AlfalfaGEDB | Msa0373640

M. sativa cultivar zhongmu-4 / Msa0373640

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF20133.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373640	XP_003601843.1	96.930	228	6	1	1	228	1	227	8.94e-162	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373640	sp\|Q8LDL0\|HHL1_ARATH	70.085	234	60	5	1	228	1	230	1.74e-111	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373640	G7J2I7	96.930	228	6	1	1	228	1	227	4.27e-162	456

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0373640	0.911939	3.444294e-83	-8.615850e-47
Msa0001540	Msa0373640	0.818600	1.800793e-52	-8.615850e-47
Msa0002690	Msa0373640	0.858878	6.088224e-63	-8.615850e-47
Msa0002700	Msa0373640	0.847455	1.144346e-59	-8.615850e-47
Msa0004180	Msa0373640	0.841492	4.597556e-58	-8.615850e-47
Msa0007570	Msa0373640	0.868129	8.214867e-66	-8.615850e-47
Msa0011060	Msa0373640	0.813632	2.320505e-51	-8.615850e-47
Msa0011100	Msa0373640	0.804078	2.567281e-49	-8.615850e-47
Msa0011910	Msa0373640	0.825446	4.668191e-54	-8.615850e-47
Msa0015220	Msa0373640	0.880478	5.311836e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373640	MtrunA17_Chr3g0123081	96.930	228	6	1	1	228	1	227	8.23e-166	456

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373640	AT1G67700.2	70.085	234	60	5	1	228	1	230	1.77e-112	322
Msa0373640	AT1G67700.5	70.085	234	60	5	1	228	1	230	1.77e-112	322
Msa0373640	AT1G67700.4	70.085	234	60	5	1	228	1	230	2.73e-112	321
Msa0373640	AT1G67700.1	70.085	234	60	5	1	228	1	230	2.73e-112	321
Msa0373640	AT1G67700.3	69.658	234	60	6	1	228	1	229	1.04e-109	315

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Find 66 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTCTAAAGCTCATA+CGG	0.537225	3_1:-72707388	None:intergenic
AAGTAATGGTGTGATTATAA+AGG	0.405154	3_1:-72707524	None:intergenic
AATGCAAGAATATTACAACT+CGG	0.706659	3_1:-72707577	None:intergenic
ACAACACCGTGTACTAAAGT+CGG	0.619103	3_1:+72706262	Msa0373640:CDS
ACTAACTCAGGTAACTGGAT+AGG	0.506656	3_1:-72704692	None:intergenic
AGAACATAAAATTATGTGTT+GGG	0.454543	3_1:-72707486	None:intergenic
AGAGAGAGAGAATTCGATAT+AGG	0.383032	3_1:-72704647	None:intergenic
AGATGTAAAGGAGTCCTTTG+GGG	0.702608	3_1:+72707113	Msa0373640:CDS
ATCTCGAAACGCATGGAAGT+AGG	0.561046	3_1:+72704742	Msa0373640:exon
ATTACCGTCGTCTTCAATTT+TGG	0.126709	3_1:-72704968	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATGGCTAATGTTTATCTT+TGG	+	chr3_1:72705013-72705032	Msa0373640:CDS	30.0%
TATCCTCTTAGTATTGTTTC+TGG	+	chr3_1:72705036-72705055	Msa0373640:CDS	30.0%
TTAGGGGAAAAAATCTTACT+CGG	-	chr3_1:72705161-72705180	None:intergenic	30.0%
CACAAATAATCATCAACAAC+GGG	-	chr3_1:72705338-72705357	None:intergenic	30.0%
CAAGTTAGAATCAATTCTAG+AGG	-	chr3_1:72705398-72705417	None:intergenic	30.0%
AAGGTAAAGTCATTCATGTT+TGG	-	chr3_1:72705506-72705525	None:intergenic	30.0%
ATACCAAGCAGTTAAATACA+TGG	-	chr3_1:72705680-72705699	None:intergenic	30.0%
GACTAAATTCATAATAAGCG+CGG	-	chr3_1:72705753-72705772	None:intergenic	30.0%
TCACATTGATGTTAGTCAAA+TGG	-	chr3_1:72705902-72705921	None:intergenic	30.0%
GAACTACGTGTATGAAAATA+CGG	+	chr3_1:72705942-72705961	Msa0373640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	72704622	72707783	72704622	ID=Msa0373640;Name=Msa0373640
chr3_1	mRNA	72704622	72707783	72704622	ID=Msa0373640-mRNA-1;Parent=Msa0373640;Name=Msa0373640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132\|1\|1\|1\|0.75\|0.6\|5\|493\|228
chr3_1	exon	72704622	72705161	72704622	ID=Msa0373640-mRNA-1:exon:16370;Parent=Msa0373640-mRNA-1
chr3_1	exon	72706230	72706316	72706230	ID=Msa0373640-mRNA-1:exon:16371;Parent=Msa0373640-mRNA-1
chr3_1	exon	72706420	72706467	72706420	ID=Msa0373640-mRNA-1:exon:16372;Parent=Msa0373640-mRNA-1
chr3_1	exon	72707057	72707236	72707057	ID=Msa0373640-mRNA-1:exon:16373;Parent=Msa0373640-mRNA-1
chr3_1	exon	72707327	72707783	72707327	ID=Msa0373640-mRNA-1:exon:16374;Parent=Msa0373640-mRNA-1
chr3_1	five_prime_UTR	72704622	72704753	72704622	ID=Msa0373640-mRNA-1:five_prime_utr;Parent=Msa0373640-mRNA-1
chr3_1	CDS	72704754	72705161	72704754	ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1	CDS	72706230	72706316	72706230	ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1	CDS	72706420	72706467	72706420	ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1	CDS	72707057	72707200	72707057	ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1	three_prime_UTR	72707201	72707236	72707201	ID=Msa0373640-mRNA-1:three_prime_utr;Parent=Msa0373640-mRNA-1
chr3_1	three_prime_UTR	72707327	72707783	72707327	ID=Msa0373640-mRNA-1:three_prime_utr;Parent=Msa0373640-mRNA-1

Gene Sequence

>Msa0373640

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCCCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0373640

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*