:CDS | 55.0% | |
| GCCCTTTCCACCAGTGAGAA+GGG | - | chr3_3:7800718-7800737 | Msa0440480:CDS | 55.0% | |
| GCCCTTCTCACTGGTGGAAA+GGG | + | chr3_3:7800722-7800741 | None:intergenic | 55.0% | |
| AGCCCTTCTCACTGGTGGAA+AGG | + | chr3_3:7800723-7800742 | None:intergenic | 55.0% | |
| TCCACCAGTGAGAAGGGCTT+TGG | - | chr3_3:7800724-7800743 | Msa0440480:CDS | 55.0% | |
| GTAGCCAAAGCCCTTCTCAC+TGG | + | chr3_3:7800731-7800750 | None:intergenic | 55.0% | |
| !! | CTTGATGACGCGATGGAAGG+TGG | + | chr3_3:7800761-7800780 | None:intergenic | 55.0% |
| CACCTTCCATCGCGTCATCA+AGG | - | chr3_3:7800759-7800778 | Msa0440480:intron | 55.0% | |
| !! | GTCCTTGATGACGCGATGGA+AGG | + | chr3_3:7800764-7800783 | None:intergenic | 55.0% |
| CATGCTAACAGCTCCTGGTC+CGG | + | chr3_3:7801146-7801165 | None:intergenic | 55.0% | |
| CATGACATTGGCAGACGCTG+TGG | - | chr3_3:7801290-7801309 | Msa0440480:CDS | 55.0% | |
| GAATCACGGGAGACTGATCG+TGG | - | chr3_3:7801376-7801395 | Msa0440480:CDS | 55.0% | |
| CTTCCAACCAGCTTCCCAAC+TGG | + | chr3_3:7800643-7800662 | None:intergenic | 55.0% | |
| CAGTTGGGAAGCTGGTTGGA+AGG | - | chr3_3:7800641-7800660 | Msa0440480:intron | 55.0% | |
| TCTCACTGGTGGAAAGGGCA+CGG | + | chr3_3:7800717-7800736 | None:intergenic | 55.0% | |
| TGCCCTTTCCACCAGTGAGA+AGG | - | chr3_3:7800717-7800736 | Msa0440480:CDS | 55.0% | |
| GCCCTTTCCACCAGTGAGAA+GGG | - | chr3_3:7800718-7800737 | Msa0440480:CDS | 55.0% | |
| GCCCTTCTCACTGGTGGAAA+GGG | + | chr3_3:7800722-7800741 | None:intergenic | 55.0% | |
| AGCCCTTCTCACTGGTGGAA+AGG | + | chr3_3:7800723-7800742 | None:intergenic | 55.0% | |
| TCCACCAGTGAGAAGGGCTT+TGG | - | chr3_3:7800724-7800743 | Msa0440480:CDS | 55.0% | |
| GTAGCCAAAGCCCTTCTCAC+TGG | + | chr3_3:7800731-7800750 | None:intergenic | 55.0% | |
| !! | CTTGATGACGCGATGGAAGG+TGG | + | chr3_3:7800761-7800780 | None:intergenic | 55.0% |
| CACCTTCCATCGCGTCATCA+AGG | - | chr3_3:7800759-7800778 | Msa0440480:intron | 55.0% | |
| !! | GTCCTTGATGACGCGATGGA+AGG | + | chr3_3:7800764-7800783 | None:intergenic | 55.0% |
| CATGCTAACAGCTCCTGGTC+CGG | + | chr3_3:7801146-7801165 | None:intergenic | 55.0% | |
| CATGACATTGGCAGACGCTG+TGG | - | chr3_3:7801290-7801309 | Msa0440480:CDS | 55.0% | |
| GAATCACGGGAGACTGATCG+TGG | - | chr3_3:7801376-7801395 | Msa0440480:CDS | 55.0% | |
| !! | AAGAAGCATCTCCGTCGGGG+TGG | - | chr3_3:7800465-7800484 | Msa0440480:CDS | 60.0% |
| GTGGTTAGGTCCCGAGGTGT+GGG | - | chr3_3:7800484-7800503 | Msa0440480:CDS | 60.0% | |
| GCCAAAGCCCTTCTCACTGG+TGG | + | chr3_3:7800728-7800747 | None:intergenic | 60.0% | |
| GATGACGCGATGGAAGGTGG+AGG | + | chr3_3:7800758-7800777 | None:intergenic | 60.0% | |
| CCTGGTCCGGTATGAGACAC+TGG | + | chr3_3:7801133-7801152 | None:intergenic | 60.0% | |
| CCAGTGTCTCATACCGGACC+AGG | - | chr3_3:7801130-7801149 | Msa0440480:CDS | 60.0% | |
| CGGACCAGGAGCTGTTAGCA+TGG | - | chr3_3:7801144-7801163 | Msa0440480:CDS | 60.0% | |
| ACATTGGCAGACGCTGTGGC+TGG | - | chr3_3:7801294-7801313 | Msa0440480:CDS | 60.0% | |
| AGACGCTGTGGCTGGATCAG+AGG | - | chr3_3:7801302-7801321 | Msa0440480:CDS | 60.0% | |
| !! | AAGAAGCATCTCCGTCGGGG+TGG | - | chr3_3:7800465-7800484 | Msa0440480:CDS | 60.0% |
| GTGGTTAGGTCCCGAGGTGT+GGG | - | chr3_3:7800484-7800503 | Msa0440480:CDS | 60.0% | |
| GCCAAAGCCCTTCTCACTGG+TGG | + | chr3_3:7800728-7800747 | None:intergenic | 60.0% | |
| GATGACGCGATGGAAGGTGG+AGG | + | chr3_3:7800758-7800777 | None:intergenic | 60.0% | |
| CCTGGTCCGGTATGAGACAC+TGG | + | chr3_3:7801133-7801152 | None:intergenic | 60.0% | |
| CCAGTGTCTCATACCGGACC+AGG | - | chr3_3:7801130-7801149 | Msa0440480:CDS | 60.0% | |
| CGGACCAGGAGCTGTTAGCA+TGG | - | chr3_3:7801144-7801163 | Msa0440480:CDS | 60.0% | |
| ACATTGGCAGACGCTGTGGC+TGG | - | chr3_3:7801294-7801313 | Msa0440480:CDS | 60.0% | |
| AGACGCTGTGGCTGGATCAG+AGG | - | chr3_3:7801302-7801321 | Msa0440480:CDS | 60.0% | |
| GCATCTCCGTCGGGGTGGTT+AGG | - | chr3_3:7800470-7800489 | Msa0440480:CDS | 65.0% | |
| TCGGGACCTAACCACCCCGA+CGG | + | chr3_3:7800479-7800498 | None:intergenic | 65.0% | |
| GGTGGTTAGGTCCCGAGGTG+TGG | - | chr3_3:7800483-7800502 | Msa0440480:CDS | 65.0% | |
| GCATCTCCGTCGGGGTGGTT+AGG | - | chr3_3:7800470-7800489 | Msa0440480:CDS | 65.0% | |
| TCGGGACCTAACCACCCCGA+CGG | + | chr3_3:7800479-7800498 | None:intergenic | 65.0% | |
| GGTGGTTAGGTCCCGAGGTG+TGG | - | chr3_3:7800483-7800502 | Msa0440480:CDS | 65.0% | |
| GTCGGGGTGGTTAGGTCCCG+AGG | - | chr3_3:7800478-7800497 | Msa0440480:CDS | 70.0% | |
| GTCGGGGTGGTTAGGTCCCG+AGG | - | chr3_3:7800478-7800497 | Msa0440480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 7800261 | 7801639 | 7800261 | ID=Msa0440480;Name=Msa0440480 |
| chr3_3 | mRNA | 7800261 | 7801639 | 7800261 | ID=Msa0440480-mRNA-1;Parent=Msa0440480;Name=Msa0440480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|1|1|1|5|183|235 |
| chr3_3 | exon | 7800261 | 7800596 | 7800261 | ID=Msa0440480-mRNA-1:exon:1670;Parent=Msa0440480-mRNA-1 |
| chr3_3 | exon | 7800681 | 7800766 | 7800681 | ID=Msa0440480-mRNA-1:exon:1669;Parent=Msa0440480-mRNA-1 |
| chr3_3 | exon | 7800946 | 7801000 | 7800946 | ID=Msa0440480-mRNA-1:exon:1668;Parent=Msa0440480-mRNA-1 |
| chr3_3 | exon | 7801081 | 7801473 | 7801081 | ID=Msa0440480-mRNA-1:exon:1667;Parent=Msa0440480-mRNA-1 |
| chr3_3 | exon | 7801619 | 7801639 | 7801619 | ID=Msa0440480-mRNA-1:exon:1666;Parent=Msa0440480-mRNA-1 |
| chr3_3 | CDS | 7801619 | 7801639 | 7801619 | ID=Msa0440480-mRNA-1:cds;Parent=Msa0440480-mRNA-1 |
| chr3_3 | CDS | 7801081 | 7801473 | 7801081 | ID=Msa0440480-mRNA-1:cds;Parent=Msa0440480-mRNA-1 |
| chr3_3 | CDS | 7800946 | 7801000 | 7800946 | ID=Msa0440480-mRNA-1:cds;Parent=Msa0440480-mRNA-1 |
| chr3_3 | CDS | 7800681 | 7800766 | 7800681 | ID=Msa0440480-mRNA-1:cds;Parent=Msa0440480-mRNA-1 |
| chr3_3 | CDS | 7800444 | 7800596 | 7800444 | ID=Msa0440480-mRNA-1:cds;Parent=Msa0440480-mRNA-1 |
| chr3_3 | three_prime_UTR | 7800261 | 7800443 | 7800261 | ID=Msa0440480-mRNA-1:three_prime_utr;Parent=Msa0440480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
