AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462510 MtrunA17_Chr1g0213971 92.576 229 11 2 2 226 18 244 7.21e-150 416
Msa1462510 MtrunA17_Chr1g0193711 63.978 186 63 2 41 225 67 249 3.82e-83 248
Msa1462510 MtrunA17_Chr7g0270991 63.492 189 64 2 37 225 76 259 5.58e-83 248
Msa1462510 MtrunA17_Chr3g0104751 60.989 182 60 3 51 225 26 203 5.13e-71 215
Msa1462510 MtrunA17_Chr3g0145501 59.649 171 58 3 60 223 13 179 6.32e-66 202
Msa1462510 MtrunA17_Chr3g0113441 60.345 174 58 3 57 223 62 231 7.18e-65 201
Msa1462510 MtrunA17_Chr7g0274841 57.895 171 61 3 60 223 5 171 1.79e-64 197
Msa1462510 MtrunA17_Chr4g0038431 59.195 174 60 3 57 223 2 171 2.36e-64 197
Msa1462510 MtrunA17_Chr8g0374621 55.814 172 65 2 60 223 5 173 5.23e-58 187
Msa1462510 MtrunA17_Chr8g0353571 54.438 169 68 3 61 223 20 185 2.67e-56 177
Msa1462510 MtrunA17_Chr4g0037281 50.829 181 80 2 51 224 38 216 2.89e-56 178
Msa1462510 MtrunA17_Chr4g0045321 53.757 173 69 2 60 224 5 174 4.04e-56 182
Msa1462510 MtrunA17_Chr7g0260441 55.172 174 66 3 61 226 9 178 1.27e-53 182
Msa1462510 MtrunA17_Chr2g0321111 52.778 144 63 3 75 217 470 609 1.52e-40 146
Msa1462510 MtrunA17_Chr7g0266721 47.917 144 70 4 75 217 18 157 8.19e-37 127
Msa1462510 MtrunA17_Chr3g0138061 44.444 171 83 3 61 223 12 178 4.11e-35 131
Msa1462510 MtrunA17_Chr8g0351571 47.945 146 69 4 75 218 9 149 4.98e-34 119
Msa1462510 MtrunA17_Chr1g0149061 46.000 150 67 4 61 201 9 153 2.23e-31 120
Msa1462510 MtrunA17_Chr3g0122871 53.333 120 28 3 119 211 1 119 6.47e-31 110
Msa1462510 MtrunA17_Chr5g0401141 46.528 144 72 4 76 218 354 493 7.53e-31 119
Msa1462510 MtrunA17_Chr6g0484281 39.474 152 79 5 75 217 9 156 7.17e-20 87.8
Msa1462510 MtrunA17_Chr2g0288371 42.143 140 74 6 76 212 22 157 1.14e-19 87.0
Msa1462510 MtrunA17_Chr8g0357591 38.816 152 80 5 75 217 9 156 1.40e-18 84.0
Msa1462510 MtrunA17_Chr2g0305071 29.293 198 95 8 74 226 90 287 3.59e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462510 AT5G13120.2 78.977 176 37 0 51 226 78 253 3.10e-107 309
Msa1462510 AT5G13120.1 78.977 176 37 0 51 226 82 257 4.53e-107 309
Msa1462510 AT3G62030.1 66.129 186 60 1 40 225 76 258 7.70e-86 255
Msa1462510 AT3G62030.2 66.129 186 60 1 40 225 129 311 4.20e-85 255
Msa1462510 AT3G62030.3 68.391 174 52 1 52 225 87 257 8.88e-85 253
Msa1462510 AT5G58710.1 58.201 189 68 3 44 225 20 204 1.77e-70 214
Msa1462510 AT2G29960.1 58.201 189 68 3 44 225 17 201 2.71e-70 214
Msa1462510 AT2G29960.3 58.201 189 68 3 44 225 17 201 2.71e-70 214
Msa1462510 AT2G21130.1 60.819 171 56 3 60 223 6 172 6.12e-68 207
Msa1462510 AT2G16600.1 60.234 171 57 3 60 223 6 172 7.14e-67 204
Msa1462510 AT4G38740.1 59.064 171 59 3 60 223 5 171 1.29e-65 201
Msa1462510 AT3G56070.1 57.310 171 62 3 60 223 5 171 5.60e-64 197
Msa1462510 AT3G56070.2 57.310 171 62 3 60 223 5 171 5.60e-64 197
Msa1462510 AT3G55920.1 56.044 182 67 4 52 225 52 228 1.56e-62 195
Msa1462510 AT2G29960.2 55.026 189 64 4 44 225 17 191 2.28e-62 193
Msa1462510 AT4G34870.1 58.480 171 60 3 60 223 5 171 3.24e-62 192
Msa1462510 AT2G15790.1 56.069 173 65 2 60 224 5 174 1.60e-56 184
Msa1462510 AT2G38730.1 54.438 169 68 3 61 223 34 199 3.61e-56 177
Msa1462510 AT2G16600.2 55.488 164 54 3 60 223 6 150 8.11e-56 175
Msa1462510 AT4G34960.1 49.744 195 83 3 42 224 25 216 4.60e-55 176
Msa1462510 AT3G63400.2 57.647 170 60 3 61 222 9 174 7.91e-54 177
Msa1462510 AT3G63400.3 57.647 170 60 3 61 222 9 174 2.83e-52 177
Msa1462510 AT3G63400.4 57.647 170 60 3 61 222 9 174 2.83e-52 177
Msa1462510 AT3G63400.1 57.647 170 60 3 61 222 9 174 2.83e-52 177
Msa1462510 AT3G44600.1 52.778 144 63 3 75 217 484 623 1.15e-40 147
Msa1462510 AT4G34960.2 50.667 150 59 3 42 179 25 171 2.37e-40 136
Msa1462510 AT2G36130.1 46.528 144 72 4 75 217 18 157 1.32e-37 129
Msa1462510 AT1G01940.1 46.897 145 72 4 75 218 9 149 2.14e-35 123
Msa1462510 AT3G22920.1 44.828 174 75 7 60 223 5 167 5.51e-32 117
Msa1462510 AT5G67530.1 46.154 143 72 4 76 217 353 491 1.77e-31 121
Msa1462510 AT4G32420.1 41.243 177 90 4 56 223 4 175 5.06e-28 111
Msa1462510 AT4G32420.5 41.243 177 90 4 56 223 4 175 5.06e-28 111
Msa1462510 AT4G32420.3 41.243 177 90 4 56 223 4 175 5.06e-28 111
Msa1462510 AT4G32420.6 41.243 177 90 4 56 223 4 175 5.06e-28 111
Msa1462510 AT4G32420.4 41.935 155 77 3 56 201 4 154 3.59e-26 106
Msa1462510 AT1G53720.2 39.474 152 79 5 75 217 9 156 1.03e-22 94.7
Msa1462510 AT4G33060.1 43.262 141 71 7 76 212 22 157 3.48e-22 94.7
Msa1462510 AT1G53720.1 40.132 152 78 5 75 217 9 156 7.59e-22 93.6
Msa1462510 AT2G47320.1 32.653 147 82 6 76 217 87 221 7.87e-11 60.5

Find 82 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTGTCACCTTCTTT+AGG 0.241303 tig0042327:-10951 Msa1462510:intergenic
GATCAGAGGCATGTTGTATT+TGG 0.249985 tig0042327:+10859 Msa1462510:CDS
ACTGATTGTCACCTTCTTTA+GGG 0.273487 tig0042327:-10950 Msa1462510:intergenic
TGGAAGGCATGGACATTGTT+AGG 0.314434 tig0042327:+10890 Msa1462510:CDS
TAGGTCCTAGTATGAAAATA+AGG 0.319359 tig0042327:-11109 Msa1462510:intergenic
CAAGGAGGAGACTTTGATAA+AGG 0.345816 tig0042327:+10336 Msa1462510:CDS
TGTTGTATTTGGCCAAGTTT+TGG 0.352436 tig0042327:+10870 Msa1462510:CDS
AATAGTTGGTAAAAGTTTGT+AGG 0.370817 tig0042327:-11128 Msa1462510:intergenic
TCCACCAGTGAGAAGGGCTT+TGG 0.372862 tig0042327:+10267 Msa1462510:CDS
CCAACTATTTGTATTCTAGT+AGG 0.384001 tig0042327:+11142 Msa1462510:three_prime_UTR
ATCTATCTATCGCAGGGAAC+TGG 0.385423 tig0042327:+10428 Msa1462510:intron
AACAAAACATGTCAAGCAAT+TGG 0.393584 tig0042327:-10988 Msa1462510:intergenic
CTTCCAACCAGCTTCCCAAC+TGG 0.403156 tig0042327:-10183 Msa1462510:intergenic
AGTAGGAATTAGTATCGTAT+TGG 0.409412 tig0042327:+11159 Msa1462510:three_prime_UTR
GCATCTCCGTCGGGGTGGTT+AGG 0.409454 tig0042327:+10013 Msa1462510:CDS
GGAAGTTCTCAACAGTTTGC+GGG 0.417261 tig0042327:-10236 Msa1462510:intergenic
TTCTTTGTTTCTTGCTGCTG+AGG 0.427286 tig0042327:+11023 Msa1462510:three_prime_UTR
AAAGTGAGGGCTGTGGAAAA+TGG 0.427415 tig0042327:+10084 Msa1462510:CDS
GTATTCTTTGATGTTAGTAT+TGG 0.430298 tig0042327:+10156 Msa1462510:CDS
AACTGACTCCCATTGGTGTT+GGG 0.430322 tig0042327:-10721 Msa1462510:intergenic
GGTGGTTAGGTCCCGAGGTG+TGG 0.434983 tig0042327:+10026 Msa1462510:CDS
AGGATTGTGATAGGACTCTT+TGG 0.436041 tig0042327:+10204 Msa1462510:CDS
GCCCTTCTCACTGGTGGAAA+GGG 0.436297 tig0042327:-10262 Msa1462510:intergenic
GTAGGAATTAGTATCGTATT+GGG 0.442760 tig0042327:+11160 Msa1462510:three_prime_UTR
GTGGTTAGGTCCCGAGGTGT+GGG 0.453738 tig0042327:+10027 Msa1462510:CDS
TGGAAATCCAGTTGGGAAGC+TGG 0.456366 tig0042327:+10176 Msa1462510:CDS
TGCCCTTTCCACCAGTGAGA+AGG 0.468665 tig0042327:+10260 Msa1462510:CDS
CTAAAAGAAGCATCTCCGTC+GGG 0.471283 tig0042327:+10004 Msa1462510:CDS
TGTCCATGCCTTCCAAAACT+TGG 0.486542 tig0042327:-10882 Msa1462510:intergenic
ACTGGAGGCAAAAGTATCTC+TGG 0.489609 tig0042327:+10446 Msa1462510:CDS
AGCCCTTCTCACTGGTGGAA+AGG 0.493291 tig0042327:-10263 Msa1462510:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.494593 tig0042327:+10318 Msa1462510:CDS
ACATTGGCAGACGCTGTGGC+TGG 0.505086 tig0042327:+10837 Msa1462510:intron
GCCCTTTCCACCAGTGAGAA+GGG 0.506529 tig0042327:+10261 Msa1462510:CDS
CATGCTAACAGCTCCTGGTC+CGG 0.506814 tig0042327:-10686 Msa1462510:intergenic
ATGCTGGTCCCAACACCAAT+GGG 0.515041 tig0042327:+10713 Msa1462510:CDS
CACCTTCCATCGCGTCATCA+AGG 0.515078 tig0042327:+10302 Msa1462510:CDS
GTTAGTATTGGAAATCCAGT+TGG 0.515418 tig0042327:+10168 Msa1462510:CDS
CCAGTGTCTCATACCGGACC+AGG 0.515423 tig0042327:+10673 Msa1462510:intron
TGTTAGGTCGATTGAATCAC+GGG 0.517014 tig0042327:+10906 Msa1462510:CDS
AGGTCCTAGTATGAAAATAA+GGG 0.519396 tig0042327:-11108 Msa1462510:intergenic
CCTACTAGAATACAAATAGT+TGG 0.525592 tig0042327:-11142 Msa1462510:intergenic
CTGATTGTCACCTTCTTTAG+GGG 0.526723 tig0042327:-10949 Msa1462510:intergenic
CGGAAGTTCTCAACAGTTTG+CGG 0.530427 tig0042327:-10237 Msa1462510:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 tig0042327:-10691 Msa1462510:intergenic
GCTGTTAGCATGGCAAATGC+TGG 0.538859 tig0042327:+10697 Msa1462510:CDS
TAGTTTCACACCCACACCTC+GGG 0.541866 tig0042327:-10037 Msa1462510:intergenic
AATGCTGGTCCCAACACCAA+TGG 0.549301 tig0042327:+10712 Msa1462510:CDS
GCCAAAGCCCTTCTCACTGG+TGG 0.549951 tig0042327:-10268 Msa1462510:intergenic
GTAGCCAAAGCCCTTCTCAC+TGG 0.550204 tig0042327:-10271 Msa1462510:intergenic
CAGTTGGGAAGCTGGTTGGA+AGG 0.554098 tig0042327:+10184 Msa1462510:CDS
TTAGTATTGGAAATCCAGTT+GGG 0.555401 tig0042327:+10169 Msa1462510:CDS
CTTGATGACGCGATGGAAGG+TGG 0.555450 tig0042327:-10301 Msa1462510:intergenic
CTGGTTGGAAGGATTGTGAT+AGG 0.560590 tig0042327:+10195 Msa1462510:CDS
AAACTGACTCCCATTGGTGT+TGG 0.561474 tig0042327:-10722 Msa1462510:intergenic
TGGTGATCGTCCCCTAAAGA+AGG 0.561937 tig0042327:+10939 Msa1462510:CDS
AATCCAGTTGGGAAGCTGGT+TGG 0.562899 tig0042327:+10180 Msa1462510:CDS
AGACGCTGTGGCTGGATCAG+AGG 0.565181 tig0042327:+10845 Msa1462510:intron
GTCGGGGTGGTTAGGTCCCG+AGG 0.565995 tig0042327:+10021 Msa1462510:CDS
TTGTTAGGTCGATTGAATCA+CGG 0.592054 tig0042327:+10905 Msa1462510:CDS
TCTCACTGGTGGAAAGGGCA+CGG 0.601235 tig0042327:-10257 Msa1462510:intergenic
CGGACCAGGAGCTGTTAGCA+TGG 0.603520 tig0042327:+10687 Msa1462510:CDS
CCTAAAAGAAGCATCTCCGT+CGG 0.606730 tig0042327:+10003 Msa1462510:CDS
ACAAGTGAAAGTGAGGGCTG+TGG 0.614839 tig0042327:+10077 Msa1462510:CDS
CATGACATTGGCAGACGCTG+TGG 0.616067 tig0042327:+10833 Msa1462510:intron
CTAGTTTCACACCCACACCT+CGG 0.617486 tig0042327:-10038 Msa1462510:intergenic
TACGACGACAAGTGAAAGTG+AGG 0.618754 tig0042327:+10070 Msa1462510:CDS
GTCCTTGATGACGCGATGGA+AGG 0.624852 tig0042327:-10304 Msa1462510:intergenic
TGAAGTCCTTGATGACGCGA+TGG 0.626809 tig0042327:-10308 Msa1462510:intergenic
ATATCTCCAGTGTCTCATAC+CGG 0.627003 tig0042327:+10667 Msa1462510:intron
GATGACGCGATGGAAGGTGG+AGG 0.631465 tig0042327:-10298 Msa1462510:intergenic
GTGGGTGTGAAACTAGCAGT+AGG 0.631670 tig0042327:+10045 Msa1462510:CDS
TATCTATCGCAGGGAACTGG+AGG 0.635120 tig0042327:+10431 Msa1462510:intron
GGAAAATGGTAGTAGTTCAG+AGG 0.650163 tig0042327:+10098 Msa1462510:CDS
GAATCACGGGAGACTGATCG+TGG 0.651487 tig0042327:+10919 Msa1462510:CDS
TCGGGACCTAACCACCCCGA+CGG 0.658560 tig0042327:-10019 Msa1462510:intergenic
AAGAAGCATCTCCGTCGGGG+TGG 0.659605 tig0042327:+10008 Msa1462510:CDS
TCCTAGTATGAAAATAAGGG+AGG 0.672935 tig0042327:-11105 Msa1462510:intergenic
AAGGTGACAATCAGTGACTG+TGG 0.689468 tig0042327:+10958 Msa1462510:CDS
TAAAAGAAGCATCTCCGTCG+GGG 0.693386 tig0042327:+10005 Msa1462510:CDS
ACGACGACAAGTGAAAGTGA+GGG 0.705755 tig0042327:+10071 Msa1462510:CDS
AAGGACTTCATGATTCAAGG+AGG 0.745105 tig0042327:+10321 Msa1462510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATCATAAACATTTTTTA+AGG - tig0042327:9449-9468 Msa1462510:intergenic 10.0%
!!! AGATTATAATTATCAATTTT+TGG + tig0042327:9709-9728 Msa1462510:intron 10.0%
!!! ATTATCATAAACATTTTTTA+AGG - tig0042327:9449-9468 Msa1462510:intergenic 10.0%
!!! AGATTATAATTATCAATTTT+TGG + tig0042327:9709-9728 Msa1462510:intron 10.0%
!! TCACTGATAATATATATATA+TGG + tig0042327:9281-9300 Msa1462510:intron 15.0%
!! TATATATGGAAAATGATATT+TGG + tig0042327:9295-9314 Msa1462510:intron 15.0%
!! TTATGATAATACATAGAATT+TGG + tig0042327:9459-9478 Msa1462510:intron 15.0%
!!! ATTTAATGTGTATATGTTTT+AGG + tig0042327:9490-9509 Msa1462510:intron 15.0%
!! CAATAATCTATAAAACATAT+GGG - tig0042327:9669-9688 Msa1462510:intergenic 15.0%
!! ACAATAATCTATAAAACATA+TGG - tig0042327:9670-9689 Msa1462510:intergenic 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - tig0042327:9902-9921 Msa1462510:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - tig0042327:10398-10417 Msa1462510:intergenic 15.0%
!! TCACTGATAATATATATATA+TGG + tig0042327:9281-9300 Msa1462510:intron 15.0%
!! TATATATGGAAAATGATATT+TGG + tig0042327:9295-9314 Msa1462510:intron 15.0%
!! TTATGATAATACATAGAATT+TGG + tig0042327:9459-9478 Msa1462510:intron 15.0%
!!! ATTTAATGTGTATATGTTTT+AGG + tig0042327:9490-9509 Msa1462510:intron 15.0%
!! CAATAATCTATAAAACATAT+GGG - tig0042327:9669-9688 Msa1462510:intergenic 15.0%
!! ACAATAATCTATAAAACATA+TGG - tig0042327:9670-9689 Msa1462510:intergenic 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - tig0042327:9902-9921 Msa1462510:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - tig0042327:10398-10417 Msa1462510:intergenic 15.0%
!! TACACTGATATTAGTTAATA+TGG + tig0042327:9419-9438 Msa1462510:intron 20.0%
!!! TATCAATTTTTGGTTTCAAT+TGG + tig0042327:9719-9738 Msa1462510:intron 20.0%
!!! CAAAGAAAATTTTAATGATC+AGG - tig0042327:9750-9769 Msa1462510:intergenic 20.0%
!!! CTGATCATTAAAATTTTCTT+TGG + tig0042327:9748-9767 Msa1462510:intron 20.0%
!!! GTTTTTTATACGAAATATCA+CGG - tig0042327:9837-9856 Msa1462510:intergenic 20.0%
!! TATTAATTGATTGATTGTCT+TGG + tig0042327:9935-9954 Msa1462510:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - tig0042327:10569-10588 Msa1462510:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - tig0042327:10570-10589 Msa1462510:intergenic 20.0%
!!! AGTTTAGTTTAGTTTAGTTT+AGG + tig0042327:10591-10610 Msa1462510:intron 20.0%
!! TACACTGATATTAGTTAATA+TGG + tig0042327:9419-9438 Msa1462510:intron 20.0%
!!! TATCAATTTTTGGTTTCAAT+TGG + tig0042327:9719-9738 Msa1462510:intron 20.0%
!!! CAAAGAAAATTTTAATGATC+AGG - tig0042327:9750-9769 Msa1462510:intergenic 20.0%
!!! CTGATCATTAAAATTTTCTT+TGG + tig0042327:9748-9767 Msa1462510:intron 20.0%
!!! GTTTTTTATACGAAATATCA+CGG - tig0042327:9837-9856 Msa1462510:intergenic 20.0%
!! TATTAATTGATTGATTGTCT+TGG + tig0042327:9935-9954 Msa1462510:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - tig0042327:10569-10588 Msa1462510:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - tig0042327:10570-10589 Msa1462510:intergenic 20.0%
!!! AGTTTAGTTTAGTTTAGTTT+AGG + tig0042327:10591-10610 Msa1462510:intron 20.0%
!!! TTGAGTTGAATAGATAGATT+AGG + tig0042327:9141-9160 Msa1462510:intron 25.0%
! TATATTATCAGTGAGAAAAG+TGG - tig0042327:9275-9294 Msa1462510:intergenic 25.0%
! ATGGAAAATGATATTTGGTA+CGG + tig0042327:9300-9319 Msa1462510:intron 25.0%
! GATTATTGTCACAAATAAAG+TGG + tig0042327:9681-9700 Msa1462510:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + tig0042327:10156-10175 Msa1462510:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - tig0042327:10394-10413 Msa1462510:intergenic 25.0%
! ATAAAATAAACACAGTGAAG+GGG - tig0042327:10568-10587 Msa1462510:intergenic 25.0%
! ATTCTTCTATTCTCTCTTAT+CGG + tig0042327:10769-10788 Msa1462510:intron 25.0%
!!! AATAGTTGGTAAAAGTTTGT+AGG - tig0042327:11131-11150 Msa1462510:intergenic 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + tig0042327:9141-9160 Msa1462510:intron 25.0%
! TATATTATCAGTGAGAAAAG+TGG - tig0042327:9275-9294 Msa1462510:intergenic 25.0%
! ATGGAAAATGATATTTGGTA+CGG + tig0042327:9300-9319 Msa1462510:intron 25.0%
! GATTATTGTCACAAATAAAG+TGG + tig0042327:9681-9700 Msa1462510:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + tig0042327:10156-10175 Msa1462510:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - tig0042327:10394-10413 Msa1462510:intergenic 25.0%
! ATAAAATAAACACAGTGAAG+GGG - tig0042327:10568-10587 Msa1462510:intergenic 25.0%
! ATTCTTCTATTCTCTCTTAT+CGG + tig0042327:10769-10788 Msa1462510:intron 25.0%
!!! AATAGTTGGTAAAAGTTTGT+AGG - tig0042327:11131-11150 Msa1462510:intergenic 25.0%
TGGAAAATGATATTTGGTAC+GGG + tig0042327:9301-9320 Msa1462510:intron 30.0%
GATTTGCATACGAAAATTCA+CGG + tig0042327:9325-9344 Msa1462510:intron 30.0%
! TGCAATTTTCATTATGTTCC+TGG + tig0042327:9377-9396 Msa1462510:intron 30.0%
ATTAAATCCATAGTACATCC+AGG - tig0042327:9398-9417 Msa1462510:intergenic 30.0%
!! ATGTTTTAGGTCATGTTAAC+AGG + tig0042327:9503-9522 Msa1462510:intron 30.0%
ACATATGGGTAATGTTAATC+AGG - tig0042327:9655-9674 Msa1462510:intergenic 30.0%
!!! ATTTTTGGTTTCAATTGGTG+TGG + tig0042327:9724-9743 Msa1462510:intron 30.0%
CATGGAAAGTAAGCATTAAT+AGG + tig0042327:9808-9827 Msa1462510:intron 30.0%
TAGAGGATTGCTATATAGTA+CGG - tig0042327:9862-9881 Msa1462510:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + tig0042327:9939-9958 Msa1462510:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + tig0042327:9940-9959 Msa1462510:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + tig0042327:10169-10188 Msa1462510:CDS 30.0%
TAAAATAAACACAGTGAAGG+GGG - tig0042327:10567-10586 Msa1462510:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + tig0042327:10821-10840 Msa1462510:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - tig0042327:10991-11010 Msa1462510:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + tig0042327:10997-11016 Msa1462510:exon 30.0%
CAAACAAAAAATTGAGAGAG+CGG - tig0042327:11063-11082 Msa1462510:intergenic 30.0%
AGGTCCTAGTATGAAAATAA+GGG - tig0042327:11111-11130 Msa1462510:intergenic 30.0%
TAGGTCCTAGTATGAAAATA+AGG - tig0042327:11112-11131 Msa1462510:intergenic 30.0%
CCTACTAGAATACAAATAGT+TGG - tig0042327:11145-11164 Msa1462510:intergenic 30.0%
CCAACTATTTGTATTCTAGT+AGG + tig0042327:11142-11161 Msa1462510:three_prime_UTR 30.0%
AGTAGGAATTAGTATCGTAT+TGG + tig0042327:11159-11178 Msa1462510:three_prime_UTR 30.0%
GTAGGAATTAGTATCGTATT+GGG + tig0042327:11160-11179 Msa1462510:three_prime_UTR 30.0%
TGGAAAATGATATTTGGTAC+GGG + tig0042327:9301-9320 Msa1462510:intron 30.0%
GATTTGCATACGAAAATTCA+CGG + tig0042327:9325-9344 Msa1462510:intron 30.0%
! TGCAATTTTCATTATGTTCC+TGG + tig0042327:9377-9396 Msa1462510:intron 30.0%
ATTAAATCCATAGTACATCC+AGG - tig0042327:9398-9417 Msa1462510:intergenic 30.0%
!! ATGTTTTAGGTCATGTTAAC+AGG + tig0042327:9503-9522 Msa1462510:intron 30.0%
ACATATGGGTAATGTTAATC+AGG - tig0042327:9655-9674 Msa1462510:intergenic 30.0%
!!! ATTTTTGGTTTCAATTGGTG+TGG + tig0042327:9724-9743 Msa1462510:intron 30.0%
CATGGAAAGTAAGCATTAAT+AGG + tig0042327:9808-9827 Msa1462510:intron 30.0%
TAGAGGATTGCTATATAGTA+CGG - tig0042327:9862-9881 Msa1462510:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + tig0042327:9939-9958 Msa1462510:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + tig0042327:9940-9959 Msa1462510:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + tig0042327:10169-10188 Msa1462510:CDS 30.0%
TAAAATAAACACAGTGAAGG+GGG - tig0042327:10567-10586 Msa1462510:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + tig0042327:10821-10840 Msa1462510:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - tig0042327:10991-11010 Msa1462510:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + tig0042327:10997-11016 Msa1462510:exon 30.0%
CAAACAAAAAATTGAGAGAG+CGG - tig0042327:11063-11082 Msa1462510:intergenic 30.0%
AGGTCCTAGTATGAAAATAA+GGG - tig0042327:11111-11130 Msa1462510:intergenic 30.0%
TAGGTCCTAGTATGAAAATA+AGG - tig0042327:11112-11131 Msa1462510:intergenic 30.0%
CCTACTAGAATACAAATAGT+TGG - tig0042327:11145-11164 Msa1462510:intergenic 30.0%
CCAACTATTTGTATTCTAGT+AGG + tig0042327:11142-11161 Msa1462510:three_prime_UTR 30.0%
AGTAGGAATTAGTATCGTAT+TGG + tig0042327:11159-11178 Msa1462510:three_prime_UTR 30.0%
TCTATTCAACTCAAACCCAA+AGG - tig0042327:9135-9154 Msa1462510:intergenic 35.0%
ATTATCAGTGAGAAAAGTGG+CGG - tig0042327:9272-9291 Msa1462510:intergenic 35.0%
! CGTTGAAATTGCATGTTTTC+AGG - tig0042327:9354-9373 Msa1462510:intergenic 35.0%
TTATGTTCCTGGATGTACTA+TGG + tig0042327:9388-9407 Msa1462510:intron 35.0%
! TTTTCCTTAACCAATGTCCT+AGG - tig0042327:9532-9551 Msa1462510:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - tig0042327:9994-10013 Msa1462510:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + tig0042327:10168-10187 Msa1462510:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + tig0042327:10318-10337 Msa1462510:CDS 35.0%
TCTATCTATCTATCTATCGC+AGG + tig0042327:10421-10440 Msa1462510:intron 35.0%
CTATCTATCTATCTATCGCA+GGG + tig0042327:10422-10441 Msa1462510:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - tig0042327:10731-10750 Msa1462510:intergenic 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + tig0042327:10870-10889 Msa1462510:CDS 35.0%
TTGTTAGGTCGATTGAATCA+CGG + tig0042327:10905-10924 Msa1462510:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - tig0042327:10953-10972 Msa1462510:intergenic 35.0%
!!! ACCTCCCTTATTTTCATACT+AGG + tig0042327:11104-11123 Msa1462510:three_prime_UTR 35.0%
TCCTAGTATGAAAATAAGGG+AGG - tig0042327:11108-11127 Msa1462510:intergenic 35.0%
TCTATTCAACTCAAACCCAA+AGG - tig0042327:9135-9154 Msa1462510:intergenic 35.0%
ATTATCAGTGAGAAAAGTGG+CGG - tig0042327:9272-9291 Msa1462510:intergenic 35.0%
! CGTTGAAATTGCATGTTTTC+AGG - tig0042327:9354-9373 Msa1462510:intergenic 35.0%
TTATGTTCCTGGATGTACTA+TGG + tig0042327:9388-9407 Msa1462510:intron 35.0%
! TTTTCCTTAACCAATGTCCT+AGG - tig0042327:9532-9551 Msa1462510:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - tig0042327:9994-10013 Msa1462510:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + tig0042327:10168-10187 Msa1462510:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + tig0042327:10318-10337 Msa1462510:CDS 35.0%
TCTATCTATCTATCTATCGC+AGG + tig0042327:10421-10440 Msa1462510:intron 35.0%
CTATCTATCTATCTATCGCA+GGG + tig0042327:10422-10441 Msa1462510:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - tig0042327:10731-10750 Msa1462510:intergenic 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + tig0042327:10870-10889 Msa1462510:CDS 35.0%
TTGTTAGGTCGATTGAATCA+CGG + tig0042327:10905-10924 Msa1462510:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - tig0042327:10953-10972 Msa1462510:intergenic 35.0%
!!! ACCTCCCTTATTTTCATACT+AGG + tig0042327:11104-11123 Msa1462510:three_prime_UTR 35.0%
TCCTAGTATGAAAATAAGGG+AGG - tig0042327:11108-11127 Msa1462510:intergenic 35.0%
TTCAACTCAAACCCAAAGGA+TGG - tig0042327:9131-9150 Msa1462510:intergenic 40.0%
ATCCTTCCTTCCTTCTTCTT+CGG + tig0042327:9199-9218 Msa1462510:intron 40.0%
! TGTTTTCTTAACCAGTGCTC+TGG + tig0042327:9626-9645 Msa1462510:intron 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - tig0042327:10000-10019 Msa1462510:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + tig0042327:10098-10117 Msa1462510:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + tig0042327:10204-10223 Msa1462510:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + tig0042327:10321-10340 Msa1462510:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + tig0042327:10336-10355 Msa1462510:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + tig0042327:10667-10686 Msa1462510:intron 40.0%
! GTTTTTCATATGCGCTGTCA+AGG + tig0042327:10741-10760 Msa1462510:CDS 40.0%
! GATCAGAGGCATGTTGTATT+TGG + tig0042327:10859-10878 Msa1462510:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + tig0042327:10874-10893 Msa1462510:CDS 40.0%
TGTTAGGTCGATTGAATCAC+GGG + tig0042327:10906-10925 Msa1462510:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - tig0042327:10952-10971 Msa1462510:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - tig0042327:10954-10973 Msa1462510:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + tig0042327:11023-11042 Msa1462510:three_prime_UTR 40.0%
TTCAACTCAAACCCAAAGGA+TGG - tig0042327:9131-9150 Msa1462510:intergenic 40.0%
ATCCTTCCTTCCTTCTTCTT+CGG + tig0042327:9199-9218 Msa1462510:intron 40.0%
! TGTTTTCTTAACCAGTGCTC+TGG + tig0042327:9626-9645 Msa1462510:intron 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - tig0042327:10000-10019 Msa1462510:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + tig0042327:10098-10117 Msa1462510:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + tig0042327:10204-10223 Msa1462510:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + tig0042327:10321-10340 Msa1462510:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + tig0042327:10336-10355 Msa1462510:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + tig0042327:10667-10686 Msa1462510:intron 40.0%
! GTTTTTCATATGCGCTGTCA+AGG + tig0042327:10741-10760 Msa1462510:CDS 40.0%
! GATCAGAGGCATGTTGTATT+TGG + tig0042327:10859-10878 Msa1462510:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + tig0042327:10874-10893 Msa1462510:CDS 40.0%
TGTTAGGTCGATTGAATCAC+GGG + tig0042327:10906-10925 Msa1462510:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - tig0042327:10952-10971 Msa1462510:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - tig0042327:10954-10973 Msa1462510:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + tig0042327:11023-11042 Msa1462510:three_prime_UTR 40.0%
! ATGGTGGTGAATCCATCCTT+TGG + tig0042327:9116-9135 Msa1462510:intron 45.0%
! TGGTGGTGAATCCATCCTTT+GGG + tig0042327:9117-9136 Msa1462510:intron 45.0%
TCAACACCGAAGAAGAAGGA+AGG - tig0042327:9208-9227 Msa1462510:intergenic 45.0%
TGGTTCAACACCGAAGAAGA+AGG - tig0042327:9212-9231 Msa1462510:intergenic 45.0%
TTGAATGCAGCAACAGCCAT+CGG - tig0042327:9236-9255 Msa1462510:intergenic 45.0%
GTCATGTTAACAGGTGTCCT+AGG + tig0042327:9512-9531 Msa1462510:intron 45.0%
TAACAGGTGTCCTAGGACAT+TGG + tig0042327:9519-9538 Msa1462510:intron 45.0%
! GTGTCCTAGGACATTGGTTA+AGG + tig0042327:9525-9544 Msa1462510:intron 45.0%
GATTGATTGTCTTGGTTGGG+TGG + tig0042327:9943-9962 Msa1462510:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - tig0042327:10005-10024 Msa1462510:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + tig0042327:10003-10022 Msa1462510:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + tig0042327:10004-10023 Msa1462510:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + tig0042327:10005-10024 Msa1462510:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + tig0042327:10070-10089 Msa1462510:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + tig0042327:10071-10090 Msa1462510:CDS 45.0%
AAAGTGAGGGCTGTGGAAAA+TGG + tig0042327:10084-10103 Msa1462510:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + tig0042327:10195-10214 Msa1462510:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - tig0042327:10239-10258 Msa1462510:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - tig0042327:10240-10259 Msa1462510:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + tig0042327:10428-10447 Msa1462510:intron 45.0%
!! ACTGGAGGCAAAAGTATCTC+TGG + tig0042327:10446-10465 Msa1462510:CDS 45.0%
! AACTGACTCCCATTGGTGTT+GGG - tig0042327:10724-10743 Msa1462510:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - tig0042327:10725-10744 Msa1462510:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - tig0042327:10885-10904 Msa1462510:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + tig0042327:10890-10909 Msa1462510:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + tig0042327:10958-10977 Msa1462510:CDS 45.0%
! ATGGTGGTGAATCCATCCTT+TGG + tig0042327:9116-9135 Msa1462510:intron 45.0%
! TGGTGGTGAATCCATCCTTT+GGG + tig0042327:9117-9136 Msa1462510:intron 45.0%
TCAACACCGAAGAAGAAGGA+AGG - tig0042327:9208-9227 Msa1462510:intergenic 45.0%
TGGTTCAACACCGAAGAAGA+AGG - tig0042327:9212-9231 Msa1462510:intergenic 45.0%
TTGAATGCAGCAACAGCCAT+CGG - tig0042327:9236-9255 Msa1462510:intergenic 45.0%
GTCATGTTAACAGGTGTCCT+AGG + tig0042327:9512-9531 Msa1462510:intron 45.0%
TAACAGGTGTCCTAGGACAT+TGG + tig0042327:9519-9538 Msa1462510:intron 45.0%
! GTGTCCTAGGACATTGGTTA+AGG + tig0042327:9525-9544 Msa1462510:intron 45.0%
GATTGATTGTCTTGGTTGGG+TGG + tig0042327:9943-9962 Msa1462510:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - tig0042327:10005-10024 Msa1462510:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + tig0042327:10003-10022 Msa1462510:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + tig0042327:10004-10023 Msa1462510:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + tig0042327:10005-10024 Msa1462510:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + tig0042327:10070-10089 Msa1462510:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + tig0042327:10071-10090 Msa1462510:CDS 45.0%
AAAGTGAGGGCTGTGGAAAA+TGG + tig0042327:10084-10103 Msa1462510:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + tig0042327:10195-10214 Msa1462510:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - tig0042327:10239-10258 Msa1462510:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - tig0042327:10240-10259 Msa1462510:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + tig0042327:10428-10447 Msa1462510:intron 45.0%
!! ACTGGAGGCAAAAGTATCTC+TGG + tig0042327:10446-10465 Msa1462510:CDS 45.0%
! AACTGACTCCCATTGGTGTT+GGG - tig0042327:10724-10743 Msa1462510:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - tig0042327:10725-10744 Msa1462510:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - tig0042327:10885-10904 Msa1462510:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + tig0042327:10890-10909 Msa1462510:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + tig0042327:10958-10977 Msa1462510:CDS 45.0%
!! AAATATATATATATATATAG+AGG - tig0042327:9879-9898 Msa1462510:intergenic 5.0%
!! AAATATATATATATATATAG+AGG - tig0042327:9879-9898 Msa1462510:intergenic 5.0%
TCGCGCGTGCGTTAAAATTG+AGG - tig0042327:9178-9197 Msa1462510:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - tig0042327:9204-9223 Msa1462510:intergenic 50.0%
!! TTCGGTGTTGAACCAACCGA+TGG + tig0042327:9217-9236 Msa1462510:intron 50.0%
TAATCAGGTCTCCAGAGCAC+TGG - tig0042327:9640-9659 Msa1462510:intergenic 50.0%
ACGTGTACTGTTTGAGCGCA+TGG + tig0042327:9790-9809 Msa1462510:intron 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - tig0042327:10006-10025 Msa1462510:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - tig0042327:10040-10059 Msa1462510:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - tig0042327:10041-10060 Msa1462510:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + tig0042327:10045-10064 Msa1462510:CDS 50.0%
ACAAGTGAAAGTGAGGGCTG+TGG + tig0042327:10077-10096 Msa1462510:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + tig0042327:10176-10195 Msa1462510:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + tig0042327:10180-10199 Msa1462510:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - tig0042327:10311-10330 Msa1462510:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + tig0042327:10431-10450 Msa1462510:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - tig0042327:10694-10713 Msa1462510:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + tig0042327:10697-10716 Msa1462510:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + tig0042327:10712-10731 Msa1462510:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + tig0042327:10713-10732 Msa1462510:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + tig0042327:10879-10898 Msa1462510:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + tig0042327:10939-10958 Msa1462510:CDS 50.0%
TCGCGCGTGCGTTAAAATTG+AGG - tig0042327:9178-9197 Msa1462510:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - tig0042327:9204-9223 Msa1462510:intergenic 50.0%
!! TTCGGTGTTGAACCAACCGA+TGG + tig0042327:9217-9236 Msa1462510:intron 50.0%
TAATCAGGTCTCCAGAGCAC+TGG - tig0042327:9640-9659 Msa1462510:intergenic 50.0%
ACGTGTACTGTTTGAGCGCA+TGG + tig0042327:9790-9809 Msa1462510:intron 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - tig0042327:10006-10025 Msa1462510:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - tig0042327:10040-10059 Msa1462510:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - tig0042327:10041-10060 Msa1462510:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + tig0042327:10045-10064 Msa1462510:CDS 50.0%
ACAAGTGAAAGTGAGGGCTG+TGG + tig0042327:10077-10096 Msa1462510:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + tig0042327:10176-10195 Msa1462510:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + tig0042327:10180-10199 Msa1462510:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - tig0042327:10311-10330 Msa1462510:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + tig0042327:10431-10450 Msa1462510:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - tig0042327:10694-10713 Msa1462510:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + tig0042327:10697-10716 Msa1462510:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + tig0042327:10712-10731 Msa1462510:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + tig0042327:10713-10732 Msa1462510:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + tig0042327:10879-10898 Msa1462510:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + tig0042327:10939-10958 Msa1462510:CDS 50.0%
ATGCAGCAACAGCCATCGGT+TGG - tig0042327:9232-9251 Msa1462510:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - tig0042327:10186-10205 Msa1462510:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + tig0042327:10184-10203 Msa1462510:CDS 55.0%
TCTCACTGGTGGAAAGGGCA+CGG - tig0042327:10260-10279 Msa1462510:intergenic 55.0%
TGCCCTTTCCACCAGTGAGA+AGG + tig0042327:10260-10279 Msa1462510:CDS 55.0%
GCCCTTTCCACCAGTGAGAA+GGG + tig0042327:10261-10280 Msa1462510:CDS 55.0%
GCCCTTCTCACTGGTGGAAA+GGG - tig0042327:10265-10284 Msa1462510:intergenic 55.0%
AGCCCTTCTCACTGGTGGAA+AGG - tig0042327:10266-10285 Msa1462510:intergenic 55.0%
TCCACCAGTGAGAAGGGCTT+TGG + tig0042327:10267-10286 Msa1462510:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+TGG - tig0042327:10274-10293 Msa1462510:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - tig0042327:10304-10323 Msa1462510:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + tig0042327:10302-10321 Msa1462510:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - tig0042327:10307-10326 Msa1462510:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - tig0042327:10689-10708 Msa1462510:intergenic 55.0%
CATGACATTGGCAGACGCTG+TGG + tig0042327:10833-10852 Msa1462510:intron 55.0%
GAATCACGGGAGACTGATCG+TGG + tig0042327:10919-10938 Msa1462510:CDS 55.0%
ATGCAGCAACAGCCATCGGT+TGG - tig0042327:9232-9251 Msa1462510:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - tig0042327:10186-10205 Msa1462510:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + tig0042327:10184-10203 Msa1462510:CDS 55.0%
TCTCACTGGTGGAAAGGGCA+CGG - tig0042327:10260-10279 Msa1462510:intergenic 55.0%
TGCCCTTTCCACCAGTGAGA+AGG + tig0042327:10260-10279 Msa1462510:CDS 55.0%
GCCCTTTCCACCAGTGAGAA+GGG + tig0042327:10261-10280 Msa1462510:CDS 55.0%
GCCCTTCTCACTGGTGGAAA+GGG - tig0042327:10265-10284 Msa1462510:intergenic 55.0%
AGCCCTTCTCACTGGTGGAA+AGG - tig0042327:10266-10285 Msa1462510:intergenic 55.0%
TCCACCAGTGAGAAGGGCTT+TGG + tig0042327:10267-10286 Msa1462510:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+TGG - tig0042327:10274-10293 Msa1462510:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - tig0042327:10304-10323 Msa1462510:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + tig0042327:10302-10321 Msa1462510:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - tig0042327:10307-10326 Msa1462510:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - tig0042327:10689-10708 Msa1462510:intergenic 55.0%
CATGACATTGGCAGACGCTG+TGG + tig0042327:10833-10852 Msa1462510:intron 55.0%
GAATCACGGGAGACTGATCG+TGG + tig0042327:10919-10938 Msa1462510:CDS 55.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + tig0042327:10008-10027 Msa1462510:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + tig0042327:10027-10046 Msa1462510:CDS 60.0%
GCCAAAGCCCTTCTCACTGG+TGG - tig0042327:10271-10290 Msa1462510:intergenic 60.0%
GATGACGCGATGGAAGGTGG+AGG - tig0042327:10301-10320 Msa1462510:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - tig0042327:10676-10695 Msa1462510:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + tig0042327:10673-10692 Msa1462510:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + tig0042327:10687-10706 Msa1462510:CDS 60.0%
ACATTGGCAGACGCTGTGGC+TGG + tig0042327:10837-10856 Msa1462510:intron 60.0%
AGACGCTGTGGCTGGATCAG+AGG + tig0042327:10845-10864 Msa1462510:intron 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + tig0042327:10008-10027 Msa1462510:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + tig0042327:10027-10046 Msa1462510:CDS 60.0%
GCCAAAGCCCTTCTCACTGG+TGG - tig0042327:10271-10290 Msa1462510:intergenic 60.0%
GATGACGCGATGGAAGGTGG+AGG - tig0042327:10301-10320 Msa1462510:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - tig0042327:10676-10695 Msa1462510:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + tig0042327:10673-10692 Msa1462510:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + tig0042327:10687-10706 Msa1462510:CDS 60.0%
ACATTGGCAGACGCTGTGGC+TGG + tig0042327:10837-10856 Msa1462510:intron 60.0%
AGACGCTGTGGCTGGATCAG+AGG + tig0042327:10845-10864 Msa1462510:intron 60.0%
GCATCTCCGTCGGGGTGGTT+AGG + tig0042327:10013-10032 Msa1462510:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - tig0042327:10022-10041 Msa1462510:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + tig0042327:10026-10045 Msa1462510:CDS 65.0%
GCATCTCCGTCGGGGTGGTT+AGG + tig0042327:10013-10032 Msa1462510:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - tig0042327:10022-10041 Msa1462510:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + tig0042327:10026-10045 Msa1462510:CDS 65.0%
GTCGGGGTGGTTAGGTCCCG+AGG + tig0042327:10021-10040 Msa1462510:CDS 70.0%
GTCGGGGTGGTTAGGTCCCG+AGG + tig0042327:10021-10040 Msa1462510:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0042327 gene 9116 11182 9116 ID=Msa1462510;Name=Msa1462510
tig0042327 mRNA 9116 11182 9116 ID=Msa1462510-mRNA-1;Parent=Msa1462510;Name=Msa1462510-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.6|0.5|1|1|1|6|183|226
tig0042327 exon 9116 9121 9116 ID=Msa1462510-mRNA-1:exon:23684;Parent=Msa1462510-mRNA-1
tig0042327 exon 9970 10125 9970 ID=Msa1462510-mRNA-1:exon:23685;Parent=Msa1462510-mRNA-1
tig0042327 exon 10138 10362 10138 ID=Msa1462510-mRNA-1:exon:23686;Parent=Msa1462510-mRNA-1
tig0042327 exon 10443 10497 10443 ID=Msa1462510-mRNA-1:exon:23687;Parent=Msa1462510-mRNA-1
tig0042327 exon 10677 10762 10677 ID=Msa1462510-mRNA-1:exon:23688;Parent=Msa1462510-mRNA-1
tig0042327 exon 10847 11182 10847 ID=Msa1462510-mRNA-1:exon:23689;Parent=Msa1462510-mRNA-1
tig0042327 CDS 9116 9121 9116 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 CDS 9970 10125 9970 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 CDS 10138 10362 10138 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 CDS 10443 10497 10443 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 CDS 10677 10762 10677 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 CDS 10847 10999 10847 ID=Msa1462510-mRNA-1:cds;Parent=Msa1462510-mRNA-1
tig0042327 three_prime_UTR 11000 11182 11000 ID=Msa1462510-mRNA-1:three_prime_utr;Parent=Msa1462510-mRNA-1
Gene Sequence

>Msa1462510

ATGGTGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCTGTGGAAAATGGTAGTAGTTCAGAGGAGAAATCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCAGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTCTGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCGCTGTCAAGACGCTGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTCGATTGAATCACGGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA

Protein sequence

>Msa1462510

MVSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTSEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSISGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICAVKTLWLDQRHVVFGQVLEGMDIVRSIESRETDRGDRPLKKVTISDCGELPIA*