AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350670 MtrunA17_Chr5g0412501 97.059 272 4 2 1 268 1 272 0.0 539
Msa1350670 MtrunA17_Chr5g0427051 47.059 272 92 9 21 268 25 268 2.86e-64 202
Msa1350670 MtrunA17_Chr3g0133181 55.340 206 69 7 71 264 76 270 3.06e-63 199
Msa1350670 MtrunA17_Chr2g0315941 44.872 234 119 4 43 267 35 267 5.57e-59 188
Msa1350670 MtrunA17_Chr8g0367691 43.348 233 123 3 43 267 36 267 3.10e-56 181
Msa1350670 MtrunA17_Chr1g0188441 45.274 201 83 5 73 267 7 186 2.42e-54 174
Msa1350670 MtrunA17_Chr7g0217231 45.833 216 73 6 75 267 88 282 8.02e-52 172
Msa1350670 MtrunA17_Chr5g0404271 42.254 213 93 4 72 267 96 295 3.39e-51 169
Msa1350670 MtrunA17_Chr4g0076821 42.917 240 86 6 74 267 112 346 5.98e-51 171
Msa1350670 MtrunA17_Chr6g0453231 49.246 199 90 4 75 267 91 284 1.53e-47 161
Msa1350670 MtrunA17_Chr6g0479901 37.173 191 69 4 75 263 19 160 1.58e-32 117
Msa1350670 MtrunA17_Chr8g0357741 61.333 75 26 2 195 267 23 96 3.11e-22 88.2
Msa1350670 MtrunA17_Chr8g0357721 33.121 157 72 3 86 242 16 139 4.00e-22 89.4
Msa1350670 MtrunA17_Chr8g0361671 67.188 64 20 1 205 267 271 334 2.30e-21 92.4
Msa1350670 MtrunA17_Chr8g0361671 71.154 52 13 1 75 124 64 115 5.42e-18 82.8
Msa1350670 MtrunA17_Chr3g0092371 60.345 58 23 0 74 131 19 76 6.61e-19 79.0
Msa1350670 MtrunA17_Chr6g0453221 58.824 51 17 1 73 123 19 65 5.00e-14 65.9
Msa1350670 MtrunA17_Chr4g0060731 58.000 50 18 1 75 124 25 71 3.93e-13 63.5
Msa1350670 MtrunA17_Chr7g0243651 70.000 40 12 0 74 113 2 41 4.75e-13 63.2
Msa1350670 MtrunA17_Chr8g0349871 52.000 50 24 0 206 255 14 63 3.98e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350670 AT4G24660.1 54.040 198 69 4 71 268 45 220 4.97e-67 207
Msa1350670 AT4G24660.2 53.093 194 69 4 71 264 45 216 4.27e-64 201
Msa1350670 AT5G65410.1 50.732 205 87 3 64 268 64 254 9.28e-62 196
Msa1350670 AT2G02540.2 45.024 211 87 5 74 267 86 284 5.49e-58 187
Msa1350670 AT2G02540.1 45.024 211 87 5 74 267 86 284 5.49e-58 187
Msa1350670 AT1G14440.1 44.878 205 89 5 74 267 89 280 3.64e-52 172
Msa1350670 AT1G14440.2 44.878 205 89 5 74 267 89 280 3.64e-52 172
Msa1350670 AT2G18350.1 41.772 237 98 6 38 267 57 260 5.91e-50 165
Msa1350670 AT1G69600.1 45.312 192 96 3 75 264 31 215 2.67e-46 155
Msa1350670 AT5G15210.1 47.959 196 81 3 73 261 54 235 7.73e-45 152
Msa1350670 AT5G60480.1 39.462 223 110 5 43 262 4 204 1.53e-43 147
Msa1350670 AT3G50890.1 42.857 203 89 5 73 266 58 242 4.90e-41 142
Msa1350670 AT3G28920.1 40.670 209 102 4 72 264 49 251 3.43e-40 141
Msa1350670 AT5G39760.1 41.204 216 95 5 75 267 56 262 4.19e-40 142
Msa1350670 AT5G42780.1 36.500 200 98 5 72 264 61 238 2.10e-27 106
Msa1350670 AT1G75240.1 75.000 52 13 0 73 124 74 125 2.16e-23 97.1
Msa1350670 AT1G74660.2 65.000 60 21 0 73 132 37 96 2.27e-23 91.7
Msa1350670 AT1G74660.1 64.407 59 21 0 73 131 37 95 1.94e-22 89.4
Msa1350670 AT3G28917.1 56.667 60 25 1 73 131 31 90 9.57e-18 77.0
Msa1350670 AT1G18835.1 55.932 59 23 1 73 131 24 79 8.36e-17 73.9

Find 73 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGGGTATTTGCATGTTTC+TGG 0.138100 tig0011743:-13081 Msa1350670:CDS
GTTGGAGTTAGCTGAGAAAT+TGG 0.240875 tig0011743:-12890 Msa1350670:CDS
TTAACAACTCTTGATGAGTT+TGG 0.309890 tig0011743:+13474 Msa1350670:intergenic
CTTGCTTTACCGTCAACTTC+TGG 0.335479 tig0011743:-13039 Msa1350670:CDS
AGCGTCATGTTCTTAAGGTT+TGG 0.351100 tig0011743:-12804 Msa1350670:CDS
TCAGAAACATGATGAAGGTT+TGG 0.379981 tig0011743:-12857 Msa1350670:CDS
ATTGGTGGTCATGCTCTTGA+TGG 0.382322 tig0011743:-13294 Msa1350670:CDS
TGTTAAGCGTCATGTTCTTA+AGG 0.403141 tig0011743:-12809 Msa1350670:CDS
TTGGAGTTAGCTGAGAAATT+GGG 0.451712 tig0011743:-12889 Msa1350670:CDS
ACAAGAGGAAGAATTATGTA+TGG 0.451760 tig0011743:-13520 Msa1350670:CDS
GTTTCTGGACAGCAGAGGAC+TGG 0.452007 tig0011743:-13066 Msa1350670:CDS
CGAATTCAGAAACATGATGA+AGG 0.457300 tig0011743:-12862 Msa1350670:CDS
AGCAACATGGTTGGTGGTGT+TGG 0.458102 tig0011743:-13366 Msa1350670:CDS
ATGGTTGGTGGTGTTGGAAA+TGG 0.467173 tig0011743:-13360 Msa1350670:CDS
TGCGGTGAGTTTATGCCGGC+AGG 0.468779 tig0011743:-13270 Msa1350670:CDS
CCGTCAACTTCTGGTGGCGG+TGG 0.471225 tig0011743:-13030 Msa1350670:CDS
GGCAGGAAGTGAAGGAACTT+TGG 0.482158 tig0011743:-13253 Msa1350670:CDS
CATAACAACAAACACACTCT+TGG 0.491859 tig0011743:-12778 Msa1350670:CDS
AATCCAAGTGGTGGTGGAAG+TGG 0.494106 tig0011743:-12967 Msa1350670:CDS
ACCACCTCCTCCACAGTTCG+CGG 0.495788 tig0011743:-13121 Msa1350670:CDS
GAACCACTTCCACCACCACT+TGG 0.498974 tig0011743:+12964 Msa1350670:intergenic
GCCGCGAACTGTGGAGGAGG+TGG 0.503461 tig0011743:+13120 Msa1350670:intergenic
AGTGGATGAGTGACCATGAT+AGG 0.506193 tig0011743:+13432 Msa1350670:intergenic
GCGAACTGTGGAGGAGGTGG+TGG 0.508708 tig0011743:+13123 Msa1350670:intergenic
TCAACTTCTGGTGGCGGTGG+AGG 0.510550 tig0011743:-13027 Msa1350670:CDS
GCTTATTATCGAACTCCAGC+GGG 0.510651 tig0011743:-13099 Msa1350670:CDS
TCAAGAGTTGTTAAGATGCC+TGG 0.513910 tig0011743:-13465 Msa1350670:CDS
TGATGATGTGTCAACAGAAA+AGG 0.515803 tig0011743:+13150 Msa1350670:intergenic
GTTTCGAATCCAAGTGGTGG+TGG 0.518013 tig0011743:-12973 Msa1350670:CDS
AAGAATCATGCTGTAGGTAT+TGG 0.519190 tig0011743:-13312 Msa1350670:CDS
AATCATGCTGTAGGTATTGG+TGG 0.532401 tig0011743:-13309 Msa1350670:CDS
CCACCGCCACCAGAAGTTGA+CGG 0.538970 tig0011743:+13030 Msa1350670:intergenic
GTTCAAGTAAGAAGAGGCAT+AGG 0.547707 tig0011743:-12945 Msa1350670:CDS
TGGTGGAACTGAACCTATCA+TGG 0.550765 tig0011743:-13445 Msa1350670:CDS
AAAGTTCCTTCACTTCCTGC+CGG 0.552211 tig0011743:+13255 Msa1350670:intergenic
TAATAAGCCGCGAACTGTGG+AGG 0.552837 tig0011743:+13114 Msa1350670:intergenic
TTACCGTCAACTTCTGGTGG+CGG 0.554834 tig0011743:-13033 Msa1350670:CDS
AGATCAAGAAGAGGAACAAG+AGG 0.555904 tig0011743:-13535 Msa1350670:CDS
AAAATTCACGCAGGAACAGA+AGG 0.559129 tig0011743:-12920 Msa1350670:CDS
TAAGCCGCGAACTGTGGAGG+AGG 0.562343 tig0011743:+13117 Msa1350670:intergenic
GATGATGTGTCAACAGAAAA+GGG 0.562574 tig0011743:+13151 Msa1350670:intergenic
TTTCTGGACAGCAGAGGACT+GGG 0.567641 tig0011743:-13065 Msa1350670:CDS
GGAACAGAAGGATAAGATGT+TGG 0.570619 tig0011743:-12908 Msa1350670:CDS
CAAGAGGAAGAATTATGTAT+GGG 0.573408 tig0011743:-13519 Msa1350670:CDS
GAGGAAGAATTATGTATGGG+TGG 0.575821 tig0011743:-13516 Msa1350670:CDS
GGTCATGCTCTTGATGGTTG+CGG 0.581532 tig0011743:-13288 Msa1350670:CDS
GCTTTACCGTCAACTTCTGG+TGG 0.583371 tig0011743:-13036 Msa1350670:CDS
GAAGAATTATGTATGGGTGG+AGG 0.586004 tig0011743:-13513 Msa1350670:CDS
GTGGAGGTACGCAGAGTACG+AGG 0.588222 tig0011743:-13011 Msa1350670:CDS
TTTATGCCGGCAGGAAGTGA+AGG 0.589438 tig0011743:-13261 Msa1350670:CDS
ACTGTGGAGGAGGTGGTGGA+TGG 0.597538 tig0011743:+13127 Msa1350670:intergenic
TCATCGGCAGATGTTACTGC+CGG 0.600307 tig0011743:-13177 Msa1350670:CDS
TGTCAACAGAAAAGGGTCAC+CGG 0.601235 tig0011743:+13158 Msa1350670:intergenic
CTTCCACCGAAAAGAGTCAT+CGG 0.604115 tig0011743:-13193 Msa1350670:CDS
TGGTTGCGGTGAGTTTATGC+CGG 0.613273 tig0011743:-13274 Msa1350670:CDS
AATGGAAACAGCAACATGGT+TGG 0.615914 tig0011743:-13375 Msa1350670:CDS
CAAGAATTCTGTAATGAAAG+CGG 0.619098 tig0011743:-12832 Msa1350670:CDS
GGCTTATTATCGAACTCCAG+CGG 0.620210 tig0011743:-13100 Msa1350670:CDS
TTGTTAAGGATGTTTCTGAG+TGG 0.621550 tig0011743:+13414 Msa1350670:intergenic
GAAACATGCAAATACCCCGC+TGG 0.623881 tig0011743:+13084 Msa1350670:intergenic
AGTTAGCTGAGAAATTGGGT+TGG 0.627133 tig0011743:-12885 Msa1350670:CDS
TGTCTGAAGAATCATGCTGT+AGG 0.629570 tig0011743:-13318 Msa1350670:CDS
CAACAATGGAAACAGCAACA+TGG 0.631699 tig0011743:-13379 Msa1350670:CDS
TGCATGTTTCTGGACAGCAG+AGG 0.639645 tig0011743:-13071 Msa1350670:CDS
GGAAACAGCAACATGGTTGG+TGG 0.639744 tig0011743:-13372 Msa1350670:CDS
ATGATAGGTTCAGTTCCACC+AGG 0.642551 tig0011743:+13447 Msa1350670:intergenic
GAAGTGGTTCAAGTAAGAAG+AGG 0.649609 tig0011743:-12951 Msa1350670:CDS
AGAGTTGTTAAGATGCCTGG+TGG 0.674556 tig0011743:-13462 Msa1350670:CDS
GAAGATGTTTCGAATCCAAG+TGG 0.685294 tig0011743:-12979 Msa1350670:CDS
TGGAGGTACGCAGAGTACGA+GGG 0.690082 tig0011743:-13010 Msa1350670:CDS
GTGTTGGAAATGGAAAAGCA+AGG 0.695951 tig0011743:-13350 Msa1350670:CDS
GCATAGGACAAAATTCACGC+AGG 0.713722 tig0011743:-12929 Msa1350670:CDS
GATGTTTCGAATCCAAGTGG+TGG 0.738004 tig0011743:-12976 Msa1350670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTTGATGAAGATCAAGAAG+AGG - tig0011743:12770-12789 Msa1350670:CDS 30.0%
ACAAGAGGAAGAATTATGTA+TGG - tig0011743:12794-12813 Msa1350670:CDS 30.0%
CAAGAGGAAGAATTATGTAT+GGG - tig0011743:12795-12814 Msa1350670:CDS 30.0%
TTAACAACTCTTGATGAGTT+TGG + tig0011743:12843-12862 Msa1350670:intergenic 30.0%
! TGTTGTTGTTGTTGTTGTTA+AGG + tig0011743:12917-12936 Msa1350670:intergenic 30.0%
AACAACAACAACAACAACAA+TGG - tig0011743:12918-12937 Msa1350670:CDS 30.0%
CAAGAATTCTGTAATGAAAG+CGG - tig0011743:13482-13501 Msa1350670:CDS 30.0%
! TTTTGATGAAGATCAAGAAG+AGG - tig0011743:12770-12789 Msa1350670:CDS 30.0%
ACAAGAGGAAGAATTATGTA+TGG - tig0011743:12794-12813 Msa1350670:CDS 30.0%
CAAGAGGAAGAATTATGTAT+GGG - tig0011743:12795-12814 Msa1350670:CDS 30.0%
TTAACAACTCTTGATGAGTT+TGG + tig0011743:12843-12862 Msa1350670:intergenic 30.0%
! TGTTGTTGTTGTTGTTGTTA+AGG + tig0011743:12917-12936 Msa1350670:intergenic 30.0%
AACAACAACAACAACAACAA+TGG - tig0011743:12918-12937 Msa1350670:CDS 30.0%
CAAGAATTCTGTAATGAAAG+CGG - tig0011743:13482-13501 Msa1350670:CDS 30.0%
! TTGTTAAGGATGTTTCTGAG+TGG + tig0011743:12903-12922 Msa1350670:intergenic 35.0%
AAGAATCATGCTGTAGGTAT+TGG - tig0011743:13002-13021 Msa1350670:CDS 35.0%
GATGATGTGTCAACAGAAAA+GGG + tig0011743:13166-13185 Msa1350670:intergenic 35.0%
! TGATGATGTGTCAACAGAAA+AGG + tig0011743:13167-13186 Msa1350670:intergenic 35.0%
TTGGAGTTAGCTGAGAAATT+GGG - tig0011743:13425-13444 Msa1350670:CDS 35.0%
CGAATTCAGAAACATGATGA+AGG - tig0011743:13452-13471 Msa1350670:CDS 35.0%
TCAGAAACATGATGAAGGTT+TGG - tig0011743:13457-13476 Msa1350670:CDS 35.0%
TGTTAAGCGTCATGTTCTTA+AGG - tig0011743:13505-13524 Msa1350670:CDS 35.0%
CATAACAACAAACACACTCT+TGG - tig0011743:13536-13555 Msa1350670:CDS 35.0%
! TTGTTAAGGATGTTTCTGAG+TGG + tig0011743:12903-12922 Msa1350670:intergenic 35.0%
AAGAATCATGCTGTAGGTAT+TGG - tig0011743:13002-13021 Msa1350670:CDS 35.0%
GATGATGTGTCAACAGAAAA+GGG + tig0011743:13166-13185 Msa1350670:intergenic 35.0%
! TGATGATGTGTCAACAGAAA+AGG + tig0011743:13167-13186 Msa1350670:intergenic 35.0%
TTGGAGTTAGCTGAGAAATT+GGG - tig0011743:13425-13444 Msa1350670:CDS 35.0%
CGAATTCAGAAACATGATGA+AGG - tig0011743:13452-13471 Msa1350670:CDS 35.0%
TCAGAAACATGATGAAGGTT+TGG - tig0011743:13457-13476 Msa1350670:CDS 35.0%
TGTTAAGCGTCATGTTCTTA+AGG - tig0011743:13505-13524 Msa1350670:CDS 35.0%
CATAACAACAAACACACTCT+TGG - tig0011743:13536-13555 Msa1350670:CDS 35.0%
AGATCAAGAAGAGGAACAAG+AGG - tig0011743:12779-12798 Msa1350670:CDS 40.0%
GAGGAAGAATTATGTATGGG+TGG - tig0011743:12798-12817 Msa1350670:CDS 40.0%
GAAGAATTATGTATGGGTGG+AGG - tig0011743:12801-12820 Msa1350670:CDS 40.0%
TCAAGAGTTGTTAAGATGCC+TGG - tig0011743:12849-12868 Msa1350670:CDS 40.0%
CAACAATGGAAACAGCAACA+TGG - tig0011743:12935-12954 Msa1350670:CDS 40.0%
AATGGAAACAGCAACATGGT+TGG - tig0011743:12939-12958 Msa1350670:CDS 40.0%
GTGTTGGAAATGGAAAAGCA+AGG - tig0011743:12964-12983 Msa1350670:CDS 40.0%
TGTCTGAAGAATCATGCTGT+AGG - tig0011743:12996-13015 Msa1350670:CDS 40.0%
!! AATCATGCTGTAGGTATTGG+TGG - tig0011743:13005-13024 Msa1350670:CDS 40.0%
! ACTCTTTTCGGTGGAAGTTA+CGG + tig0011743:13118-13137 Msa1350670:intergenic 40.0%
GAAGATGTTTCGAATCCAAG+TGG - tig0011743:13335-13354 Msa1350670:CDS 40.0%
GAAGTGGTTCAAGTAAGAAG+AGG - tig0011743:13363-13382 Msa1350670:CDS 40.0%
! GTTCAAGTAAGAAGAGGCAT+AGG - tig0011743:13369-13388 Msa1350670:CDS 40.0%
AAAATTCACGCAGGAACAGA+AGG - tig0011743:13394-13413 Msa1350670:CDS 40.0%
GGAACAGAAGGATAAGATGT+TGG - tig0011743:13406-13425 Msa1350670:CDS 40.0%
GTTGGAGTTAGCTGAGAAAT+TGG - tig0011743:13424-13443 Msa1350670:CDS 40.0%
AGTTAGCTGAGAAATTGGGT+TGG - tig0011743:13429-13448 Msa1350670:CDS 40.0%
AGCGTCATGTTCTTAAGGTT+TGG - tig0011743:13510-13529 Msa1350670:CDS 40.0%
AGATCAAGAAGAGGAACAAG+AGG - tig0011743:12779-12798 Msa1350670:CDS 40.0%
GAGGAAGAATTATGTATGGG+TGG - tig0011743:12798-12817 Msa1350670:CDS 40.0%
GAAGAATTATGTATGGGTGG+AGG - tig0011743:12801-12820 Msa1350670:CDS 40.0%
TCAAGAGTTGTTAAGATGCC+TGG - tig0011743:12849-12868 Msa1350670:CDS 40.0%
CAACAATGGAAACAGCAACA+TGG - tig0011743:12935-12954 Msa1350670:CDS 40.0%
AATGGAAACAGCAACATGGT+TGG - tig0011743:12939-12958 Msa1350670:CDS 40.0%
GTGTTGGAAATGGAAAAGCA+AGG - tig0011743:12964-12983 Msa1350670:CDS 40.0%
TGTCTGAAGAATCATGCTGT+AGG - tig0011743:12996-13015 Msa1350670:CDS 40.0%
!! AATCATGCTGTAGGTATTGG+TGG - tig0011743:13005-13024 Msa1350670:CDS 40.0%
! ACTCTTTTCGGTGGAAGTTA+CGG + tig0011743:13118-13137 Msa1350670:intergenic 40.0%
GAAGATGTTTCGAATCCAAG+TGG - tig0011743:13335-13354 Msa1350670:CDS 40.0%
GAAGTGGTTCAAGTAAGAAG+AGG - tig0011743:13363-13382 Msa1350670:CDS 40.0%
! GTTCAAGTAAGAAGAGGCAT+AGG - tig0011743:13369-13388 Msa1350670:CDS 40.0%
AAAATTCACGCAGGAACAGA+AGG - tig0011743:13394-13413 Msa1350670:CDS 40.0%
GGAACAGAAGGATAAGATGT+TGG - tig0011743:13406-13425 Msa1350670:CDS 40.0%
GTTGGAGTTAGCTGAGAAAT+TGG - tig0011743:13424-13443 Msa1350670:CDS 40.0%
AGTTAGCTGAGAAATTGGGT+TGG - tig0011743:13429-13448 Msa1350670:CDS 40.0%
AGCGTCATGTTCTTAAGGTT+TGG - tig0011743:13510-13529 Msa1350670:CDS 40.0%
AGAGTTGTTAAGATGCCTGG+TGG - tig0011743:12852-12871 Msa1350670:CDS 45.0%
ATGATAGGTTCAGTTCCACC+AGG + tig0011743:12870-12889 Msa1350670:intergenic 45.0%
TGGTGGAACTGAACCTATCA+TGG - tig0011743:12869-12888 Msa1350670:CDS 45.0%
AGTGGATGAGTGACCATGAT+AGG + tig0011743:12885-12904 Msa1350670:intergenic 45.0%
!! ATGGTTGGTGGTGTTGGAAA+TGG - tig0011743:12954-12973 Msa1350670:CDS 45.0%
! ATTGGTGGTCATGCTCTTGA+TGG - tig0011743:13020-13039 Msa1350670:CDS 45.0%
AAAGTTCCTTCACTTCCTGC+CGG + tig0011743:13062-13081 Msa1350670:intergenic 45.0%
CTTCCACCGAAAAGAGTCAT+CGG - tig0011743:13121-13140 Msa1350670:CDS 45.0%
! CATCTGCCGATGACTCTTTT+CGG + tig0011743:13130-13149 Msa1350670:intergenic 45.0%
TGTCAACAGAAAAGGGTCAC+CGG + tig0011743:13159-13178 Msa1350670:intergenic 45.0%
GGCTTATTATCGAACTCCAG+CGG - tig0011743:13214-13233 Msa1350670:CDS 45.0%
GCTTATTATCGAACTCCAGC+GGG - tig0011743:13215-13234 Msa1350670:CDS 45.0%
CTTATTATCGAACTCCAGCG+GGG - tig0011743:13216-13235 Msa1350670:CDS 45.0%
CTTGCTTTACCGTCAACTTC+TGG - tig0011743:13275-13294 Msa1350670:CDS 45.0%
GATGTTTCGAATCCAAGTGG+TGG - tig0011743:13338-13357 Msa1350670:CDS 45.0%
GCATAGGACAAAATTCACGC+AGG - tig0011743:13385-13404 Msa1350670:CDS 45.0%
AGAGTTGTTAAGATGCCTGG+TGG - tig0011743:12852-12871 Msa1350670:CDS 45.0%
ATGATAGGTTCAGTTCCACC+AGG + tig0011743:12870-12889 Msa1350670:intergenic 45.0%
TGGTGGAACTGAACCTATCA+TGG - tig0011743:12869-12888 Msa1350670:CDS 45.0%
AGTGGATGAGTGACCATGAT+AGG + tig0011743:12885-12904 Msa1350670:intergenic 45.0%
!! ATGGTTGGTGGTGTTGGAAA+TGG - tig0011743:12954-12973 Msa1350670:CDS 45.0%
! ATTGGTGGTCATGCTCTTGA+TGG - tig0011743:13020-13039 Msa1350670:CDS 45.0%
AAAGTTCCTTCACTTCCTGC+CGG + tig0011743:13062-13081 Msa1350670:intergenic 45.0%
CTTCCACCGAAAAGAGTCAT+CGG - tig0011743:13121-13140 Msa1350670:CDS 45.0%
! CATCTGCCGATGACTCTTTT+CGG + tig0011743:13130-13149 Msa1350670:intergenic 45.0%
TGTCAACAGAAAAGGGTCAC+CGG + tig0011743:13159-13178 Msa1350670:intergenic 45.0%
GGCTTATTATCGAACTCCAG+CGG - tig0011743:13214-13233 Msa1350670:CDS 45.0%
GCTTATTATCGAACTCCAGC+GGG - tig0011743:13215-13234 Msa1350670:CDS 45.0%
CTTATTATCGAACTCCAGCG+GGG - tig0011743:13216-13235 Msa1350670:CDS 45.0%
CTTGCTTTACCGTCAACTTC+TGG - tig0011743:13275-13294 Msa1350670:CDS 45.0%
GATGTTTCGAATCCAAGTGG+TGG - tig0011743:13338-13357 Msa1350670:CDS 45.0%
GCATAGGACAAAATTCACGC+AGG - tig0011743:13385-13404 Msa1350670:CDS 45.0%
GGAAACAGCAACATGGTTGG+TGG - tig0011743:12942-12961 Msa1350670:CDS 50.0%
!! AGCAACATGGTTGGTGGTGT+TGG - tig0011743:12948-12967 Msa1350670:CDS 50.0%
! GGTCATGCTCTTGATGGTTG+CGG - tig0011743:13026-13045 Msa1350670:CDS 50.0%
TGGTTGCGGTGAGTTTATGC+CGG - tig0011743:13040-13059 Msa1350670:CDS 50.0%
TTTATGCCGGCAGGAAGTGA+AGG - tig0011743:13053-13072 Msa1350670:CDS 50.0%
GGCAGGAAGTGAAGGAACTT+TGG - tig0011743:13061-13080 Msa1350670:CDS 50.0%
! CTTTTCGGTGGAAGTTACGG+TGG + tig0011743:13115-13134 Msa1350670:intergenic 50.0%
TCATCGGCAGATGTTACTGC+CGG - tig0011743:13137-13156 Msa1350670:CDS 50.0%
TAATAAGCCGCGAACTGTGG+AGG + tig0011743:13203-13222 Msa1350670:intergenic 50.0%
CGATAATAAGCCGCGAACTG+TGG + tig0011743:13206-13225 Msa1350670:intergenic 50.0%
GAAACATGCAAATACCCCGC+TGG + tig0011743:13233-13252 Msa1350670:intergenic 50.0%
! GCGGGGTATTTGCATGTTTC+TGG - tig0011743:13233-13252 Msa1350670:CDS 50.0%
!! TGCATGTTTCTGGACAGCAG+AGG - tig0011743:13243-13262 Msa1350670:CDS 50.0%
TTTCTGGACAGCAGAGGACT+GGG - tig0011743:13249-13268 Msa1350670:CDS 50.0%
GCTTTACCGTCAACTTCTGG+TGG - tig0011743:13278-13297 Msa1350670:CDS 50.0%
TTACCGTCAACTTCTGGTGG+CGG - tig0011743:13281-13300 Msa1350670:CDS 50.0%
GTTTCGAATCCAAGTGGTGG+TGG - tig0011743:13341-13360 Msa1350670:CDS 50.0%
!! AATCCAAGTGGTGGTGGAAG+TGG - tig0011743:13347-13366 Msa1350670:CDS 50.0%
GGAAACAGCAACATGGTTGG+TGG - tig0011743:12942-12961 Msa1350670:CDS 50.0%
!! AGCAACATGGTTGGTGGTGT+TGG - tig0011743:12948-12967 Msa1350670:CDS 50.0%
! GGTCATGCTCTTGATGGTTG+CGG - tig0011743:13026-13045 Msa1350670:CDS 50.0%
TGGTTGCGGTGAGTTTATGC+CGG - tig0011743:13040-13059 Msa1350670:CDS 50.0%
TTTATGCCGGCAGGAAGTGA+AGG - tig0011743:13053-13072 Msa1350670:CDS 50.0%
GGCAGGAAGTGAAGGAACTT+TGG - tig0011743:13061-13080 Msa1350670:CDS 50.0%
! CTTTTCGGTGGAAGTTACGG+TGG + tig0011743:13115-13134 Msa1350670:intergenic 50.0%
TCATCGGCAGATGTTACTGC+CGG - tig0011743:13137-13156 Msa1350670:CDS 50.0%
TAATAAGCCGCGAACTGTGG+AGG + tig0011743:13203-13222 Msa1350670:intergenic 50.0%
CGATAATAAGCCGCGAACTG+TGG + tig0011743:13206-13225 Msa1350670:intergenic 50.0%
GAAACATGCAAATACCCCGC+TGG + tig0011743:13233-13252 Msa1350670:intergenic 50.0%
! GCGGGGTATTTGCATGTTTC+TGG - tig0011743:13233-13252 Msa1350670:CDS 50.0%
!! TGCATGTTTCTGGACAGCAG+AGG - tig0011743:13243-13262 Msa1350670:CDS 50.0%
TTTCTGGACAGCAGAGGACT+GGG - tig0011743:13249-13268 Msa1350670:CDS 50.0%
GCTTTACCGTCAACTTCTGG+TGG - tig0011743:13278-13297 Msa1350670:CDS 50.0%
TTACCGTCAACTTCTGGTGG+CGG - tig0011743:13281-13300 Msa1350670:CDS 50.0%
GTTTCGAATCCAAGTGGTGG+TGG - tig0011743:13341-13360 Msa1350670:CDS 50.0%
!! AATCCAAGTGGTGGTGGAAG+TGG - tig0011743:13347-13366 Msa1350670:CDS 50.0%
! CTGCCGATGACTCTTTTCGG+TGG + tig0011743:13127-13146 Msa1350670:intergenic 55.0%
! GTTTCTGGACAGCAGAGGAC+TGG - tig0011743:13248-13267 Msa1350670:CDS 55.0%
! TGGAGGTACGCAGAGTACGA+GGG - tig0011743:13304-13323 Msa1350670:CDS 55.0%
GAACCACTTCCACCACCACT+TGG + tig0011743:13353-13372 Msa1350670:intergenic 55.0%
! CTGCCGATGACTCTTTTCGG+TGG + tig0011743:13127-13146 Msa1350670:intergenic 55.0%
! GTTTCTGGACAGCAGAGGAC+TGG - tig0011743:13248-13267 Msa1350670:CDS 55.0%
! TGGAGGTACGCAGAGTACGA+GGG - tig0011743:13304-13323 Msa1350670:CDS 55.0%
GAACCACTTCCACCACCACT+TGG + tig0011743:13353-13372 Msa1350670:intergenic 55.0%
TGCGGTGAGTTTATGCCGGC+AGG - tig0011743:13044-13063 Msa1350670:CDS 60.0%
!! ACTGTGGAGGAGGTGGTGGA+TGG + tig0011743:13190-13209 Msa1350670:intergenic 60.0%
ACCACCTCCTCCACAGTTCG+CGG - tig0011743:13193-13212 Msa1350670:CDS 60.0%
TAAGCCGCGAACTGTGGAGG+AGG + tig0011743:13200-13219 Msa1350670:intergenic 60.0%
CCACCGCCACCAGAAGTTGA+CGG + tig0011743:13287-13306 Msa1350670:intergenic 60.0%
!! TCAACTTCTGGTGGCGGTGG+AGG - tig0011743:13287-13306 Msa1350670:CDS 60.0%
! GTGGAGGTACGCAGAGTACG+AGG - tig0011743:13303-13322 Msa1350670:CDS 60.0%
TGCGGTGAGTTTATGCCGGC+AGG - tig0011743:13044-13063 Msa1350670:CDS 60.0%
!! ACTGTGGAGGAGGTGGTGGA+TGG + tig0011743:13190-13209 Msa1350670:intergenic 60.0%
ACCACCTCCTCCACAGTTCG+CGG - tig0011743:13193-13212 Msa1350670:CDS 60.0%
TAAGCCGCGAACTGTGGAGG+AGG + tig0011743:13200-13219 Msa1350670:intergenic 60.0%
CCACCGCCACCAGAAGTTGA+CGG + tig0011743:13287-13306 Msa1350670:intergenic 60.0%
!! TCAACTTCTGGTGGCGGTGG+AGG - tig0011743:13287-13306 Msa1350670:CDS 60.0%
! GTGGAGGTACGCAGAGTACG+AGG - tig0011743:13303-13322 Msa1350670:CDS 60.0%
GCGAACTGTGGAGGAGGTGG+TGG + tig0011743:13194-13213 Msa1350670:intergenic 65.0%
!! CCGTCAACTTCTGGTGGCGG+TGG - tig0011743:13284-13303 Msa1350670:CDS 65.0%
GCGAACTGTGGAGGAGGTGG+TGG + tig0011743:13194-13213 Msa1350670:intergenic 65.0%
!! CCGTCAACTTCTGGTGGCGG+TGG - tig0011743:13284-13303 Msa1350670:CDS 65.0%
GCCGCGAACTGTGGAGGAGG+TGG + tig0011743:13197-13216 Msa1350670:intergenic 70.0%
GCCGCGAACTGTGGAGGAGG+TGG + tig0011743:13197-13216 Msa1350670:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0011743 gene 12765 13571 12765 ID=Msa1350670;Name=Msa1350670
tig0011743 mRNA 12765 13571 12765 ID=Msa1350670-mRNA-1;Parent=Msa1350670;Name=Msa1350670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|268
tig0011743 exon 12765 13571 12765 ID=Msa1350670-mRNA-1:exon:7511;Parent=Msa1350670-mRNA-1
tig0011743 CDS 12765 13571 12765 ID=Msa1350670-mRNA-1:cds;Parent=Msa1350670-mRNA-1
Gene Sequence

>Msa1350670

ATGGATTTTGATGAAGATCAAGAAGAGGAACAAGAGGAAGAATTATGTATGGGTGGAGGAAATTACGACTCTTTACCAAACTCATCAAGAGTTGTTAAGATGCCTGGTGGAACTGAACCTATCATGGTCACTCATCCACTCAGAAACATCCTTAACAACAACAACAACAACAACAATGGAAACAGCAACATGGTTGGTGGTGTTGGAAATGGAAAAGCAAGGTATAGAGAGTGTCTGAAGAATCATGCTGTAGGTATTGGTGGTCATGCTCTTGATGGTTGCGGTGAGTTTATGCCGGCAGGAAGTGAAGGAACTTTGGAGTCACTAAAATGTGCTGCTTGTAACTGCCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGATGTTACTGCCGGTGACCCTTTTCTGTTGACACATCATCACCATCCACCACCTCCTCCACAGTTCGCGGCTTATTATCGAACTCCAGCGGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTACCGTCAACTTCTGGTGGCGGTGGAGGTACGCAGAGTACGAGGGAAGAGCTTGAAGATGTTTCGAATCCAAGTGGTGGTGGAAGTGGTTCAAGTAAGAAGAGGCATAGGACAAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGCGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGTAATGAAAGCGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG

Protein sequence

>Msa1350670

MDFDEDQEEEQEEELCMGGGNYDSLPNSSRVVKMPGGTEPIMVTHPLRNILNNNNNNNNGNSNMVGGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLESLKCAACNCHRNFHRKESSADVTAGDPFLLTHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREELEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP*