Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456500 | XP_004499596.1 | 56.735 | 631 | 195 | 11 | 50 | 655 | 1311 | 1888 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456500 | A0A1S2Y717 | 56.735 | 631 | 195 | 11 | 50 | 655 | 1311 | 1888 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001510 | Msa0456500 | -0.814425 | 1.550495e-51 | -8.615850e-47 |
| Msa0199490 | Msa0456500 | -0.815363 | 9.608469e-52 | -8.615850e-47 |
| Msa0373640 | Msa0456500 | -0.809649 | 1.705006e-50 | -8.615850e-47 |
| Msa0456500 | Msa0630090 | -0.811252 | 7.683524e-51 | -8.615850e-47 |
| Msa0456500 | Msa1047300 | 0.805262 | 1.453140e-49 | -8.615850e-47 |
| Msa0456500 | Msa1047340 | 0.804178 | 2.447582e-49 | -8.615850e-47 |
| Msa0456500 | Msa1191350 | 0.803763 | 2.984145e-49 | -8.615850e-47 |
| Msa0456500 | Msa1204900 | -0.802777 | 4.776477e-49 | -8.615850e-47 |
| Msa0456500 | Msa1238250 | 0.804481 | 2.116058e-49 | -8.615850e-47 |
| Msa0456500 | Msa1256490 | -0.806348 | 8.593332e-50 | -8.615850e-47 |
| Msa0456500 | Msa1296810 | -0.804238 | 2.377269e-49 | -8.615850e-47 |
| Msa0456500 | Msa1319030 | 0.815282 | 1.001527e-51 | -8.615850e-47 |
| Msa0456500 | Msa1338810 | -0.803838 | 2.879376e-49 | -8.615850e-47 |
| Msa0456500 | Msa1375570 | -0.821948 | 3.077633e-53 | -8.615850e-47 |
| Msa0292060 | Msa0456500 | -0.806961 | 6.379956e-50 | -8.615850e-47 |
| Msa0319340 | Msa0456500 | -0.800347 | 1.504333e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456500 | MtrunA17_Chr3g0107931 | 55.935 | 615 | 206 | 15 | 50 | 655 | 1329 | 1887 | 0.0 | 588 |
| Msa0456500 | MtrunA17_Chr3g0091861 | 51.064 | 658 | 212 | 13 | 50 | 646 | 1256 | 1864 | 1.09e-176 | 549 |
| Msa0456500 | MtrunA17_Chr3g0105521 | 45.095 | 632 | 202 | 19 | 50 | 655 | 1093 | 1605 | 2.20e-128 | 414 |
| Msa0456500 | MtrunA17_Chr3g0108171 | 57.143 | 420 | 115 | 5 | 238 | 655 | 1611 | 1967 | 2.35e-127 | 414 |
| Msa0456500 | MtrunA17_Chr3g0108171 | 45.513 | 468 | 169 | 14 | 50 | 499 | 1227 | 1626 | 3.56e-90 | 307 |
| Msa0456500 | MtrunA17_Chr3g0105591 | 55.335 | 403 | 132 | 7 | 267 | 655 | 67 | 435 | 1.75e-126 | 381 |
| Msa0456500 | MtrunA17_Chr3g0108071 | 43.189 | 602 | 228 | 15 | 50 | 625 | 448 | 961 | 1.95e-126 | 397 |
| Msa0456500 | MtrunA17_Chr3g0107261 | 55.276 | 398 | 135 | 4 | 301 | 655 | 2 | 399 | 3.19e-126 | 379 |
| Msa0456500 | MtrunA17_Chr3g0108091 | 43.154 | 577 | 221 | 14 | 75 | 625 | 3 | 498 | 8.08e-126 | 382 |
| Msa0456500 | MtrunA17_Chr3g0097011 | 50.989 | 455 | 119 | 8 | 236 | 655 | 12 | 397 | 9.22e-125 | 375 |
| Msa0456500 | MtrunA17_Chr3g0105551 | 56.965 | 402 | 130 | 7 | 268 | 655 | 1492 | 1864 | 5.83e-117 | 384 |
| Msa0456500 | MtrunA17_Chr3g0105551 | 50.000 | 170 | 68 | 5 | 48 | 209 | 1209 | 1369 | 6.00e-34 | 139 |
| Msa0456500 | MtrunA17_Chr3g0105551 | 49.438 | 89 | 45 | 0 | 293 | 381 | 1405 | 1493 | 1.08e-14 | 78.2 |
| Msa0456500 | MtrunA17_Chr3g0108811 | 39.150 | 659 | 299 | 19 | 50 | 655 | 1321 | 1930 | 6.33e-103 | 344 |
| Msa0456500 | MtrunA17_Chr3g0087641 | 52.394 | 355 | 123 | 5 | 250 | 598 | 32 | 346 | 1.60e-102 | 316 |
| Msa0456500 | MtrunA17_Chr2g0304131 | 61.567 | 268 | 91 | 2 | 400 | 655 | 48 | 315 | 5.03e-101 | 311 |
| Msa0456500 | MtrunA17_Chr3g0105471 | 63.710 | 248 | 77 | 3 | 413 | 655 | 7 | 246 | 4.86e-95 | 293 |
| Msa0456500 | MtrunA17_Chr3g0108151 | 54.335 | 346 | 102 | 6 | 311 | 655 | 1253 | 1543 | 3.85e-90 | 306 |
| Msa0456500 | MtrunA17_Chr3g0108151 | 66.667 | 126 | 40 | 2 | 50 | 173 | 1074 | 1199 | 1.88e-41 | 162 |
| Msa0456500 | MtrunA17_Chr3g0108761 | 72.917 | 192 | 38 | 1 | 464 | 655 | 3 | 180 | 2.75e-87 | 270 |
| Msa0456500 | MtrunA17_Chr3g0108011 | 46.759 | 432 | 139 | 11 | 50 | 423 | 1324 | 1722 | 6.21e-87 | 298 |
| Msa0456500 | MtrunA17_Chr3g0091851 | 56.491 | 285 | 106 | 3 | 371 | 655 | 1049 | 1315 | 7.25e-87 | 296 |
| Msa0456500 | MtrunA17_Chr3g0107641 | 72.105 | 190 | 52 | 1 | 466 | 655 | 4 | 192 | 3.89e-85 | 265 |
| Msa0456500 | MtrunA17_Chr3g0108821 | 58.478 | 289 | 92 | 5 | 381 | 655 | 1528 | 1802 | 1.09e-82 | 285 |
| Msa0456500 | MtrunA17_Chr3g0108821 | 50.196 | 255 | 97 | 10 | 50 | 300 | 1300 | 1528 | 1.32e-52 | 196 |
| Msa0456500 | MtrunA17_Chr3g0108111 | 47.436 | 312 | 122 | 9 | 50 | 334 | 252 | 548 | 4.02e-70 | 239 |
| Msa0456500 | MtrunA17_Chr3g0096771 | 53.036 | 247 | 81 | 5 | 421 | 655 | 66 | 289 | 9.86e-68 | 223 |
| Msa0456500 | MtrunA17_Chr3g0107171 | 67.683 | 164 | 46 | 2 | 494 | 655 | 225 | 383 | 6.23e-64 | 216 |
| Msa0456500 | MtrunA17_Chr7g0223911 | 61.446 | 166 | 55 | 2 | 492 | 655 | 2 | 160 | 3.79e-58 | 193 |
| Msa0456500 | MtrunA17_Chr7g0229711 | 59.627 | 161 | 42 | 3 | 483 | 643 | 2 | 139 | 6.54e-50 | 170 |
| Msa0456500 | MtrunA17_Chr3g0107271 | 62.590 | 139 | 48 | 3 | 50 | 187 | 104 | 239 | 5.78e-46 | 163 |
| Msa0456500 | MtrunA17_Chr3g0105481 | 35.577 | 416 | 131 | 15 | 48 | 442 | 1123 | 1422 | 1.58e-42 | 166 |
| Msa0456500 | MtrunA17_Chr3g0096701 | 59.420 | 138 | 54 | 2 | 50 | 185 | 74 | 211 | 6.26e-42 | 162 |
| Msa0456500 | MtrunA17_Chr3g0096701 | 30.151 | 398 | 227 | 13 | 81 | 465 | 42 | 401 | 2.91e-26 | 114 |
| Msa0456500 | MtrunA17_Chr3g0107201 | 35.938 | 384 | 137 | 11 | 92 | 465 | 2 | 286 | 2.62e-41 | 159 |
| Msa0456500 | MtrunA17_Chr3g0107081 | 53.676 | 136 | 53 | 1 | 50 | 185 | 69 | 194 | 1.08e-39 | 145 |
| Msa0456500 | MtrunA17_Chr3g0097601 | 54.962 | 131 | 58 | 1 | 50 | 179 | 107 | 237 | 4.64e-36 | 136 |
| Msa0456500 | MtrunA17_Chr3g0105601 | 55.556 | 135 | 49 | 3 | 48 | 174 | 329 | 460 | 5.86e-34 | 136 |
| Msa0456500 | MtrunA17_Chr3g0105501 | 47.333 | 150 | 59 | 5 | 52 | 188 | 66 | 208 | 1.45e-32 | 125 |
| Msa0456500 | MtrunA17_Chr3g0112521 | 76.056 | 71 | 17 | 0 | 570 | 640 | 6 | 76 | 3.99e-30 | 113 |
| Msa0456500 | MtrunA17_Chr3g0109131 | 72.368 | 76 | 21 | 0 | 580 | 655 | 97 | 172 | 3.03e-28 | 111 |
| Msa0456500 | MtrunA17_Chr2g0288311 | 63.918 | 97 | 28 | 3 | 52 | 146 | 55 | 146 | 1.87e-26 | 106 |
| Msa0456500 | MtrunA17_Chr3g0096801 | 43.671 | 158 | 58 | 5 | 92 | 237 | 2 | 140 | 4.26e-26 | 104 |
| Msa0456500 | MtrunA17_Chr3g0096791 | 42.105 | 171 | 83 | 5 | 301 | 465 | 2 | 162 | 2.34e-21 | 95.1 |
| Msa0456500 | MtrunA17_Chr3g0105491 | 56.250 | 80 | 21 | 2 | 583 | 655 | 1 | 73 | 5.28e-18 | 79.0 |
| Msa0456500 | MtrunA17_Chr1g0160951 | 34.058 | 138 | 82 | 3 | 51 | 182 | 1101 | 1235 | 1.26e-16 | 84.7 |
| Msa0456500 | MtrunA17_Chr5g0439121 | 31.008 | 258 | 129 | 11 | 50 | 296 | 1385 | 1604 | 4.10e-16 | 82.8 |
| Msa0456500 | MtrunA17_Chr3g0100241 | 33.813 | 139 | 80 | 4 | 52 | 181 | 80 | 215 | 6.62e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 120 sgRNAs with CRISPR-Local
Find 469 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTACAAATTTCAAATT+TGG | 0.144092 | 3_3:-50099823 | None:intergenic |
| ACCATTAAAGATGTTGTTCT+TGG | 0.204874 | 3_3:+50102826 | Msa0456500:CDS |
| TCTTGAGAGAATTGCAAATT+AGG | 0.218392 | 3_3:-50103541 | None:intergenic |
| TTTGATTTGACCACATTATC+AGG | 0.255448 | 3_3:+50099979 | Msa0456500:CDS |
| GACATCCTCTAAAGCTGTTT+TGG | 0.258978 | 3_3:+50103675 | Msa0456500:CDS |
| TCCAAGAACAACATCTTTAA+TGG | 0.283831 | 3_3:-50102827 | None:intergenic |
| ACAATAAGTGCTTCAAGCTT+TGG | 0.302013 | 3_3:-50099661 | None:intergenic |
| ACTCTCCAAAACAGCTTTAG+AGG | 0.332497 | 3_3:-50103680 | None:intergenic |
| CTAACACGTCCAACACACTA+TGG | 0.343716 | 3_3:-50103420 | None:intergenic |
| GTTGGCAATAATACTATTGA+TGG | 0.347600 | 3_3:-50101833 | None:intergenic |
| CAATAAGTGCTTCAAGCTTT+GGG | 0.347776 | 3_3:-50099660 | None:intergenic |
| TACTACCCTCAAACCTTCTC+TGG | 0.355809 | 3_3:+50102040 | Msa0456500:CDS |
| TTAGAAGTAACTACTTGTAT+TGG | 0.366884 | 3_3:-50102268 | None:intergenic |
| CGGTGTCCAGACGGTGGGGC+TGG | 0.375598 | 3_3:+50096801 | Msa0456500:CDS |
| CCCAAGCCTCTGTCAGATAC+AGG | 0.383041 | 3_3:+50099855 | Msa0456500:CDS |
| ACCTTGGTCATTATTAGTCT+TGG | 0.387328 | 3_3:-50102866 | None:intergenic |
| TTCCTTAGTAACTCGTTGCT+TGG | 0.387547 | 3_3:-50103587 | None:intergenic |
| TAGCTCAGCTAGACAGTTGT+AGG | 0.394123 | 3_3:-50103380 | None:intergenic |
| CATAGTGTGTTGGACGTGTT+AGG | 0.400405 | 3_3:+50103421 | Msa0456500:CDS |
| ACTAATATTTCATCATCCTT+AGG | 0.407728 | 3_3:-50103032 | None:intergenic |
| ACCGATCCAGCCCCACCGTC+TGG | 0.416031 | 3_3:-50096807 | None:intergenic |
| CGTCCAACACACTATGGGTT+TGG | 0.420501 | 3_3:-50103414 | None:intergenic |
| TTGAGGAAGCTCATTACATA+TGG | 0.424197 | 3_3:-50099722 | None:intergenic |
| GGACAGATGTTTCTCGTGTT+CGG | 0.429552 | 3_3:+50096695 | None:intergenic |
| TAAATGAGTTGATGATGTTA+TGG | 0.436101 | 3_3:-50102434 | None:intergenic |
| AGTACCAGTATTGTGGCCTA+TGG | 0.439719 | 3_3:-50101592 | None:intergenic |
| TCCAGACGGTGGGGCTGGAT+CGG | 0.440067 | 3_3:+50096806 | Msa0456500:CDS |
| CCTGTATCTGACAGAGGCTT+GGG | 0.441771 | 3_3:-50099855 | None:intergenic |
| TGTTGTTCTTGGAGACTCTC+AGG | 0.448134 | 3_3:+50102837 | Msa0456500:CDS |
| CCCTGTATCTGACAGAGGCT+TGG | 0.449923 | 3_3:-50099856 | None:intergenic |
| ATACCTTTAGATGGTATTGA+AGG | 0.458241 | 3_3:-50103092 | None:intergenic |
| CTCATTCTTTGTTCTTGAAA+CGG | 0.458335 | 3_3:-50102242 | None:intergenic |
| AGCTCATTACATATGGAGAT+TGG | 0.461751 | 3_3:-50099715 | None:intergenic |
| GAGTCCATAGGCCACAATAC+TGG | 0.466074 | 3_3:+50101588 | Msa0456500:CDS |
| CAATATAAAATACCTTTAGA+TGG | 0.469682 | 3_3:-50103101 | None:intergenic |
| TTTGATAAGGATTGGTTGGA+TGG | 0.470107 | 3_3:+50103496 | Msa0456500:CDS |
| AGTTGATGATGTTATGGTCT+TGG | 0.470144 | 3_3:-50102428 | None:intergenic |
| GGCGGCGGTGTCCAGACGGT+GGG | 0.471063 | 3_3:+50096796 | Msa0456500:CDS |
| AGATCAAGACTCTCTTCTAC+TGG | 0.471363 | 3_3:+50103059 | Msa0456500:CDS |
| AATGGTGAGGAGCTCTGTAC+TGG | 0.472926 | 3_3:-50102809 | None:intergenic |
| AGAAGAAATATTTGAAAGTG+AGG | 0.475332 | 3_3:+50099780 | Msa0456500:CDS |
| TATTTCCCAGAGAAGGTTTG+AGG | 0.476699 | 3_3:-50102046 | None:intergenic |
| AGTAGAAGAGAGTCTTGATC+TGG | 0.479527 | 3_3:-50103057 | None:intergenic |
| TTTCAAATTCCTTGTCCTCA+AGG | 0.481515 | 3_3:+50099629 | Msa0456500:CDS |
| ATGTTTCTCGTGTTCGGCGG+CGG | 0.494893 | 3_3:+50096701 | Msa0456500:CDS |
| ACAAACAACAGAGGAGGCAG+AGG | 0.496642 | 3_3:+50101775 | Msa0456500:CDS |
| TTCCAAGCAACGAGTTACTA+AGG | 0.510470 | 3_3:+50103585 | Msa0456500:CDS |
| TAATGAGCTTCCTCAACTAA+AGG | 0.512785 | 3_3:+50099729 | Msa0456500:CDS |
| AGAGTTAATAAGTTCATCAT+CGG | 0.513574 | 3_3:+50102456 | Msa0456500:CDS |
| ATTACATTATTTCCCAGAGA+AGG | 0.515526 | 3_3:-50102053 | None:intergenic |
| TAAAGTGTCCTTTAAAAGAA+CGG | 0.529189 | 3_3:-50103332 | None:intergenic |
| ATTTCCCAGAGAAGGTTTGA+GGG | 0.529885 | 3_3:-50102045 | None:intergenic |
| ATGCTATACAATTAGTTGGA+GGG | 0.532362 | 3_3:+50102181 | Msa0456500:intron |
| CTTCCTTCAATACCATCTAA+AGG | 0.536962 | 3_3:+50103089 | Msa0456500:CDS |
| GAAAGTAGGCTCAAATATTG+AGG | 0.537310 | 3_3:+50103001 | Msa0456500:CDS |
| CGGTGGGGCTGGATCGGTGA+CGG | 0.539071 | 3_3:+50096812 | Msa0456500:CDS |
| TTTCTCGTGTTCGGCGGCGG+CGG | 0.540719 | 3_3:+50096704 | Msa0456500:CDS |
| TAATTTAATTATAGCCAAGA+GGG | 0.540789 | 3_3:-50103753 | None:intergenic |
| GTGTTCGTGTTCGACGGCGG+CGG | 0.543044 | 3_3:+50096781 | Msa0456500:CDS |
| GGTGGAGCTGTGTGCGTGGG+CGG | 0.545683 | 3_3:+50096739 | Msa0456500:CDS |
| GCAGCTTTAAGTGCCCCTCT+TGG | 0.545989 | 3_3:+50103739 | Msa0456500:CDS |
| TATTGAGGAACAATTTCCTA+AGG | 0.547849 | 3_3:+50103016 | Msa0456500:CDS |
| TTCTTCTTTACTTGTCACAA+GGG | 0.549364 | 3_3:+50103228 | Msa0456500:CDS |
| CGGCGGCGGTGTCCAGACGG+TGG | 0.550197 | 3_3:+50096795 | Msa0456500:CDS |
| AAAACATCTTCAATGGTGTA+GGG | 0.558389 | 3_3:-50099952 | None:intergenic |
| TGTTCAGTTTCTCTACATGA+TGG | 0.558965 | 3_3:+50102969 | Msa0456500:intron |
| ACACGAGTTGACTTCGTCAC+AGG | 0.560476 | 3_3:+50101650 | Msa0456500:CDS |
| CCAACACACTATGGGTTTGG+AGG | 0.561288 | 3_3:-50103411 | None:intergenic |
| ATCAAGATAAGTGTTGAAGA+AGG | 0.562114 | 3_3:+50102388 | Msa0456500:CDS |
| TTATGCTCAGAATTAACTAA+CGG | 0.565204 | 3_3:-50102481 | None:intergenic |
| TTTCTTCAAGCGGACACTGT+TGG | 0.565458 | 3_3:-50102013 | None:intergenic |
| ATGTGTAGAAATATGGTGAT+GGG | 0.568100 | 3_3:+50102764 | Msa0456500:intron |
| GAAGCATGTCCTTGAGGACA+AGG | 0.568791 | 3_3:-50099638 | None:intergenic |
| TTTGATGAATAAACAATCGA+TGG | 0.571395 | 3_3:+50101971 | Msa0456500:CDS |
| ATGATCAGAGCCTTTAGTTG+AGG | 0.573408 | 3_3:-50099739 | None:intergenic |
| GGAGAGTATCATTCAACAAG+AGG | 0.573832 | 3_3:+50103696 | Msa0456500:CDS |
| CTAACTCAACAAATTCAGAA+TGG | 0.574252 | 3_3:-50103450 | None:intergenic |
| TAACACGTCCAACACACTAT+GGG | 0.574748 | 3_3:-50103419 | None:intergenic |
| GTATCTGACAGAGGCTTGGG+AGG | 0.575248 | 3_3:-50099852 | None:intergenic |
| GAAGAAATATTTGAAAGTGA+GGG | 0.575629 | 3_3:+50099781 | Msa0456500:CDS |
| GAGGTGGTGTTCGTGTTCGA+CGG | 0.577674 | 3_3:+50096775 | Msa0456500:CDS |
| CGGCGGCGGTACGCAGAGAA+CGG | 0.578526 | 3_3:+50096718 | Msa0456500:CDS |
| CCAAGCCTCTGTCAGATACA+GGG | 0.579397 | 3_3:+50099856 | Msa0456500:CDS |
| GTACTGGAAATTGAATAAGA+AGG | 0.579961 | 3_3:-50102793 | None:intergenic |
| CGACGGCGGCGGTGTCCAGA+CGG | 0.581106 | 3_3:+50096792 | Msa0456500:CDS |
| GTGTCCTTTAAAAGAACGGT+AGG | 0.582573 | 3_3:-50103328 | None:intergenic |
| TATGTGTAGAAATATGGTGA+TGG | 0.582817 | 3_3:+50102763 | Msa0456500:intron |
| TGAGCATAAAACAACTTCAC+AGG | 0.582861 | 3_3:+50102495 | Msa0456500:CDS |
| GATGGTGCTTTCACGAAAGT+AGG | 0.586501 | 3_3:+50102987 | Msa0456500:CDS |
| GACGGTTGCTGTGAAGAAGA+AGG | 0.588988 | 3_3:+50096830 | Msa0456500:CDS |
| GATCATAAGAGAAGCAGATG+AGG | 0.589031 | 3_3:+50099756 | Msa0456500:CDS |
| TTGAAGCACATTATTGAAGA+CGG | 0.590029 | 3_3:+50099589 | Msa0456500:CDS |
| GAACAACATCTTTAATGGTG+AGG | 0.590865 | 3_3:-50102822 | None:intergenic |
| TTACTAAGTAATAGATACAA+AGG | 0.593895 | 3_3:+50103352 | Msa0456500:CDS |
| AACGGTGGAGCTGTGTGCGT+GGG | 0.595000 | 3_3:+50096736 | Msa0456500:CDS |
| ACTACCCTCAAACCTTCTCT+GGG | 0.599168 | 3_3:+50102041 | Msa0456500:CDS |
| GAACGGTGGAGCTGTGTGCG+TGG | 0.601858 | 3_3:+50096735 | Msa0456500:CDS |
| CTTTGGGAAGCATGTCCTTG+AGG | 0.603631 | 3_3:-50099644 | None:intergenic |
| GAACGGTAGGATGCTTAACA+AGG | 0.604566 | 3_3:-50103315 | None:intergenic |
| GTTCTTCTTTACTTGTCACA+AGG | 0.609081 | 3_3:+50103227 | Msa0456500:CDS |
| GTAGTATCAGTTTCTTCAAG+CGG | 0.611305 | 3_3:-50102023 | None:intergenic |
| ATTGGTTGGATGGTGTTGAA+AGG | 0.611641 | 3_3:+50103506 | Msa0456500:CDS |
| CGGCGGTACGCAGAGAACGG+TGG | 0.626401 | 3_3:+50096721 | Msa0456500:CDS |
| CAGATGTTTCTCGTGTTCGG+CGG | 0.629898 | 3_3:+50096698 | None:intergenic |
| GAATTCCCTGTATCTGACAG+AGG | 0.630225 | 3_3:-50099861 | None:intergenic |
| GCGGCGGTGTCCAGACGGTG+GGG | 0.633619 | 3_3:+50096797 | Msa0456500:CDS |
| CTAATTTAATTATAGCCAAG+AGG | 0.633662 | 3_3:-50103754 | None:intergenic |
| CCTCCAAACCCATAGTGTGT+TGG | 0.637617 | 3_3:+50103411 | Msa0456500:CDS |
| GTTGGGATTGAAGTTGACGC+AGG | 0.645679 | 3_3:+50101627 | Msa0456500:CDS |
| CAATTACGAAGAGAGTCCAT+AGG | 0.655379 | 3_3:+50101576 | Msa0456500:CDS |
| AATGAAACAAACAACAGAGG+AGG | 0.657953 | 3_3:+50101769 | Msa0456500:CDS |
| AATTTAATTATAGCCAAGAG+GGG | 0.661722 | 3_3:-50103752 | None:intergenic |
| ACCAAGACTAATAATGACCA+AGG | 0.661732 | 3_3:+50102865 | Msa0456500:CDS |
| CAAACAACAGAGGAGGCAGA+GGG | 0.665965 | 3_3:+50101776 | Msa0456500:CDS |
| GTGGTGTTCGTGTTCGACGG+CGG | 0.672530 | 3_3:+50096778 | Msa0456500:CDS |
| CGGCGCGAATAGAACAGAGG+TGG | 0.677788 | 3_3:+50096759 | Msa0456500:CDS |
| TGTGTAGAAATATGGTGATG+GGG | 0.680375 | 3_3:+50102765 | Msa0456500:intron |
| ATAGTGTGTACCTGATAATG+TGG | 0.683833 | 3_3:-50099989 | None:intergenic |
| ACAAATGAAACAAACAACAG+AGG | 0.684258 | 3_3:+50101766 | Msa0456500:CDS |
| GGGCGGCGCGAATAGAACAG+AGG | 0.725431 | 3_3:+50096756 | Msa0456500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATCATTAAGATTAATTA+TGG | + | chr3_3:50097044-50097063 | Msa0456500:intron | 10.0% |
| !!! | ATCTATTTTATAAAAACTTA+AGG | + | chr3_3:50098207-50098226 | Msa0456500:intron | 10.0% |
| !!! | TCTATTTTATAAAAACTTAA+GGG | + | chr3_3:50098208-50098227 | Msa0456500:intron | 10.0% |
| !! | GCAATAAAAAAAAATTAAAA+AGG | + | chr3_3:50099005-50099024 | Msa0456500:intron | 10.0% |
| !! | GTGATAAAAATTTAATTATT+AGG | + | chr3_3:50100428-50100447 | Msa0456500:intron | 10.0% |
| !!! | TCTATTTTATGAAAACTTAA+GGG | - | chr3_3:50097556-50097575 | None:intergenic | 15.0% |
| !!! | ATCTATTTTATGAAAACTTA+AGG | - | chr3_3:50097557-50097576 | None:intergenic | 15.0% |
| !! | TAATGAGTAAAATTGAAATT+TGG | + | chr3_3:50097863-50097882 | Msa0456500:intron | 15.0% |
| !! | AATGAGTAAAATTGAAATTT+GGG | + | chr3_3:50097864-50097883 | Msa0456500:intron | 15.0% |
| !!! | GGAATTAAATTTTCTTTTTT+TGG | + | chr3_3:50097943-50097962 | Msa0456500:intron | 15.0% |
| !!! | ATGTAGTTTTTAAAATTGTT+GGG | - | chr3_3:50100016-50100035 | None:intergenic | 15.0% |
| !!! | AATGTAGTTTTTAAAATTGT+TGG | - | chr3_3:50100017-50100036 | None:intergenic | 15.0% |
| !! | AATTAAAAGGATATTTAAGT+TGG | - | chr3_3:50102357-50102376 | None:intergenic | 15.0% |
| !! | TCTAAATTGTTAATATATGT+AGG | - | chr3_3:50102716-50102735 | None:intergenic | 15.0% |
| !!! | TTTTAATATGTGTAGAAATA+TGG | + | chr3_3:50102757-50102776 | Msa0456500:intron | 15.0% |
| !!! | GACAAGTTGAAATATATATT+TGG | + | chr3_3:50097104-50097123 | Msa0456500:intron | 20.0% |
| !! | GATATATTTCCAAAATCTTA+TGG | + | chr3_3:50097188-50097207 | Msa0456500:intron | 20.0% |
| !! | AAAAGATATTGCATTTGATA+GGG | - | chr3_3:50097286-50097305 | None:intergenic | 20.0% |
| !! | TGGAGTAATATATATTGTTA+TGG | + | chr3_3:50097308-50097327 | Msa0456500:intron | 20.0% |
| !! | GGAGTAATATATATTGTTAT+GGG | + | chr3_3:50097309-50097328 | Msa0456500:intron | 20.0% |
| !! | ATTGTTATGGGAAAAAATAT+AGG | + | chr3_3:50097321-50097340 | Msa0456500:intron | 20.0% |
| !! | TATCATAAATAAAGTAGCAA+AGG | - | chr3_3:50097453-50097472 | None:intergenic | 20.0% |
| !!! | TTTGCTACTTTATTTATGAT+AGG | + | chr3_3:50097452-50097471 | Msa0456500:intron | 20.0% |
| !!! | TTGCTACTTTATTTATGATA+GGG | + | chr3_3:50097453-50097472 | Msa0456500:intron | 20.0% |
| !!! | TGTCATTTTAATAAACTTCA+GGG | - | chr3_3:50097496-50097515 | None:intergenic | 20.0% |
| !!! | TGTAAGTTTTAAAAATAGAG+GGG | - | chr3_3:50097526-50097545 | None:intergenic | 20.0% |
| !!! | GTGTAAGTTTTAAAAATAGA+GGG | - | chr3_3:50097527-50097546 | None:intergenic | 20.0% |
| !!! | AGTGTAAGTTTTAAAAATAG+AGG | - | chr3_3:50097528-50097547 | None:intergenic | 20.0% |
| !! | ATGAGTAAAATTGAAATTTG+GGG | + | chr3_3:50097865-50097884 | Msa0456500:intron | 20.0% |
| !! | AGGATAAACATAAAGAAAAT+AGG | + | chr3_3:50097902-50097921 | Msa0456500:intron | 20.0% |
| !! | TAAACATAAAGAAAATAGGA+AGG | + | chr3_3:50097906-50097925 | Msa0456500:intron | 20.0% |
| !! | AAACATAAAGAAAATAGGAA+GGG | + | chr3_3:50097907-50097926 | Msa0456500:intron | 20.0% |
| !!! | AACTTGATGATAACTAATAA+TGG | + | chr3_3:50098039-50098058 | Msa0456500:intron | 20.0% |
| !! | ATGATAACTAATAATGGTTA+TGG | + | chr3_3:50098045-50098064 | Msa0456500:intron | 20.0% |
| !!! | ATTTTATAAAAACTTAAGGG+AGG | + | chr3_3:50098211-50098230 | Msa0456500:intron | 20.0% |
| !! | AGTGTAAGTTTAAAAAATAG+AGG | + | chr3_3:50098236-50098255 | Msa0456500:intron | 20.0% |
| !! | GTGTAAGTTTAAAAAATAGA+GGG | + | chr3_3:50098237-50098256 | Msa0456500:intron | 20.0% |
| !! | TGTAAGTTTAAAAAATAGAG+GGG | + | chr3_3:50098238-50098257 | Msa0456500:intron | 20.0% |
| !! | CAAATACAAAAGAAGTTAAA+CGG | - | chr3_3:50098367-50098386 | None:intergenic | 20.0% |
| !!! | TTTTTCAAGTAAAAGGTATA+TGG | - | chr3_3:50098955-50098974 | None:intergenic | 20.0% |
| !!! | AATGACATTTTTCAAGTAAA+AGG | - | chr3_3:50098962-50098981 | None:intergenic | 20.0% |
| !!! | TTTTTATCATCATTAGGTTT+TGG | - | chr3_3:50099474-50099493 | None:intergenic | 20.0% |
| !! | TTGCTTGATCTAATAATAAT+AGG | + | chr3_3:50099556-50099575 | Msa0456500:intron | 20.0% |
| !! | ATTGCTACAAATTTCAAATT+TGG | - | chr3_3:50099826-50099845 | None:intergenic | 20.0% |
| !! | AAAATCAAAAACATCTTCAA+TGG | - | chr3_3:50099962-50099981 | None:intergenic | 20.0% |
| !! | TTGTCTTAGGTAAAAAATAA+GGG | - | chr3_3:50100115-50100134 | None:intergenic | 20.0% |
| !! | AGTCAAATGTATATAATTCT+CGG | - | chr3_3:50100138-50100157 | None:intergenic | 20.0% |
| !! | ATATTAAAAGTGAACCTATT+TGG | + | chr3_3:50100162-50100181 | Msa0456500:intron | 20.0% |
| !!! | TTTTTATATCTCAACCAAAT+AGG | - | chr3_3:50100179-50100198 | None:intergenic | 20.0% |
| !!! | TTTTAATCAAACAATTCTCT+GGG | - | chr3_3:50100311-50100330 | None:intergenic | 20.0% |
| !! | GAAACTTCTATTAAATAGAT+AGG | - | chr3_3:50100388-50100407 | None:intergenic | 20.0% |
| !!! | CAAATTACTTTTGAATTTGT+TGG | - | chr3_3:50101854-50101873 | None:intergenic | 20.0% |
| !! | CAAATTCAAAAGTAATTTGA+AGG | + | chr3_3:50101855-50101874 | Msa0456500:intron | 20.0% |
| !! | TCATTGAATAGGTATATATT+GGG | - | chr3_3:50101909-50101928 | None:intergenic | 20.0% |
| !! | ATCATTGAATAGGTATATAT+TGG | - | chr3_3:50101910-50101929 | None:intergenic | 20.0% |
| !!! | ATATCCTTTTAATTTAAAGC+AGG | + | chr3_3:50102363-50102382 | Msa0456500:intron | 20.0% |
| !!! | TATCCTTTTAATTTAAAGCA+GGG | + | chr3_3:50102364-50102383 | Msa0456500:intron | 20.0% |
| !! | CAATATAAAATACCTTTAGA+TGG | - | chr3_3:50103104-50103123 | None:intergenic | 20.0% |
| !! | TTACTAAGTAATAGATACAA+AGG | + | chr3_3:50103352-50103371 | Msa0456500:CDS | 20.0% |
| !!! | AATTTTCTTTTGATAAGGAT+TGG | + | chr3_3:50103488-50103507 | Msa0456500:CDS | 20.0% |
| !!! | AAACATTTTTAATCAACATG+TGG | + | chr3_3:50103633-50103652 | Msa0456500:CDS | 20.0% |
| !!! | TTTTTTAGTTTAGAGAGAGA+AGG | + | chr3_3:50096902-50096921 | Msa0456500:intron | 25.0% |
| !!! | TTTTTAGTTTAGAGAGAGAA+GGG | + | chr3_3:50096903-50096922 | Msa0456500:intron | 25.0% |
| ! | GAATGTATATATACAAGTGT+AGG | + | chr3_3:50096986-50097005 | Msa0456500:intron | 25.0% |
| ! | TTATGTTACAGCATAATTAC+AGG | + | chr3_3:50097021-50097040 | Msa0456500:intron | 25.0% |
| !!! | TTGGAAGTATCTATAGAAAT+GGG | - | chr3_3:50097245-50097264 | None:intergenic | 25.0% |
| ! | GAAAAGATATTGCATTTGAT+AGG | - | chr3_3:50097287-50097306 | None:intergenic | 25.0% |
| !! | TCAAATGCAATATCTTTTCA+TGG | + | chr3_3:50097288-50097307 | Msa0456500:intron | 25.0% |
| !!! | GTCATTTTAATAAACTTCAG+GGG | - | chr3_3:50097495-50097514 | None:intergenic | 25.0% |
| !!! | GTGTCATTTTAATAAACTTC+AGG | - | chr3_3:50097497-50097516 | None:intergenic | 25.0% |
| !!! | GTAAGTTTTAAAAATAGAGG+GGG | - | chr3_3:50097525-50097544 | None:intergenic | 25.0% |
| !! | CAATATTAACAGAGTGTTAA+CGG | - | chr3_3:50097604-50097623 | None:intergenic | 25.0% |
| ! | TTATAATCATTGTTCTCTAG+AGG | + | chr3_3:50097645-50097664 | Msa0456500:intron | 25.0% |
| !! | TTCTTTATTTGATCCTTTAG+AGG | + | chr3_3:50097690-50097709 | Msa0456500:intron | 25.0% |
| ! | TAATGCGATATACACAATTA+AGG | + | chr3_3:50097804-50097823 | Msa0456500:intron | 25.0% |
| ! | TGAGTAAAATTGAAATTTGG+GGG | + | chr3_3:50097866-50097885 | Msa0456500:intron | 25.0% |
| ! | AGGAAGAAAAAATTGCAATT+CGG | + | chr3_3:50097987-50098006 | Msa0456500:intron | 25.0% |
| !!! | TTTTTTTTTCTTCAGTTCCA+TGG | - | chr3_3:50098143-50098162 | None:intergenic | 25.0% |
| ! | GTAAGTTTAAAAAATAGAGG+GGG | + | chr3_3:50098239-50098258 | Msa0456500:intron | 25.0% |
| ! | GGCTTTCATATTATCATAAA+GGG | - | chr3_3:50098311-50098330 | None:intergenic | 25.0% |
| ! | AGGCTTTCATATTATCATAA+AGG | - | chr3_3:50098312-50098331 | None:intergenic | 25.0% |
| ! | CCTATATAAAACTACAGAAA+AGG | - | chr3_3:50098332-50098351 | None:intergenic | 25.0% |
| !!! | CCTTTTCTGTAGTTTTATAT+AGG | + | chr3_3:50098329-50098348 | Msa0456500:intron | 25.0% |
| !!! | CGTTTAACTTCTTTTGTATT+TGG | + | chr3_3:50098365-50098384 | Msa0456500:intron | 25.0% |
| ! | AATGTTGTGTGATATTGTTT+GGG | - | chr3_3:50098808-50098827 | None:intergenic | 25.0% |
| ! | AAATGTTGTGTGATATTGTT+TGG | - | chr3_3:50098809-50098828 | None:intergenic | 25.0% |
| !! | GTAAAAGGTATATGGAAAAA+GGG | - | chr3_3:50098947-50098966 | None:intergenic | 25.0% |
| !! | AGTAAAAGGTATATGGAAAA+AGG | - | chr3_3:50098948-50098967 | None:intergenic | 25.0% |
| ! | TTAAATACTTGTGATCAAGT+AGG | - | chr3_3:50099174-50099193 | None:intergenic | 25.0% |
| ! | ATTTCTCATTCATTTATTGC+AGG | + | chr3_3:50099258-50099277 | Msa0456500:intron | 25.0% |
| !! | ATTTATTGCAGGATTTTTGT+GGG | + | chr3_3:50099269-50099288 | Msa0456500:intron | 25.0% |
| !!! | GCACTATTTTTATCATCATT+AGG | - | chr3_3:50099480-50099499 | None:intergenic | 25.0% |
| ! | AGAAGAAATATTTGAAAGTG+AGG | + | chr3_3:50099780-50099799 | Msa0456500:CDS | 25.0% |
| ! | GAAGAAATATTTGAAAGTGA+GGG | + | chr3_3:50099781-50099800 | Msa0456500:CDS | 25.0% |
| ! | GTACAGAATTGTCAAAAAAT+TGG | + | chr3_3:50099910-50099929 | Msa0456500:CDS | 25.0% |
| ! | AGAATTGTCAAAAAATTGGT+TGG | + | chr3_3:50099914-50099933 | Msa0456500:CDS | 25.0% |
| ! | GTTGTCTTAGGTAAAAAATA+AGG | - | chr3_3:50100116-50100135 | None:intergenic | 25.0% |
| ! | TTTAATCAAACAATTCTCTG+GGG | - | chr3_3:50100310-50100329 | None:intergenic | 25.0% |
| !! | CTTTTAATCAAACAATTCTC+TGG | - | chr3_3:50100312-50100331 | None:intergenic | 25.0% |
| ! | TGTTTGATTAAAAGAGAGAT+AGG | + | chr3_3:50100318-50100337 | Msa0456500:intron | 25.0% |
| ! | AGTTAAACATGTGAATGATA+TGG | + | chr3_3:50100458-50100477 | Msa0456500:intron | 25.0% |
| ! | GTTAAACATGTGAATGATAT+GGG | + | chr3_3:50100459-50100478 | Msa0456500:intron | 25.0% |
| ! | TTCTTACTAATCACACTATT+GGG | - | chr3_3:50100543-50100562 | None:intergenic | 25.0% |
| ! | ATTCTTACTAATCACACTAT+TGG | - | chr3_3:50100544-50100563 | None:intergenic | 25.0% |
| ! | ACATGTTCTTGTTACAAAAA+TGG | - | chr3_3:50100971-50100990 | None:intergenic | 25.0% |
| ! | CATATATAAGAGGTAAACTA+TGG | - | chr3_3:50101147-50101166 | None:intergenic | 25.0% |
| ! | ATGAACTTGTCATATATAAG+AGG | - | chr3_3:50101157-50101176 | None:intergenic | 25.0% |
| !!! | AGATATAGGAATGTTTTGTT+GGG | - | chr3_3:50101445-50101464 | None:intergenic | 25.0% |
| !! | AAGATATAGGAATGTTTTGT+TGG | - | chr3_3:50101446-50101465 | None:intergenic | 25.0% |
| !!! | ATTTTGCTATAGATAATGAG+AGG | + | chr3_3:50101526-50101545 | Msa0456500:intron | 25.0% |
| !!! | TTTTTTTAGTACCAGTATTG+TGG | - | chr3_3:50101602-50101621 | None:intergenic | 25.0% |
| ! | GTACTAAAAAAATTGCAGTT+GGG | + | chr3_3:50101610-50101629 | Msa0456500:CDS | 25.0% |
| ! | ATATTGAAGGGAATATAATG+CGG | - | chr3_3:50101881-50101900 | None:intergenic | 25.0% |
| ! | CATTGAATAGGTATATATTG+GGG | - | chr3_3:50101908-50101927 | None:intergenic | 25.0% |
| ! | TATACCTATTCAATGATCTA+AGG | + | chr3_3:50101913-50101932 | Msa0456500:intron | 25.0% |
| ! | TTTGATGAATAAACAATCGA+TGG | + | chr3_3:50101971-50101990 | Msa0456500:CDS | 25.0% |
| ! | TATAGCATGGAAATGTAAAT+AGG | - | chr3_3:50102169-50102188 | None:intergenic | 25.0% |
| ! | TTAGAAGTAACTACTTGTAT+TGG | - | chr3_3:50102271-50102290 | None:intergenic | 25.0% |
| !! | AGTAGTTACTTCTAAAAAAG+AGG | + | chr3_3:50102276-50102295 | Msa0456500:CDS | 25.0% |
| ! | AAGAATGCAATGAAAATGAA+GGG | - | chr3_3:50102307-50102326 | None:intergenic | 25.0% |
| ! | AAAGAATGCAATGAAAATGA+AGG | - | chr3_3:50102308-50102327 | None:intergenic | 25.0% |
| !! | ATACCCTGCTTTAAATTAAA+AGG | - | chr3_3:50102370-50102389 | None:intergenic | 25.0% |
| !!! | TAAATGAGTTGATGATGTTA+TGG | - | chr3_3:50102437-50102456 | None:intergenic | 25.0% |
| ! | AGAGTTAATAAGTTCATCAT+CGG | + | chr3_3:50102456-50102475 | Msa0456500:CDS | 25.0% |
| ! | TTATGCTCAGAATTAACTAA+CGG | - | chr3_3:50102484-50102503 | None:intergenic | 25.0% |
| !!! | AAACAAATTAGTTTTAACCC+TGG | - | chr3_3:50102613-50102632 | None:intergenic | 25.0% |
| !!! | ATTGTTTCTATAGTGAAATC+AGG | + | chr3_3:50102646-50102665 | Msa0456500:intron | 25.0% |
| ! | ACTAATATTTCATCATCCTT+AGG | - | chr3_3:50103035-50103054 | None:intergenic | 25.0% |
| !! | ATTCTTTCCTATACATTTTC+AGG | + | chr3_3:50103175-50103194 | Msa0456500:intron | 25.0% |
| !! | TTCTTTCCTATACATTTTCA+GGG | + | chr3_3:50103176-50103195 | Msa0456500:intron | 25.0% |
| !! | TAAAGTGTCCTTTAAAAGAA+CGG | - | chr3_3:50103335-50103354 | None:intergenic | 25.0% |
| ATATATATTTGGCCAAGATG+TGG | + | chr3_3:50097115-50097134 | Msa0456500:intron | 30.0% | |
| ATCAAGTTCCATTTGTTTGA+GGG | - | chr3_3:50097150-50097169 | None:intergenic | 30.0% | |
| GGAAATATATCGATCAAACA+CGG | - | chr3_3:50097179-50097198 | None:intergenic | 30.0% | |
| !! | CTTGGAAGTATCTATAGAAA+TGG | - | chr3_3:50097246-50097265 | None:intergenic | 30.0% |
| TAACATAACATAAGGAGAGA+GGG | - | chr3_3:50097429-50097448 | None:intergenic | 30.0% | |
| ATAACATAACATAAGGAGAG+AGG | - | chr3_3:50097430-50097449 | None:intergenic | 30.0% | |
| GCAAAGGATAACATAACATA+AGG | - | chr3_3:50097437-50097456 | None:intergenic | 30.0% | |
| !! | ATTTTAATAAACTTCAGGGG+AGG | - | chr3_3:50097492-50097511 | None:intergenic | 30.0% |
| CGTTAACACTCTGTTAATAT+TGG | + | chr3_3:50097602-50097621 | Msa0456500:intron | 30.0% | |
| ATTGATGCTCATGCAAAATT+AGG | - | chr3_3:50097726-50097745 | None:intergenic | 30.0% | |
| !! | TTTTTGGTGAACGATGAAAT+TGG | + | chr3_3:50097959-50097978 | Msa0456500:intron | 30.0% |
| GAACGATGAAATTGGAATTA+AGG | + | chr3_3:50097967-50097986 | Msa0456500:intron | 30.0% | |
| GGAAGAAAAAATTGCAATTC+GGG | + | chr3_3:50097988-50098007 | Msa0456500:intron | 30.0% | |
| ATTAACAGTGTTAAGAGAGA+AGG | + | chr3_3:50098175-50098194 | Msa0456500:intron | 30.0% | |
| TTAACAGTGTTAAGAGAGAA+GGG | + | chr3_3:50098176-50098195 | Msa0456500:intron | 30.0% | |
| !!! | TGTCATTTTAATAGACCTCA+AGG | + | chr3_3:50098268-50098287 | Msa0456500:intron | 30.0% |
| !! | GTCATTTTAATAGACCTCAA+GGG | + | chr3_3:50098269-50098288 | Msa0456500:intron | 30.0% |
| ATGTCAAGGCAATATGAATT+TGG | - | chr3_3:50098406-50098425 | None:intergenic | 30.0% | |
| ATTCATATTGCCTTGACATA+TGG | + | chr3_3:50098407-50098426 | Msa0456500:intron | 30.0% | |
| TTCATATTGCCTTGACATAT+GGG | + | chr3_3:50098408-50098427 | Msa0456500:intron | 30.0% | |
| ACATTCTTGGAGAAATAGAT+AGG | - | chr3_3:50098528-50098547 | None:intergenic | 30.0% | |
| TATTTCTCCAAGAATGTTGT+TGG | + | chr3_3:50098531-50098550 | Msa0456500:intron | 30.0% | |
| AAAGTTTCCAACAACATTCT+TGG | - | chr3_3:50098541-50098560 | None:intergenic | 30.0% | |
| AAGCACATTATAATAGACAC+TGG | + | chr3_3:50098586-50098605 | Msa0456500:intron | 30.0% | |
| ATGTCTTCCCAAAATTGAAA+TGG | + | chr3_3:50098638-50098657 | Msa0456500:intron | 30.0% | |
| TGTCTTCCCAAAATTGAAAT+GGG | + | chr3_3:50098639-50098658 | Msa0456500:intron | 30.0% | |
| GAAAACATATTTGGACACTA+TGG | + | chr3_3:50098688-50098707 | Msa0456500:intron | 30.0% | |
| AGTACAAGTTCTTTCAAAGA+TGG | - | chr3_3:50098832-50098851 | None:intergenic | 30.0% | |
| ! | ATCTTTGAAAGAACTTGTAC+TGG | + | chr3_3:50098831-50098850 | Msa0456500:intron | 30.0% |
| AATAGATTTAACAGCAACCT+GGG | - | chr3_3:50098866-50098885 | None:intergenic | 30.0% | |
| GCTTATCAAATATCAAGAGT+GGG | + | chr3_3:50099027-50099046 | Msa0456500:intron | 30.0% | |
| ! | CATTTATTGCAGGATTTTTG+TGG | + | chr3_3:50099268-50099287 | Msa0456500:intron | 30.0% |
| ACAAAAGATACTTTGGACTT+TGG | - | chr3_3:50099341-50099360 | None:intergenic | 30.0% | |
| CATTGAGACAAAAGATACTT+TGG | - | chr3_3:50099348-50099367 | None:intergenic | 30.0% | |
| ATAAAAAGATGCGTCATCAT+AGG | - | chr3_3:50099427-50099446 | None:intergenic | 30.0% | |
| !! | ATGATGACGCATCTTTTTAT+CGG | + | chr3_3:50099427-50099446 | Msa0456500:intron | 30.0% |
| !!! | TATCATCATTAGGTTTTGGA+GGG | - | chr3_3:50099470-50099489 | None:intergenic | 30.0% |
| !! | TTATCATCATTAGGTTTTGG+AGG | - | chr3_3:50099471-50099490 | None:intergenic | 30.0% |
| ATTATTAGATCAAGCAACTG+TGG | - | chr3_3:50099553-50099572 | None:intergenic | 30.0% | |
| TTGAAGCACATTATTGAAGA+CGG | + | chr3_3:50099589-50099608 | Msa0456500:CDS | 30.0% | |
| AAAACATCTTCAATGGTGTA+GGG | - | chr3_3:50099955-50099974 | None:intergenic | 30.0% | |
| AAAAACATCTTCAATGGTGT+AGG | - | chr3_3:50099956-50099975 | None:intergenic | 30.0% | |
| !! | TTTGATTTGACCACATTATC+AGG | + | chr3_3:50099979-50099998 | Msa0456500:CDS | 30.0% |
| ATATAATTCTCGGTTGTCTT+AGG | - | chr3_3:50100128-50100147 | None:intergenic | 30.0% | |
| !! | TCTAAAGTAGAAGCATTTCA+AGG | + | chr3_3:50100208-50100227 | Msa0456500:intron | 30.0% |
| CTATTAAATAGATAGGTCAC+TGG | - | chr3_3:50100381-50100400 | None:intergenic | 30.0% | |
| CCAATTTCATTCACAATCTT+GGG | - | chr3_3:50100503-50100522 | None:intergenic | 30.0% | |
| !!! | GAGAGTGAACATTTTTTGTT+GGG | - | chr3_3:50100578-50100597 | None:intergenic | 30.0% |
| !!! | TGAGAGTGAACATTTTTTGT+TGG | - | chr3_3:50100579-50100598 | None:intergenic | 30.0% |
| !!! | GCTTTTTTGGAATTTTGGTT+GGG | + | chr3_3:50100899-50100918 | Msa0456500:intron | 30.0% |
| ATTGTTGTGTTACACTTGAT+GGG | - | chr3_3:50101198-50101217 | None:intergenic | 30.0% | |
| TATTGTTGTGTTACACTTGA+TGG | - | chr3_3:50101199-50101218 | None:intergenic | 30.0% | |
| GTGAGAGAAAAAATATAGAG+AGG | + | chr3_3:50101239-50101258 | Msa0456500:intron | 30.0% | |
| AAATACAGGTGAAATATCAC+GGG | - | chr3_3:50101360-50101379 | None:intergenic | 30.0% | |
| CAAATACAGGTGAAATATCA+CGG | - | chr3_3:50101361-50101380 | None:intergenic | 30.0% | |
| ATAAGAGACGATAAAAACGA+GGG | - | chr3_3:50101390-50101409 | None:intergenic | 30.0% | |
| AATAAGAGACGATAAAAACG+AGG | - | chr3_3:50101391-50101410 | None:intergenic | 30.0% | |
| ATAACCACGTGAAAAGATAT+AGG | - | chr3_3:50101459-50101478 | None:intergenic | 30.0% | |
| GGTACTAAAAAAATTGCAGT+TGG | + | chr3_3:50101609-50101628 | Msa0456500:CDS | 30.0% | |
| ATGGTAATTGTATTCATGTG+TGG | - | chr3_3:50101704-50101723 | None:intergenic | 30.0% | |
| ! | TTGATTTGAAGACATTGTCA+TGG | - | chr3_3:50101723-50101742 | None:intergenic | 30.0% |
| ACAAATGAAACAAACAACAG+AGG | + | chr3_3:50101766-50101785 | Msa0456500:CDS | 30.0% | |
| GTTGGCAATAATACTATTGA+TGG | - | chr3_3:50101836-50101855 | None:intergenic | 30.0% | |
| AACAGATGCATTAGTTACTA+TGG | - | chr3_3:50101939-50101958 | None:intergenic | 30.0% | |
| AATGCATCTGTTCTTATCAT+AGG | + | chr3_3:50101947-50101966 | Msa0456500:intron | 30.0% | |
| ATTACATTATTTCCCAGAGA+AGG | - | chr3_3:50102056-50102075 | None:intergenic | 30.0% | |
| TTCCATGCTATACAATTAGT+TGG | + | chr3_3:50102177-50102196 | Msa0456500:intron | 30.0% | |
| ATGCTATACAATTAGTTGGA+GGG | + | chr3_3:50102181-50102200 | Msa0456500:intron | 30.0% | |
| CTCATTCTTTGTTCTTGAAA+CGG | - | chr3_3:50102245-50102264 | None:intergenic | 30.0% | |
| !! | ATCAAGATAAGTGTTGAAGA+AGG | + | chr3_3:50102388-50102407 | Msa0456500:CDS | 30.0% |
| ! | TCTATTGATTAATTGCCATG+AGG | + | chr3_3:50102522-50102541 | Msa0456500:intron | 30.0% |
| ! | TTGTTAGTAATTTTACGTCC+AGG | + | chr3_3:50102592-50102611 | Msa0456500:intron | 30.0% |
| ! | TGTTAGTAATTTTACGTCCA+GGG | + | chr3_3:50102593-50102612 | Msa0456500:intron | 30.0% |
| TATGTGTAGAAATATGGTGA+TGG | + | chr3_3:50102763-50102782 | Msa0456500:intron | 30.0% | |
| ATGTGTAGAAATATGGTGAT+GGG | + | chr3_3:50102764-50102783 | Msa0456500:intron | 30.0% | |
| GTACTGGAAATTGAATAAGA+AGG | - | chr3_3:50102796-50102815 | None:intergenic | 30.0% | |
| ACCATTAAAGATGTTGTTCT+TGG | + | chr3_3:50102826-50102845 | Msa0456500:CDS | 30.0% | |
| TCCAAGAACAACATCTTTAA+TGG | - | chr3_3:50102830-50102849 | None:intergenic | 30.0% | |
| AAGGGAGTTCAAAATCAAAA+GGG | - | chr3_3:50102936-50102955 | None:intergenic | 30.0% | |
| TATTGAGGAACAATTTCCTA+AGG | + | chr3_3:50103016-50103035 | Msa0456500:CDS | 30.0% | |
| ! | ATACCTTTAGATGGTATTGA+AGG | - | chr3_3:50103095-50103114 | None:intergenic | 30.0% |
| ! | ATTATGCTTCTTTGAGAACA+AGG | - | chr3_3:50103154-50103173 | None:intergenic | 30.0% |
| TTCTTCTTTACTTGTCACAA+GGG | + | chr3_3:50103228-50103247 | Msa0456500:CDS | 30.0% | |
| ! | CTCATAATCCAAATGCTTTT+TGG | - | chr3_3:50103272-50103291 | None:intergenic | 30.0% |
| CTAACTCAACAAATTCAGAA+TGG | - | chr3_3:50103453-50103472 | None:intergenic | 30.0% | |
| ! | GCGCAAATTTTCTTTTGATA+AGG | + | chr3_3:50103483-50103502 | Msa0456500:CDS | 30.0% |
| !! | TTCTTTTGATAAGGATTGGT+TGG | + | chr3_3:50103492-50103511 | Msa0456500:CDS | 30.0% |
| TCTTGAGAGAATTGCAAATT+AGG | - | chr3_3:50103544-50103563 | None:intergenic | 30.0% | |
| GTTGATACCATGTAAGAGAA+TGG | + | chr3_3:50096936-50096955 | Msa0456500:intron | 35.0% | |
| AAGCATTCCATTCTCTTACA+TGG | - | chr3_3:50096946-50096965 | None:intergenic | 35.0% | |
| CATCAAGTTCCATTTGTTTG+AGG | - | chr3_3:50097151-50097170 | None:intergenic | 35.0% | |
| CTCAAACAAATGGAACTTGA+TGG | + | chr3_3:50097149-50097168 | Msa0456500:intron | 35.0% | |
| TCCAAAATCTTATGGAACCA+TGG | + | chr3_3:50097196-50097215 | Msa0456500:intron | 35.0% | |
| GTATCTATAGAAATGGGAGA+TGG | - | chr3_3:50097239-50097258 | None:intergenic | 35.0% | |
| AGGTTCAAATCAATGAGTAC+TGG | + | chr3_3:50097341-50097360 | Msa0456500:intron | 35.0% | |
| TGGATGTACTAAAACCTCAT+TGG | + | chr3_3:50097361-50097380 | Msa0456500:intron | 35.0% | |
| AACATAACATAAGGAGAGAG+GGG | - | chr3_3:50097428-50097447 | None:intergenic | 35.0% | |
| ! | TTAACGGTGTTAAGAGAGAA+GGG | - | chr3_3:50097588-50097607 | None:intergenic | 35.0% |
| CAACAAGAGGTTTGAATTAG+AGG | - | chr3_3:50097760-50097779 | None:intergenic | 35.0% | |
| !! | GTTGTTCTTCTGAAGCATTA+CGG | + | chr3_3:50097776-50097795 | Msa0456500:intron | 35.0% |
| AGAAAAAATTGCAATTCGGG+AGG | + | chr3_3:50097991-50098010 | Msa0456500:intron | 35.0% | |
| ACATATTGTCCATATGCAGA+TGG | + | chr3_3:50098072-50098091 | Msa0456500:intron | 35.0% | |
| !!! | TAGTTTTGACCATCTGCATA+TGG | - | chr3_3:50098084-50098103 | None:intergenic | 35.0% |
| !! | ATTTTAATAGACCTCAAGGG+AGG | + | chr3_3:50098272-50098291 | Msa0456500:intron | 35.0% |
| TTGTATTTGGATCACATCAC+AGG | + | chr3_3:50098378-50098397 | Msa0456500:intron | 35.0% | |
| GTGCAACTGGAAAACATATT+TGG | + | chr3_3:50098679-50098698 | Msa0456500:intron | 35.0% | |
| TTGAATCTGCCAAGATTAGT+CGG | + | chr3_3:50098775-50098794 | Msa0456500:intron | 35.0% | |
| CAATAGATTTAACAGCAACC+TGG | - | chr3_3:50098867-50098886 | None:intergenic | 35.0% | |
| ! | CAGGTTGCTGTTAAATCTAT+TGG | + | chr3_3:50098865-50098884 | Msa0456500:intron | 35.0% |
| ACAGTAACAAAATCCGTGAA+CGG | + | chr3_3:50098904-50098923 | Msa0456500:intron | 35.0% | |
| ! | GATTGCAATTGATAGCTACT+CGG | + | chr3_3:50098983-50099002 | Msa0456500:intron | 35.0% |
| GGCTTATCAAATATCAAGAG+TGG | + | chr3_3:50099026-50099045 | Msa0456500:intron | 35.0% | |
| AATATCAAGAGTGGGAAACA+AGG | + | chr3_3:50099035-50099054 | Msa0456500:intron | 35.0% | |
| TGAAGTAAATGAACAGCAGA+TGG | + | chr3_3:50099366-50099385 | Msa0456500:intron | 35.0% | |
| ACTTAGGGTTGCAAAACATT+TGG | + | chr3_3:50099389-50099408 | Msa0456500:intron | 35.0% | |
| TGCAAAACATTTGGCTGTAT+AGG | + | chr3_3:50099398-50099417 | Msa0456500:intron | 35.0% | |
| ! | TGGAGGGCAAAAGAATTTTT+GGG | - | chr3_3:50099454-50099473 | None:intergenic | 35.0% |
| ! | TTGGAGGGCAAAAGAATTTT+TGG | - | chr3_3:50099455-50099474 | None:intergenic | 35.0% |
| TTTCAAATTCCTTGTCCTCA+AGG | + | chr3_3:50099629-50099648 | Msa0456500:CDS | 35.0% | |
| CAATAAGTGCTTCAAGCTTT+GGG | - | chr3_3:50099663-50099682 | None:intergenic | 35.0% | |
| ACAATAAGTGCTTCAAGCTT+TGG | - | chr3_3:50099664-50099683 | None:intergenic | 35.0% | |
| AGCTCATTACATATGGAGAT+TGG | - | chr3_3:50099718-50099737 | None:intergenic | 35.0% | |
| TTGAGGAAGCTCATTACATA+TGG | - | chr3_3:50099725-50099744 | None:intergenic | 35.0% | |
| TAATGAGCTTCCTCAACTAA+AGG | + | chr3_3:50099729-50099748 | Msa0456500:CDS | 35.0% | |
| ! | ATAGTGTGTACCTGATAATG+TGG | - | chr3_3:50099992-50100011 | None:intergenic | 35.0% |
| !!! | ACTTAGGTGTCATTGACTTT+TGG | + | chr3_3:50100263-50100282 | Msa0456500:intron | 35.0% |
| CCCAAGATTGTGAATGAAAT+TGG | + | chr3_3:50100500-50100519 | Msa0456500:intron | 35.0% | |
| GCCAATTTCATTCACAATCT+TGG | - | chr3_3:50100504-50100523 | None:intergenic | 35.0% | |
| ATGTGTGAGTTAACTCATGT+AGG | + | chr3_3:50100875-50100894 | Msa0456500:intron | 35.0% | |
| TGTGTGAGTTAACTCATGTA+GGG | + | chr3_3:50100876-50100895 | Msa0456500:intron | 35.0% | |
| !!! | TAGGGGCTTTTTTGGAATTT+TGG | + | chr3_3:50100894-50100913 | Msa0456500:intron | 35.0% |
| !!! | GGCTTTTTTGGAATTTTGGT+TGG | + | chr3_3:50100898-50100917 | Msa0456500:intron | 35.0% |
| TTGTAACAAGAACATGTCCA+TGG | + | chr3_3:50100974-50100993 | Msa0456500:intron | 35.0% | |
| AAGACCTCTCTTCAAATACA+AGG | - | chr3_3:50101299-50101318 | None:intergenic | 35.0% | |
| AATACAGGTGAAATATCACG+GGG | - | chr3_3:50101359-50101378 | None:intergenic | 35.0% | |
| ! | CATTCCTATATCTTTTCACG+TGG | + | chr3_3:50101452-50101471 | Msa0456500:intron | 35.0% |
| AATGAAACAAACAACAGAGG+AGG | + | chr3_3:50101769-50101788 | Msa0456500:CDS | 35.0% | |
| TATTGGGGAGGAATATTGAA+GGG | - | chr3_3:50101893-50101912 | None:intergenic | 35.0% | |
| ATATTGGGGAGGAATATTGA+AGG | - | chr3_3:50101894-50101913 | None:intergenic | 35.0% | |
| TGAATAGGTATATATTGGGG+AGG | - | chr3_3:50101905-50101924 | None:intergenic | 35.0% | |
| ! | ATGGCCTTAGATCATTGAAT+AGG | - | chr3_3:50101920-50101939 | None:intergenic | 35.0% |
| GTAGTATCAGTTTCTTCAAG+CGG | - | chr3_3:50102026-50102045 | None:intergenic | 35.0% | |
| GCTTTATATGCACAAAGAGT+TGG | - | chr3_3:50102085-50102104 | None:intergenic | 35.0% | |
| CTCCAACTAATTGTATAGCA+TGG | - | chr3_3:50102182-50102201 | None:intergenic | 35.0% | |
| CATGCTATACAATTAGTTGG+AGG | + | chr3_3:50102180-50102199 | Msa0456500:intron | 35.0% | |
| !! | AGTTGATGATGTTATGGTCT+TGG | - | chr3_3:50102431-50102450 | None:intergenic | 35.0% |
| TGAGCATAAAACAACTTCAC+AGG | + | chr3_3:50102495-50102514 | Msa0456500:CDS | 35.0% | |
| TTGATTAATTGCCATGAGGT+TGG | + | chr3_3:50102526-50102545 | Msa0456500:intron | 35.0% | |
| TTCCTTTAAATCCAACCTCA+TGG | - | chr3_3:50102540-50102559 | None:intergenic | 35.0% | |
| GGTTGGATTTAAAGGAATCT+AGG | + | chr3_3:50102543-50102562 | Msa0456500:intron | 35.0% | |
| ! | TGTGTAGAAATATGGTGATG+GGG | + | chr3_3:50102765-50102784 | Msa0456500:intron | 35.0% |
| GAACAACATCTTTAATGGTG+AGG | - | chr3_3:50102825-50102844 | None:intergenic | 35.0% | |
| ACCAAGACTAATAATGACCA+AGG | + | chr3_3:50102865-50102884 | Msa0456500:CDS | 35.0% | |
| ! | ACCTTGGTCATTATTAGTCT+TGG | - | chr3_3:50102869-50102888 | None:intergenic | 35.0% |
| AATCCAAAAAGTCTTCACCT+TGG | - | chr3_3:50102885-50102904 | None:intergenic | 35.0% | |
| TCAAAATCAAAAGGGTGATG+AGG | - | chr3_3:50102928-50102947 | None:intergenic | 35.0% | |
| GAAGGGAGTTCAAAATCAAA+AGG | - | chr3_3:50102937-50102956 | None:intergenic | 35.0% | |
| TGTTCAGTTTCTCTACATGA+TGG | + | chr3_3:50102969-50102988 | Msa0456500:intron | 35.0% | |
| GAAAGTAGGCTCAAATATTG+AGG | + | chr3_3:50103001-50103020 | Msa0456500:CDS | 35.0% | |
| CTTCCTTCAATACCATCTAA+AGG | + | chr3_3:50103089-50103108 | Msa0456500:CDS | 35.0% | |
| AGTGTTCCCTGAAAATGTAT+AGG | - | chr3_3:50103185-50103204 | None:intergenic | 35.0% | |
| GTTCTTCTTTACTTGTCACA+AGG | + | chr3_3:50103227-50103246 | Msa0456500:CDS | 35.0% | |
| !! | ACTAGTCTCCAAAAAGCATT+TGG | + | chr3_3:50103261-50103280 | Msa0456500:CDS | 35.0% |
| !! | TTTGATAAGGATTGGTTGGA+TGG | + | chr3_3:50103496-50103515 | Msa0456500:CDS | 35.0% |
| !!! | GGCACAAGTTTTAGAAACTA+AGG | + | chr3_3:50103717-50103736 | Msa0456500:CDS | 35.0% |
| ACTTGGTTCCCTCAAACAAA+TGG | + | chr3_3:50097139-50097158 | Msa0456500:intron | 40.0% | |
| ! | GCCATGGTTCCATAAGATTT+TGG | - | chr3_3:50097200-50097219 | None:intergenic | 40.0% |
| AACCATGGCTTCGTCAATTA+AGG | + | chr3_3:50097211-50097230 | Msa0456500:intron | 40.0% | |
| ACCATGGCTTCGTCAATTAA+GGG | + | chr3_3:50097212-50097231 | Msa0456500:intron | 40.0% | |
| TTCCAAGCCACAAACACAAT+TGG | + | chr3_3:50097259-50097278 | Msa0456500:intron | 40.0% | |
| ATAGGGTCCAATTGTGTTTG+TGG | - | chr3_3:50097269-50097288 | None:intergenic | 40.0% | |
| ! | TAAAACCTCATTGGTGTCTG+AGG | + | chr3_3:50097370-50097389 | Msa0456500:intron | 40.0% |
| GCAGGATTTCTTAATCCCTT+CGG | + | chr3_3:50097400-50097419 | Msa0456500:intron | 40.0% | |
| ! | GTTAACGGTGTTAAGAGAGA+AGG | - | chr3_3:50097589-50097608 | None:intergenic | 40.0% |
| GCTCATGCAAAATTAGGAAG+TGG | - | chr3_3:50097720-50097739 | None:intergenic | 40.0% | |
| TGCTTCAGAAGAACAACAAG+AGG | - | chr3_3:50097773-50097792 | None:intergenic | 40.0% | |
| TTGGGGGAGTTATTAATACG+AGG | + | chr3_3:50097882-50097901 | Msa0456500:intron | 40.0% | |
| TTGCAATTCGGGAGGATAAT+TGG | + | chr3_3:50097999-50098018 | Msa0456500:intron | 40.0% | |
| ! | CGGAGACCCATTTCAATTTT+GGG | - | chr3_3:50098648-50098667 | None:intergenic | 40.0% |
| ! | ACGGAGACCCATTTCAATTT+TGG | - | chr3_3:50098649-50098668 | None:intergenic | 40.0% |
| TCACCTTTGTCTTCCAGTAT+TGG | + | chr3_3:50098738-50098757 | Msa0456500:intron | 40.0% | |
| CTTCCAATACTGGAAGACAA+AGG | - | chr3_3:50098744-50098763 | None:intergenic | 40.0% | |
| AGAGTGAGTTCTTCCAATAC+TGG | - | chr3_3:50098754-50098773 | None:intergenic | 40.0% | |
| TGGAAAAAGGGATACCTTCA+TGG | - | chr3_3:50098935-50098954 | None:intergenic | 40.0% | |
| TACTAGCACCCAATCTTAGT+TGG | + | chr3_3:50099082-50099101 | Msa0456500:intron | 40.0% | |
| CCATCATGCCAACTAAGATT+GGG | - | chr3_3:50099093-50099112 | None:intergenic | 40.0% | |
| ACCATCATGCCAACTAAGAT+TGG | - | chr3_3:50099094-50099113 | None:intergenic | 40.0% | |
| AGTAGGACTTTCTCGTATAG+AGG | - | chr3_3:50099157-50099176 | None:intergenic | 40.0% | |
| !!! | GCTCGTTTTGGAAAAACTCT+CGG | + | chr3_3:50099306-50099325 | Msa0456500:intron | 40.0% |
| ! | AATGAACAGCAGATGGACTT+AGG | + | chr3_3:50099373-50099392 | Msa0456500:intron | 40.0% |
| ! | ATGAACAGCAGATGGACTTA+GGG | + | chr3_3:50099374-50099393 | Msa0456500:intron | 40.0% |
| ATGATCAGAGCCTTTAGTTG+AGG | - | chr3_3:50099742-50099761 | None:intergenic | 40.0% | |
| GATCATAAGAGAAGCAGATG+AGG | + | chr3_3:50099756-50099775 | Msa0456500:CDS | 40.0% | |
| TTTCAAGGACGCATACCTTA+TGG | + | chr3_3:50100223-50100242 | Msa0456500:intron | 40.0% | |
| GTGAATGAAATTGGCCCAAA+TGG | + | chr3_3:50100509-50100528 | Msa0456500:intron | 40.0% | |
| ATTGGGCTTGGATACCATTT+GGG | - | chr3_3:50100526-50100545 | None:intergenic | 40.0% | |
| TATTGGGCTTGGATACCATT+TGG | - | chr3_3:50100527-50100546 | None:intergenic | 40.0% | |
| ACTAATCACACTATTGGGCT+TGG | - | chr3_3:50100538-50100557 | None:intergenic | 40.0% | |
| !!! | CAGGGGTATTTTGGAAAGTT+TGG | - | chr3_3:50100603-50100622 | None:intergenic | 40.0% |
| ATGTGTGAGTTAACTCAAGC+GGG | - | chr3_3:50100729-50100748 | None:intergenic | 40.0% | |
| CATGTGTGAGTTAACTCAAG+CGG | - | chr3_3:50100730-50100749 | None:intergenic | 40.0% | |
| GTGTGAGTTAACTCATGTAG+GGG | + | chr3_3:50100877-50100896 | Msa0456500:intron | 40.0% | |
| !!! | AACTCATGTAGGGGCTTTTT+TGG | + | chr3_3:50100886-50100905 | Msa0456500:intron | 40.0% |
| CAATTGTCTTACATGCACCA+TGG | - | chr3_3:50100994-50101013 | None:intergenic | 40.0% | |
| TTCTCATGCAAGTGACAAAG+TGG | + | chr3_3:50101017-50101036 | Msa0456500:intron | 40.0% | |
| ACTTGATGGGATGGTTGAAA+TGG | - | chr3_3:50101185-50101204 | None:intergenic | 40.0% | |
| TTGTGTTACACTTGATGGGA+TGG | - | chr3_3:50101194-50101213 | None:intergenic | 40.0% | |
| GGAGAGGCAATAAATCTTTC+AGG | - | chr3_3:50101278-50101297 | None:intergenic | 40.0% | |
| CTCTCTTCAAATACAAGGAG+AGG | - | chr3_3:50101294-50101313 | None:intergenic | 40.0% | |
| CTCTCCTTGTATTTGAAGAG+AGG | + | chr3_3:50101292-50101311 | Msa0456500:intron | 40.0% | |
| CAATTACGAAGAGAGTCCAT+AGG | + | chr3_3:50101576-50101595 | Msa0456500:CDS | 40.0% | |
| ATTTCCCAGAGAAGGTTTGA+GGG | - | chr3_3:50102048-50102067 | None:intergenic | 40.0% | |
| TATTTCCCAGAGAAGGTTTG+AGG | - | chr3_3:50102049-50102068 | None:intergenic | 40.0% | |
| TGCCATGAGGTTGGATTTAA+AGG | + | chr3_3:50102535-50102554 | Msa0456500:intron | 40.0% | |
| ! | TGACCAAGGTGAAGACTTTT+TGG | + | chr3_3:50102879-50102898 | Msa0456500:intron | 40.0% |
| GAACAACGTGTGGAAAAGAA+GGG | - | chr3_3:50102954-50102973 | None:intergenic | 40.0% | |
| TGAACAACGTGTGGAAAAGA+AGG | - | chr3_3:50102955-50102974 | None:intergenic | 40.0% | |
| TAGAGAAACTGAACAACGTG+TGG | - | chr3_3:50102964-50102983 | None:intergenic | 40.0% | |
| AGTAGAAGAGAGTCTTGATC+TGG | - | chr3_3:50103060-50103079 | None:intergenic | 40.0% | |
| AGATCAAGACTCTCTTCTAC+TGG | + | chr3_3:50103059-50103078 | Msa0456500:CDS | 40.0% | |
| ! | GCATCCTACCGTTCTTTTAA+AGG | + | chr3_3:50103324-50103343 | Msa0456500:CDS | 40.0% |
| ! | GTGTCCTTTAAAAGAACGGT+AGG | - | chr3_3:50103331-50103350 | None:intergenic | 40.0% |
| TAACACGTCCAACACACTAT+GGG | - | chr3_3:50103422-50103441 | None:intergenic | 40.0% | |
| ! | ATTGGTTGGATGGTGTTGAA+AGG | + | chr3_3:50103506-50103525 | Msa0456500:CDS | 40.0% |
| TTCCAAGCAACGAGTTACTA+AGG | + | chr3_3:50103585-50103604 | Msa0456500:CDS | 40.0% | |
| TTCCTTAGTAACTCGTTGCT+TGG | - | chr3_3:50103590-50103609 | None:intergenic | 40.0% | |
| !!! | GACATCCTCTAAAGCTGTTT+TGG | + | chr3_3:50103675-50103694 | Msa0456500:CDS | 40.0% |
| ! | ACTCTCCAAAACAGCTTTAG+AGG | - | chr3_3:50103683-50103702 | None:intergenic | 40.0% |
| !! | GGAGAGTATCATTCAACAAG+AGG | + | chr3_3:50103696-50103715 | Msa0456500:CDS | 40.0% |
| AGAGAGAGAAGGGATCGATT+AGG | + | chr3_3:50096913-50096932 | Msa0456500:intron | 45.0% | |
| GAGAGAGAAGGGATCGATTA+GGG | + | chr3_3:50096914-50096933 | Msa0456500:intron | 45.0% | |
| TTTGGCCAAGATGTGGAACT+TGG | + | chr3_3:50097122-50097141 | Msa0456500:intron | 45.0% | |
| CCATGGCTTCGTCAATTAAG+GGG | + | chr3_3:50097213-50097232 | Msa0456500:intron | 45.0% | |
| GTCCAATTGTGTTTGTGGCT+TGG | - | chr3_3:50097264-50097283 | None:intergenic | 45.0% | |
| AGGAAGTGGTATGCCTCTAA+AGG | - | chr3_3:50097706-50097725 | None:intergenic | 45.0% | |
| !! | AGGAAGGGTTTTGTCGTAGA+TGG | + | chr3_3:50097922-50097941 | Msa0456500:intron | 45.0% |
| TCTGTCTGATTGTGTGACCA+TGG | + | chr3_3:50098123-50098142 | Msa0456500:intron | 45.0% | |
| AATTACAGTCACCTCCCTTG+AGG | - | chr3_3:50098286-50098305 | None:intergenic | 45.0% | |
| ATAGACACTGGAGATGACAG+TGG | + | chr3_3:50098598-50098617 | Msa0456500:intron | 45.0% | |
| ATGACAGTGGAGGCAATAAC+TGG | + | chr3_3:50098611-50098630 | Msa0456500:intron | 45.0% | |
| TGACAGTGGAGGCAATAACT+GGG | + | chr3_3:50098612-50098631 | Msa0456500:intron | 45.0% | |
| ! | TGGTGATGATCATCCAAACC+AGG | + | chr3_3:50098708-50098727 | Msa0456500:intron | 45.0% |
| AGGTGAATCTCAACCTGGTT+TGG | - | chr3_3:50098724-50098743 | None:intergenic | 45.0% | |
| GACAAAGGTGAATCTCAACC+TGG | - | chr3_3:50098729-50098748 | None:intergenic | 45.0% | |
| GATTGGGTGCTAGTAGTAGT+GGG | - | chr3_3:50099077-50099096 | None:intergenic | 45.0% | |
| AGATTGGGTGCTAGTAGTAG+TGG | - | chr3_3:50099078-50099097 | None:intergenic | 45.0% | |
| CCCAATCTTAGTTGGCATGA+TGG | + | chr3_3:50099090-50099109 | Msa0456500:intron | 45.0% | |
| AGGACTTTCTCGTATAGAGG+TGG | - | chr3_3:50099154-50099173 | None:intergenic | 45.0% | |
| ! | GCAGGATTTTTGTGGGAATG+TGG | + | chr3_3:50099276-50099295 | Msa0456500:intron | 45.0% |
| !! | TGTGGAGCATTTGCTCGTTT+TGG | + | chr3_3:50099294-50099313 | Msa0456500:intron | 45.0% |
| TTAGATCAAGCAACTGTGGC+AGG | - | chr3_3:50099549-50099568 | None:intergenic | 45.0% | |
| GAATTCCCTGTATCTGACAG+AGG | - | chr3_3:50099864-50099883 | None:intergenic | 45.0% | |
| AAGGACGCATACCTTATGGA+GGG | + | chr3_3:50100227-50100246 | Msa0456500:intron | 45.0% | |
| ATACCTTATGGAGGGACCTA+CGG | + | chr3_3:50100235-50100254 | Msa0456500:intron | 45.0% | |
| GACACCTAAGTGAAATCCGT+AGG | - | chr3_3:50100254-50100273 | None:intergenic | 45.0% | |
| !! | GATAGGTCACTGGTGTCATT+TGG | - | chr3_3:50100371-50100390 | None:intergenic | 45.0% |
| !!! | TAACTCACGCAGGGGTATTT+TGG | - | chr3_3:50100612-50100631 | None:intergenic | 45.0% |
| AGCGTAAGTTAACTCACGCA+GGG | - | chr3_3:50100621-50100640 | None:intergenic | 45.0% | |
| TGCGTGAGTTAACTTACGCT+GGG | + | chr3_3:50100621-50100640 | Msa0456500:intron | 45.0% | |
| ACACCTGCTTGAGTTAACTC+AGG | - | chr3_3:50100658-50100677 | None:intergenic | 45.0% | |
| TGGGAATGAGCAAAACGTGT+TGG | + | chr3_3:50100918-50100937 | Msa0456500:intron | 45.0% | |
| GGGAATGAGCAAAACGTGTT+GGG | + | chr3_3:50100919-50100938 | Msa0456500:intron | 45.0% | |
| GGAGAAGAGCAGAATTCGAT+TGG | + | chr3_3:50100940-50100959 | Msa0456500:intron | 45.0% | |
| CAAGTGACATGTTGCACACA+TGG | + | chr3_3:50101080-50101099 | Msa0456500:intron | 45.0% | |
| ACGAGGGATTGAGCAAATAC+AGG | - | chr3_3:50101374-50101393 | None:intergenic | 45.0% | |
| AGTACCAGTATTGTGGCCTA+TGG | - | chr3_3:50101595-50101614 | None:intergenic | 45.0% | |
| TTTCTTCAAGCGGACACTGT+TGG | - | chr3_3:50102016-50102035 | None:intergenic | 45.0% | |
| TACTACCCTCAAACCTTCTC+TGG | + | chr3_3:50102040-50102059 | Msa0456500:CDS | 45.0% | |
| ACTACCCTCAAACCTTCTCT+GGG | + | chr3_3:50102041-50102060 | Msa0456500:CDS | 45.0% | |
| TGTTGTTCTTGGAGACTCTC+AGG | + | chr3_3:50102837-50102856 | Msa0456500:CDS | 45.0% | |
| GATGGTGCTTTCACGAAAGT+AGG | + | chr3_3:50102987-50103006 | Msa0456500:CDS | 45.0% | |
| GAACGGTAGGATGCTTAACA+AGG | - | chr3_3:50103318-50103337 | None:intergenic | 45.0% | |
| TAGCTCAGCTAGACAGTTGT+AGG | - | chr3_3:50103383-50103402 | None:intergenic | 45.0% | |
| CTAACACGTCCAACACACTA+TGG | - | chr3_3:50103423-50103442 | None:intergenic | 45.0% | |
| CATAGTGTGTTGGACGTGTT+AGG | + | chr3_3:50103421-50103440 | Msa0456500:CDS | 45.0% | |
| GACGGTTGCTGTGAAGAAGA+AGG | + | chr3_3:50096830-50096849 | Msa0456500:CDS | 50.0% | |
| GGGAACCAAGTTCCACATCT+TGG | - | chr3_3:50097130-50097149 | None:intergenic | 50.0% | |
| CCCCTTAATTGACGAAGCCA+TGG | - | chr3_3:50097216-50097235 | None:intergenic | 50.0% | |
| CTGATCCTCAGACACCAATG+AGG | - | chr3_3:50097378-50097397 | None:intergenic | 50.0% | |
| GAGCACGATCCCATATGTCA+AGG | - | chr3_3:50098420-50098439 | None:intergenic | 50.0% | |
| GACAGTGGAGGCAATAACTG+GGG | + | chr3_3:50098613-50098632 | Msa0456500:intron | 50.0% | |
| CAGTTGCACGCAGTCATCAA+CGG | - | chr3_3:50098668-50098687 | None:intergenic | 50.0% | |
| ! | GGACACATGCCGACTAATCT+TGG | - | chr3_3:50098787-50098806 | None:intergenic | 50.0% |
| GAAGCATGTCCTTGAGGACA+AGG | - | chr3_3:50099641-50099660 | None:intergenic | 50.0% | |
| ! | CTTTGGGAAGCATGTCCTTG+AGG | - | chr3_3:50099647-50099666 | None:intergenic | 50.0% |
| CCTGTATCTGACAGAGGCTT+GGG | - | chr3_3:50099858-50099877 | None:intergenic | 50.0% | |
| CCAAGCCTCTGTCAGATACA+GGG | + | chr3_3:50099856-50099875 | Msa0456500:CDS | 50.0% | |
| CAAGGACGCATACCTTATGG+AGG | + | chr3_3:50100226-50100245 | Msa0456500:intron | 50.0% | |
| AATCCGTAGGTCCCTCCATA+AGG | - | chr3_3:50100241-50100260 | None:intergenic | 50.0% | |
| GGGACCTACGGATTTCACTT+AGG | + | chr3_3:50100247-50100266 | Msa0456500:intron | 50.0% | |
| GCGTAAGTTAACTCACGCAG+GGG | - | chr3_3:50100620-50100639 | None:intergenic | 50.0% | |
| CAGCGTAAGTTAACTCACGC+AGG | - | chr3_3:50100622-50100641 | None:intergenic | 50.0% | |
| CTGCGTGAGTTAACTTACGC+TGG | + | chr3_3:50100620-50100639 | Msa0456500:intron | 50.0% | |
| CCTGCTTGAGTTAACTCAGG+CGG | - | chr3_3:50100655-50100674 | None:intergenic | 50.0% | |
| TGCACACATGGAGTTCTGCA+TGG | + | chr3_3:50101092-50101111 | Msa0456500:intron | 50.0% | |
| GAGTCCATAGGCCACAATAC+TGG | + | chr3_3:50101588-50101607 | Msa0456500:CDS | 50.0% | |
| GTTGGGATTGAAGTTGACGC+AGG | + | chr3_3:50101627-50101646 | Msa0456500:CDS | 50.0% | |
| ! | ACACGAGTTGACTTCGTCAC+AGG | + | chr3_3:50101650-50101669 | Msa0456500:CDS | 50.0% |
| ACAAACAACAGAGGAGGCAG+AGG | + | chr3_3:50101775-50101794 | Msa0456500:CDS | 50.0% | |
| CAAACAACAGAGGAGGCAGA+GGG | + | chr3_3:50101776-50101795 | Msa0456500:CDS | 50.0% | |
| AATGGTGAGGAGCTCTGTAC+TGG | - | chr3_3:50102812-50102831 | None:intergenic | 50.0% | |
| CCAACACACTATGGGTTTGG+AGG | - | chr3_3:50103414-50103433 | None:intergenic | 50.0% | |
| CCTCCAAACCCATAGTGTGT+TGG | + | chr3_3:50103411-50103430 | Msa0456500:CDS | 50.0% | |
| CGTCCAACACACTATGGGTT+TGG | - | chr3_3:50103417-50103436 | None:intergenic | 50.0% | |
| ATGTTTCTCGTGTTCGGCGG+CGG | + | chr3_3:50096701-50096720 | Msa0456500:CDS | 55.0% | |
| GAGGTGGTGTTCGTGTTCGA+CGG | + | chr3_3:50096775-50096794 | Msa0456500:CDS | 55.0% | |
| !! | AAGGAGAGAGGGGTACCGAA+GGG | - | chr3_3:50097418-50097437 | None:intergenic | 55.0% |
| !! | TAAGGAGAGAGGGGTACCGA+AGG | - | chr3_3:50097419-50097438 | None:intergenic | 55.0% |
| GACACTGGAGATGACAGTGG+AGG | + | chr3_3:50098601-50098620 | Msa0456500:intron | 55.0% | |
| !! | CGTTGATGACTGCGTGCAAC+TGG | + | chr3_3:50098666-50098685 | Msa0456500:intron | 55.0% |
| TGTACTGGATGAATGCGCCC+AGG | + | chr3_3:50098846-50098865 | Msa0456500:intron | 55.0% | |
| ! | CTTCATGGCTGTGCCGTTCA+CGG | - | chr3_3:50098920-50098939 | None:intergenic | 55.0% |
| ! | TGGGTGCTAGTAGTAGTGGG+AGG | - | chr3_3:50099074-50099093 | None:intergenic | 55.0% |
| GTATCTGACAGAGGCTTGGG+AGG | - | chr3_3:50099855-50099874 | None:intergenic | 55.0% | |
| CCCAAGCCTCTGTCAGATAC+AGG | + | chr3_3:50099855-50099874 | Msa0456500:CDS | 55.0% | |
| CCCTGTATCTGACAGAGGCT+TGG | - | chr3_3:50099859-50099878 | None:intergenic | 55.0% | |
| CCGCCTGAGTTAACTCAAGC+AGG | + | chr3_3:50100652-50100671 | Msa0456500:intron | 55.0% | |
| !! | GCAGCTTTAAGTGCCCCTCT+TGG | + | chr3_3:50103739-50103758 | Msa0456500:CDS | 55.0% |
| AACGGTGGAGCTGTGTGCGT+GGG | + | chr3_3:50096736-50096755 | Msa0456500:CDS | 60.0% | |
| CGGCGCGAATAGAACAGAGG+TGG | + | chr3_3:50096759-50096778 | Msa0456500:CDS | 60.0% | |
| GTGGTGTTCGTGTTCGACGG+CGG | + | chr3_3:50096778-50096797 | Msa0456500:CDS | 60.0% | |
| GGTGTCTGAGGATCAGCAGC+AGG | + | chr3_3:50097382-50097401 | Msa0456500:intron | 60.0% | |
| CGTGAACGGCACAGCCATGA+AGG | + | chr3_3:50098918-50098937 | Msa0456500:intron | 60.0% | |
| TTTCTCGTGTTCGGCGGCGG+CGG | + | chr3_3:50096704-50096723 | Msa0456500:CDS | 65.0% | |
| GAACGGTGGAGCTGTGTGCG+TGG | + | chr3_3:50096735-50096754 | Msa0456500:CDS | 65.0% | |
| GGGCGGCGCGAATAGAACAG+AGG | + | chr3_3:50096756-50096775 | Msa0456500:CDS | 65.0% | |
| GTGTTCGTGTTCGACGGCGG+CGG | + | chr3_3:50096781-50096800 | Msa0456500:CDS | 65.0% | |
| TCCAGACGGTGGGGCTGGAT+CGG | + | chr3_3:50096806-50096825 | Msa0456500:CDS | 65.0% | |
| CGGCGGCGGTACGCAGAGAA+CGG | + | chr3_3:50096718-50096737 | Msa0456500:CDS | 70.0% | |
| CGGCGGTACGCAGAGAACGG+TGG | + | chr3_3:50096721-50096740 | Msa0456500:CDS | 70.0% | |
| GGTGGAGCTGTGTGCGTGGG+CGG | + | chr3_3:50096739-50096758 | Msa0456500:CDS | 70.0% | |
| ACCGATCCAGCCCCACCGTC+TGG | - | chr3_3:50096810-50096829 | None:intergenic | 70.0% | |
| CGGTGGGGCTGGATCGGTGA+CGG | + | chr3_3:50096812-50096831 | Msa0456500:CDS | 70.0% | |
| CGACGGCGGCGGTGTCCAGA+CGG | + | chr3_3:50096792-50096811 | Msa0456500:CDS | 75.0% | |
| GGCGGCGGTGTCCAGACGGT+GGG | + | chr3_3:50096796-50096815 | Msa0456500:CDS | 75.0% | |
| GCGGCGGTGTCCAGACGGTG+GGG | + | chr3_3:50096797-50096816 | Msa0456500:CDS | 75.0% | |
| CGGTGTCCAGACGGTGGGGC+TGG | + | chr3_3:50096801-50096820 | Msa0456500:CDS | 75.0% | |
| ! | CGGCGGCGGTGTCCAGACGG+TGG | + | chr3_3:50096795-50096814 | Msa0456500:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 50096701 | 50103771 | 50096701 | ID=Msa0456500;Name=Msa0456500 |
| chr3_3 | mRNA | 50096701 | 50103771 | 50096701 | ID=Msa0456500-mRNA-1;Parent=Msa0456500;Name=Msa0456500-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.8|1|1|10|0|656 |
| chr3_3 | exon | 50096701 | 50096851 | 50096701 | ID=Msa0456500-mRNA-1:exon:9605;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50099578 | 50100000 | 50099578 | ID=Msa0456500-mRNA-1:exon:9606;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50101538 | 50101671 | 50101538 | ID=Msa0456500-mRNA-1:exon:9607;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50101764 | 50101865 | 50101764 | ID=Msa0456500-mRNA-1:exon:9608;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50101969 | 50102070 | 50101969 | ID=Msa0456500-mRNA-1:exon:9609;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50102196 | 50102297 | 50102196 | ID=Msa0456500-mRNA-1:exon:9610;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50102385 | 50102516 | 50102385 | ID=Msa0456500-mRNA-1:exon:9611;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50102772 | 50102886 | 50102772 | ID=Msa0456500-mRNA-1:exon:9612;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50102976 | 50103110 | 50102976 | ID=Msa0456500-mRNA-1:exon:9613;Parent=Msa0456500-mRNA-1 |
| chr3_3 | exon | 50103197 | 50103771 | 50103197 | ID=Msa0456500-mRNA-1:exon:9614;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50096701 | 50096851 | 50096701 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50099578 | 50100000 | 50099578 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50101538 | 50101671 | 50101538 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50101764 | 50101865 | 50101764 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50101969 | 50102070 | 50101969 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50102196 | 50102297 | 50102196 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50102385 | 50102516 | 50102385 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50102772 | 50102886 | 50102772 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50102976 | 50103110 | 50102976 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| chr3_3 | CDS | 50103197 | 50103771 | 50103197 | ID=Msa0456500-mRNA-1:cds;Parent=Msa0456500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
