AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCAAGATTAGAATAAT+TGG 0.172795 1_2:-13047320 None:intergenic
CTCTCCACCGCTTCTAATTC+TGG 0.183017 1_2:+13042433 Msa0057140:five_prime_UTR
CCCTCCTGTGTTGTTCAAAT+TGG 0.242473 1_2:+13043346 Msa0057140:CDS
TGTTATTCCTGACTTATGTT+AGG 0.274319 1_2:+13047211 Msa0057140:three_prime_UTR
GAACAACACAGGAGGGTTCT+TGG 0.333889 1_2:-13043339 None:intergenic
CTAATAACTACTCTTCTTCT+TGG 0.335583 1_2:-13047112 None:intergenic
AATCGTGCGGAAGGCTTCTC+AGG 0.375841 1_2:+13047012 Msa0057140:CDS
TAACTTTCATTTAGTGTTAG+TGG 0.382427 1_2:+13047184 Msa0057140:three_prime_UTR
GAAATAAGTGGGACGAAGAA+TGG 0.404264 1_2:+13047084 Msa0057140:exon
AACCCACAGGATTGTTCTGC+TGG 0.412188 1_2:+13046971 Msa0057140:intron
GTTATTCCTGACTTATGTTA+GGG 0.421578 1_2:+13047212 Msa0057140:three_prime_UTR
CACTTATTTCATCAGCTCAT+GGG 0.431495 1_2:-13047071 None:intergenic
CCACTTATTTCATCAGCTCA+TGG 0.432843 1_2:-13047072 None:intergenic
GCTGCAAGATTAGAATAATT+GGG 0.462488 1_2:-13047319 None:intergenic
CTTGCCTTACGAACAACAGC+AGG 0.491565 1_2:-13046848 None:intergenic
AACTTTCATTTAGTGTTAGT+GGG 0.493935 1_2:+13047185 Msa0057140:three_prime_UTR
TTTCCCTGCTGTTGTTCGTA+AGG 0.495786 1_2:+13046844 Msa0057140:CDS
AAATAAGTGGGACGAAGAAT+GGG 0.497020 1_2:+13047085 Msa0057140:exon
AGCATTCCCTAACATAAGTC+AGG 0.505561 1_2:-13047218 None:intergenic
TCTGCTGGGAGGAATTCATA+TGG 0.515557 1_2:+13046986 Msa0057140:CDS
AACAATTTGACAAACTTCAA+AGG 0.542380 1_2:-13045546 None:intergenic
CCATGAGCTGATGAAATAAG+TGG 0.557576 1_2:+13047072 Msa0057140:exon
TCAGGTGAATATTAATAATG+AGG 0.567120 1_2:+13047030 Msa0057140:CDS
GGAACCAGAATTAGAAGCGG+TGG 0.588450 1_2:-13042437 None:intergenic
ACCCACAGGATTGTTCTGCT+GGG 0.592865 1_2:+13046972 Msa0057140:intron
ATGTTAGGGAATGCTCTCCA+TGG 0.593182 1_2:+13047226 Msa0057140:three_prime_UTR
GCCAATTTGAACAACACAGG+AGG 0.601516 1_2:-13043347 None:intergenic
ATATGGCATAATCGTGCGGA+AGG 0.607012 1_2:+13047003 Msa0057140:CDS
ACATTAATCAGAAATTGCTA+AGG 0.622225 1_2:+13046421 Msa0057140:intron
AATTTGACAAACTTCAAAGG+AGG 0.629694 1_2:-13045543 None:intergenic
CCAATTTGAACAACACAGGA+GGG 0.634346 1_2:-13043346 None:intergenic
CACAGGATTGTTCTGCTGGG+AGG 0.638267 1_2:+13046975 Msa0057140:intron
GGTGAATATTAATAATGAGG+TGG 0.643388 1_2:+13047033 Msa0057140:CDS
CATGAGCTGATGAAATAAGT+GGG 0.665728 1_2:+13047073 Msa0057140:exon
ATTCATATGGCATAATCGTG+CGG 0.678389 1_2:+13046999 Msa0057140:CDS
AAGTGGGACGAAGAATGGGA+TGG 0.681218 1_2:+13047089 Msa0057140:exon
AGTGCCAATTTGAACAACAC+AGG 0.682213 1_2:-13043350 None:intergenic
AAAGGAACCAGAATTAGAAG+CGG 0.693268 1_2:-13042440 None:intergenic
TTGCCTTACGAACAACAGCA+GGG 0.694424 1_2:-13046847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATCTCTATAAAAA+TGG - chr1_2:13042754-13042773 None:intergenic 10.0%
!! ATCTAAAAAAACTAATTTAA+AGG - chr1_2:13042830-13042849 None:intergenic 10.0%
!!! TGATTTTTTTTTTTGTTTTT+GGG + chr1_2:13042957-13042976 Msa0057140:intron 10.0%
!!! TTTTTTTTTCTTCTTTAAAT+AGG + chr1_2:13044153-13044172 Msa0057140:intron 10.0%
!! TACTTAAGTAAATTTAAATT+TGG - chr1_2:13044647-13044666 None:intergenic 10.0%
!!! ATGAATTTTATATAATCTTA+TGG + chr1_2:13044724-13044743 Msa0057140:intron 10.0%
!! AAAAAAAAAAAAAAATCAAG+AGG - chr1_2:13045764-13045783 None:intergenic 10.0%
!!! TACTATTCTTTTTTTTTTTT+GGG - chr1_2:13047140-13047159 None:intergenic 10.0%
!!! CTGATTTTTTTTTTTGTTTT+TGG + chr1_2:13042956-13042975 Msa0057140:intron 15.0%
!! AAAGGAAAAAAGAATTATAT+TGG - chr1_2:13043521-13043540 None:intergenic 15.0%
!!! TATCATCATTTTTAACTTTT+CGG + chr1_2:13043631-13043650 Msa0057140:intron 15.0%
!! TAATTATATCTATAGTAACA+TGG + chr1_2:13043799-13043818 Msa0057140:intron 15.0%
!! ATTTAAATTTGGAAAAACAA+AGG - chr1_2:13044636-13044655 None:intergenic 15.0%
!! TATTTGCACTTAAATTAATT+TGG + chr1_2:13045158-13045177 Msa0057140:intron 15.0%
!! ATTTGCACTTAAATTAATTT+GGG + chr1_2:13045159-13045178 Msa0057140:intron 15.0%
!! AAAAAACAGAAAGAAAAAAA+AGG - chr1_2:13045408-13045427 None:intergenic 15.0%
!! CTAATATAAATCATAACAAA+TGG - chr1_2:13045677-13045696 None:intergenic 15.0%
!! TAATGTTGAAATAAATAATC+TGG - chr1_2:13045934-13045953 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAGGATG+AGG - chr1_2:13046347-13046366 None:intergenic 15.0%
!! AAAATAATAGAGAATGAAAT+GGG - chr1_2:13046697-13046716 None:intergenic 15.0%
!! TAAACAAATAAGAAGTAAAA+GGG - chr1_2:13046783-13046802 None:intergenic 15.0%
!! TTAAACAAATAAGAAGTAAA+AGG - chr1_2:13046784-13046803 None:intergenic 15.0%
!!! ACTATTCTTTTTTTTTTTTG+GGG - chr1_2:13047139-13047158 None:intergenic 15.0%
!!! CTACTATTCTTTTTTTTTTT+TGG - chr1_2:13047141-13047160 None:intergenic 15.0%
!!! TTTGCATTTTTTCAATTTTC+AGG + chr1_2:13042521-13042540 Msa0057140:intron 20.0%
!!! TCAATATGTTCTGTAATTTT+TGG + chr1_2:13042698-13042717 Msa0057140:intron 20.0%
!!! TTCTGTAATTTTTGGATATT+AGG + chr1_2:13042706-13042725 Msa0057140:intron 20.0%
!!! TCTGTAATTTTTGGATATTA+GGG + chr1_2:13042707-13042726 Msa0057140:intron 20.0%
!!! TTTTTTTTGTTTTTGGGATT+AGG + chr1_2:13042963-13042982 Msa0057140:intron 20.0%
!!! TTTTTTTGTTTTTGGGATTA+GGG + chr1_2:13042964-13042983 Msa0057140:intron 20.0%
!! ACTTTATTGTGAAATTAGTT+TGG + chr1_2:13043073-13043092 Msa0057140:intron 20.0%
!!! CTTTATTGTGAAATTAGTTT+GGG + chr1_2:13043074-13043093 Msa0057140:intron 20.0%
!! ATTAAAAACGAAAAAAGACA+AGG - chr1_2:13043218-13043237 None:intergenic 20.0%
!! AGCATATTATTACAACATTA+CGG - chr1_2:13043416-13043435 None:intergenic 20.0%
!! AAGTAGTAATGATTAATGAA+GGG + chr1_2:13043588-13043607 Msa0057140:intron 20.0%
!! TTCTTCTTTAAATAGGAAAT+TGG + chr1_2:13044160-13044179 Msa0057140:intron 20.0%
!!! AGTATTTAAAGTGTGATTTA+AGG + chr1_2:13044663-13044682 Msa0057140:intron 20.0%
!!! ATCTATATTTTACGCATAAT+TGG - chr1_2:13044837-13044856 None:intergenic 20.0%
!! GCTAACTCAAATTAATTTAA+CGG - chr1_2:13044963-13044982 None:intergenic 20.0%
!! AAACATATTATATCTTCACA+TGG - chr1_2:13045030-13045049 None:intergenic 20.0%
!! ATCTAAATCTAAATAACAGA+TGG - chr1_2:13045201-13045220 None:intergenic 20.0%
!!! TGGTTATGTTTATTTTGTTA+TGG + chr1_2:13045309-13045328 Msa0057140:intron 20.0%
!! TGATTAAATAAGAAACGAAA+GGG - chr1_2:13045460-13045479 None:intergenic 20.0%
!! TTGATTAAATAAGAAACGAA+AGG - chr1_2:13045461-13045480 None:intergenic 20.0%
!! ATCAAAACATTAAACAGAAT+TGG + chr1_2:13045476-13045495 Msa0057140:intron 20.0%
!! TTGTATTAATATGTTCTTTG+TGG + chr1_2:13045620-13045639 Msa0057140:intron 20.0%
!! TCTTTGTGGTTAAATTAATT+TGG + chr1_2:13045634-13045653 Msa0057140:intron 20.0%
!! CTTTGTGGTTAAATTAATTT+GGG + chr1_2:13045635-13045654 Msa0057140:intron 20.0%
!!! TTTGTGGTTAAATTAATTTG+GGG + chr1_2:13045636-13045655 Msa0057140:intron 20.0%
!! ATAACATAGAAATAGACTAA+GGG + chr1_2:13045906-13045925 Msa0057140:intron 20.0%
!! TAAATTGGTTATGTTTATCT+TGG + chr1_2:13046235-13046254 Msa0057140:intron 20.0%
!! TAGAAAACATAGAATGAAAT+GGG - chr1_2:13046288-13046307 None:intergenic 20.0%
!! ATAGAAAACATAGAATGAAA+TGG - chr1_2:13046289-13046308 None:intergenic 20.0%
!! GAAAATAATAGAGAATGAAA+TGG - chr1_2:13046698-13046717 None:intergenic 20.0%
!! AATTCATTCTGCAATTTTAG+AGG + chr1_2:13042790-13042809 Msa0057140:intron 25.0%
! AGGGTGAGATTAATTTATTA+CGG - chr1_2:13043247-13043266 None:intergenic 25.0%
! TGATCAAATAAGAAACGAAA+GGG - chr1_2:13043266-13043285 None:intergenic 25.0%
! ATGATCAAATAAGAAACGAA+AGG - chr1_2:13043267-13043286 None:intergenic 25.0%
! GAAGTAGTAATGATTAATGA+AGG + chr1_2:13043587-13043606 Msa0057140:intron 25.0%
! AGTAGTAATGATTAATGAAG+GGG + chr1_2:13043589-13043608 Msa0057140:intron 25.0%
!!! TTTTAACTTTTCGGTATAGT+AGG + chr1_2:13043640-13043659 Msa0057140:intron 25.0%
! TACATCTAAATTGAGCAATT+TGG - chr1_2:13043722-13043741 None:intergenic 25.0%
! TAAAAAAATGAAGGAAGAAG+TGG + chr1_2:13044249-13044268 Msa0057140:intron 25.0%
!!! AACTTTTATGGTATTGGATA+AGG - chr1_2:13044355-13044374 None:intergenic 25.0%
!! ATGGTAAACTTTTATGGTAT+TGG - chr1_2:13044361-13044380 None:intergenic 25.0%
! AAAACAAAGGAAATTTGAAG+TGG - chr1_2:13044623-13044642 None:intergenic 25.0%
!!! CTATGCTTTTAAAATTAGCA+GGG + chr1_2:13044886-13044905 Msa0057140:intron 25.0%
! AAAACCTAAATCATAACAGA+TGG - chr1_2:13044997-13045016 None:intergenic 25.0%
!! AGGTTGCATTTTCATAAAAT+AGG - chr1_2:13045260-13045279 None:intergenic 25.0%
! AAAACAATAGAGAATGACAT+TGG - chr1_2:13045349-13045368 None:intergenic 25.0%
! AGGGTAAGATTATATTAACA+CGG - chr1_2:13045441-13045460 None:intergenic 25.0%
! AACAATTTGACAAACTTCAA+AGG - chr1_2:13045549-13045568 None:intergenic 25.0%
! CATAACATAGAAATAGACTA+AGG + chr1_2:13045905-13045924 Msa0057140:intron 25.0%
! CAAGTCTACATACTTAAATT+AGG - chr1_2:13046158-13046177 None:intergenic 25.0%
! GTGTTAATACACACATAAAT+TGG + chr1_2:13046220-13046239 Msa0057140:intron 25.0%
! AGACCAAATAAGAAACAAAA+GGG - chr1_2:13046399-13046418 None:intergenic 25.0%
! TAGACCAAATAAGAAACAAA+AGG - chr1_2:13046400-13046419 None:intergenic 25.0%
! ACATTAATCAGAAATTGCTA+AGG + chr1_2:13046421-13046440 Msa0057140:intron 25.0%
! TCTTTGCAGTGAAATTAATT+TGG + chr1_2:13046540-13046559 Msa0057140:intron 25.0%
! CTTTGCAGTGAAATTAATTT+GGG + chr1_2:13046541-13046560 Msa0057140:intron 25.0%
! GAGCTTGCATTTAATAAAAT+AGG - chr1_2:13046616-13046635 None:intergenic 25.0%
!!! GTTGTCTTCTATTTTGTTTT+TGG + chr1_2:13046721-13046740 Msa0057140:intron 25.0%
! TCAGGTGAATATTAATAATG+AGG + chr1_2:13047030-13047049 Msa0057140:CDS 25.0%
! TAACTTTCATTTAGTGTTAG+TGG + chr1_2:13047184-13047203 Msa0057140:three_prime_UTR 25.0%
! AACTTTCATTTAGTGTTAGT+GGG + chr1_2:13047185-13047204 Msa0057140:three_prime_UTR 25.0%
GACAAAGAAAAAGGAAGAAA+AGG - chr1_2:13042461-13042480 None:intergenic 30.0%
!! TTCTGCAATTTTAGAGGATT+AGG + chr1_2:13042796-13042815 Msa0057140:intron 30.0%
!! TCTGCAATTTTAGAGGATTA+GGG + chr1_2:13042797-13042816 Msa0057140:intron 30.0%
ATTAAATTTCCCAAGTATGG+CGG - chr1_2:13043129-13043148 None:intergenic 30.0%
TGGATTAAATTTCCCAAGTA+TGG - chr1_2:13043132-13043151 None:intergenic 30.0%
GAAAATAACAGAGAATGCAA+TGG - chr1_2:13043152-13043171 None:intergenic 30.0%
!!! CTTGTCTTCTGTTTTGATTT+TGG + chr1_2:13043176-13043195 Msa0057140:intron 30.0%
!! TCGCTTTTACACTTACATAT+AGG + chr1_2:13043549-13043568 Msa0057140:intron 30.0%
! CGCTTTTACACTTACATATA+GGG + chr1_2:13043550-13043569 Msa0057140:intron 30.0%
ATTGTGTTGAGTCGTAAAAT+CGG + chr1_2:13043830-13043849 Msa0057140:intron 30.0%
AGAAAGAAAGAAGAGTTACA+AGG + chr1_2:13044066-13044085 Msa0057140:intron 30.0%
!!! AGGAAATTGGATTTTTCAAG+TGG + chr1_2:13044173-13044192 Msa0057140:intron 30.0%
TAAGGTGTGTTTGATCAATT+AGG - chr1_2:13044337-13044356 None:intergenic 30.0%
! TAGCACATGGTAAACTTTTA+TGG - chr1_2:13044367-13044386 None:intergenic 30.0%
!!! TAGATGAGGTGAGAATTTTT+TGG - chr1_2:13044456-13044475 None:intergenic 30.0%
!! CCTGCTAATTTTAAAAGCAT+AGG - chr1_2:13044888-13044907 None:intergenic 30.0%
!!! CCTATGCTTTTAAAATTAGC+AGG + chr1_2:13044885-13044904 Msa0057140:intron 30.0%
TCTTCCATCTGTTATGATTT+AGG + chr1_2:13044990-13045009 Msa0057140:intron 30.0%
CTGCAAAGAACAATAAAACA+CGG - chr1_2:13045077-13045096 None:intergenic 30.0%
TTTATTGTTCTTTGCAGTGT+CGG + chr1_2:13045080-13045099 Msa0057140:intron 30.0%
! ATGCTGTTCTCTATTGTTTT+TGG + chr1_2:13045371-13045390 Msa0057140:intron 30.0%
AATTTGACAAACTTCAAAGG+AGG - chr1_2:13045546-13045565 None:intergenic 30.0%
! TTGACTTTTAAACCATGTGA+AGG + chr1_2:13045700-13045719 Msa0057140:intron 30.0%
AAACGAATTATACCTTCACA+TGG - chr1_2:13045715-13045734 None:intergenic 30.0%
! AGGTTGCATTTTCATAAAAC+AGG - chr1_2:13045744-13045763 None:intergenic 30.0%
AAAGTGATACAAGATCAGAA+GGG + chr1_2:13045839-13045858 Msa0057140:intron 30.0%
!!! TAATTTTCTAGTTCCCCTTT+TGG + chr1_2:13045955-13045974 Msa0057140:intron 30.0%
ATTTGAACTTAAGGTGCAAT+GGG - chr1_2:13046127-13046146 None:intergenic 30.0%
AATTTGAACTTAAGGTGCAA+TGG - chr1_2:13046128-13046147 None:intergenic 30.0%
GTGCTGTAAATTTGAACTTA+AGG - chr1_2:13046136-13046155 None:intergenic 30.0%
TGTAGACTTGTGAAGAAAAA+TGG + chr1_2:13046168-13046187 Msa0057140:intron 30.0%
TGTATTAACACTCAATCAAG+AGG - chr1_2:13046211-13046230 None:intergenic 30.0%
TTGGTATTGTTGCCATAATT+GGG + chr1_2:13046254-13046273 Msa0057140:intron 30.0%
!! TCACCCTTTTGTTTCTTATT+TGG + chr1_2:13046393-13046412 Msa0057140:intron 30.0%
GTGTTAATATGCACATATCT+TGG + chr1_2:13046644-13046663 Msa0057140:intron 30.0%
!! AGGGTGAGTTTATTTTCATA+CGG - chr1_2:13046764-13046783 None:intergenic 30.0%
TGAAATCTCAACAGTTAATG+AGG + chr1_2:13046878-13046897 Msa0057140:intron 30.0%
GGTGAATATTAATAATGAGG+TGG + chr1_2:13047033-13047052 Msa0057140:CDS 30.0%
CTAATAACTACTCTTCTTCT+TGG - chr1_2:13047115-13047134 None:intergenic 30.0%
TGTTATTCCTGACTTATGTT+AGG + chr1_2:13047211-13047230 Msa0057140:three_prime_UTR 30.0%
GTTATTCCTGACTTATGTTA+GGG + chr1_2:13047212-13047231 Msa0057140:three_prime_UTR 30.0%
!! AAGTACAGTTTTATACACCA+TGG - chr1_2:13047246-13047265 None:intergenic 30.0%
AAAGGAACCAGAATTAGAAG+CGG - chr1_2:13042443-13042462 None:intergenic 35.0%
!!! AACTTTTTTCGCTGTGTTCA+AGG + chr1_2:13042571-13042590 Msa0057140:five_prime_UTR 35.0%
! AAGGTATTCTCTTCCTTGTT+CGG + chr1_2:13042590-13042609 Msa0057140:intron 35.0%
AATCTGAAAAGATCCGAACA+AGG - chr1_2:13042606-13042625 None:intergenic 35.0%
! TGTTCGGATCTTTTCAGATT+TGG + chr1_2:13042606-13042625 Msa0057140:intron 35.0%
! GTTCGGATCTTTTCAGATTT+GGG + chr1_2:13042607-13042626 Msa0057140:intron 35.0%
AGGGTTTCAAACCTTTGAAT+TGG + chr1_2:13042726-13042745 Msa0057140:intron 35.0%
GGGTTTCAAACCTTTGAATT+GGG + chr1_2:13042727-13042746 Msa0057140:intron 35.0%
GGTTTCAAACCTTTGAATTG+GGG + chr1_2:13042728-13042747 Msa0057140:intron 35.0%
TAAAAATGGCCCCAATTCAA+AGG - chr1_2:13042740-13042759 None:intergenic 35.0%
!! CTGCAATTTTAGAGGATTAG+GGG + chr1_2:13042798-13042817 Msa0057140:intron 35.0%
!!! CTGTTTTGATTTTGGCTGTT+TGG + chr1_2:13043184-13043203 Msa0057140:intron 35.0%
TTGTTTGACATGTATCGTAC+AGG - chr1_2:13043493-13043512 None:intergenic 35.0%
GTAAAAGCGAGCAGAAAAAA+AGG - chr1_2:13043539-13043558 None:intergenic 35.0%
! TAACTTTTCGGTATAGTAGG+TGG + chr1_2:13043643-13043662 Msa0057140:intron 35.0%
GTATAGTAGGTGGATGAATT+AGG + chr1_2:13043653-13043672 Msa0057140:intron 35.0%
GGATGAATTAGGTGAAAAAC+TGG + chr1_2:13043664-13043683 Msa0057140:intron 35.0%
GAAAGAAGAGTTACAAGGAT+CGG + chr1_2:13044071-13044090 Msa0057140:intron 35.0%
AAAGAAGAGTTACAAGGATC+GGG + chr1_2:13044072-13044091 Msa0057140:intron 35.0%
ATAACCCGTCTTACTCTAAT+GGG + chr1_2:13044102-13044121 Msa0057140:intron 35.0%
GAGGGCTTGTAAAAAAATGA+AGG + chr1_2:13044240-13044259 Msa0057140:intron 35.0%
GAATAGCAAAGAATAGCACA+TGG - chr1_2:13044380-13044399 None:intergenic 35.0%
GTTGATCTATTAGACACACA+AGG - chr1_2:13044405-13044424 None:intergenic 35.0%
!!! TGAGGTGAGAATTTTTTGGA+AGG - chr1_2:13044452-13044471 None:intergenic 35.0%
TGCAAGTGAATGAATAGATG+AGG - chr1_2:13044470-13044489 None:intergenic 35.0%
CTTCCAATCCTTATAGGAAT+CGG - chr1_2:13044494-13044513 None:intergenic 35.0%
TTGACTCTTCCAATCCTTAT+AGG - chr1_2:13044500-13044519 None:intergenic 35.0%
AGGAAAATATGGAAGGAGAA+AGG - chr1_2:13044591-13044610 None:intergenic 35.0%
ATGTCGTAGGAAAATATGGA+AGG - chr1_2:13044598-13044617 None:intergenic 35.0%
GGAAATGTCGTAGGAAAATA+TGG - chr1_2:13044602-13044621 None:intergenic 35.0%
! ATTTGAAGTGGAAATGTCGT+AGG - chr1_2:13044611-13044630 None:intergenic 35.0%
! TTTTACGCATAATTGGCAAG+CGG - chr1_2:13044830-13044849 None:intergenic 35.0%
ACTGACATCGCTATATATGA+TGG - chr1_2:13044865-13044884 None:intergenic 35.0%
!!! TTTTAAAATTAGCAGGGTCC+AGG + chr1_2:13044892-13044911 Msa0057140:intron 35.0%
AATCGAATTGTGTCTTCACA+TGG - chr1_2:13045231-13045250 None:intergenic 35.0%
CATATTAGCACTCAATCAAG+AGG - chr1_2:13045280-13045299 None:intergenic 35.0%
GTGCTAATATGCACATAAGT+TGG + chr1_2:13045289-13045308 Msa0057140:intron 35.0%
! TTGCTTGCTAAGCAGAAAAA+AGG + chr1_2:13045567-13045586 Msa0057140:CDS 35.0%
GAAAGTGATACAAGATCAGA+AGG + chr1_2:13045838-13045857 Msa0057140:intron 35.0%
GTTCATTGAGATGAGAGTTA+TGG - chr1_2:13045881-13045900 None:intergenic 35.0%
CTTGGTATTGTTGCCATAAT+TGG + chr1_2:13046253-13046272 Msa0057140:intron 35.0%
AAAAAAAAAAGGATGAGGCG+AGG - chr1_2:13046342-13046361 None:intergenic 35.0%
TTGGTATTGTTGCCATACTT+GGG + chr1_2:13046663-13046682 Msa0057140:intron 35.0%
TGGGATAAATTTCCCAAGTA+TGG - chr1_2:13046678-13046697 None:intergenic 35.0%
! TTATTTTCATACGGCTGAAG+AGG - chr1_2:13046755-13046774 None:intergenic 35.0%
ATATCAATTTCCAAACCCAC+AGG + chr1_2:13046958-13046977 Msa0057140:intron 35.0%
ATTCATATGGCATAATCGTG+CGG + chr1_2:13046999-13047018 Msa0057140:CDS 35.0%
CACTTATTTCATCAGCTCAT+GGG - chr1_2:13047074-13047093 None:intergenic 35.0%
CATGAGCTGATGAAATAAGT+GGG + chr1_2:13047073-13047092 Msa0057140:exon 35.0%
AAATAAGTGGGACGAAGAAT+GGG + chr1_2:13047085-13047104 Msa0057140:exon 35.0%
GGTTAACATGCACTCTTGTT+TGG + chr1_2:13043095-13043114 Msa0057140:intron 40.0%
CCAATTTGAACAACACAGGA+GGG - chr1_2:13043349-13043368 None:intergenic 40.0%
AGTGCCAATTTGAACAACAC+AGG - chr1_2:13043353-13043372 None:intergenic 40.0%
ATCGTACTCATGATCGTTGA+GGG - chr1_2:13043876-13043895 None:intergenic 40.0%
AATCGTACTCATGATCGTTG+AGG - chr1_2:13043877-13043896 None:intergenic 40.0%
ACGAGTTATTCTGTTACGAC+TGG - chr1_2:13043979-13043998 None:intergenic 40.0%
AACAGAATAACTCGTGACGA+TGG + chr1_2:13043984-13044003 Msa0057140:intron 40.0%
TAACTCATCTCCAACCATAG+AGG - chr1_2:13044010-13044029 None:intergenic 40.0%
! ATGACCCTTTTCAGAGGTTA+GGG + chr1_2:13044041-13044060 Msa0057140:intron 40.0%
! CTAACCCTAACCTCTGAAAA+GGG - chr1_2:13044048-13044067 None:intergenic 40.0%
! TCTAACCCTAACCTCTGAAA+AGG - chr1_2:13044049-13044068 None:intergenic 40.0%
GATAACCCGTCTTACTCTAA+TGG + chr1_2:13044101-13044120 Msa0057140:intron 40.0%
TTCTGCCCATTAGAGTAAGA+CGG - chr1_2:13044110-13044129 None:intergenic 40.0%
!! TGTTTGGGAGTTTTGATGAG+AGG + chr1_2:13044221-13044240 Msa0057140:intron 40.0%
!! GTTTGGGAGTTTTGATGAGA+GGG + chr1_2:13044222-13044241 Msa0057140:intron 40.0%
AAAGAATGAAGAGCGAGCTT+TGG + chr1_2:13044272-13044291 Msa0057140:intron 40.0%
AAGAATGAAGAGCGAGCTTT+GGG + chr1_2:13044273-13044292 Msa0057140:intron 40.0%
GGTGTGTTTGATCAATTAGG+AGG - chr1_2:13044334-13044353 None:intergenic 40.0%
! GGTGAGTCACTTTCTGTATA+AGG - chr1_2:13044431-13044450 None:intergenic 40.0%
! ACTTGCAACCGATTCCTATA+AGG + chr1_2:13044483-13044502 Msa0057140:intron 40.0%
! CAACCGATTCCTATAAGGAT+TGG + chr1_2:13044488-13044507 Msa0057140:intron 40.0%
TCGCATGCAATTATGGAAGA+CGG - chr1_2:13044567-13044586 None:intergenic 40.0%
GAAAGGATCGCATGCAATTA+TGG - chr1_2:13044574-13044593 None:intergenic 40.0%
ATAAAACACGGACTCTGACA+CGG - chr1_2:13045065-13045084 None:intergenic 40.0%
TAACTATGAAGCACAGACTC+CGG - chr1_2:13045140-13045159 None:intergenic 40.0%
! GAATGACATTGGCTGAAGTA+TGG - chr1_2:13045338-13045357 None:intergenic 40.0%
GATGAGATGAATGCTACATG+AGG - chr1_2:13046001-13046020 None:intergenic 40.0%
TAGCATTCATCTCATCAGCT+TGG + chr1_2:13046005-13046024 Msa0057140:intron 40.0%
! GGATTCTGAGAAATCAACTG+AGG - chr1_2:13046062-13046081 None:intergenic 40.0%
TGGGCTGAATTTCCCAATTA+TGG - chr1_2:13046269-13046288 None:intergenic 40.0%
GAAAGAATTGCGTCTTCACA+TGG - chr1_2:13046587-13046606 None:intergenic 40.0%
CTTGGTATTGTTGCCATACT+TGG + chr1_2:13046662-13046681 Msa0057140:intron 40.0%
CCACTTATTTCATCAGCTCA+TGG - chr1_2:13047075-13047094 None:intergenic 40.0%
CCATGAGCTGATGAAATAAG+TGG + chr1_2:13047072-13047091 Msa0057140:exon 40.0%
GAAATAAGTGGGACGAAGAA+TGG + chr1_2:13047084-13047103 Msa0057140:exon 40.0%
AGCATTCCCTAACATAAGTC+AGG - chr1_2:13047221-13047240 None:intergenic 40.0%
GAACGAGCGGACAAAGAAAA+AGG - chr1_2:13042470-13042489 None:intergenic 45.0%
AATAGCGAAGAACGAACGAG+CGG - chr1_2:13042483-13042502 None:intergenic 45.0%
GAAAAAAGTTGTTGCACGCG+CGG - chr1_2:13042561-13042580 None:intergenic 45.0%
! CCCTCCTGTGTTGTTCAAAT+TGG + chr1_2:13043346-13043365 Msa0057140:CDS 45.0%
GCCAATTTGAACAACACAGG+AGG - chr1_2:13043350-13043369 None:intergenic 45.0%
TGCTCTTTGTCTCTGCAAGA+TGG + chr1_2:13043432-13043451 Msa0057140:intron 45.0%
TGGAATCACAGAGGATCGAT+TGG - chr1_2:13043959-13043978 None:intergenic 45.0%
TGTTACGACTGGAATCACAG+AGG - chr1_2:13043968-13043987 None:intergenic 45.0%
! GATGACCCTTTTCAGAGGTT+AGG + chr1_2:13044040-13044059 Msa0057140:intron 45.0%
TCTGCCCATTAGAGTAAGAC+GGG - chr1_2:13044109-13044128 None:intergenic 45.0%
! ATGCGCATTATGGCTCTGTT+TGG + chr1_2:13044205-13044224 Msa0057140:intron 45.0%
! TGCGCATTATGGCTCTGTTT+GGG + chr1_2:13044206-13044225 Msa0057140:intron 45.0%
! AAGAGGAAAGAGAGGTGTAG+TGG - chr1_2:13044535-13044554 None:intergenic 45.0%
GAAAGAGGAAGAGGAAAGAG+AGG - chr1_2:13044543-13044562 None:intergenic 45.0%
ATTATGGAAGACGGGGAAAG+AGG - chr1_2:13044558-13044577 None:intergenic 45.0%
GCATGCAATTATGGAAGACG+GGG - chr1_2:13044565-13044584 None:intergenic 45.0%
CGCATGCAATTATGGAAGAC+GGG - chr1_2:13044566-13044585 None:intergenic 45.0%
TTCAAGCACAGACTTCGAGA+CGG - chr1_2:13044931-13044950 None:intergenic 45.0%
!! AGATCAGAAGGGTACTCTTC+AGG + chr1_2:13045850-13045869 Msa0057140:intron 45.0%
ATGACCTCAGTGTGCCAAAA+GGG - chr1_2:13045972-13045991 None:intergenic 45.0%
AATGACCTCAGTGTGCCAAA+AGG - chr1_2:13045973-13045992 None:intergenic 45.0%
TTGGCACACTGAGGTCATTA+AGG + chr1_2:13045974-13045993 Msa0057140:intron 45.0%
!! TCCACAACAACAGCCTTGTT+GGG + chr1_2:13046034-13046053 Msa0057140:intron 45.0%
ATCAACTGAGGAACCCAACA+AGG - chr1_2:13046050-13046069 None:intergenic 45.0%
GAAGCTTGACGTGAAGATTG+TGG - chr1_2:13046098-13046117 None:intergenic 45.0%
TTTCCCTGCTGTTGTTCGTA+AGG + chr1_2:13046844-13046863 Msa0057140:CDS 45.0%
TTGCCTTACGAACAACAGCA+GGG - chr1_2:13046850-13046869 None:intergenic 45.0%
TCTGCTGGGAGGAATTCATA+TGG + chr1_2:13046986-13047005 Msa0057140:CDS 45.0%
ATATGGCATAATCGTGCGGA+AGG + chr1_2:13047003-13047022 Msa0057140:CDS 45.0%
ATGTTAGGGAATGCTCTCCA+TGG + chr1_2:13047226-13047245 Msa0057140:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTCAATTAT+TGG + chr1_2:13042915-13042934 Msa0057140:intron 5.0%
!! AAAAAAAACTAATTTATAAA+CGG - chr1_2:13044139-13044158 None:intergenic 5.0%
!! AAGTTAAAAAAAAAAAAAAA+AGG - chr1_2:13046353-13046372 None:intergenic 5.0%
CTCTCCACCGCTTCTAATTC+TGG + chr1_2:13042433-13042452 Msa0057140:five_prime_UTR 50.0%
GGAACCAGAATTAGAAGCGG+TGG - chr1_2:13042440-13042459 None:intergenic 50.0%
GCATTGTTGCCGCCATACTT+GGG + chr1_2:13043117-13043136 Msa0057140:intron 50.0%
GAACAACACAGGAGGGTTCT+TGG - chr1_2:13043342-13043361 None:intergenic 50.0%
CTCTGCAAGATGGACACCTT+TGG + chr1_2:13043442-13043461 Msa0057140:intron 50.0%
CCTAGCACGCATAATGCCAA+AGG - chr1_2:13043461-13043480 None:intergenic 50.0%
CCTTTGGCATTATGCGTGCT+AGG + chr1_2:13043458-13043477 Msa0057140:intron 50.0%
CATTATGCGTGCTAGGTGTC+TGG + chr1_2:13043465-13043484 Msa0057140:intron 50.0%
GGAGATGAGTTACAGTTCGC+AGG + chr1_2:13044018-13044037 Msa0057140:intron 50.0%
GCTGCATGCAATGCGCATTA+TGG + chr1_2:13044195-13044214 Msa0057140:intron 50.0%
!! ATGAAGAGCGAGCTTTGGGA+AGG + chr1_2:13044277-13044296 Msa0057140:intron 50.0%
!! TGAAGAGCGAGCTTTGGGAA+GGG + chr1_2:13044278-13044297 Msa0057140:intron 50.0%
TGACCTCAGTGTGCCAAAAG+GGG - chr1_2:13045971-13045990 None:intergenic 50.0%
CAACAAGGCTGTTGTTGTGG+AGG - chr1_2:13046035-13046054 None:intergenic 50.0%
! CTCCACAACAACAGCCTTGT+TGG + chr1_2:13046033-13046052 Msa0057140:intron 50.0%
ACCCAACAAGGCTGTTGTTG+TGG - chr1_2:13046038-13046057 None:intergenic 50.0%
! GATTGTGGTGGTTGGTCATG+TGG - chr1_2:13046083-13046102 None:intergenic 50.0%
GACGTGAAGATTGTGGTGGT+TGG - chr1_2:13046091-13046110 None:intergenic 50.0%
GCTTGACGTGAAGATTGTGG+TGG - chr1_2:13046095-13046114 None:intergenic 50.0%
CTTGCCTTACGAACAACAGC+AGG - chr1_2:13046851-13046870 None:intergenic 50.0%
GCAGAACAATCCTGTGGGTT+TGG - chr1_2:13046971-13046990 None:intergenic 50.0%
AACCCACAGGATTGTTCTGC+TGG + chr1_2:13046971-13046990 Msa0057140:intron 50.0%
ACCCACAGGATTGTTCTGCT+GGG + chr1_2:13046972-13046991 Msa0057140:intron 50.0%
TCCCAGCAGAACAATCCTGT+GGG - chr1_2:13046976-13046995 None:intergenic 50.0%
AAGTGGGACGAAGAATGGGA+TGG + chr1_2:13047089-13047108 Msa0057140:exon 50.0%
GGCATTGTTGCCGCCATACT+TGG + chr1_2:13043116-13043135 Msa0057140:intron 55.0%
ACTCGTGACGATGGCCTCTA+TGG + chr1_2:13043993-13044012 Msa0057140:intron 55.0%
GTGACGATGGCCTCTATGGT+TGG + chr1_2:13043997-13044016 Msa0057140:intron 55.0%
! CGCAGGATGACCCTTTTCAG+AGG + chr1_2:13044035-13044054 Msa0057140:intron 55.0%
GAAGACGGGGAAAGAGGAAG+AGG - chr1_2:13044552-13044571 None:intergenic 55.0%
AGACTTCGAGACGGACACCT+GGG - chr1_2:13044922-13044941 None:intergenic 55.0%
CACGGACACCTGACACGATA+CGG - chr1_2:13045109-13045128 None:intergenic 55.0%
! GTTCCCCTTTTGGCACACTG+AGG + chr1_2:13045965-13045984 Msa0057140:intron 55.0%
CTCCCAGCAGAACAATCCTG+TGG - chr1_2:13046977-13046996 None:intergenic 55.0%
CACAGGATTGTTCTGCTGGG+AGG + chr1_2:13046975-13046994 Msa0057140:intron 55.0%
AATCGTGCGGAAGGCTTCTC+AGG + chr1_2:13047012-13047031 Msa0057140:CDS 55.0%
!! AGAGCGAGCTTTGGGAAGGG+AGG + chr1_2:13044281-13044300 Msa0057140:intron 60.0%
GACTTCGAGACGGACACCTG+GGG - chr1_2:13044921-13044940 None:intergenic 60.0%
CAGACTTCGAGACGGACACC+TGG - chr1_2:13044923-13044942 None:intergenic 60.0%
GTCGGAGTCCGTATCGTGTC+AGG + chr1_2:13045098-13045117 Msa0057140:intron 60.0%
! AGGTGTCCGTGTCGCTGTGC+CGG + chr1_2:13045118-13045137 Msa0057140:intron 65.0%
CAGACTCCGGCACAGCGACA+CGG - chr1_2:13045127-13045146 None:intergenic 65.0%
AGCAGGGTCCAGGTGTCCCC+AGG + chr1_2:13044902-13044921 Msa0057140:intron 70.0%
GACGGACACCTGGGGACACC+TGG - chr1_2:13044913-13044932 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 13042370 13047338 13042370 ID=Msa0057140;Name=Msa0057140
chr1_2 mRNA 13042370 13047338 13042370 ID=Msa0057140-mRNA-1;Parent=Msa0057140;Name=Msa0057140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=143|1|1|1|0.5|0.42|7|248|141
chr1_2 exon 13042370 13042454 13042370 ID=Msa0057140-mRNA-1:exon:5064;Parent=Msa0057140-mRNA-1
chr1_2 exon 13042543 13042592 13042543 ID=Msa0057140-mRNA-1:exon:5065;Parent=Msa0057140-mRNA-1
chr1_2 exon 13043294 13043395 13043294 ID=Msa0057140-mRNA-1:exon:5066;Parent=Msa0057140-mRNA-1
chr1_2 exon 13045493 13045594 13045493 ID=Msa0057140-mRNA-1:exon:5067;Parent=Msa0057140-mRNA-1
chr1_2 exon 13046432 13046500 13046432 ID=Msa0057140-mRNA-1:exon:5068;Parent=Msa0057140-mRNA-1
chr1_2 exon 13046816 13046865 13046816 ID=Msa0057140-mRNA-1:exon:5069;Parent=Msa0057140-mRNA-1
chr1_2 exon 13046980 13047338 13046980 ID=Msa0057140-mRNA-1:exon:5070;Parent=Msa0057140-mRNA-1
chr1_2 five_prime_UTR 13042370 13042454 13042370 ID=Msa0057140-mRNA-1:five_prime_utr;Parent=Msa0057140-mRNA-1
chr1_2 five_prime_UTR 13042543 13042592 13042543 ID=Msa0057140-mRNA-1:five_prime_utr;Parent=Msa0057140-mRNA-1
chr1_2 five_prime_UTR 13043294 13043301 13043294 ID=Msa0057140-mRNA-1:five_prime_utr;Parent=Msa0057140-mRNA-1
chr1_2 CDS 13043302 13043395 13043302 ID=Msa0057140-mRNA-1:cds;Parent=Msa0057140-mRNA-1
chr1_2 CDS 13045493 13045594 13045493 ID=Msa0057140-mRNA-1:cds;Parent=Msa0057140-mRNA-1
chr1_2 CDS 13046432 13046500 13046432 ID=Msa0057140-mRNA-1:cds;Parent=Msa0057140-mRNA-1
chr1_2 CDS 13046816 13046865 13046816 ID=Msa0057140-mRNA-1:cds;Parent=Msa0057140-mRNA-1
chr1_2 CDS 13046980 13047090 13046980 ID=Msa0057140-mRNA-1:cds;Parent=Msa0057140-mRNA-1
chr1_2 three_prime_UTR 13047091 13047338 13047091 ID=Msa0057140-mRNA-1:three_prime_utr;Parent=Msa0057140-mRNA-1
Gene Sequence

>Msa0057140

ATGAAGTGTCGCTCAAAAAACGACAAAAATGAAGTTGCCAAGAACCCTCCTGTGTTGTTCAAATTGGCACTTGCTAAGATGAAAAAAGAAGAAAAATTGGCTTTGCTTCGCTCGAAAGACAACAAAAATGAAGTTGCTAAGAAGCCTCCTTTGAAGTTTGTCAAATTGTTGCTTGCTAAGCAGAAAAAAGGAGAAAAAATTGCTAAGGAGCGTCGTCGCTCAAAAAACATCAAAAATGAAGTTGCTAAGAAGCAAAAAGCAAAAAAATCTATTAAGAGATTGTCGACGACTGTTTTCCCTGCTGTTGTTCGTAAGGATTGTTCTGCTGGGAGGAATTCATATGGCATAATCGTGCGGAAGGCTTCTCAGGTGAATATTAATAATGAGGTGGCTACTGATATGAAAACCCATGAGCTGATGAAATAA

Protein sequence

>Msa0057140

MKCRSKNDKNEVAKNPPVLFKLALAKMKKEEKLALLRSKDNKNEVAKKPPLKFVKLLLAKQKKGEKIAKERRRSKNIKNEVAKKQKAKKSIKRLSTTVFPAVVRKDCSAGRNSYGIIVRKASQVNINNEVATDMKTHELMK*