AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040800 MtrunA17_Chr7g0270351 85.195 385 4 3 74 418 1 372 0.0 658
Msa1040800 MtrunA17_Chr6g0448811 84.675 385 6 3 74 418 1 372 0.0 651
Msa1040800 MtrunA17_Chr6g0485781 85.075 67 10 0 1 67 112 178 1.85e-29 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040800 AT3G20650.2 70.526 380 60 3 74 414 1 367 0.0 524
Msa1040800 AT3G20650.1 70.341 381 60 3 74 414 1 368 0.0 523
Msa1040800 AT3G20650.3 72.521 353 44 3 74 386 1 340 1.53e-176 497
Msa1040800 AT3G52210.2 32.051 156 85 4 141 296 15 149 1.17e-15 76.6
Msa1040800 AT3G52210.1 32.051 156 85 4 141 296 15 149 2.91e-15 77.0
Msa1040800 AT3G52210.3 31.847 157 85 5 141 296 15 150 1.05e-13 72.4

Find 131 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAAGAAACTTAATAAT+TGG 0.129375 7_1:-78269513 Msa1040800:CDS
AGTTTCTTCAAATGAATTAT+TGG 0.177285 7_1:+78269523 None:intergenic
TTCTAAGAAAACCAAGTATT+TGG 0.195927 7_1:+78265078 None:intergenic
ACCAACATAATATCCAATTT+TGG 0.220790 7_1:+78269220 None:intergenic
CAAGATAGTGTGAATCTTAA+TGG 0.234630 7_1:-78270673 Msa1040800:CDS
TCAAAGTTTCCAACCGATTT+CGG 0.250010 7_1:-78270892 Msa1040800:five_prime_UTR
CGTTGTTTCGGTTGAAGAAT+TGG 0.259515 7_1:-78270869 Msa1040800:five_prime_UTR
AAATGGGACAAGGCCAAAAT+TGG 0.260483 7_1:-78269233 Msa1040800:CDS
GACTAGCTTCTCGTTCTTCC+AGG 0.267975 7_1:+78269545 None:intergenic
TTGATGAAATTAAGAGATTA+GGG 0.280557 7_1:-78270840 Msa1040800:five_prime_UTR
GTTGGTTAAGTATGTGAGTT+TGG 0.297466 7_1:-78270818 Msa1040800:five_prime_UTR
GTTGTTTCGGTTGAAGAATT+GGG 0.301340 7_1:-78270868 Msa1040800:five_prime_UTR
GAGGAGACAGTTGTTGATTC+AGG 0.304129 7_1:-78270638 Msa1040800:intron
ATTGATGAAATTAAGAGATT+AGG 0.304534 7_1:-78270841 Msa1040800:five_prime_UTR
TTAATATATTTAATCATTGT+AGG 0.310458 7_1:-78270120 Msa1040800:CDS
AACCGATTTCGGCGTTGTTT+CGG 0.312537 7_1:-78270881 Msa1040800:five_prime_UTR
ATGCGAAGACTTGGTGCGTT+GGG 0.316748 7_1:-78265615 Msa1040800:CDS
ATTTAGCACATCAAGTTCTA+TGG 0.350217 7_1:+78264925 None:intergenic
TTTAGGTGATGAAAATTTCC+TGG 0.352993 7_1:-78269635 Msa1040800:intron
TTTAAATCATCCTGCCCCTT+TGG 0.356397 7_1:-78267215 Msa1040800:CDS
TTTGAAGAAACTTAATAATT+GGG 0.358273 7_1:-78269512 Msa1040800:intron
AACCGAAACAACGCCGAAAT+CGG 0.367630 7_1:+78270879 None:intergenic
CTTCTCGTTCTTCCAGGGTC+TGG 0.389405 7_1:+78269551 None:intergenic
AAATGGTTATACCTTGATCT+TGG 0.389460 7_1:+78265583 None:intergenic
TTGGTAATCACATTGGCATC+TGG 0.392108 7_1:+78267568 None:intergenic
TGGTCCTGGCTCATACAAAT+TGG 0.400837 7_1:+78265028 None:intergenic
TGATGCTATGTTACTCTTGG+AGG 0.405385 7_1:+78271107 None:intergenic
TGTTGATGCTATGTTACTCT+TGG 0.419160 7_1:+78271104 None:intergenic
CTCATACAAATTGGCAATGC+AGG 0.422252 7_1:+78265037 None:intergenic
AATTAAGTACACGTTCCATT+TGG 0.422700 7_1:-78267192 Msa1040800:CDS
TTAATGGTTCTGTTAATTTG+AGG 0.431726 7_1:-78270657 Msa1040800:CDS
TTATATAAACAAACCGGATA+AGG 0.433394 7_1:+78269146 None:intergenic
TCGGTTGGAAACTTTGAAGC+TGG 0.447766 7_1:+78270898 None:intergenic
AATGATTTGAATACGTGAAA+GGG 0.449246 7_1:+78265829 None:intergenic
CATAACAATCTCCACATAAG+AGG 0.449338 7_1:+78268716 None:intergenic
GAATCTCCTTCAAGCTCATT+CGG 0.450708 7_1:-78270075 Msa1040800:CDS
TATGAAACGAAGCGAATTTG+TGG 0.451572 7_1:-78265643 Msa1040800:CDS
GTCGGCATCACCATTGTAAC+GGG 0.454883 7_1:+78268777 None:intergenic
GTTTGGATATGAGTTATAAG+AGG 0.457971 7_1:-78270801 Msa1040800:exon
TATGTCATTTGTATTGAGAA+AGG 0.459265 7_1:-78265307 Msa1040800:intron
GTTCCGATGAAAACGCCTCC+TGG 0.462802 7_1:+78267595 None:intergenic
TGAAAGGGGACAATCCATTC+AGG 0.468444 7_1:+78265844 None:intergenic
TCTTTGTGCTTTCATCCTCC+AGG 0.469364 7_1:+78269617 None:intergenic
AGGGTGGTGATCTTATCAAA+TGG 0.469444 7_1:-78269250 Msa1040800:CDS
GCCAAAATTGGATATTATGT+TGG 0.475736 7_1:-78269221 Msa1040800:CDS
TCGAGGGTTGATGCATATTA+CGG 0.477216 7_1:-78265149 Msa1040800:CDS
CATGCGAAGACTTGGTGCGT+TGG 0.480008 7_1:-78265616 Msa1040800:CDS
AGTTTGCATTGCATTACTCC+TGG 0.484761 7_1:-78267672 Msa1040800:CDS
GAGGAAGACATAACGTATAT+CGG 0.489287 7_1:-78265127 Msa1040800:CDS
TGAAATTAAGAGATTAGGGT+TGG 0.489671 7_1:-78270836 Msa1040800:five_prime_UTR
ACTTCTTACGTCGCTGATGA+TGG 0.490858 7_1:+78268755 None:intergenic
TTTGGATATGAGTTATAAGA+GGG 0.493765 7_1:-78270800 Msa1040800:exon
TTTCCTGCTCGCCTCTTATG+TGG 0.496614 7_1:-78268727 Msa1040800:CDS
AAAGAAACCATACCTCCAAA+TGG 0.497899 7_1:+78267177 None:intergenic
TTTACAATTTCAGGTTCGCT+TGG 0.500503 7_1:-78268194 Msa1040800:intron
TGAGATAAAGTGAAAAGAAA+GGG 0.502928 7_1:-78264774 Msa1040800:intron
TTGTTTCGGTTGAAGAATTG+GGG 0.504053 7_1:-78270867 Msa1040800:five_prime_UTR
AACGTGTACTTAATTCCAAA+GGG 0.507617 7_1:+78267200 None:intergenic
CGTGAGTGGGAGGCTGCAGC+CGG 0.508195 7_1:+78271153 None:intergenic
ATACCTTGAGAATTATGTCT+AGG 0.509978 7_1:+78270036 None:intergenic
CTGAGATAAAGTGAAAAGAA+AGG 0.511122 7_1:-78264775 Msa1040800:intron
GAAACAACGCCGAAATCGGT+TGG 0.516172 7_1:+78270883 None:intergenic
TCGTTCTTCCAGGGTCTGGT+TGG 0.518995 7_1:+78269555 None:intergenic
TATCAAATTAGACATTCCCT+TGG 0.519314 7_1:+78264870 None:intergenic
ATTCAAATCATTAGCTGAAG+AGG 0.520289 7_1:-78265818 Msa1040800:intron
GGGTGGTGATCTTATCAAAT+GGG 0.522492 7_1:-78269249 Msa1040800:CDS
TAAGTACACGTTCCATTTGG+AGG 0.523114 7_1:-78267189 Msa1040800:intron
TGCGAAGACTTGGTGCGTTG+GGG 0.524313 7_1:-78265614 Msa1040800:CDS
GTGTCAGCTTTACTTCGTCC+AGG 0.525304 7_1:-78267613 Msa1040800:CDS
ATGAGCTTGAAGGAGATTCT+CGG 0.525370 7_1:+78270079 None:intergenic
TGGCAACTACAGATATCAAA+AGG 0.525481 7_1:+78268148 None:intergenic
AGGCTGCAGCCGGTGAGTAG+TGG 0.526790 7_1:+78271163 None:intergenic
GGTTGACCGAATGAGCTTGA+AGG 0.527521 7_1:+78270069 None:intergenic
ACGCTGTTGATTGTCCTGAA+TGG 0.528292 7_1:-78265858 Msa1040800:CDS
CTTATGTGGAGATTGTTATG+AGG 0.530502 7_1:-78268713 Msa1040800:intron
GTAGTGGCGGAGAGCGGTAG+AGG 0.532342 7_1:+78271179 None:intergenic
ATTGCCAATTTGTATGAGCC+AGG 0.533572 7_1:-78265032 Msa1040800:three_prime_UTR
ACTAGCTTCTCGTTCTTCCA+GGG 0.536828 7_1:+78269546 None:intergenic
TTATGTCTAGGTTTAGAATG+AGG 0.541161 7_1:+78270048 None:intergenic
TAATGATTTGAATACGTGAA+AGG 0.544879 7_1:+78265828 None:intergenic
AGCACGTGCCTCTGTAGACC+AGG 0.549830 7_1:+78267654 None:intergenic
TCTCCACATAAGAGGCGAGC+AGG 0.550447 7_1:+78268724 None:intergenic
GGGGATGGCAACCAAGATCA+AGG 0.551349 7_1:-78265594 Msa1040800:intron
GTACTTAATTCCAAAGGGGC+AGG 0.552286 7_1:+78267205 None:intergenic
GTGGACCTCATGCGAAGACT+TGG 0.557650 7_1:-78265624 Msa1040800:CDS
CTGCAGCCGGTGAGTAGTGG+CGG 0.559368 7_1:+78271166 None:intergenic
CGCTTCGTTTCATATACTCG+TGG 0.561057 7_1:+78265652 None:intergenic
CAACAAGATGGTGAGATGAA+TGG 0.565060 7_1:+78265008 None:intergenic
TGCAAGGTCCAACCAGACCC+TGG 0.566903 7_1:-78269563 Msa1040800:CDS
CGCTCTCCGCCACTACTCAC+CGG 0.570585 7_1:-78271172 Msa1040800:five_prime_UTR
GGTCGGCATCACCATTGTAA+CGG 0.581927 7_1:+78268776 None:intergenic
GCAAACACAAACTAATGCCA+AGG 0.583431 7_1:-78264887 Msa1040800:three_prime_UTR
AAACCTAGACATAATTCTCA+AGG 0.589500 7_1:-78270039 Msa1040800:intron
GTTGGTATTGACATTGCTGA+AGG 0.591385 7_1:-78269203 Msa1040800:CDS
GAACGTGTACTTAATTCCAA+AGG 0.596850 7_1:+78267199 None:intergenic
GGCTTGTTGAATGATAAAGT+TGG 0.600158 7_1:-78270778 Msa1040800:CDS
TAGCTGATCATTATAGTGCA+AGG 0.603549 7_1:-78269579 Msa1040800:CDS
GAGAAAGAAGTAACGTGAGT+GGG 0.605783 7_1:+78271140 None:intergenic
ACTTGACCTTGCCTGTGGCA+AGG 0.605847 7_1:-78269358 Msa1040800:intron
CACCTACCTTGCCACAGGCA+AGG 0.606828 7_1:+78269352 None:intergenic
GATGGTGAGATGAATGGTCC+TGG 0.607499 7_1:+78265014 None:intergenic
GGTCAAGTACTGCATCTCCT+CGG 0.609821 7_1:+78269373 None:intergenic
CATCACCATTGTAACGGGTA+CGG 0.610295 7_1:+78268782 None:intergenic
GGTCTACAGAGGCACGTGCT+CGG 0.612151 7_1:-78267651 Msa1040800:CDS
ATTCAACTCTATGCTTGCCG+AGG 0.615145 7_1:-78269390 Msa1040800:CDS
GATTGCCGTACCCGTTACAA+TGG 0.617871 7_1:-78268787 Msa1040800:CDS
ATTAACACCTACCTTGCCAC+AGG 0.622621 7_1:+78269347 None:intergenic
ATGATTTGAATACGTGAAAG+GGG 0.623013 7_1:+78265830 None:intergenic
ACGCACCAAGTCTTCGCATG+AGG 0.633716 7_1:+78265619 None:intergenic
CGGTGAGTAGTGGCGGAGAG+CGG 0.634873 7_1:+78271173 None:intergenic
CTTACGTCGCTGATGATGGT+CGG 0.636950 7_1:+78268759 None:intergenic
AAAGCACAAAGAATTACGCT+CGG 0.638086 7_1:-78269606 Msa1040800:CDS
GCGAAGACTTGGTGCGTTGG+GGG 0.643362 7_1:-78265613 Msa1040800:CDS
TGTTTCGGTTGAAGAATTGG+GGG 0.644584 7_1:-78270866 Msa1040800:five_prime_UTR
AAAGAAGTAACGTGAGTGGG+AGG 0.648476 7_1:+78271143 None:intergenic
TAGTGGCGGAGAGCGGTAGA+GGG 0.651796 7_1:+78271180 None:intergenic
TGATCTTATCAAATGGGACA+AGG 0.654530 7_1:-78269243 Msa1040800:CDS
TCGCTTGGACAAAGTTCTCG+CGG 0.655108 7_1:-78268179 Msa1040800:CDS
TTGGATATGAGTTATAAGAG+GGG 0.659727 7_1:-78270799 Msa1040800:exon
CAAACACAAACTAATGCCAA+GGG 0.669831 7_1:-78264886 Msa1040800:three_prime_UTR
TGAGAAAGAAGTAACGTGAG+TGG 0.670502 7_1:+78271139 None:intergenic
GTGAGTGGCAGAAAAGATCG+AGG 0.673134 7_1:-78265166 Msa1040800:CDS
TGAGTGGCAGAAAAGATCGA+GGG 0.675804 7_1:-78265165 Msa1040800:CDS
AGGTGATGAAAATTTCCTGG+AGG 0.676429 7_1:-78269632 Msa1040800:CDS
TCAGCTTTACTTCGTCCAGG+AGG 0.689231 7_1:-78267610 Msa1040800:CDS
GCAGTACTTGACCTTGCCTG+TGG 0.689377 7_1:-78269363 Msa1040800:CDS
GCATTACTCCTGGTCTACAG+AGG 0.699463 7_1:-78267662 Msa1040800:CDS
GAGTAACATAGCATCAACAC+AGG 0.702483 7_1:-78271100 Msa1040800:intron
AGGGTTGATGCATATTACGG+AGG 0.716621 7_1:-78265146 Msa1040800:CDS
ATTGTAGGTCTTATGAAACG+AGG 0.724380 7_1:-78270105 Msa1040800:CDS
ACGTGTACTTAATTCCAAAG+GGG 0.740982 7_1:+78267201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATTTAATCATTGT+AGG - chr7_1:78265889-78265908 Msa1040800:intron 10.0%
!!! ATTTAAAAGTTATAATTTTC+TGG + chr7_1:78267709-78267728 None:intergenic 10.0%
!! ATCAAGAATATAAATATAAA+TGG + chr7_1:78268136-78268155 None:intergenic 10.0%
!! AAATAATATAAAAAATAGCT+AGG + chr7_1:78269342-78269361 None:intergenic 10.0%
!!! ATTTTGAAGTTTATTTTTTA+CGG + chr7_1:78269422-78269441 None:intergenic 10.0%
!!! TTTATTTTAGAAACTAATTT+TGG + chr7_1:78269564-78269583 None:intergenic 10.0%
!! TTTATATAGTAAAAAAATAG+GGG + chr7_1:78269675-78269694 None:intergenic 10.0%
!! GATTTATATAGTAAAAAAAT+AGG + chr7_1:78269677-78269696 None:intergenic 10.0%
!!! ATGATATTGATTTATTTTTT+TGG + chr7_1:78269923-78269942 None:intergenic 10.0%
!!! TCAATATCATTAATTTATTT+TGG - chr7_1:78269933-78269952 Msa1040800:intron 10.0%
!!! CAATATCATTAATTTATTTT+GGG - chr7_1:78269934-78269953 Msa1040800:intron 10.0%
!! TATAAATTATTGACATATAA+CGG + chr7_1:78270616-78270635 None:intergenic 10.0%
!! ATTTGAAGAAACTTAATAAT+TGG - chr7_1:78266496-78266515 Msa1040800:intron 15.0%
!! TTTGAAGAAACTTAATAATT+GGG - chr7_1:78266497-78266516 Msa1040800:intron 15.0%
!!! AAAATCTTTAATTTTATGCT+TGG - chr7_1:78267337-78267356 Msa1040800:intron 15.0%
!!! GTTGATTTGTAAAATAAAAT+AGG - chr7_1:78269213-78269232 Msa1040800:CDS 15.0%
!!! TTATGAATTTTTTATTTGCT+GGG + chr7_1:78269391-78269410 None:intergenic 15.0%
!! TTATATAGTAAAAAAATAGG+GGG + chr7_1:78269674-78269693 None:intergenic 15.0%
!! TCATAAATCAAAATAGAATT+TGG + chr7_1:78269774-78269793 None:intergenic 15.0%
!! TGATGTTTAATAAAGTTTAA+TGG + chr7_1:78270473-78270492 None:intergenic 15.0%
!! GTTATATGTCAATAATTTAT+AGG - chr7_1:78270615-78270634 Msa1040800:intron 15.0%
!!! AAAATTTTGTTGAATTTTGT+AGG - chr7_1:78271030-78271049 Msa1040800:intron 15.0%
!! AAAAAAAAATGATACATGCA+GGG + chr7_1:78265016-78265035 None:intergenic 20.0%
!! AAAAAAAAAATGATACATGC+AGG + chr7_1:78265017-78265036 None:intergenic 20.0%
!! ATTGATGAAATTAAGAGATT+AGG - chr7_1:78265168-78265187 Msa1040800:CDS 20.0%
!! TTGATGAAATTAAGAGATTA+GGG - chr7_1:78265169-78265188 Msa1040800:CDS 20.0%
!!! AGGTTGATTTTTTTTTGTTT+TGG - chr7_1:78265391-78265410 Msa1040800:intron 20.0%
!! TTTCAATCATAATGACAATA+AGG + chr7_1:78265481-78265500 None:intergenic 20.0%
!! TTACATTCAATTATGTCATT+TGG - chr7_1:78265531-78265550 Msa1040800:intron 20.0%
!!! TACATTCAATTATGTCATTT+GGG - chr7_1:78265532-78265551 Msa1040800:intron 20.0%
!! AGTTTCTTCAAATGAATTAT+TGG + chr7_1:78266489-78266508 None:intergenic 20.0%
!!! CATTTCTAGATAACAAATTA+CGG - chr7_1:78266950-78266969 Msa1040800:intron 20.0%
!! ATAATAGAATGGAAAATACA+GGG + chr7_1:78266993-78267012 None:intergenic 20.0%
!! AATAATAGAATGGAAAATAC+AGG + chr7_1:78266994-78267013 None:intergenic 20.0%
!!! AGACTTGTTAAATAATAGAA+TGG + chr7_1:78267004-78267023 None:intergenic 20.0%
!! GGATATTTAACAAGAAAATA+TGG + chr7_1:78267998-78268017 None:intergenic 20.0%
!! GATTTGTAAAATAAAATAGG+TGG - chr7_1:78269216-78269235 Msa1040800:CDS 20.0%
!! GTTATGAAATGAAAATGTAA+AGG + chr7_1:78269369-78269388 None:intergenic 20.0%
!!! GTTATGAATTTTTTATTTGC+TGG + chr7_1:78269392-78269411 None:intergenic 20.0%
!!! AACTAATTTTGGTATGTATT+CGG + chr7_1:78269553-78269572 None:intergenic 20.0%
!! TATATAGTAAAAAAATAGGG+GGG + chr7_1:78269673-78269692 None:intergenic 20.0%
!!! GGCATAAGTTTTAAAAATAA+GGG + chr7_1:78270101-78270120 None:intergenic 20.0%
!!! ATTTTAGTTTTAGAAGTTGA+AGG + chr7_1:78270261-78270280 None:intergenic 20.0%
!!! CGATTTTTTCAAATTATTAC+CGG - chr7_1:78270561-78270580 Msa1040800:intron 20.0%
!! AATCTCTATTGTGCATTTTT+AGG - chr7_1:78264949-78264968 Msa1040800:three_prime_UTR 25.0%
!! ATCTCTATTGTGCATTTTTA+GGG - chr7_1:78264950-78264969 Msa1040800:three_prime_UTR 25.0%
!!! TGTATACCATTGATTCATAA+AGG - chr7_1:78265058-78265077 Msa1040800:three_prime_UTR 25.0%
! TTTGAACCTTTATGAATCAA+TGG + chr7_1:78265067-78265086 None:intergenic 25.0%
! TTTGGATATGAGTTATAAGA+GGG - chr7_1:78265209-78265228 Msa1040800:intron 25.0%
!!! AAAGTTGGTTCCTTTTTTAA+TGG - chr7_1:78265246-78265265 Msa1040800:intron 25.0%
!!! AAGTTGGTTCCTTTTTTAAT+GGG - chr7_1:78265247-78265266 Msa1040800:intron 25.0%
!! TTAATGGTTCTGTTAATTTG+AGG - chr7_1:78265352-78265371 Msa1040800:intron 25.0%
!!! TTTGTTTTGGTTTATGTTGT+TGG - chr7_1:78265404-78265423 Msa1040800:intron 25.0%
!!! TTGTTTTGGTTTATGTTGTT+GGG - chr7_1:78265405-78265424 Msa1040800:intron 25.0%
! TAATGACAATAAGGACAATA+AGG + chr7_1:78265472-78265491 None:intergenic 25.0%
!! AATCTCTATTGTGCATTTTT+AGG - chr7_1:78264949-78264968 Msa1040800:three_prime_UTR 25.0%
!! ATCTCTATTGTGCATTTTTA+GGG - chr7_1:78264950-78264969 Msa1040800:three_prime_UTR 25.0%
! ACAACTATAGTAGCAAAAAT+GGG + chr7_1:78266013-78266032 None:intergenic 25.0%
! AACAACTATAGTAGCAAAAA+TGG + chr7_1:78266014-78266033 None:intergenic 25.0%
! TATATCAAAGTTCACCTAAT+TGG - chr7_1:78266078-78266097 Msa1040800:intron 25.0%
! ATATCAAAGTTCACCTAATT+GGG - chr7_1:78266079-78266098 Msa1040800:intron 25.0%
!! CTTTCTAGTATTTCAAATAG+TGG + chr7_1:78266236-78266255 None:intergenic 25.0%
! CATACTACAAATATGGTAAT+TGG + chr7_1:78266307-78266326 None:intergenic 25.0%
! TTAAAAAAATCATGTGACAC+TGG + chr7_1:78266559-78266578 None:intergenic 25.0%
!! TTTCAGCTCTTGTTTATATA+CGG - chr7_1:78266688-78266707 Msa1040800:intron 25.0%
! TGGTGAAAAGAAAAAATGAA+AGG + chr7_1:78266740-78266759 None:intergenic 25.0%
!!! TTTCATTTTTTCTTTTCACC+AGG - chr7_1:78266739-78266758 Msa1040800:intron 25.0%
!!! TTCATTTTTTCTTTTCACCA+GGG - chr7_1:78266740-78266759 Msa1040800:intron 25.0%
!! ACCAACATAATATCCAATTT+TGG + chr7_1:78266792-78266811 None:intergenic 25.0%
!! AGTGTTAAAATTTTCTGTAC+TGG - chr7_1:78266836-78266855 Msa1040800:intron 25.0%
! TTATATAAACAAACCGGATA+AGG + chr7_1:78266866-78266885 None:intergenic 25.0%
! AAGTGGTTATATAAACAAAC+CGG + chr7_1:78266872-78266891 None:intergenic 25.0%
! ACAATGTTTCACTAGAATTA+GGG + chr7_1:78267128-78267147 None:intergenic 25.0%
! AACAATGTTTCACTAGAATT+AGG + chr7_1:78267129-78267148 None:intergenic 25.0%
! TTACAGTTAACATTTAGTCT+CGG - chr7_1:78267372-78267391 Msa1040800:intron 25.0%
! GAAGATATTGCAAAAATAGA+TGG - chr7_1:78267458-78267477 Msa1040800:intron 25.0%
!! TTCATGTCATTTACAATTTC+AGG - chr7_1:78267806-78267825 Msa1040800:intron 25.0%
! CGTTTCTTTCATTTGTATTA+GGG + chr7_1:78268091-78268110 None:intergenic 25.0%
! ACGTTTCTTTCATTTGTATT+AGG + chr7_1:78268092-78268111 None:intergenic 25.0%
! AATCACAATGTAACTAAATG+AGG + chr7_1:78268575-78268594 None:intergenic 25.0%
! TTGTTTGAAAACAAATCTGA+TGG - chr7_1:78268599-78268618 Msa1040800:intron 25.0%
! CCAATCAGTTATGTATTATA+GGG + chr7_1:78268897-78268916 None:intergenic 25.0%
! CCTATAATACATAACTGATT+GGG - chr7_1:78268895-78268914 Msa1040800:intron 25.0%
! TTAATACGTAAGAATTCTTG+TGG + chr7_1:78268954-78268973 None:intergenic 25.0%
!! TCTTTTGCTCATTTTAAACT+AGG - chr7_1:78269149-78269168 Msa1040800:intron 25.0%
!! GTCAAACTTAAACTTTTAGT+TGG + chr7_1:78269272-78269291 None:intergenic 25.0%
! ATATAGTAAAAAAATAGGGG+GGG + chr7_1:78269672-78269691 None:intergenic 25.0%
!!! GGGCATAAGTTTTAAAAATA+AGG + chr7_1:78270102-78270121 None:intergenic 25.0%
! AAAAGGTAATGTCTTAAATG+GGG + chr7_1:78270123-78270142 None:intergenic 25.0%
! CAAAAGGTAATGTCTTAAAT+GGG + chr7_1:78270124-78270143 None:intergenic 25.0%
! ACAAAAGGTAATGTCTTAAA+TGG + chr7_1:78270125-78270144 None:intergenic 25.0%
! AATGATTTGAATACGTGAAA+GGG + chr7_1:78270183-78270202 None:intergenic 25.0%
! TAATGATTTGAATACGTGAA+AGG + chr7_1:78270184-78270203 None:intergenic 25.0%
!! AAGAGACATATTTCTTTTTC+AGG - chr7_1:78270640-78270659 Msa1040800:CDS 25.0%
!!! AGAGACATATTTCTTTTTCA+GGG - chr7_1:78270641-78270660 Msa1040800:CDS 25.0%
!! TATGTCATTTGTATTGAGAA+AGG - chr7_1:78270702-78270721 Msa1040800:CDS 25.0%
! TTTAACATTTGTCAACTTGT+TGG - chr7_1:78270767-78270786 Msa1040800:CDS 25.0%
! GCTAAAAAAAACCAAATACT+TGG - chr7_1:78270920-78270939 Msa1040800:intron 25.0%
!! TTCTAAGAAAACCAAGTATT+TGG + chr7_1:78270934-78270953 None:intergenic 25.0%
!!! AAATACTTGGTTTTCTTAGA+AGG - chr7_1:78270933-78270952 Msa1040800:intron 25.0%
! TGAGATAAAGTGAAAAGAAA+GGG - chr7_1:78271235-78271254 Msa1040800:five_prime_UTR 25.0%
!!! GTAGAGGGTATCTTTTTTTA+CGG + chr7_1:78264817-78264836 None:intergenic 30.0%
!!! TTGTGCATTTTTAGGGTTTT+TGG - chr7_1:78264957-78264976 Msa1040800:three_prime_UTR 30.0%
!!! ACATGCAGGGTTTTAAATAA+AGG + chr7_1:78265003-78265022 None:intergenic 30.0%
TGAAATTAAGAGATTAGGGT+TGG - chr7_1:78265173-78265192 Msa1040800:CDS 30.0%
GTTTGGATATGAGTTATAAG+AGG - chr7_1:78265208-78265227 Msa1040800:intron 30.0%
TTGGATATGAGTTATAAGAG+GGG - chr7_1:78265210-78265229 Msa1040800:intron 30.0%
!!! AGTTGGTTCCTTTTTTAATG+GGG - chr7_1:78265248-78265267 Msa1040800:intron 30.0%
! CTTTTTACCCCCATTAAAAA+AGG + chr7_1:78265259-78265278 None:intergenic 30.0%
! TACAAAGATGTCTTTTTGTG+AGG - chr7_1:78265293-78265312 Msa1040800:intron 30.0%
CAAGATAGTGTGAATCTTAA+TGG - chr7_1:78265336-78265355 Msa1040800:intron 30.0%
TTCTGTCATATTTCTCACAA+GGG + chr7_1:78265604-78265623 None:intergenic 30.0%
TTTCTGTCATATTTCTCACA+AGG + chr7_1:78265605-78265624 None:intergenic 30.0%
ATAACTAAGTTTGAGCAAGT+AGG - chr7_1:78265644-78265663 Msa1040800:CDS 30.0%
!!! TTCCATTTTTGAGACAATCA+GGG + chr7_1:78265691-78265710 None:intergenic 30.0%
!!! TTTCCATTTTTGAGACAATC+AGG + chr7_1:78265692-78265711 None:intergenic 30.0%
!!! TTGTGCATTTTTAGGGTTTT+TGG - chr7_1:78264957-78264976 Msa1040800:three_prime_UTR 30.0%
! TTATGTCTAGGTTTAGAATG+AGG + chr7_1:78265964-78265983 None:intergenic 30.0%
AAACCTAGACATAATTCTCA+AGG - chr7_1:78265970-78265989 Msa1040800:intron 30.0%
ATACCTTGAGAATTATGTCT+AGG + chr7_1:78265976-78265995 None:intergenic 30.0%
TCAAATAGTGGTAGCAATAA+CGG + chr7_1:78266224-78266243 None:intergenic 30.0%
AAGCACACATACTACAAATA+TGG + chr7_1:78266314-78266333 None:intergenic 30.0%
! TGCTTTTCTTTCCTTTTTTC+CGG - chr7_1:78266329-78266348 Msa1040800:intron 30.0%
TTTAGGTGATGAAAATTTCC+TGG - chr7_1:78266374-78266393 Msa1040800:intron 30.0%
GCCAAAATTGGATATTATGT+TGG - chr7_1:78266788-78266807 Msa1040800:intron 30.0%
TTAGTATGATTTGATGGAAG+TGG + chr7_1:78266889-78266908 None:intergenic 30.0%
TGCATGTTAGTATGATTTGA+TGG + chr7_1:78266895-78266914 None:intergenic 30.0%
AAAATACAGGGTTCAGTTAA+AGG + chr7_1:78266981-78267000 None:intergenic 30.0%
! AATTTTTATGTCCTTGCTAG+TGG - chr7_1:78267074-78267093 Msa1040800:intron 30.0%
TTAGGGGAATATAGTTACAT+TGG + chr7_1:78267111-78267130 None:intergenic 30.0%
CAATGTTTCACTAGAATTAG+GGG + chr7_1:78267127-78267146 None:intergenic 30.0%
GCAAATAGCTTGGAAAAATA+AGG + chr7_1:78267154-78267173 None:intergenic 30.0%
TCATAGACATTCACAATCTT+TGG - chr7_1:78267407-78267426 Msa1040800:intron 30.0%
TCTTTGGCAACAAATTGAAA+AGG - chr7_1:78267423-78267442 Msa1040800:intron 30.0%
CTTTGGCAACAAATTGAAAA+GGG - chr7_1:78267424-78267443 Msa1040800:intron 30.0%
TTTGAGGAGAATGAATTTGA+CGG + chr7_1:78267512-78267531 None:intergenic 30.0%
!! TTTTGTATAGAGTGGTTTTG+AGG + chr7_1:78267528-78267547 None:intergenic 30.0%
! TACGATCATTTTGTATAGAG+TGG + chr7_1:78267536-78267555 None:intergenic 30.0%
AAATGATCGTAAATGTGCAT+TGG - chr7_1:78267545-78267564 Msa1040800:intron 30.0%
AAAAGAGTCCATTATTTACC+TGG + chr7_1:78267884-78267903 None:intergenic 30.0%
TGCAATAAAAGAAATGCGTA+CGG + chr7_1:78268019-78268038 None:intergenic 30.0%
AGAATGTAAACGAAACAGTA+TGG + chr7_1:78268234-78268253 None:intergenic 30.0%
TCTGAATCACATGACAAATT+TGG + chr7_1:78268772-78268791 None:intergenic 30.0%
AACGTGTACTTAATTCCAAA+GGG + chr7_1:78268812-78268831 None:intergenic 30.0%
AATTAAGTACACGTTCCATT+TGG - chr7_1:78268817-78268836 Msa1040800:intron 30.0%
CCCTATAATACATAACTGAT+TGG - chr7_1:78268894-78268913 Msa1040800:intron 30.0%
CCCAATCAGTTATGTATTAT+AGG + chr7_1:78268898-78268917 None:intergenic 30.0%
AAATGAGCAAAAGAGCAAAA+TGG + chr7_1:78269143-78269162 None:intergenic 30.0%
AGTTCATGTCATATTTGTAC+CGG - chr7_1:78269489-78269508 Msa1040800:intron 30.0%
TATAGTAAAAAAATAGGGGG+GGG + chr7_1:78269671-78269690 None:intergenic 30.0%
AAAGGTAATGTCTTAAATGG+GGG + chr7_1:78270122-78270141 None:intergenic 30.0%
!! AAGACATTACCTTTTGTTGT+AGG - chr7_1:78270128-78270147 Msa1040800:CDS 30.0%
ATGATTTGAATACGTGAAAG+GGG + chr7_1:78270182-78270201 None:intergenic 30.0%
ATTCAAATCATTAGCTGAAG+AGG - chr7_1:78270191-78270210 Msa1040800:intron 30.0%
!!! TAGTTTTAGAAGTTGAAGGT+GGG + chr7_1:78270257-78270276 None:intergenic 30.0%
!!! TTAGTTTTAGAAGTTGAAGG+TGG + chr7_1:78270258-78270277 None:intergenic 30.0%
AAATGGTTATACCTTGATCT+TGG + chr7_1:78270429-78270448 None:intergenic 30.0%
! TGAAAAAGCATAAGCACAAA+TGG + chr7_1:78270446-78270465 None:intergenic 30.0%
! AATTTTGCTAGACAACAAGA+TGG + chr7_1:78271016-78271035 None:intergenic 30.0%
ATTTAGCACATCAAGTTCTA+TGG + chr7_1:78271087-78271106 None:intergenic 30.0%
TATCAAATTAGACATTCCCT+TGG + chr7_1:78271142-78271161 None:intergenic 30.0%
CTGAGATAAAGTGAAAAGAA+AGG - chr7_1:78271234-78271253 Msa1040800:five_prime_UTR 30.0%
TGTTGATGCTATGTTACTCT+TGG + chr7_1:78264908-78264927 None:intergenic 35.0%
! TCAAAGTTTCCAACCGATTT+CGG - chr7_1:78265117-78265136 Msa1040800:CDS 35.0%
! GTTGTTTCGGTTGAAGAATT+GGG - chr7_1:78265141-78265160 Msa1040800:CDS 35.0%
TTGTTTCGGTTGAAGAATTG+GGG - chr7_1:78265142-78265161 Msa1040800:CDS 35.0%
GTTGGTTAAGTATGTGAGTT+TGG - chr7_1:78265191-78265210 Msa1040800:CDS 35.0%
!! GGCTTGTTGAATGATAAAGT+TGG - chr7_1:78265231-78265250 Msa1040800:intron 35.0%
!!! GTTGGTTCCTTTTTTAATGG+GGG - chr7_1:78265249-78265268 Msa1040800:intron 35.0%
GAGATAATTGTTGACAACCA+CGG + chr7_1:78265574-78265593 None:intergenic 35.0%
TACCCTGATTGTCTCAAAAA+TGG - chr7_1:78265686-78265705 Msa1040800:CDS 35.0%
! ATTGTAGGTCTTATGAAACG+AGG - chr7_1:78265904-78265923 Msa1040800:intron 35.0%
ACTATAGTAGCAAAAATGGG+AGG + chr7_1:78266010-78266029 None:intergenic 35.0%
AAACGATATGCTACCCAATT+AGG + chr7_1:78266095-78266114 None:intergenic 35.0%
! GCTTTTCTTTCCTTTTTTCC+GGG - chr7_1:78266330-78266349 Msa1040800:intron 35.0%
AAAGCACAAAGAATTACGCT+CGG - chr7_1:78266403-78266422 Msa1040800:intron 35.0%
TAGCTGATCATTATAGTGCA+AGG - chr7_1:78266430-78266449 Msa1040800:intron 35.0%
!!! ATTTTTTCTTTTCACCAGGG+TGG - chr7_1:78266743-78266762 Msa1040800:intron 35.0%
TGATCTTATCAAATGGGACA+AGG - chr7_1:78266766-78266785 Msa1040800:intron 35.0%
AGACTACAAATGTATGGCAA+TGG + chr7_1:78267176-78267195 None:intergenic 35.0%
GAGCTTAGACTACAAATGTA+TGG + chr7_1:78267182-78267201 None:intergenic 35.0%
CATAACAATCTCCACATAAG+AGG + chr7_1:78267296-78267315 None:intergenic 35.0%
CTTATGTGGAGATTGTTATG+AGG - chr7_1:78267296-78267315 Msa1040800:intron 35.0%
!! AGATTTTGACACATACTGTG+TGG - chr7_1:78267580-78267599 Msa1040800:CDS 35.0%
ATAATCGGATCACTTTCTCT+AGG + chr7_1:78267741-78267760 None:intergenic 35.0%
TCCTTATCGAAGCTGATAAT+CGG + chr7_1:78267756-78267775 None:intergenic 35.0%
!! TTTACAATTTCAGGTTCGCT+TGG - chr7_1:78267815-78267834 Msa1040800:intron 35.0%
TGGCAACTACAGATATCAAA+AGG + chr7_1:78267864-78267883 None:intergenic 35.0%
! TTTTGATATCTGTAGTTGCC+AGG - chr7_1:78267863-78267882 Msa1040800:intron 35.0%
TGTAGTTGCCAGGTAAATAA+TGG - chr7_1:78267873-78267892 Msa1040800:intron 35.0%
! AACTCACCATACTGTTTTGT+CGG - chr7_1:78268187-78268206 Msa1040800:intron 35.0%
! AAGCTTCTTGGTAATCACAT+TGG + chr7_1:78268451-78268470 None:intergenic 35.0%
ATTACCAAGAAGCTTAGAGA+AGG - chr7_1:78268456-78268475 Msa1040800:intron 35.0%
! CTTTGGTAATAGTGTCTACT+CGG - chr7_1:78268656-78268675 Msa1040800:intron 35.0%
ACGTGTACTTAATTCCAAAG+GGG + chr7_1:78268811-78268830 None:intergenic 35.0%
GAACGTGTACTTAATTCCAA+AGG + chr7_1:78268813-78268832 None:intergenic 35.0%
AAAGAAACCATACCTCCAAA+TGG + chr7_1:78268835-78268854 None:intergenic 35.0%
! CATGTTCAATTTTCCTCGAT+GGG + chr7_1:78269015-78269034 None:intergenic 35.0%
! TCATGTTCAATTTTCCTCGA+TGG + chr7_1:78269016-78269035 None:intergenic 35.0%
AACTAGGAATGTAAACGAGT+CGG - chr7_1:78269165-78269184 Msa1040800:CDS 35.0%
GTTCATGTCATATTTGTACC+GGG - chr7_1:78269490-78269509 Msa1040800:intron 35.0%
GGGGGGAATATACAATATAA+TGG + chr7_1:78269654-78269673 None:intergenic 35.0%
TAATAACATAGCACGAGTCA+GGG + chr7_1:78269706-78269725 None:intergenic 35.0%
ATAATAACATAGCACGAGTC+AGG + chr7_1:78269707-78269726 None:intergenic 35.0%
ATGGTCATACAGGTACAATA+CGG + chr7_1:78269855-78269874 None:intergenic 35.0%
TCGAGCTCAATCTCAAATTT+AGG - chr7_1:78270007-78270026 Msa1040800:intron 35.0%
TACTTGTATCTCTTGGAACA+CGG + chr7_1:78270062-78270081 None:intergenic 35.0%
ACTTAGCTACTTGTATCTCT+TGG + chr7_1:78270069-78270088 None:intergenic 35.0%
TATGAAACGAAGCGAATTTG+TGG - chr7_1:78270366-78270385 Msa1040800:intron 35.0%
! TCCTTCTCAATTAAAGTGTC+TGG - chr7_1:78270497-78270516 Msa1040800:intron 35.0%
ACCAGACACTTTAATTGAGA+AGG + chr7_1:78270501-78270520 None:intergenic 35.0%
!!! TTCTTTTTCAGGGACACTAT+CGG - chr7_1:78270651-78270670 Msa1040800:CDS 35.0%
!! TGTCAACTTGTTGGTTGAAA+TGG - chr7_1:78270776-78270795 Msa1040800:CDS 35.0%
GAGGAAGACATAACGTATAT+CGG - chr7_1:78270882-78270901 Msa1040800:five_prime_UTR 35.0%
! ATATCGGCAATGACTTTTGA+TGG - chr7_1:78270898-78270917 Msa1040800:five_prime_UTR 35.0%
CAAACACAAACTAATGCCAA+GGG - chr7_1:78271123-78271142 Msa1040800:five_prime_UTR 35.0%
GAGAAAGAAGTAACGTGAGT+GGG + chr7_1:78264872-78264891 None:intergenic 40.0%
TGAGAAAGAAGTAACGTGAG+TGG + chr7_1:78264873-78264892 None:intergenic 40.0%
TGATGCTATGTTACTCTTGG+AGG + chr7_1:78264905-78264924 None:intergenic 40.0%
GAGTAACATAGCATCAACAC+AGG - chr7_1:78264909-78264928 Msa1040800:three_prime_UTR 40.0%
! CGTTGTTTCGGTTGAAGAAT+TGG - chr7_1:78265140-78265159 Msa1040800:CDS 40.0%
TGTTTCGGTTGAAGAATTGG+GGG - chr7_1:78265143-78265162 Msa1040800:CDS 40.0%
TTTAATGGGGGTAAAAAGCG+TGG - chr7_1:78265261-78265280 Msa1040800:intron 40.0%
! TTAATGGGGGTAAAAAGCGT+GGG - chr7_1:78265262-78265281 Msa1040800:intron 40.0%
! TTTTGTGAGGCTGATGAACA+TGG - chr7_1:78265306-78265325 Msa1040800:intron 40.0%
TGTCATATTTCTCACAAGGG+TGG + chr7_1:78265601-78265620 None:intergenic 40.0%
TTACTCTTGTGGTGACACAA+AGG + chr7_1:78265751-78265770 None:intergenic 40.0%
! TTGATGCTGTGTTACTCTTG+TGG + chr7_1:78265762-78265781 None:intergenic 40.0%
GAGTAACACAGCATCAATAC+AGG - chr7_1:78265765-78265784 Msa1040800:intron 40.0%
ATGAGCTTGAAGGAGATTCT+CGG + chr7_1:78265933-78265952 None:intergenic 40.0%
GAATCTCCTTCAAGCTCATT+CGG - chr7_1:78265934-78265953 Msa1040800:intron 40.0%
!!! TCATGGTAGCTTTGAGGTTT+TGG + chr7_1:78266134-78266153 None:intergenic 40.0%
TAACGGTTACAATCGTGTCA+CGG + chr7_1:78266207-78266226 None:intergenic 40.0%
TAAGCTTTCACCCGGAAAAA+AGG + chr7_1:78266343-78266362 None:intergenic 40.0%
!!! AGCTTACGCTGGTTTTGTTT+AGG - chr7_1:78266357-78266376 Msa1040800:intron 40.0%
AGGTGATGAAAATTTCCTGG+AGG - chr7_1:78266377-78266396 Msa1040800:intron 40.0%
GCAACTCATTCGCAATTTCT+TGG - chr7_1:78266710-78266729 Msa1040800:intron 40.0%
ATTTGATAAGATCACCACCC+TGG + chr7_1:78266760-78266779 None:intergenic 40.0%
AGGGTGGTGATCTTATCAAA+TGG - chr7_1:78266759-78266778 Msa1040800:intron 40.0%
GGGTGGTGATCTTATCAAAT+GGG - chr7_1:78266760-78266779 Msa1040800:intron 40.0%
AAATGGGACAAGGCCAAAAT+TGG - chr7_1:78266776-78266795 Msa1040800:intron 40.0%
!! GTTGGTATTGACATTGCTGA+AGG - chr7_1:78266806-78266825 Msa1040800:intron 40.0%
!!! CTGTACTGGTTTTCCTTATC+CGG - chr7_1:78266850-78266869 Msa1040800:intron 40.0%
CAAATTTACTGCCACTAGCA+AGG + chr7_1:78267088-78267107 None:intergenic 40.0%
TATGGCAATGGCAAATAGCT+TGG + chr7_1:78267164-78267183 None:intergenic 40.0%
TACTTCCATACCTCTTGACA+TGG - chr7_1:78267672-78267691 Msa1040800:CDS 40.0%
! TTTGAAGTTGCCATGTCAAG+AGG + chr7_1:78267685-78267704 None:intergenic 40.0%
TCCGATTATCAGCTTCGATA+AGG - chr7_1:78267752-78267771 Msa1040800:intron 40.0%
!! AAAGTTGATGCAGAGCAACA+AGG + chr7_1:78267971-78267990 None:intergenic 40.0%
TAGGGAATCGTTGTAGAACA+GGG + chr7_1:78268073-78268092 None:intergenic 40.0%
TTAGGGAATCGTTGTAGAAC+AGG + chr7_1:78268074-78268093 None:intergenic 40.0%
! GTTGTACCGACAAAACAGTA+TGG + chr7_1:78268196-78268215 None:intergenic 40.0%
AGTTTGCATTGCATTACTCC+TGG - chr7_1:78268337-78268356 Msa1040800:intron 40.0%
! TTGGTAATCACATTGGCATC+TGG + chr7_1:78268444-78268463 None:intergenic 40.0%
AACACCTTCTCTAAGCTTCT+TGG + chr7_1:78268463-78268482 None:intergenic 40.0%
ACTAAATGAGGTCAGCTACA+TGG + chr7_1:78268563-78268582 None:intergenic 40.0%
TGATGTGAATATGCAGCTGA+AGG - chr7_1:78268627-78268646 Msa1040800:intron 40.0%
GATGTGAATATGCAGCTGAA+GGG - chr7_1:78268628-78268647 Msa1040800:intron 40.0%
CGAGTAGACACTATTACCAA+AGG + chr7_1:78268658-78268677 None:intergenic 40.0%
GTAATAGTGTCTACTCGGTT+TGG - chr7_1:78268661-78268680 Msa1040800:intron 40.0%
TTTAAATCATCCTGCCCCTT+TGG - chr7_1:78268794-78268813 Msa1040800:CDS 40.0%
TAAGTACACGTTCCATTTGG+AGG - chr7_1:78268820-78268839 Msa1040800:intron 40.0%
! TTTTCCTCGATGGGCAAATT+TGG + chr7_1:78269006-78269025 None:intergenic 40.0%
ATGCAAACTCAAACCCACTT+GGG + chr7_1:78269090-78269109 None:intergenic 40.0%
AATGCAAACTCAAACCCACT+TGG + chr7_1:78269091-78269110 None:intergenic 40.0%
ACTAGGAATGTAAACGAGTC+GGG - chr7_1:78269166-78269185 Msa1040800:CDS 40.0%
CAACTCAAGCTTCAAGTACA+TGG + chr7_1:78269197-78269216 None:intergenic 40.0%
!! ACTTCTTAAGCTCTGAAGCA+TGG - chr7_1:78269457-78269476 Msa1040800:intron 40.0%
!! CTTCTTAAGCTCTGAAGCAT+GGG - chr7_1:78269458-78269477 Msa1040800:intron 40.0%
!! AAGAGTATCAGGTACAGGTA+TGG + chr7_1:78269518-78269537 None:intergenic 40.0%
!! ACTTGTACCAGAAGAGTATC+AGG + chr7_1:78269529-78269548 None:intergenic 40.0%
TGAATACTCCATCTGAGTAC+AGG - chr7_1:78269588-78269607 Msa1040800:CDS 40.0%
!! CAATACGGGATTTCTAGCTA+AGG + chr7_1:78269840-78269859 None:intergenic 40.0%
TGGTCATACAGGTACAATAC+GGG + chr7_1:78269854-78269873 None:intergenic 40.0%
GAATCAAGTTCAAGCGTTAC+AGG + chr7_1:78269977-78269996 None:intergenic 40.0%
TAGAAGTTGAAGGTGGGATT+AGG + chr7_1:78270251-78270270 None:intergenic 40.0%
TTTCTTGTAAACCAACAGCG+AGG - chr7_1:78270801-78270820 Msa1040800:exon 40.0%
!! TCGAGGGTTGATGCATATTA+CGG - chr7_1:78270860-78270879 Msa1040800:five_prime_UTR 40.0%
CTCATACAAATTGGCAATGC+AGG + chr7_1:78270975-78270994 None:intergenic 40.0%
ATTGCCAATTTGTATGAGCC+AGG - chr7_1:78270977-78270996 Msa1040800:intron 40.0%
CAACAAGATGGTGAGATGAA+TGG + chr7_1:78271004-78271023 None:intergenic 40.0%
GCAAACACAAACTAATGCCA+AGG - chr7_1:78271122-78271141 Msa1040800:five_prime_UTR 40.0%
AAAGAAGTAACGTGAGTGGG+AGG + chr7_1:78264869-78264888 None:intergenic 45.0%
!! TCGGTTGGAAACTTTGAAGC+TGG + chr7_1:78265114-78265133 None:intergenic 45.0%
! AACCGATTTCGGCGTTGTTT+CGG - chr7_1:78265128-78265147 Msa1040800:CDS 45.0%
AACCGAAACAACGCCGAAAT+CGG + chr7_1:78265133-78265152 None:intergenic 45.0%
!! GAGGAGACAGTTGTTGATTC+AGG - chr7_1:78265371-78265390 Msa1040800:intron 45.0%
! GACATGAGTTGAGTAAACCG+TGG - chr7_1:78265554-78265573 Msa1040800:intron 45.0%
TATTTCTCACAAGGGTGGCT+TGG + chr7_1:78265596-78265615 None:intergenic 45.0%
TCTTTGTGCTTTCATCCTCC+AGG + chr7_1:78266395-78266414 None:intergenic 45.0%
! ACTAGCTTCTCGTTCTTCCA+GGG + chr7_1:78266466-78266485 None:intergenic 45.0%
ATTCAACTCTATGCTTGCCG+AGG - chr7_1:78266619-78266638 Msa1040800:intron 45.0%
ATTAACACCTACCTTGCCAC+AGG + chr7_1:78266665-78266684 None:intergenic 45.0%
TGTGGCAAGGTAGGTGTTAA+TGG - chr7_1:78266664-78266683 Msa1040800:intron 45.0%
!! CATCACCATTGTAACGGGTA+CGG + chr7_1:78267230-78267249 None:intergenic 45.0%
ACTTCTTACGTCGCTGATGA+TGG + chr7_1:78267257-78267276 None:intergenic 45.0%
AGTTGCCATGTCAAGAGGTA+TGG + chr7_1:78267680-78267699 None:intergenic 45.0%
GTACTTAATTCCAAAGGGGC+AGG + chr7_1:78268807-78268826 None:intergenic 45.0%
ACACGTTCCATTTGGAGGTA+TGG - chr7_1:78268825-78268844 Msa1040800:intron 45.0%
AACTCAAACCCACTTGGGTT+GGG + chr7_1:78269085-78269104 None:intergenic 45.0%
AAACTCAAACCCACTTGGGT+TGG + chr7_1:78269086-78269105 None:intergenic 45.0%
ACCTGTACCTGATACTCTTC+TGG - chr7_1:78269519-78269538 Msa1040800:CDS 45.0%
!! ACCAGAAGAGTATCAGGTAC+AGG + chr7_1:78269523-78269542 None:intergenic 45.0%
ATACTCCATCTGAGTACAGG+TGG - chr7_1:78269591-78269610 Msa1040800:CDS 45.0%
TACTCCATCTGAGTACAGGT+GGG - chr7_1:78269592-78269611 Msa1040800:CDS 45.0%
CCTGTATGACCATATCCATG+CGG - chr7_1:78269862-78269881 Msa1040800:intron 45.0%
CAACAGCGTCCTACAACAAA+AGG + chr7_1:78270140-78270159 None:intergenic 45.0%
! ACGCTGTTGATTGTCCTGAA+TGG - chr7_1:78270151-78270170 Msa1040800:intron 45.0%
TGAAAGGGGACAATCCATTC+AGG + chr7_1:78270168-78270187 None:intergenic 45.0%
CGCTTCGTTTCATATACTCG+TGG + chr7_1:78270360-78270379 None:intergenic 45.0%
GTATATCGTCAGTGTCGTCT+CGG + chr7_1:78270532-78270551 None:intergenic 45.0%
TGACACTAACACGTTGACAC+CGG + chr7_1:78270583-78270602 None:intergenic 45.0%
! GACACTATCGGCTGATGAAT+GGG - chr7_1:78270663-78270682 Msa1040800:CDS 45.0%
! GATCTTTTCTGCCACTCACT+CGG + chr7_1:78270842-78270861 None:intergenic 45.0%
TGAGTGGCAGAAAAGATCGA+GGG - chr7_1:78270844-78270863 Msa1040800:five_prime_UTR 45.0%
!! AGGGTTGATGCATATTACGG+AGG - chr7_1:78270863-78270882 Msa1040800:five_prime_UTR 45.0%
TGGTCCTGGCTCATACAAAT+TGG + chr7_1:78270984-78271003 None:intergenic 45.0%
!! ATTTATATAGTAAAAAAATA+GGG + chr7_1:78269676-78269695 None:intergenic 5.0%
!! ATATATAGAATAAAAAAATT+TGG + chr7_1:78269741-78269760 None:intergenic 5.0%
GAAACAACGCCGAAATCGGT+TGG + chr7_1:78265129-78265148 None:intergenic 50.0%
GGTTGACCGAATGAGCTTGA+AGG + chr7_1:78265943-78265962 None:intergenic 50.0%
! CCTCAGTCATGGTAGCTTTG+AGG + chr7_1:78266140-78266159 None:intergenic 50.0%
CCTCAAAGCTACCATGACTG+AGG - chr7_1:78266137-78266156 Msa1040800:intron 50.0%
TACCATGACTGAGGCTGCAA+CGG - chr7_1:78266146-78266165 Msa1040800:intron 50.0%
TCGTGTCACGGTCATCGAAA+TGG + chr7_1:78266195-78266214 None:intergenic 50.0%
AACCAGCGTAAGCTTTCACC+CGG + chr7_1:78266351-78266370 None:intergenic 50.0%
!! GACTAGCTTCTCGTTCTTCC+AGG + chr7_1:78266467-78266486 None:intergenic 50.0%
! GGTCAAGTACTGCATCTCCT+CGG + chr7_1:78266639-78266658 None:intergenic 50.0%
GATTGCCGTACCCGTTACAA+TGG - chr7_1:78267222-78267241 Msa1040800:intron 50.0%
GTCGGCATCACCATTGTAAC+GGG + chr7_1:78267235-78267254 None:intergenic 50.0%
GGTCGGCATCACCATTGTAA+CGG + chr7_1:78267236-78267255 None:intergenic 50.0%
!! CTTACGTCGCTGATGATGGT+CGG + chr7_1:78267253-78267272 None:intergenic 50.0%
TTTCCTGCTCGCCTCTTATG+TGG - chr7_1:78267282-78267301 Msa1040800:intron 50.0%
TCGCTTGGACAAAGTTCTCG+CGG - chr7_1:78267830-78267849 Msa1040800:intron 50.0%
GCATTACTCCTGGTCTACAG+AGG - chr7_1:78268347-78268366 Msa1040800:intron 50.0%
GTGTCAGCTTTACTTCGTCC+AGG - chr7_1:78268396-78268415 Msa1040800:intron 50.0%
TCAGCTTTACTTCGTCCAGG+AGG - chr7_1:78268399-78268418 Msa1040800:intron 50.0%
GTAGCCAAATTTGCCCATCG+AGG - chr7_1:78268999-78269018 Msa1040800:intron 50.0%
CTTGGAGTGTGCTCTTCTCA+AGG + chr7_1:78269041-78269060 None:intergenic 50.0%
! CTTGAGAAGAGCACACTCCA+AGG - chr7_1:78269039-78269058 Msa1040800:intron 50.0%
!!! TGGGCTAGTGGTTTTGGCTT+GGG + chr7_1:78269066-78269085 None:intergenic 50.0%
!!! TTGGGCTAGTGGTTTTGGCT+TGG + chr7_1:78269067-78269086 None:intergenic 50.0%
!!! TTGGGTTGGGCTAGTGGTTT+TGG + chr7_1:78269072-78269091 None:intergenic 50.0%
TCAGGTACAGGTATGGTACC+CGG + chr7_1:78269511-78269530 None:intergenic 50.0%
AGTACCCACCTGTACTCAGA+TGG + chr7_1:78269599-78269618 None:intergenic 50.0%
CCGCATGGATATGGTCATAC+AGG + chr7_1:78269865-78269884 None:intergenic 50.0%
AGATCTACGCCGCATGGATA+TGG + chr7_1:78269874-78269893 None:intergenic 50.0%
TCCATGCGGCGTAGATCTTA+AGG - chr7_1:78269876-78269895 Msa1040800:intron 50.0%
TGTATCTCTTGGAACACGGC+TGG + chr7_1:78270058-78270077 None:intergenic 50.0%
!! ATGCGAAGACTTGGTGCGTT+GGG - chr7_1:78270394-78270413 Msa1040800:intron 50.0%
! GGACACTATCGGCTGATGAA+TGG - chr7_1:78270662-78270681 Msa1040800:CDS 50.0%
! CCACTCACTCGGTTTTTGTC+AGG + chr7_1:78270831-78270850 None:intergenic 50.0%
CCTGACAAAAACCGAGTGAG+TGG - chr7_1:78270828-78270847 Msa1040800:five_prime_UTR 50.0%
GTGAGTGGCAGAAAAGATCG+AGG - chr7_1:78270843-78270862 Msa1040800:five_prime_UTR 50.0%
GATGGTGAGATGAATGGTCC+TGG + chr7_1:78270998-78271017 None:intergenic 50.0%
CAAAGGATGCCGTCGCAAGA+AGG + chr7_1:78265734-78265753 None:intergenic 55.0%
TTCCGGGTGAAAGCTTACGC+TGG - chr7_1:78266346-78266365 Msa1040800:intron 55.0%
TCGTTCTTCCAGGGTCTGGT+TGG + chr7_1:78266457-78266476 None:intergenic 55.0%
CTTCTCGTTCTTCCAGGGTC+TGG + chr7_1:78266461-78266480 None:intergenic 55.0%
GCAGTACTTGACCTTGCCTG+TGG - chr7_1:78266646-78266665 Msa1040800:intron 55.0%
ACTTGACCTTGCCTGTGGCA+AGG - chr7_1:78266651-78266670 Msa1040800:intron 55.0%
TCTCCACATAAGAGGCGAGC+AGG + chr7_1:78267288-78267307 None:intergenic 55.0%
!!! CGTCCAGGAGGCGTTTTCAT+CGG - chr7_1:78268411-78268430 Msa1040800:intron 55.0%
GTTCCGATGAAAACGCCTCC+TGG + chr7_1:78268417-78268436 None:intergenic 55.0%
GCAGCTGAAGGGTTGACCTT+TGG - chr7_1:78268639-78268658 Msa1040800:intron 55.0%
!!! GTGGTTTTGGCTTGGGACCT+TGG + chr7_1:78269059-78269078 None:intergenic 55.0%
AACCACTAGCCCAACCCAAG+TGG - chr7_1:78269073-78269092 Msa1040800:intron 55.0%
ACCACTAGCCCAACCCAAGT+GGG - chr7_1:78269074-78269093 Msa1040800:intron 55.0%
GCCTTAAGATCTACGCCGCA+TGG + chr7_1:78269880-78269899 None:intergenic 55.0%
GTGGACCTCATGCGAAGACT+TGG - chr7_1:78270385-78270404 Msa1040800:intron 55.0%
ACGCACCAAGTCTTCGCATG+AGG + chr7_1:78270393-78270412 None:intergenic 55.0%
!! CATGCGAAGACTTGGTGCGT+TGG - chr7_1:78270393-78270412 Msa1040800:intron 55.0%
!! TGCGAAGACTTGGTGCGTTG+GGG - chr7_1:78270395-78270414 Msa1040800:intron 55.0%
GGGGATGGCAACCAAGATCA+AGG - chr7_1:78270415-78270434 Msa1040800:intron 55.0%
!! TGTCAGGTTGACCTCGCTGT+TGG + chr7_1:78270815-78270834 None:intergenic 55.0%
! TAGTGGCGGAGAGCGGTAGA+GGG + chr7_1:78264832-78264851 None:intergenic 60.0%
CTTCGCGTGCCTTCTTGCGA+CGG - chr7_1:78265722-78265741 Msa1040800:intron 60.0%
CACCGTTGCAGCCTCAGTCA+TGG + chr7_1:78266151-78266170 None:intergenic 60.0%
CATGACTGAGGCTGCAACGG+TGG - chr7_1:78266149-78266168 Msa1040800:intron 60.0%
TGCAAGGTCCAACCAGACCC+TGG - chr7_1:78266446-78266465 Msa1040800:intron 60.0%
GACCTTGCCTGTGGCAAGGT+AGG - chr7_1:78266655-78266674 Msa1040800:intron 60.0%
CACCTACCTTGCCACAGGCA+AGG + chr7_1:78266660-78266679 None:intergenic 60.0%
AGCACGTGCCTCTGTAGACC+AGG + chr7_1:78268358-78268377 None:intergenic 60.0%
! GGTCTACAGAGGCACGTGCT+CGG - chr7_1:78268358-78268377 Msa1040800:intron 60.0%
!! ACCCACTTGGGTTGGGCTAG+TGG + chr7_1:78269078-78269097 None:intergenic 60.0%
!! GCGAAGACTTGGTGCGTTGG+GGG - chr7_1:78270396-78270415 Msa1040800:intron 60.0%
!! AGACTTGGTGCGTTGGGGGA+TGG - chr7_1:78270400-78270419 Msa1040800:intron 60.0%
! GTAGTGGCGGAGAGCGGTAG+AGG + chr7_1:78264833-78264852 None:intergenic 65.0%
! CGGTGAGTAGTGGCGGAGAG+CGG + chr7_1:78264839-78264858 None:intergenic 65.0%
CGCTCTCCGCCACTACTCAC+CGG - chr7_1:78264837-78264856 Msa1040800:intron 65.0%
CTGCAGCCGGTGAGTAGTGG+CGG + chr7_1:78264846-78264865 None:intergenic 65.0%
AGGCTGCAGCCGGTGAGTAG+TGG + chr7_1:78264849-78264868 None:intergenic 65.0%
CGTGAGTGGGAGGCTGCAGC+CGG + chr7_1:78264859-78264878 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78264735 78271296 78264735 ID=Msa1040800;Name=Msa1040800
chr7_1 mRNA 78264735 78271296 78264735 ID=Msa1040800-mRNA-1;Parent=Msa1040800;Name=Msa1040800-mRNA-1;_AED=0.16;_eAED=0.16;_QI=310|0.66|0.68|1|0.66|0.75|16|336|418
chr7_1 exon 78264735 78264792 78264735 ID=Msa1040800-mRNA-1:exon:20875;Parent=Msa1040800-mRNA-1
chr7_1 exon 78264813 78264843 78264813 ID=Msa1040800-mRNA-1:exon:20874;Parent=Msa1040800-mRNA-1
chr7_1 exon 78264867 78265212 78264867 ID=Msa1040800-mRNA-1:exon:20873;Parent=Msa1040800-mRNA-1
chr7_1 exon 78265308 78265339 78265308 ID=Msa1040800-mRNA-1:exon:20872;Parent=Msa1040800-mRNA-1
chr7_1 exon 78265595 78265718 78265595 ID=Msa1040800-mRNA-1:exon:20871;Parent=Msa1040800-mRNA-1
chr7_1 exon 78265819 78265881 78265819 ID=Msa1040800-mRNA-1:exon:20870;Parent=Msa1040800-mRNA-1
chr7_1 exon 78267190 78267240 78267190 ID=Msa1040800-mRNA-1:exon:20869;Parent=Msa1040800-mRNA-1
chr7_1 exon 78267579 78267692 78267579 ID=Msa1040800-mRNA-1:exon:20868;Parent=Msa1040800-mRNA-1
chr7_1 exon 78268147 78268203 78268147 ID=Msa1040800-mRNA-1:exon:20867;Parent=Msa1040800-mRNA-1
chr7_1 exon 78268714 78268815 78268714 ID=Msa1040800-mRNA-1:exon:20866;Parent=Msa1040800-mRNA-1
chr7_1 exon 78269160 78269270 78269160 ID=Msa1040800-mRNA-1:exon:20865;Parent=Msa1040800-mRNA-1
chr7_1 exon 78269359 78269427 78269359 ID=Msa1040800-mRNA-1:exon:20864;Parent=Msa1040800-mRNA-1
chr7_1 exon 78269513 78269652 78269513 ID=Msa1040800-mRNA-1:exon:20863;Parent=Msa1040800-mRNA-1
chr7_1 exon 78270040 78270157 78270040 ID=Msa1040800-mRNA-1:exon:20862;Parent=Msa1040800-mRNA-1
chr7_1 exon 78270639 78270929 78270639 ID=Msa1040800-mRNA-1:exon:20861;Parent=Msa1040800-mRNA-1
chr7_1 exon 78271101 78271296 78271101 ID=Msa1040800-mRNA-1:exon:20860;Parent=Msa1040800-mRNA-1
chr7_1 five_prime_UTR 78271101 78271296 78271101 ID=Msa1040800-mRNA-1:five_prime_utr;Parent=Msa1040800-mRNA-1
chr7_1 five_prime_UTR 78270816 78270929 78270816 ID=Msa1040800-mRNA-1:five_prime_utr;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78270639 78270815 78270639 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78270040 78270157 78270040 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78269513 78269652 78269513 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78269359 78269427 78269359 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78269160 78269270 78269160 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78268714 78268815 78268714 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78268147 78268203 78268147 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78267579 78267692 78267579 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78267190 78267240 78267190 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78265819 78265881 78265819 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78265595 78265718 78265595 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78265308 78265339 78265308 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 CDS 78265114 78265212 78265114 ID=Msa1040800-mRNA-1:cds;Parent=Msa1040800-mRNA-1
chr7_1 three_prime_UTR 78264867 78265113 78264867 ID=Msa1040800-mRNA-1:three_prime_utr;Parent=Msa1040800-mRNA-1
chr7_1 three_prime_UTR 78264813 78264843 78264813 ID=Msa1040800-mRNA-1:three_prime_utr;Parent=Msa1040800-mRNA-1
chr7_1 three_prime_UTR 78264735 78264792 78264735 ID=Msa1040800-mRNA-1:three_prime_utr;Parent=Msa1040800-mRNA-1
Gene Sequence

>Msa1040800

ATGAGTTATAAGAGGGGCTTGTTGAATGATAAAGTTGGTTCCTTTTTTAATGGGGGTAAAAAGCGTGGGAAGATTTTTACAAAGATGTCTTTTTGTGAGGCTGATGAACATGGACAAGAACAAGATAGTGTGAATCTTAATGGTTCTGTTAATTTGAGGAGACAGTTGTTGATTCAGCAATTCGAACTATGCTTAATATATTTAATCATTGTAGGTCTTATGAAACGAGGATACCGAGAATCTCCTTCAAGCTCATTCGGTCAACCTCATTCTAAACCTAGACATAATTCTCAAGGTGATGAAAATTTCCTGGAGGATGAAAGCACAAAGAATTACGCTCGGAAAGTAGCTGATCATTATAGTGCAAGGTCCAACCAGACCCTGGAAGAACGAGAAGCTAGTCCAATAATTCATTTGAAGAAACTTAATAATTGGATTAAGAGTGTCTTAATTCAACTCTATGCTTGCCGAGGAGATGCAGTACTTGACCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGTTCAGTAAGTGTTAAAATTTTCTGTACTGGTTTTCCTTATCCGATCAAAGATTGCCGTACCCGTTACAATGGTGATGCCGACCATCATCAGCGACGTAAGAAGTTTACATTTCCTGCTCGCCTCTTATGTGGAGATTGTTATGAGGTTCGCTTGGACAAAGTTCTCGCGGAAGATGCTCCTTTTGATATCTGTAGTTGCCAGTTTGCATTGCATTACTCCTGGTCTACAGAGGCACGTGCTCGGCGAGCATTAGCTAATGTGTCAGCTTTACTTCGTCCAGGAGGCGTTTTCATCGGAACTATGCCAGATGCCAATAAATTTAAATCATCCTGCCCCTTTGGAATTAAGTACACGTTCCATTTGGAGGACGCTGTTGATTGTCCTGAATGGATTGTCCCCTTTCACGTATTCAAATCATTAGCTGAAGAGTATGATTTTGAGCTTGTTTTCGCAAAGAACTCGCATGAATTTGTCCACGAGTATATGAAACGAAGCGAATTTGTGGACCTCATGCGAAGACTTGGTGCGTTGGGGGATGGCAACCAAGATCAAGCGTATTTATATATGTCATTTGTATTGAGAAAGCGAGGTCAACCTGACAAAAACCGAGTGAGTGGCAGAAAAGATCGAGGGTTGATGCATATTACGGAGGAAGACATAACGTATATCGGCAATGACTTTTGA

Protein sequence

>Msa1040800

MSYKRGLLNDKVGSFFNGGKKRGKIFTKMSFCEADEHGQEQDSVNLNGSVNLRRQLLIQQFELCLIYLIIVGLMKRGYRESPSSSFGQPHSKPRHNSQGDENFLEDESTKNYARKVADHYSARSNQTLEEREASPIIHLKKLNNWIKSVLIQLYACRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSVSVKIFCTGFPYPIKDCRTRYNGDADHHQRRKKFTFPARLLCGDCYEVRLDKVLAEDAPFDICSCQFALHYSWSTEARARRALANVSALLRPGGVFIGTMPDANKFKSSCPFGIKYTFHLEDAVDCPEWIVPFHVFKSLAEEYDFELVFAKNSHEFVHEYMKRSEFVDLMRRLGALGDGNQDQAYLYMSFVLRKRGQPDKNRVSGRKDRGLMHITEEDITYIGNDF*