AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001510 MtrunA17_Chr3g0145851 98.162 272 2 2 1 269 1 272 0.0 528
Msa0001510 MtrunA17_Chr6g0450631 43.478 207 111 6 55 259 49 251 3.24e-47 159
Msa0001510 MtrunA17_Chr1g0198561 41.546 207 115 6 55 259 49 251 1.17e-43 150
Msa0001510 MtrunA17_Chr2g0324401 49.091 55 28 0 205 259 9 63 8.18e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001510 AT2G43030.1 73.962 265 63 2 10 269 8 271 2.15e-131 373
Msa0001510 AT3G17465.1 37.209 215 132 3 55 268 78 290 1.90e-38 137

Find 91 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACAATCTTAAGCTTTC+TGG 0.097361 1_1:-3202551 None:intergenic
AAAGAGACTAATTAATTCTT+TGG 0.209215 1_1:-3202676 None:intergenic
AAAGCTCATCATTCCCAATT+TGG 0.228676 1_1:-3201961 None:intergenic
CAAATTGACCAAACCTGAAA+TGG 0.282604 1_1:+3202118 Msa0001510:CDS
CATTCCTATGCGCCATCTTC+AGG 0.308173 1_1:+3202163 Msa0001510:CDS
TTTACAATAAATCATGTCTT+AGG 0.320590 1_1:+3202842 Msa0001510:three_prime_UTR
GAAGGTATTGAAATGGAAAA+TGG 0.337920 1_1:-3201804 None:intergenic
ATGATCAAAGGTGCTCTTCC+TGG 0.365904 1_1:+3202598 Msa0001510:CDS
TTTCGTCTTCAATCCGTTGA+TGG 0.384156 1_1:+3202188 Msa0001510:CDS
CATTTCTCAGTAGCTGAGAT+TGG 0.387976 1_1:+3202802 Msa0001510:three_prime_UTR
TTTGACAATGAAGGGCTAAC+AGG 0.397586 1_1:-3202731 None:intergenic
TCAAATACAAGGCGCTGATT+AGG 0.398930 1_1:-3202218 None:intergenic
AAGATGACCCATTTCAGGTT+TGG 0.399688 1_1:-3202126 None:intergenic
CTCTTGGAACCATGGCTCAT+TGG 0.403785 1_1:-3202430 None:intergenic
TGGTGTGATGGGTACCAAAT+TGG 0.414953 1_1:+3201947 Msa0001510:CDS
GTTGTTCCCGTCACTGTTGT+CGG 0.415769 1_1:+3202002 Msa0001510:CDS
GGTGATCTTGTTGATGTCTC+TGG 0.428399 1_1:+3202257 Msa0001510:CDS
ATTAGAAGAAGGTATTGAAA+TGG 0.434138 1_1:-3201811 None:intergenic
AAGCTTTCTGGTCTTCCTGT+TGG 0.434373 1_1:-3202539 None:intergenic
ACGCCGTCCAAGTTGGTTAC+CGG 0.438083 1_1:+3202081 Msa0001510:CDS
TCCAAGTTGTCTGTGACTCT+TGG 0.442433 1_1:-3202446 None:intergenic
TCCAAGAGTCACAGACAACT+TGG 0.460086 1_1:+3202445 Msa0001510:CDS
TTCTTGCCAACAATCTTAGC+GGG 0.460342 1_1:-3202649 None:intergenic
GAGTTACAGACAAGTAGTTA+AGG 0.460373 1_1:-3202699 None:intergenic
ACTGTTGTCGGTTTCAAAGA+AGG 0.461503 1_1:+3202014 Msa0001510:CDS
AGAGGCTGGTGTTGGTGTGA+TGG 0.463975 1_1:+3201935 Msa0001510:CDS
TACACCTGGTCGCGTATACA+AGG 0.469173 1_1:+3202486 Msa0001510:CDS
TTTCAGGTTTGGTCAATTTG+CGG 0.469193 1_1:-3202115 None:intergenic
GTTGTAACCGTCGGTGGCGT+CGG 0.473671 1_1:-3202060 None:intergenic
AAAGAAGATGCCTGGTAGGA+TGG 0.474224 1_1:+3202510 Msa0001510:CDS
ATACATAAATTTGACAATGA+AGG 0.474290 1_1:-3202740 None:intergenic
GAGGCTGGTGTTGGTGTGAT+GGG 0.474712 1_1:+3201936 Msa0001510:CDS
TAACCCTCCGGTAACCAACT+TGG 0.478957 1_1:-3202088 None:intergenic
CACAGACAACTTGGATCCAT+TGG 0.481197 1_1:+3202454 Msa0001510:CDS
GTAGGATGGGTGGAACCAAC+AGG 0.493432 1_1:+3202524 Msa0001510:CDS
GAAGAAGAAGAATTAGAAGA+AGG 0.493725 1_1:-3201822 None:intergenic
TACGCGACCAGGTGTAGTTC+CGG 0.494636 1_1:-3202479 None:intergenic
TTTCCCTTGTATACGCGACC+AGG 0.499382 1_1:-3202490 None:intergenic
AGAAGATTACCAGGCTTACC+AGG 0.500896 1_1:-3202616 None:intergenic
ACGGGAACAACTTCACCGTT+AGG 0.508452 1_1:-3201990 None:intergenic
AAGAAGATGCCTGGTAGGAT+GGG 0.509948 1_1:+3202511 Msa0001510:CDS
TATACTATTCTTAATTCCTA+AGG 0.511742 1_1:+3202760 Msa0001510:three_prime_UTR
GGTGTGATGGGTACCAAATT+GGG 0.512034 1_1:+3201948 Msa0001510:CDS
AAATTGACCAAACCTGAAAT+GGG 0.513032 1_1:+3202119 Msa0001510:CDS
TTGAAACCGACAACAGTGAC+GGG 0.513527 1_1:-3202008 None:intergenic
GGTGCTCTTCCTGGTAAGCC+TGG 0.514459 1_1:+3202607 Msa0001510:CDS
TGAAATGGGTCATCTTGAAA+AGG 0.516033 1_1:+3202133 Msa0001510:CDS
AAGCGTCATAACTTCAAAAG+AGG 0.517261 1_1:+3202406 Msa0001510:CDS
AGGTGTAGTTCCGGCACCAA+TGG 0.518535 1_1:-3202470 None:intergenic
TACATAAATTTGACAATGAA+GGG 0.518660 1_1:-3202739 None:intergenic
TTGGTTCCACCCATCCTACC+AGG 0.519178 1_1:-3202520 None:intergenic
GATGTCTCTGGCACCACCAT+CGG 0.522268 1_1:+3202269 Msa0001510:CDS
GGTGGTGAAAATGAGCTTAG+AGG 0.522460 1_1:+3201917 Msa0001510:CDS
CTGAAGATGGCGCATAGGAA+TGG 0.527595 1_1:-3202162 None:intergenic
ATGGCGCATAGGAATGGCTC+CGG 0.528063 1_1:-3202156 None:intergenic
GTAAGCCTGGTAATCTTCTA+CGG 0.530779 1_1:+3202620 Msa0001510:CDS
GAACAACTTCACCGTTAGGT+TGG 0.533148 1_1:-3201986 None:intergenic
CTCTGGCACCACCATCGGCA+AGG 0.534330 1_1:+3202274 Msa0001510:CDS
TACAAGGGAAAGAAGATGCC+TGG 0.536322 1_1:+3202502 Msa0001510:CDS
GTCTGTGACTCTTGGAACCA+TGG 0.543733 1_1:-3202438 None:intergenic
ATGGGTCATCTTGAAAAGGC+CGG 0.565417 1_1:+3202137 Msa0001510:CDS
CAACTTGGATCCATTGGTGC+CGG 0.569215 1_1:+3202460 Msa0001510:CDS
ATTTGCGGTCTCTAACCCTC+CGG 0.569415 1_1:-3202100 None:intergenic
ATTAGGTTCAAAACCATCAA+CGG 0.570807 1_1:-3202201 None:intergenic
GAAGACGAAACTCCTGAAGA+TGG 0.571739 1_1:-3202175 None:intergenic
TCTGGCACCACCATCGGCAA+GGG 0.572275 1_1:+3202275 Msa0001510:CDS
CTTAATGTTATCATGATCAA+AGG 0.572918 1_1:+3202586 Msa0001510:CDS
ATTGGTGCCGGAACTACACC+TGG 0.580799 1_1:+3202472 Msa0001510:CDS
TTTGAAACCGACAACAGTGA+CGG 0.586413 1_1:-3202009 None:intergenic
CCGTCCAAGTTGGTTACCGG+AGG 0.591201 1_1:+3202084 Msa0001510:CDS
GTTCTTGCCAACAATCTTAG+CGG 0.594511 1_1:-3202650 None:intergenic
AAGATGCCTGGTAGGATGGG+TGG 0.594546 1_1:+3202514 Msa0001510:CDS
ACCTTGAAAACCCTTGCCGA+TGG 0.600155 1_1:-3202285 None:intergenic
TGAAAAGCTCATCAAATACA+AGG 0.600821 1_1:-3202229 None:intergenic
GCTATCCGTAGAAGATTACC+AGG 0.602366 1_1:-3202625 None:intergenic
AGGGAAAGAAGATGCCTGGT+AGG 0.605040 1_1:+3202506 Msa0001510:CDS
TTGAAAACCCTTGCCGATGG+TGG 0.607518 1_1:-3202282 None:intergenic
ATCAAAACCGACGCCACCGA+CGG 0.609949 1_1:+3202053 Msa0001510:CDS
GGTTACAACGCCGTCCAAGT+TGG 0.618166 1_1:+3202074 Msa0001510:CDS
TATTGAAATGGAAAATGGTG+AGG 0.627513 1_1:-3201799 None:intergenic
AACTCCTGAAGATGGCGCAT+AGG 0.631101 1_1:-3202167 None:intergenic
GTGAAAATGAGCTTAGAGGC+TGG 0.634928 1_1:+3201921 Msa0001510:CDS
TCTTGCCAACAATCTTAGCG+GGG 0.638407 1_1:-3202648 None:intergenic
CCTCCGGTAACCAACTTGGA+CGG 0.639997 1_1:-3202084 None:intergenic
ATGAGCTTAGAGGCTGGTGT+TGG 0.640133 1_1:+3201927 Msa0001510:CDS
AAAAGAGGACCAATGAGCCA+TGG 0.640937 1_1:+3202421 Msa0001510:CDS
CGTCCAAGTTGGTTACCGGA+GGG 0.643249 1_1:+3202085 Msa0001510:CDS
CTTGCCAACAATCTTAGCGG+GGG 0.643846 1_1:-3202647 None:intergenic
GACGGCGTTGTAACCGTCGG+TGG 0.648118 1_1:-3202066 None:intergenic
TTGGACGGCGTTGTAACCGT+CGG 0.663802 1_1:-3202069 None:intergenic
ACACCTGGTCGCGTATACAA+GGG 0.687415 1_1:+3202487 Msa0001510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATCTTTCACTAA+TGG + chr1_1:3202353-3202372 Msa0001510:intron 15.0%
!! ATAATAATATCTTTCACTAA+TGG + chr1_1:3202353-3202372 Msa0001510:intron 15.0%
!! AAAGAGACTAATTAATTCTT+TGG - chr1_1:3202679-3202698 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - chr1_1:3202742-3202761 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - chr1_1:3202743-3202762 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + chr1_1:3202760-3202779 Msa0001510:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + chr1_1:3202842-3202861 Msa0001510:three_prime_UTR 20.0%
!! AAAGAGACTAATTAATTCTT+TGG - chr1_1:3202679-3202698 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - chr1_1:3202742-3202761 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - chr1_1:3202743-3202762 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + chr1_1:3202760-3202779 Msa0001510:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + chr1_1:3202842-3202861 Msa0001510:three_prime_UTR 20.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - chr1_1:3201814-3201833 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - chr1_1:3201853-3201872 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - chr1_1:3202554-3202573 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + chr1_1:3202586-3202605 Msa0001510:CDS 25.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - chr1_1:3201814-3201833 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - chr1_1:3201853-3201872 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - chr1_1:3202554-3202573 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + chr1_1:3202586-3202605 Msa0001510:CDS 25.0%
TATTGAAATGGAAAATGGTG+AGG - chr1_1:3201802-3201821 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - chr1_1:3201807-3201826 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - chr1_1:3201825-3201844 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + chr1_1:3202119-3202138 Msa0001510:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - chr1_1:3202204-3202223 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - chr1_1:3202232-3202251 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + chr1_1:3202236-3202255 Msa0001510:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - chr1_1:3202336-3202355 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - chr1_1:3202337-3202356 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + chr1_1:3202376-3202395 Msa0001510:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - chr1_1:3202779-3202798 None:intergenic 30.0%
TATTGAAATGGAAAATGGTG+AGG - chr1_1:3201802-3201821 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - chr1_1:3201807-3201826 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - chr1_1:3201825-3201844 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + chr1_1:3202119-3202138 Msa0001510:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - chr1_1:3202204-3202223 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - chr1_1:3202232-3202251 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + chr1_1:3202236-3202255 Msa0001510:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - chr1_1:3202336-3202355 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - chr1_1:3202337-3202356 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + chr1_1:3202376-3202395 Msa0001510:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - chr1_1:3202779-3202798 None:intergenic 30.0%
AAAGCTCATCATTCCCAATT+TGG - chr1_1:3201964-3201983 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + chr1_1:3201975-3201994 Msa0001510:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - chr1_1:3202118-3202137 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + chr1_1:3202118-3202137 Msa0001510:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - chr1_1:3202134-3202153 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + chr1_1:3202133-3202152 Msa0001510:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + chr1_1:3202379-3202398 Msa0001510:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + chr1_1:3202406-3202425 Msa0001510:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - chr1_1:3202702-3202721 None:intergenic 35.0%
AAAGCTCATCATTCCCAATT+TGG - chr1_1:3201964-3201983 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + chr1_1:3201975-3201994 Msa0001510:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - chr1_1:3202118-3202137 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + chr1_1:3202118-3202137 Msa0001510:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - chr1_1:3202134-3202153 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + chr1_1:3202133-3202152 Msa0001510:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + chr1_1:3202379-3202398 Msa0001510:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + chr1_1:3202406-3202425 Msa0001510:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - chr1_1:3202702-3202721 None:intergenic 35.0%
TTGCAGCAGCAAAGAAAAAG+AGG + chr1_1:3201885-3201904 Msa0001510:CDS 40.0%
! TTTGAAACCGACAACAGTGA+CGG - chr1_1:3202012-3202031 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + chr1_1:3202014-3202033 Msa0001510:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - chr1_1:3202129-3202148 None:intergenic 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + chr1_1:3202188-3202207 Msa0001510:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - chr1_1:3202221-3202240 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - chr1_1:3202323-3202342 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - chr1_1:3202324-3202343 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + chr1_1:3202620-3202639 Msa0001510:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - chr1_1:3202652-3202671 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - chr1_1:3202653-3202672 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - chr1_1:3202734-3202753 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + chr1_1:3202802-3202821 Msa0001510:three_prime_UTR 40.0%
GAATGAAACACAACACCAAC+TGG - chr1_1:3201719-3201738 None:intergenic 40.0%
TTGCAGCAGCAAAGAAAAAG+AGG + chr1_1:3201885-3201904 Msa0001510:CDS 40.0%
! TTTGAAACCGACAACAGTGA+CGG - chr1_1:3202012-3202031 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + chr1_1:3202014-3202033 Msa0001510:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - chr1_1:3202129-3202148 None:intergenic 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + chr1_1:3202188-3202207 Msa0001510:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - chr1_1:3202221-3202240 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - chr1_1:3202323-3202342 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - chr1_1:3202324-3202343 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + chr1_1:3202620-3202639 Msa0001510:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - chr1_1:3202652-3202671 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - chr1_1:3202653-3202672 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - chr1_1:3202734-3202753 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + chr1_1:3202802-3202821 Msa0001510:three_prime_UTR 40.0%
CAGCAGCAAAGAAAAAGAGG+AGG + chr1_1:3201888-3201907 Msa0001510:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + chr1_1:3201896-3201915 Msa0001510:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + chr1_1:3201917-3201936 Msa0001510:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + chr1_1:3201921-3201940 Msa0001510:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + chr1_1:3201947-3201966 Msa0001510:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + chr1_1:3201948-3201967 Msa0001510:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - chr1_1:3201989-3202008 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - chr1_1:3202011-3202030 None:intergenic 45.0%
ATGGGTCATCTTGAAAAGGC+CGG + chr1_1:3202137-3202156 Msa0001510:CDS 45.0%
GAAGACGAAACTCCTGAAGA+TGG - chr1_1:3202178-3202197 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + chr1_1:3202257-3202276 Msa0001510:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + chr1_1:3202421-3202440 Msa0001510:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + chr1_1:3202445-3202464 Msa0001510:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - chr1_1:3202449-3202468 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + chr1_1:3202454-3202473 Msa0001510:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + chr1_1:3202502-3202521 Msa0001510:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + chr1_1:3202510-3202529 Msa0001510:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + chr1_1:3202511-3202530 Msa0001510:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - chr1_1:3202542-3202561 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + chr1_1:3202598-3202617 Msa0001510:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - chr1_1:3202619-3202638 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - chr1_1:3202628-3202647 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - chr1_1:3202651-3202670 None:intergenic 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG + chr1_1:3201888-3201907 Msa0001510:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + chr1_1:3201896-3201915 Msa0001510:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + chr1_1:3201917-3201936 Msa0001510:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + chr1_1:3201921-3201940 Msa0001510:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + chr1_1:3201947-3201966 Msa0001510:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + chr1_1:3201948-3201967 Msa0001510:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - chr1_1:3201989-3202008 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - chr1_1:3202011-3202030 None:intergenic 45.0%
ATGGGTCATCTTGAAAAGGC+CGG + chr1_1:3202137-3202156 Msa0001510:CDS 45.0%
GAAGACGAAACTCCTGAAGA+TGG - chr1_1:3202178-3202197 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + chr1_1:3202257-3202276 Msa0001510:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + chr1_1:3202421-3202440 Msa0001510:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + chr1_1:3202445-3202464 Msa0001510:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - chr1_1:3202449-3202468 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + chr1_1:3202454-3202473 Msa0001510:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + chr1_1:3202502-3202521 Msa0001510:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + chr1_1:3202510-3202529 Msa0001510:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + chr1_1:3202511-3202530 Msa0001510:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - chr1_1:3202542-3202561 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + chr1_1:3202598-3202617 Msa0001510:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - chr1_1:3202619-3202638 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - chr1_1:3202628-3202647 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - chr1_1:3202651-3202670 None:intergenic 45.0%
AAAAAGAGGAGGAGCGATGG+TGG + chr1_1:3201899-3201918 Msa0001510:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + chr1_1:3201927-3201946 Msa0001510:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - chr1_1:3201993-3202012 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + chr1_1:3202002-3202021 Msa0001510:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - chr1_1:3202091-3202110 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - chr1_1:3202103-3202122 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - chr1_1:3202165-3202184 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + chr1_1:3202163-3202182 Msa0001510:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - chr1_1:3202170-3202189 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - chr1_1:3202285-3202304 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + chr1_1:3202284-3202303 Msa0001510:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - chr1_1:3202288-3202307 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - chr1_1:3202433-3202452 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - chr1_1:3202441-3202460 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + chr1_1:3202460-3202479 Msa0001510:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + chr1_1:3202486-3202505 Msa0001510:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + chr1_1:3202487-3202506 Msa0001510:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - chr1_1:3202493-3202512 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + chr1_1:3202506-3202525 Msa0001510:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + chr1_1:3202643-3202662 Msa0001510:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - chr1_1:3202650-3202669 None:intergenic 50.0%
AAAAAGAGGAGGAGCGATGG+TGG + chr1_1:3201899-3201918 Msa0001510:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + chr1_1:3201927-3201946 Msa0001510:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - chr1_1:3201993-3202012 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + chr1_1:3202002-3202021 Msa0001510:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - chr1_1:3202091-3202110 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - chr1_1:3202103-3202122 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - chr1_1:3202165-3202184 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + chr1_1:3202163-3202182 Msa0001510:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - chr1_1:3202170-3202189 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - chr1_1:3202285-3202304 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + chr1_1:3202284-3202303 Msa0001510:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - chr1_1:3202288-3202307 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - chr1_1:3202433-3202452 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - chr1_1:3202441-3202460 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + chr1_1:3202460-3202479 Msa0001510:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + chr1_1:3202486-3202505 Msa0001510:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + chr1_1:3202487-3202506 Msa0001510:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - chr1_1:3202493-3202512 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + chr1_1:3202506-3202525 Msa0001510:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + chr1_1:3202643-3202662 Msa0001510:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - chr1_1:3202650-3202669 None:intergenic 50.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + chr1_1:3201935-3201954 Msa0001510:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + chr1_1:3201936-3201955 Msa0001510:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + chr1_1:3202053-3202072 Msa0001510:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - chr1_1:3202072-3202091 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + chr1_1:3202074-3202093 Msa0001510:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + chr1_1:3202081-3202100 Msa0001510:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - chr1_1:3202087-3202106 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + chr1_1:3202085-3202104 Msa0001510:CDS 55.0%
ATGGCGCATAGGAATGGCTC+CGG - chr1_1:3202159-3202178 None:intergenic 55.0%
GATGTCTCTGGCACCACCAT+CGG + chr1_1:3202269-3202288 Msa0001510:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - chr1_1:3202473-3202492 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + chr1_1:3202472-3202491 Msa0001510:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - chr1_1:3202482-3202501 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + chr1_1:3202514-3202533 Msa0001510:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - chr1_1:3202523-3202542 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + chr1_1:3202524-3202543 Msa0001510:CDS 55.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + chr1_1:3201935-3201954 Msa0001510:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + chr1_1:3201936-3201955 Msa0001510:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + chr1_1:3202053-3202072 Msa0001510:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - chr1_1:3202072-3202091 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + chr1_1:3202074-3202093 Msa0001510:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + chr1_1:3202081-3202100 Msa0001510:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - chr1_1:3202087-3202106 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + chr1_1:3202085-3202104 Msa0001510:CDS 55.0%
ATGGCGCATAGGAATGGCTC+CGG - chr1_1:3202159-3202178 None:intergenic 55.0%
GATGTCTCTGGCACCACCAT+CGG + chr1_1:3202269-3202288 Msa0001510:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - chr1_1:3202473-3202492 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + chr1_1:3202472-3202491 Msa0001510:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - chr1_1:3202482-3202501 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + chr1_1:3202514-3202533 Msa0001510:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - chr1_1:3202523-3202542 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + chr1_1:3202524-3202543 Msa0001510:CDS 55.0%
GTTGTAACCGTCGGTGGCGT+CGG - chr1_1:3202063-3202082 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + chr1_1:3202084-3202103 Msa0001510:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + chr1_1:3202275-3202294 Msa0001510:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + chr1_1:3202607-3202626 Msa0001510:CDS 60.0%
GTTGTAACCGTCGGTGGCGT+CGG - chr1_1:3202063-3202082 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + chr1_1:3202084-3202103 Msa0001510:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + chr1_1:3202275-3202294 Msa0001510:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + chr1_1:3202607-3202626 Msa0001510:CDS 60.0%
GACGGCGTTGTAACCGTCGG+TGG - chr1_1:3202069-3202088 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + chr1_1:3202274-3202293 Msa0001510:CDS 65.0%
GACGGCGTTGTAACCGTCGG+TGG - chr1_1:3202069-3202088 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + chr1_1:3202274-3202293 Msa0001510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3201719 3202882 3201719 ID=Msa0001510;Name=Msa0001510
chr1_1 mRNA 3201719 3202882 3201719 ID=Msa0001510-mRNA-1;Parent=Msa0001510;Name=Msa0001510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|195|269
chr1_1 exon 3201719 3202305 3201719 ID=Msa0001510-mRNA-1:exon:816;Parent=Msa0001510-mRNA-1
chr1_1 exon 3202398 3202882 3202398 ID=Msa0001510-mRNA-1:exon:817;Parent=Msa0001510-mRNA-1
chr1_1 five_prime_UTR 3201719 3201785 3201719 ID=Msa0001510-mRNA-1:five_prime_utr;Parent=Msa0001510-mRNA-1
chr1_1 CDS 3201786 3202305 3201786 ID=Msa0001510-mRNA-1:cds;Parent=Msa0001510-mRNA-1
chr1_1 CDS 3202398 3202687 3202398 ID=Msa0001510-mRNA-1:cds;Parent=Msa0001510-mRNA-1
chr1_1 three_prime_UTR 3202688 3202882 3202688 ID=Msa0001510-mRNA-1:three_prime_utr;Parent=Msa0001510-mRNA-1
Gene Sequence

>Msa0001510

ATGTCTATCATTTCCTCACCATTTTCCATTTCAATACCTTCTTCTAATTCTTCTTCTTCACTTTCCTTTTCAACTTCTTTTTCTACTCAATTTGTGAAATTGCAGCAGCAAAGAAAAAGAGGAGGAGCGATGGTGGTGAAAATGAGCTTAGAGGCTGGTGTTGGTGTGATGGGTACCAAATTGGGAATGATGAGCTTTTTCCAACCTAACGGTGAAGTTGTTCCCGTCACTGTTGTCGGTTTCAAAGAAGGCAACATCGTCACTCAAATCAAAACCGACGCCACCGACGGTTACAACGCCGTCCAAGTTGGTTACCGGAGGGTTAGAGACCGCAAATTGACCAAACCTGAAATGGGTCATCTTGAAAAGGCCGGAGCCATTCCTATGCGCCATCTTCAGGAGTTTCGTCTTCAATCCGTTGATGGTTTTGAACCTAATCAGCGCCTTGTATTTGATGAGCTTTTCAATGAAGGTGATCTTGTTGATGTCTCTGGCACCACCATCGGCAAGGGTTTTCAAGGTGGTATCAAGCGTCATAACTTCAAAAGAGGACCAATGAGCCATGGTTCCAAGAGTCACAGACAACTTGGATCCATTGGTGCCGGAACTACACCTGGTCGCGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGTGGAACCAACAGGAAGACCAGAAAGCTTAAGATTGTTAAAATTGATAAAGATCTTAATGTTATCATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGTAATCTTCTACGGATAGCCCCCGCTAAGATTGTTGGCAAGAACATTCCAAAGAATTAA

Protein sequence

>Msa0001510

MSIISSPFSISIPSSNSSSSLSFSTSFSTQFVKLQQQRKRGGAMVVKMSLEAGVGVMGTKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHLEKAGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN*