AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703720 MtrunA17_Chr8g0382151 93.464 153 10 0 1 153 1 153 5.02e-88 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703720 AT5G65220.1 61.146 157 56 2 1 152 1 157 1.41e-56 176

Find 49 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 4_4:-75751692 Msa0703720:three_prime_UTR
AATGCCATTGAAGGAGGTTT+TGG 0.286863 4_4:+75754606 None:intergenic
CTCCATCTTTAGTGAAGCTT+CGG 0.343778 4_4:-75751960 Msa0703720:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 4_4:-75754769 Msa0703720:five_prime_UTR
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 4_4:-75754455 Msa0703720:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 4_4:-75752042 Msa0703720:CDS
CCTATGTTCTTCCTGTCATA+AGG 0.377714 4_4:-75751771 Msa0703720:three_prime_UTR
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 4_4:-75754454 Msa0703720:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 4_4:+75754468 None:intergenic
TCCATCTTTAGTGAAGCTTC+GGG 0.422468 4_4:-75751959 Msa0703720:CDS
TAACCATGTCTCTATTCTTA+CGG 0.436101 4_4:+75751724 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 4_4:+75751682 None:intergenic
GCTGGAATTGTGCACGTGTT+TGG 0.452104 4_4:+75754571 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 4_4:-75751920 Msa0703720:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 4_4:-75751907 Msa0703720:exon
AAGAGGAGTTGCGCTCATAA+AGG 0.464581 4_4:-75754789 Msa0703720:five_prime_UTR
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 4_4:-75752035 Msa0703720:CDS
TCCCGAAGCTTCACTAAAGA+TGG 0.465433 4_4:+75751958 None:intergenic
GAAGCGGTGTGTTTCGTCGC+TGG 0.470689 4_4:+75754553 None:intergenic
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 4_4:+75754471 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 4_4:-75751953 Msa0703720:CDS
CAATCCAAAACCTCCTTCAA+TGG 0.490843 4_4:-75754610 Msa0703720:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.497091 4_4:-75754533 Msa0703720:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 4_4:+75754440 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 4_4:-75754763 Msa0703720:five_prime_UTR
ACGCATGCGACGGAAATCAC+TGG 0.508419 4_4:+75754381 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 4_4:+75754663 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 4_4:-75754768 Msa0703720:five_prime_UTR
CATTACGAGCGGATTTCTGA+AGG 0.525516 4_4:+75754413 None:intergenic
AGCGACGAAACACACCGCTT+CGG 0.532669 4_4:-75754551 Msa0703720:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 4_4:+75754597 None:intergenic
TCGCATGCTTACTGTAAAGC+GGG 0.554043 4_4:-75752067 Msa0703720:CDS
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 4_4:-75754374 Msa0703720:intron
AGCTTCACTAAAGATGGAGG+TGG 0.573712 4_4:+75751964 None:intergenic
CTCGCATGCTTACTGTAAAG+CGG 0.594819 4_4:-75752068 Msa0703720:CDS
CCTTATGACAGGAAGAACAT+AGG 0.601321 4_4:+75751771 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 4_4:+75754600 None:intergenic
ATCTTTAGTGAAGCTTCGGG+AGG 0.606878 4_4:-75751956 Msa0703720:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 4_4:-75752048 Msa0703720:CDS
CGAAGCTTCACTAAAGATGG+AGG 0.634671 4_4:+75751961 None:intergenic
CACCGAACAAATCAACGAAG+AGG 0.638523 4_4:-75754470 Msa0703720:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 4_4:-75752052 Msa0703720:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 4_4:-75754706 Msa0703720:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 4_4:+75754371 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 4_4:+75754402 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 4_4:-75752049 Msa0703720:CDS
CATCACAACTGAGACCGAAG+CGG 0.693580 4_4:+75754537 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 4_4:-75751727 Msa0703720:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 4_4:+75754668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCTTAATTAAATTTTA+AGG - chr4_4:75752157-75752176 Msa0703720:intron 10.0%
!!! TTTCCTAATTTTTTTTTTTT+CGG + chr4_4:75753763-75753782 None:intergenic 10.0%
!! ATTAAAACTAAAAATAAATG+GGG + chr4_4:75754254-75754273 None:intergenic 10.0%
!! AAAAAAGCAATATAATGAAA+AGG + chr4_4:75753485-75753504 None:intergenic 15.0%
!!! AATTTTTTTTTTTTCGGTTT+CGG + chr4_4:75753757-75753776 None:intergenic 15.0%
!! AAACCGAAAAAAAAAAAATT+AGG - chr4_4:75753757-75753776 Msa0703720:intron 15.0%
!! TTAAAACTAAAAATAAATGG+GGG + chr4_4:75754253-75754272 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG + chr4_4:75754281-75754300 None:intergenic 15.0%
!! TTAATACATTAGTAGAGTTA+GGG - chr4_4:75752230-75752249 Msa0703720:intron 20.0%
!! ACAATATTCAAAATTGTCAA+GGG - chr4_4:75752520-75752539 Msa0703720:intron 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG - chr4_4:75753014-75753033 Msa0703720:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG - chr4_4:75753148-75753167 Msa0703720:intron 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG - chr4_4:75753321-75753340 Msa0703720:intron 20.0%
!!! ACAACAATTGAATTTTATTG+TGG + chr4_4:75753565-75753584 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+TGG - chr4_4:75753564-75753583 Msa0703720:intron 20.0%
!! AACATACATGAAAATAGAAA+AGG + chr4_4:75753590-75753609 None:intergenic 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG - chr4_4:75753646-75753665 Msa0703720:intron 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG + chr4_4:75754090-75754109 None:intergenic 20.0%
!!! CATCTGAAGTTATTATTATT+AGG + chr4_4:75754282-75754301 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG - chr4_4:75754607-75754626 Msa0703720:CDS 20.0%
!! AAAATGATTACCTAATTTGA+AGG + chr4_4:75754765-75754784 None:intergenic 20.0%
! CTCTACTAATGTATTAAGAT+TGG + chr4_4:75752227-75752246 None:intergenic 25.0%
! CTTAATACATTAGTAGAGTT+AGG - chr4_4:75752229-75752248 Msa0703720:intron 25.0%
! TAATACATTAGTAGAGTTAG+GGG - chr4_4:75752231-75752250 Msa0703720:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG - chr4_4:75752264-75752283 Msa0703720:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG - chr4_4:75752350-75752369 Msa0703720:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG - chr4_4:75752519-75752538 Msa0703720:intron 25.0%
! CAATATTCAAAATTGTCAAG+GGG - chr4_4:75752521-75752540 Msa0703720:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG - chr4_4:75752549-75752568 Msa0703720:intron 25.0%
! ACACCAAAAATAATGCAAAT+GGG + chr4_4:75752615-75752634 None:intergenic 25.0%
! TGTCTATTATACCAAACTTT+GGG - chr4_4:75752632-75752651 Msa0703720:intron 25.0%
!! TTCAAATTTTACCCAAAGTT+TGG + chr4_4:75752646-75752665 None:intergenic 25.0%
! AAACTTTGGGTAAAATTTGA+AGG - chr4_4:75752645-75752664 Msa0703720:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG - chr4_4:75752696-75752715 Msa0703720:intron 25.0%
!! TTTCAGTTTTCTTTCTTCTT+TGG + chr4_4:75753233-75753252 None:intergenic 25.0%
! AAGAAGAAAGAAAACTGAAA+AGG - chr4_4:75753233-75753252 Msa0703720:intron 25.0%
! ATACAAATGAGTGTAAGAAT+AGG + chr4_4:75753399-75753418 None:intergenic 25.0%
! AACTCTGATAAAATGATGAT+GGG + chr4_4:75754062-75754081 None:intergenic 25.0%
!! CTCAATTCAATTTTTATTGG+TGG + chr4_4:75754091-75754110 None:intergenic 25.0%
! CACCAATAAAAATTGAATTG+AGG - chr4_4:75754089-75754108 Msa0703720:intron 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG + chr4_4:75754094-75754113 None:intergenic 25.0%
! AAAAATTGAATTGAGGAGAA+TGG - chr4_4:75754096-75754115 Msa0703720:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG - chr4_4:75754097-75754116 Msa0703720:intron 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG - chr4_4:75754163-75754182 Msa0703720:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG - chr4_4:75754196-75754215 Msa0703720:intron 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG - chr4_4:75754610-75754629 Msa0703720:CDS 25.0%
!!! GAAAGTTTTGAAGAAGAAGA+AGG + chr4_4:75751795-75751814 None:intergenic 30.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG + chr4_4:75751817-75751836 None:intergenic 30.0%
!! GTTTTGGATTGTAATGGTTT+TGG + chr4_4:75751825-75751844 None:intergenic 30.0%
CTGTGAAATTAGGAATGAAT+AGG - chr4_4:75752263-75752282 Msa0703720:intron 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG + chr4_4:75752448-75752467 None:intergenic 30.0%
GTGTGTAATATGTAAGTCAT+AGG + chr4_4:75752502-75752521 None:intergenic 30.0%
TTGCTATGTTAGAATGGAAA+TGG - chr4_4:75752555-75752574 Msa0703720:intron 30.0%
! CATCCCATTTGCATTATTTT+TGG - chr4_4:75752609-75752628 Msa0703720:intron 30.0%
GACACCAAAAATAATGCAAA+TGG + chr4_4:75752616-75752635 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+TGG - chr4_4:75752631-75752650 Msa0703720:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG - chr4_4:75752781-75752800 Msa0703720:intron 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG + chr4_4:75752855-75752874 None:intergenic 30.0%
ATTGAAATTGAACTGAAACC+AGG + chr4_4:75752929-75752948 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG - chr4_4:75752941-75752960 Msa0703720:intron 30.0%
ACATAGATTAAATCCATTGC+CGG - chr4_4:75752990-75753009 Msa0703720:intron 30.0%
AAAGATTCAAACTTAAGACC+CGG + chr4_4:75753012-75753031 None:intergenic 30.0%
! CATTAGCACTTGTTAACAAA+TGG + chr4_4:75753097-75753116 None:intergenic 30.0%
! CATTTGTTAACAAGTGCTAA+TGG - chr4_4:75753095-75753114 Msa0703720:intron 30.0%
! TCAGTTATTTCCGTTTACAT+TGG + chr4_4:75753161-75753180 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG - chr4_4:75753171-75753190 Msa0703720:intron 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG + chr4_4:75753207-75753226 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG + chr4_4:75753208-75753227 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG + chr4_4:75753209-75753228 None:intergenic 30.0%
! AAACTGAAAAGGTCAAGTTT+TGG - chr4_4:75753244-75753263 Msa0703720:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG + chr4_4:75753462-75753481 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG + chr4_4:75753465-75753484 None:intergenic 30.0%
! TGAGTAAATCGTGATTTTGA+TGG + chr4_4:75753510-75753529 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG + chr4_4:75753940-75753959 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG + chr4_4:75753985-75754004 None:intergenic 30.0%
GAACTCTGATAAAATGATGA+TGG + chr4_4:75754063-75754082 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG - chr4_4:75754169-75754188 Msa0703720:intron 30.0%
GAAATGCACACAATAGAAAA+AGG - chr4_4:75754195-75754214 Msa0703720:intron 30.0%
AATGCACACAATAGAAAAAG+GGG - chr4_4:75754197-75754216 Msa0703720:intron 30.0%
AAACTAAAAATAAATGGGGG+TGG + chr4_4:75754250-75754269 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG + chr4_4:75754439-75754458 None:intergenic 30.0%
CCAGAAAGCTTGATAAAAAA+TGG - chr4_4:75754436-75754455 Msa0703720:CDS 30.0%
GACATAAAAAACCTTATGAC+AGG + chr4_4:75754687-75754706 None:intergenic 30.0%
TAACCATGTCTCTATTCTTA+CGG + chr4_4:75754723-75754742 None:intergenic 30.0%
AGGATGAAGTGAAGTAAGAT+AGG - chr4_4:75751675-75751694 Msa0703720:three_prime_UTR 35.0%
GGATGAAGTGAAGTAAGATA+GGG - chr4_4:75751676-75751695 Msa0703720:three_prime_UTR 35.0%
AGATAAAACATAAGAGAGCG+CGG - chr4_4:75751738-75751757 Msa0703720:three_prime_UTR 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG + chr4_4:75751784-75751803 None:intergenic 35.0%
!!! AAGGAGGTTTTGGATTGTAA+TGG + chr4_4:75751831-75751850 None:intergenic 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG + chr4_4:75751979-75751998 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG - chr4_4:75752253-75752272 Msa0703720:intron 35.0%
GGTTATGTTAGAGAAACAAC+TGG - chr4_4:75752371-75752390 Msa0703720:intron 35.0%
ACAAAACCAAAGACTCACTA+GGG - chr4_4:75752453-75752472 Msa0703720:intron 35.0%
TAGAATGGAAATGGAGAGAA+AGG - chr4_4:75752564-75752583 Msa0703720:intron 35.0%
!! AAGGCATCAGGATTTTTATC+TGG - chr4_4:75752664-75752683 Msa0703720:intron 35.0%
AACATTGAAATGAAAGGCCA+AGG - chr4_4:75752702-75752721 Msa0703720:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG - chr4_4:75752703-75752722 Msa0703720:intron 35.0%
GTTAACGAATTTGAATCCCT+TGG + chr4_4:75752722-75752741 None:intergenic 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG + chr4_4:75752822-75752841 None:intergenic 35.0%
AGAAAACACCATACCTGAAA+TGG - chr4_4:75752821-75752840 Msa0703720:intron 35.0%
GAAAACACCATACCTGAAAT+GGG - chr4_4:75752822-75752841 Msa0703720:intron 35.0%
AAAACACCATACCTGAAATG+GGG - chr4_4:75752823-75752842 Msa0703720:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG + chr4_4:75752854-75752873 None:intergenic 35.0%
GAAATACCATACCTGAAAAG+TGG - chr4_4:75752854-75752873 Msa0703720:intron 35.0%
CATAGATTAAATCCATTGCC+GGG - chr4_4:75752991-75753010 Msa0703720:intron 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG - chr4_4:75753043-75753062 Msa0703720:intron 35.0%
! GACCTAAACTCTAAAGAATG+AGG + chr4_4:75753048-75753067 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG - chr4_4:75753052-75753071 Msa0703720:intron 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG + chr4_4:75753300-75753319 None:intergenic 35.0%
ACACTTGTCTACTGTTATCT+GGG + chr4_4:75753725-75753744 None:intergenic 35.0%
TACACTTGTCTACTGTTATC+TGG + chr4_4:75753726-75753745 None:intergenic 35.0%
AGATAACAGTAGACAAGTGT+AGG - chr4_4:75753725-75753744 Msa0703720:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG - chr4_4:75753726-75753745 Msa0703720:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG + chr4_4:75753812-75753831 None:intergenic 35.0%
GAAATCACTTGAGCATTTGT+GGG + chr4_4:75753813-75753832 None:intergenic 35.0%
ATGGAGACGAACATTAATGT+GGG + chr4_4:75753860-75753879 None:intergenic 35.0%
AATGGAGACGAACATTAATG+TGG + chr4_4:75753861-75753880 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG - chr4_4:75753860-75753879 Msa0703720:intron 35.0%
AAACAGAACAAGTGGCAATA+GGG + chr4_4:75753909-75753928 None:intergenic 35.0%
TGTGTTGCATAAAGTGGAAA+AGG + chr4_4:75754015-75754034 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG + chr4_4:75754183-75754202 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG - chr4_4:75754306-75754325 Msa0703720:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG + chr4_4:75754335-75754354 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG - chr4_4:75754717-75754736 Msa0703720:five_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG - chr4_4:75754752-75754771 Msa0703720:five_prime_UTR 35.0%
AAGTGAAGTAAGATAGGGTG+TGG - chr4_4:75751681-75751700 Msa0703720:three_prime_UTR 40.0%
CAATCCAAAACCTCCTTCAA+TGG - chr4_4:75751834-75751853 Msa0703720:three_prime_UTR 40.0%
! AATGCCATTGAAGGAGGTTT+TGG + chr4_4:75751841-75751860 None:intergenic 40.0%
! GATGATGGCAAAAAGAGAAG+AGG - chr4_4:75751926-75751945 Msa0703720:CDS 40.0%
GAAGAGGTTGTTGACCTTAA+GGG - chr4_4:75751990-75752009 Msa0703720:CDS 40.0%
GGACTTAAACTCATTACGAG+CGG + chr4_4:75752045-75752064 None:intergenic 40.0%
AGTGCAAGAGACTTGTGTTT+AGG - chr4_4:75752412-75752431 Msa0703720:intron 40.0%
GTGCAAGAGACTTGTGTTTA+GGG - chr4_4:75752413-75752432 Msa0703720:intron 40.0%
CACAAAACCAAAGACTCACT+AGG - chr4_4:75752452-75752471 Msa0703720:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG - chr4_4:75752569-75752588 Msa0703720:intron 40.0%
TGCAAATGGGATGTAGACAT+AGG + chr4_4:75752602-75752621 None:intergenic 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG - chr4_4:75752652-75752671 Msa0703720:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG - chr4_4:75752862-75752881 Msa0703720:intron 40.0%
TGCTAATGGCTAACATAGCT+TGG - chr4_4:75753109-75753128 Msa0703720:intron 40.0%
GCTAATGGCTAACATAGCTT+GGG - chr4_4:75753110-75753129 Msa0703720:intron 40.0%
CTAATGGCTAACATAGCTTG+GGG - chr4_4:75753111-75753130 Msa0703720:intron 40.0%
AATGTGACTATGCTCACATC+AGG - chr4_4:75753353-75753372 Msa0703720:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG + chr4_4:75753618-75753637 None:intergenic 40.0%
CAGAATATCAGTTGCATGAG+TGG + chr4_4:75753624-75753643 None:intergenic 40.0%
!! TCTGGGCTAGAGTTTTCTTT+TGG + chr4_4:75753708-75753727 None:intergenic 40.0%
GGAAATCACTTGAGCATTTG+TGG + chr4_4:75753814-75753833 None:intergenic 40.0%
AGACGAACATTAATGTGGGA+AGG + chr4_4:75753856-75753875 None:intergenic 40.0%
AACAGAACAAGTGGCAATAG+GGG + chr4_4:75753908-75753927 None:intergenic 40.0%
CAAACAGAACAAGTGGCAAT+AGG + chr4_4:75753910-75753929 None:intergenic 40.0%
! CTATTGCCACTTGTTCTGTT+TGG - chr4_4:75753908-75753927 Msa0703720:intron 40.0%
ATCCTACCAAACAGAACAAG+TGG + chr4_4:75753917-75753936 None:intergenic 40.0%
! TGTTAGTCTGTCAGTACTGA+AGG + chr4_4:75753960-75753979 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG - chr4_4:75754139-75754158 Msa0703720:intron 40.0%
GAATCACAATATCACCAAGC+TGG - chr4_4:75754223-75754242 Msa0703720:intron 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG + chr4_4:75754307-75754326 None:intergenic 40.0%
AAAAGAAGGATACCGCTTGT+TGG + chr4_4:75754321-75754340 None:intergenic 40.0%
! AACAAGCGGTATCCTTCTTT+TGG - chr4_4:75754320-75754339 Msa0703720:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG - chr4_4:75754321-75754340 Msa0703720:intron 40.0%
CTCCATCTTTAGTGAAGCTT+CGG - chr4_4:75754484-75754503 Msa0703720:CDS 40.0%
TCCATCTTTAGTGAAGCTTC+GGG - chr4_4:75754485-75754504 Msa0703720:CDS 40.0%
CCTTATGACAGGAAGAACAT+AGG + chr4_4:75754676-75754695 None:intergenic 40.0%
CCTATGTTCTTCCTGTCATA+AGG - chr4_4:75754673-75754692 Msa0703720:CDS 40.0%
AAGAGGAGTTGCGCTCATAA+AGG - chr4_4:75751655-75751674 Msa0703720:three_prime_UTR 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG + chr4_4:75751779-75751798 None:intergenic 45.0%
TAGACGAATGCCATTGAAGG+AGG + chr4_4:75751847-75751866 None:intergenic 45.0%
ACGTAGACGAATGCCATTGA+AGG + chr4_4:75751850-75751869 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG - chr4_4:75751911-75751930 Msa0703720:exon 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG + chr4_4:75751976-75751995 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG - chr4_4:75751974-75751993 Msa0703720:CDS 45.0%
CGAAGAGGTTGTTGACCTTA+AGG - chr4_4:75751989-75752008 Msa0703720:CDS 45.0%
! CATTACGAGCGGATTTCTGA+AGG + chr4_4:75752034-75752053 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG - chr4_4:75752274-75752293 Msa0703720:intron 45.0%
! ACAACTGGCTTCTTATTGCC+TGG - chr4_4:75752386-75752405 Msa0703720:intron 45.0%
AAACCAAAGACTCACTAGGG+TGG - chr4_4:75752456-75752475 Msa0703720:intron 45.0%
AACCAAAGACTCACTAGGGT+GGG - chr4_4:75752457-75752476 Msa0703720:intron 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG + chr4_4:75752863-75752882 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG - chr4_4:75752861-75752880 Msa0703720:intron 45.0%
TACCTGAAAAGTGGAGAGTG+GGG - chr4_4:75752863-75752882 Msa0703720:intron 45.0%
TCCTCCAAGCCATCTTACAA+CGG + chr4_4:75752895-75752914 None:intergenic 45.0%
GAGTCTACAAGCCATCGTAT+TGG + chr4_4:75752955-75752974 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG + chr4_4:75753006-75753025 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG + chr4_4:75753199-75753218 None:intergenic 45.0%
GTGGGGTGACTAATAACACA+GGG + chr4_4:75753795-75753814 None:intergenic 45.0%
TGTGGGGTGACTAATAACAC+AGG + chr4_4:75753796-75753815 None:intergenic 45.0%
! GGATAGATGTGTGGTGGAAT+AGG + chr4_4:75753835-75753854 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG + chr4_4:75753844-75753863 None:intergenic 45.0%
! TGCCACTTGTTCTGTTTGGT+AGG - chr4_4:75753912-75753931 Msa0703720:intron 45.0%
CATAAAGTGGAAAAGGAGCG+CGG + chr4_4:75754008-75754027 None:intergenic 45.0%
TTTATGCAACACACCCGCAT+GGG - chr4_4:75754022-75754041 Msa0703720:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG - chr4_4:75754104-75754123 Msa0703720:intron 45.0%
ATTGAGGAGAATGGGCACTA+GGG - chr4_4:75754105-75754124 Msa0703720:intron 45.0%
CTCGCATGCTTACTGTAAAG+CGG - chr4_4:75754376-75754395 Msa0703720:CDS 45.0%
TCGCATGCTTACTGTAAAGC+GGG - chr4_4:75754377-75754396 Msa0703720:CDS 45.0%
AGCTTCACTAAAGATGGAGG+TGG + chr4_4:75754483-75754502 None:intergenic 45.0%
CGAAGCTTCACTAAAGATGG+AGG + chr4_4:75754486-75754505 None:intergenic 45.0%
TCCCGAAGCTTCACTAAAGA+TGG + chr4_4:75754489-75754508 None:intergenic 45.0%
ATCTTTAGTGAAGCTTCGGG+AGG - chr4_4:75754488-75754507 Msa0703720:CDS 45.0%
!! TATTAAAACTAAAAATAAAT+GGG + chr4_4:75754255-75754274 None:intergenic 5.0%
!! ATATTAAAACTAAAAATAAA+TGG + chr4_4:75754256-75754275 None:intergenic 5.0%
GCTGGAATTGTGCACGTGTT+TGG + chr4_4:75751876-75751895 None:intergenic 50.0%
CATCACAACTGAGACCGAAG+CGG + chr4_4:75751910-75751929 None:intergenic 50.0%
GCATGAGCAACTCTCCCTTA+AGG + chr4_4:75752007-75752026 None:intergenic 50.0%
TTTCCGTCGCATGCGTAAGA+CGG - chr4_4:75752070-75752089 Msa0703720:CDS 50.0%
ATACCGTCTTACGCATGCGA+CGG + chr4_4:75752076-75752095 None:intergenic 50.0%
! CAAGTCTCTTGCACTGATCC+AGG + chr4_4:75752407-75752426 None:intergenic 50.0%
ACCAAAGACTCACTAGGGTG+GGG - chr4_4:75752458-75752477 Msa0703720:intron 50.0%
GTATTGCGGCGCATAGCAAT+TGG - chr4_4:75752795-75752814 Msa0703720:intron 50.0%
! GACTCTCCCCATTTCAGGTA+TGG + chr4_4:75752832-75752851 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG - chr4_4:75752908-75752927 Msa0703720:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG + chr4_4:75753192-75753211 None:intergenic 50.0%
ACCGAAGAACCCCAAAACAG+AGG - chr4_4:75753195-75753214 Msa0703720:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG + chr4_4:75753841-75753860 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG + chr4_4:75753879-75753898 None:intergenic 50.0%
GAACAAGTGGCAATAGGGGA+GGG + chr4_4:75753904-75753923 None:intergenic 50.0%
AGAACAAGTGGCAATAGGGG+AGG + chr4_4:75753905-75753924 None:intergenic 50.0%
TGCGGGTGTGTTGCATAAAG+TGG + chr4_4:75754021-75754040 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG - chr4_4:75754021-75754040 Msa0703720:intron 50.0%
ATGGGCACTAGGGATTCAGT+AGG - chr4_4:75754115-75754134 Msa0703720:intron 50.0%
AAAGCGGGAAAGAGAGATCG+AGG - chr4_4:75754392-75754411 Msa0703720:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG - chr4_4:75754402-75754421 Msa0703720:CDS 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG - chr4_4:75754409-75754428 Msa0703720:CDS 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG - chr4_4:75754491-75754510 Msa0703720:CDS 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG - chr4_4:75754524-75754543 Msa0703720:CDS 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG + chr4_4:75754532-75754551 None:intergenic 50.0%
AGCGACGAAACACACCGCTT+CGG - chr4_4:75751893-75751912 Msa0703720:exon 55.0%
ACGCATGCGACGGAAATCAC+TGG + chr4_4:75752066-75752085 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG + chr4_4:75752462-75752481 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG + chr4_4:75752837-75752856 None:intergenic 55.0%
!! CACCCCACTCTCCACTTTTC+AGG + chr4_4:75752868-75752887 None:intergenic 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG - chr4_4:75752866-75752885 Msa0703720:intron 55.0%
AAAAGTGGAGAGTGGGGTGG+TGG - chr4_4:75752869-75752888 Msa0703720:intron 55.0%
GTGGCCGTTGTAAGATGGCT+TGG - chr4_4:75752888-75752907 Msa0703720:intron 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG - chr4_4:75752891-75752910 Msa0703720:intron 55.0%
TGGCAATAGGGGAGGGCAAT+GGG + chr4_4:75753897-75753916 None:intergenic 55.0%
TAAATGGGGGTGGACCAGCT+TGG + chr4_4:75754240-75754259 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG - chr4_4:75754396-75754415 Msa0703720:CDS 55.0%
GCTGAAAAGGCTGCATGAGC+TGG - chr4_4:75754537-75754556 Msa0703720:CDS 55.0%
GAAGCGGTGTGTTTCGTCGC+TGG + chr4_4:75751894-75751913 None:intergenic 60.0%
! GGGTGGTGGCCGTTGTAAGA+TGG - chr4_4:75752883-75752902 Msa0703720:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG + chr4_4:75753898-75753917 None:intergenic 60.0%
ATGCAACACACCCGCATGGG+AGG - chr4_4:75754025-75754044 Msa0703720:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG - chr4_4:75754395-75754414 Msa0703720:CDS 60.0%
GGGAGGGCAATGGGAGATGC+AGG + chr4_4:75753888-75753907 None:intergenic 65.0%
CCGTCATGAGCCTCCCATGC+GGG + chr4_4:75754038-75754057 None:intergenic 65.0%
CCCGCATGGGAGGCTCATGA+CGG - chr4_4:75754035-75754054 Msa0703720:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG + chr4_4:75754039-75754058 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG - chr4_4:75754036-75754055 Msa0703720:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75751650 75754816 75751650 ID=Msa0703720;Name=Msa0703720
chr4_4 mRNA 75751650 75754816 75751650 ID=Msa0703720-mRNA-1;Parent=Msa0703720;Name=Msa0703720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=118|1|1|1|1|1|2|262|168
chr4_4 exon 75751650 75752094 75751650 ID=Msa0703720-mRNA-1:exon:23837;Parent=Msa0703720-mRNA-1
chr4_4 exon 75754375 75754816 75754375 ID=Msa0703720-mRNA-1:exon:23836;Parent=Msa0703720-mRNA-1
chr4_4 five_prime_UTR 75754699 75754816 75754699 ID=Msa0703720-mRNA-1:five_prime_utr;Parent=Msa0703720-mRNA-1
chr4_4 CDS 75754375 75754698 75754375 ID=Msa0703720-mRNA-1:cds;Parent=Msa0703720-mRNA-1
chr4_4 CDS 75751912 75752094 75751912 ID=Msa0703720-mRNA-1:cds;Parent=Msa0703720-mRNA-1
chr4_4 three_prime_UTR 75751650 75751911 75751650 ID=Msa0703720-mRNA-1:three_prime_utr;Parent=Msa0703720-mRNA-1
Gene Sequence

>Msa0703720

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAAAACTTTCCTTTCTTCCAAAACCATTACAATCCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCGCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCATGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCATCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>Msa0703720

MLNLSVTSPSSSSKLSFLPKPLQSKTSFNGIRLRQPNTCTIPATKHTASVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARMLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*