AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373640 MtrunA17_Chr3g0123081 96.930 228 6 1 1 228 1 227 8.23e-166 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373640 AT1G67700.2 70.085 234 60 5 1 228 1 230 1.77e-112 322
Msa0373640 AT1G67700.5 70.085 234 60 5 1 228 1 230 1.77e-112 322
Msa0373640 AT1G67700.4 70.085 234 60 5 1 228 1 230 2.73e-112 321
Msa0373640 AT1G67700.1 70.085 234 60 5 1 228 1 230 2.73e-112 321
Msa0373640 AT1G67700.3 69.658 234 60 6 1 228 1 229 1.04e-109 315

Find 66 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGTTGGCGTTGAGTTC+TGG 0.117900 3_1:-72704857 None:intergenic
ATTACCGTCGTCTTCAATTT+TGG 0.126709 3_1:-72704968 None:intergenic
TATCCTCTTAGTATTGTTTC+TGG 0.147550 3_1:+72705036 Msa0373640:CDS
CGAATGAAGACGACGAATTT+AGG 0.163591 3_1:-72704991 None:intergenic
TCTTGGCAAATTTATTTATA+AGG 0.207596 3_1:+72705101 Msa0373640:CDS
TGTGCTAATACCAGGGTTAA+AGG 0.270565 3_1:+72707313 Msa0373640:intron
GCTTTGTGCTGTTTGTAAAT+TGG 0.299833 3_1:+72707406 Msa0373640:three_prime_UTR
GCTGTTTGTAAATTGGTTAA+TGG 0.314824 3_1:+72707413 Msa0373640:three_prime_UTR
GTATGGCTAATGTTTATCTT+TGG 0.328706 3_1:+72705013 Msa0373640:CDS
GGAGATGTAAAGGAGTCCTT+TGG 0.366310 3_1:+72707111 Msa0373640:CDS
AGAGAGAGAGAATTCGATAT+AGG 0.383032 3_1:-72704647 None:intergenic
TGGTACCACTGCTAAAATTA+TGG 0.385812 3_1:+72705059 Msa0373640:CDS
TGATGTTGGCGTTGAGTTCT+GGG 0.389647 3_1:-72704856 None:intergenic
TTAAAGGATGAACTTATATC+AGG 0.402851 3_1:+72707329 Msa0373640:three_prime_UTR
TGGTAACTAACTCAGGTAAC+TGG 0.402970 3_1:-72704697 None:intergenic
AAGTAATGGTGTGATTATAA+AGG 0.405154 3_1:-72707524 None:intergenic
GAGTGAGTCGTTGTGGAACC+TGG 0.423768 3_1:-72704812 None:intergenic
GAGAGAGAGAATTCGATATA+GGG 0.423810 3_1:-72704646 None:intergenic
TGAGTTCTGGGGAATTGTCT+TGG 0.431127 3_1:-72704844 None:intergenic
TAAAATTATGTGTTGGGTGC+AGG 0.440944 3_1:-72707480 None:intergenic
GAGATGTAAAGGAGTCCTTT+GGG 0.442632 3_1:+72707112 Msa0373640:CDS
TGCAGGTATAAGAACAAAAC+AGG 0.451906 3_1:-72707463 None:intergenic
GATTATGAATTGCAGGAGAA+TGG 0.452904 3_1:+72706405 Msa0373640:intron
TCGGCTACTGAATTCAGATA+TGG 0.454393 3_1:+72706281 Msa0373640:CDS
AGAACATAAAATTATGTGTT+GGG 0.454543 3_1:-72707486 None:intergenic
CATGCGTTTCGAGATTCTCT+CGG 0.455696 3_1:-72704734 None:intergenic
TGATGCAACATATTTGATAG+AGG 0.456476 3_1:+72707215 Msa0373640:three_prime_UTR
TTCTACCAGTGATGTTATTG+AGG 0.459749 3_1:+72706446 Msa0373640:CDS
TTGAATCGTTAAGTGCTGTT+TGG 0.475884 3_1:+72707363 Msa0373640:three_prime_UTR
TCTCGGAGTTGTTGTGATGA+TGG 0.503996 3_1:-72704717 None:intergenic
CACTATCAAGTTCAAGCTCC+AGG 0.504458 3_1:+72704794 Msa0373640:CDS
ACTAACTCAGGTAACTGGAT+AGG 0.506656 3_1:-72704692 None:intergenic
ATTCGTCGTCTTCATTCGTA+TGG 0.513591 3_1:+72704996 Msa0373640:CDS
TCTGGGGAATTGTCTTGGAA+TGG 0.516106 3_1:-72704839 None:intergenic
CTAACTCAGGTAACTGGATA+GGG 0.518303 3_1:-72704691 None:intergenic
TCAGAAATGTCTTAAAGTAA+TGG 0.522609 3_1:-72707538 None:intergenic
CCTCTTAGTATTGTTTCTGG+TGG 0.528582 3_1:+72705039 Msa0373640:CDS
TGTCTTGGTTGTTGAAGCAA+AGG 0.532305 3_1:+72704891 Msa0373640:CDS
AAAGCTTTCTAAAGCTCATA+CGG 0.537225 3_1:-72707388 None:intergenic
CATGGTGGTGGTGGTGATGT+TGG 0.538747 3_1:-72704870 None:intergenic
TCACCACCACCACCATGTCT+TGG 0.542043 3_1:+72704876 Msa0373640:CDS
GTCTTGGTTGTTGAAGCAAA+GGG 0.544651 3_1:+72704892 Msa0373640:CDS
CCACCAGAAACAATACTAAG+AGG 0.550315 3_1:-72705039 None:intergenic
TCAATTCAAATAGGATGAGA+AGG 0.553484 3_1:+72706217 Msa0373640:intron
ATCTCGAAACGCATGGAAGT+AGG 0.561046 3_1:+72704742 Msa0373640:exon
CTGGAGCTTGAACTTGATAG+TGG 0.561983 3_1:-72704793 None:intergenic
TGAATCTTCCTCTGACTCAT+CGG 0.568977 3_1:-72707160 None:intergenic
TATCACCTCAATAACATCAC+TGG 0.580790 3_1:-72706451 None:intergenic
CAACCAAGACATGGTGGTGG+TGG 0.586870 3_1:-72704879 None:intergenic
TGGAGAAGAGTGAGTCGTTG+TGG 0.587691 3_1:-72704819 None:intergenic
CGAGAGAATCTCGAAACGCA+TGG 0.599024 3_1:+72704735 Msa0373640:exon
TACTGCTACCGATGAGTCAG+AGG 0.607803 3_1:+72707152 Msa0373640:CDS
CAGAACATAAAATTATGTGT+TGG 0.611659 3_1:-72707487 None:intergenic
ACAACACCGTGTACTAAAGT+CGG 0.619103 3_1:+72706262 Msa0373640:CDS
TAACGATGTTATTTCCCCAA+AGG 0.619108 3_1:-72707127 None:intergenic
TAATGGTGTGATTATAAAGG+TGG 0.621125 3_1:-72707521 None:intergenic
TTGCTTCAACAACCAAGACA+TGG 0.623521 3_1:-72704888 None:intergenic
GTGATGATGGTAACTAACTC+AGG 0.627403 3_1:-72704704 None:intergenic
GAGCTTGAACTTGATAGTGG+TGG 0.644572 3_1:-72704790 None:intergenic
GATGTTGGCGTTGAGTTCTG+GGG 0.652469 3_1:-72704855 None:intergenic
CAGTAGCCGACTTTAGTACA+CGG 0.657329 3_1:-72706268 None:intergenic
CAACAACCAAGACATGGTGG+TGG 0.667199 3_1:-72704882 None:intergenic
CTTCAACAACCAAGACATGG+TGG 0.675309 3_1:-72704885 None:intergenic
TTACCCAAAATTGAAGACGA+CGG 0.694339 3_1:+72704964 Msa0373640:CDS
AGATGTAAAGGAGTCCTTTG+GGG 0.702608 3_1:+72707113 Msa0373640:CDS
AATGCAAGAATATTACAACT+CGG 0.706659 3_1:-72707577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAAAAAAAAGTTA+GGG - chr3_1:72705178-72705197 None:intergenic 10.0%
!! AAATTAATGAAAAAAAAGTT+AGG - chr3_1:72705179-72705198 None:intergenic 10.0%
!!! TTTAAATGTTCATAATTTTA+TGG + chr3_1:72705828-72705847 Msa0373640:intron 10.0%
!! AAATATATGTATTGAAATAT+AGG - chr3_1:72706328-72706347 None:intergenic 10.0%
!! ATTAATGAAAAAAAAGTTAG+GGG - chr3_1:72705177-72705196 None:intergenic 15.0%
!! AAAAAAAAAAATATCGAGAA+TGG + chr3_1:72705245-72705264 Msa0373640:intron 15.0%
!! AAAAAAAAAATATCGAGAAT+GGG + chr3_1:72705246-72705265 Msa0373640:intron 15.0%
!! TATGAACATTTAAAAAATCA+TGG - chr3_1:72705822-72705841 None:intergenic 15.0%
!! TAATAACTATACAGAAATAA+TGG + chr3_1:72706607-72706626 Msa0373640:intron 15.0%
!! ATTTATGAAATATGATAGAT+AGG + chr3_1:72706680-72706699 Msa0373640:intron 15.0%
!!! TTTTATTGTTTGTTGTTTTA+TGG + chr3_1:72707676-72707695 Msa0373640:three_prime_UTR 15.0%
!!! TTTATTGTTTGTTGTTTTAT+GGG + chr3_1:72707677-72707696 Msa0373640:three_prime_UTR 15.0%
!! TCTTGGCAAATTTATTTATA+AGG + chr3_1:72705101-72705120 Msa0373640:CDS 20.0%
!! AAAAAAAAATATCGAGAATG+GGG + chr3_1:72705247-72705266 Msa0373640:intron 20.0%
!!! TTTACCTTCAAGATAATTTT+AGG + chr3_1:72705518-72705537 Msa0373640:intron 20.0%
!! ACTCTATTAAACTTTCAAAT+TGG + chr3_1:72705653-72705672 Msa0373640:intron 20.0%
!! ACAAATAAAAGTTCAGTTTA+AGG - chr3_1:72706484-72706503 None:intergenic 20.0%
!!! ATCTCTACAATTTTCAATTA+GGG - chr3_1:72706880-72706899 None:intergenic 20.0%
!!! AATCTCTACAATTTTCAATT+AGG - chr3_1:72706881-72706900 None:intergenic 20.0%
!!! ATGCTTTCTTTTTAGTTATA+AGG + chr3_1:72706954-72706973 Msa0373640:intron 20.0%
!! AGAACATAAAATTATGTGTT+GGG - chr3_1:72707489-72707508 None:intergenic 20.0%
! ACACAAATAATCATCAACAA+CGG - chr3_1:72705339-72705358 None:intergenic 25.0%
! AAAGTTAAGCACTAATATAG+TGG - chr3_1:72705579-72705598 None:intergenic 25.0%
! ATATTAGTGCTTAACTTTGT+AGG + chr3_1:72705581-72705600 Msa0373640:intron 25.0%
! TATTAGTGCTTAACTTTGTA+GGG + chr3_1:72705582-72705601 Msa0373640:intron 25.0%
!! AAGATCAAATTGATAGTAAG+TGG - chr3_1:72705721-72705740 None:intergenic 25.0%
! ATAGACAACGGATAAAATTT+CGG + chr3_1:72706002-72706021 Msa0373640:intron 25.0%
!! TTTTTCTTGGTTATGTATGT+TGG + chr3_1:72706154-72706173 Msa0373640:intron 25.0%
!!! TTTTTCAGATTATGAATTGC+AGG + chr3_1:72706398-72706417 Msa0373640:intron 25.0%
! TATTTAAAGACAATACTCCA+AGG + chr3_1:72706777-72706796 Msa0373640:intron 25.0%
!!! CTATTTAAAGACTTGCTAAT+AGG + chr3_1:72706800-72706819 Msa0373640:intron 25.0%
!!! TTTTGTTATGATGGTTGTTT+AGG - chr3_1:72706853-72706872 None:intergenic 25.0%
!!! TAGGGATATTTTTGTTATGA+TGG - chr3_1:72706862-72706881 None:intergenic 25.0%
!!! GGTTCTTTTTCATAATATTG+AGG + chr3_1:72706975-72706994 Msa0373640:intron 25.0%
!! GATAAAGTGAAAGACTTTTT+CGG + chr3_1:72707090-72707109 Msa0373640:CDS 25.0%
! TTAAAGGATGAACTTATATC+AGG + chr3_1:72707329-72707348 Msa0373640:three_prime_UTR 25.0%
! CAGAACATAAAATTATGTGT+TGG - chr3_1:72707490-72707509 None:intergenic 25.0%
! AAGTAATGGTGTGATTATAA+AGG - chr3_1:72707527-72707546 None:intergenic 25.0%
! TCAGAAATGTCTTAAAGTAA+TGG - chr3_1:72707541-72707560 None:intergenic 25.0%
! AATGCAAGAATATTACAACT+CGG - chr3_1:72707580-72707599 None:intergenic 25.0%
!!! ATTCTTGCATTTTATTTCAC+AGG + chr3_1:72707589-72707608 Msa0373640:three_prime_UTR 25.0%
GTATGGCTAATGTTTATCTT+TGG + chr3_1:72705013-72705032 Msa0373640:CDS 30.0%
TATCCTCTTAGTATTGTTTC+TGG + chr3_1:72705036-72705055 Msa0373640:CDS 30.0%
! GCTGCTAAAGATAATTTTCT+TGG + chr3_1:72705084-72705103 Msa0373640:CDS 30.0%
TTAGGGGAAAAAATCTTACT+CGG - chr3_1:72705161-72705180 None:intergenic 30.0%
CACAAATAATCATCAACAAC+GGG - chr3_1:72705338-72705357 None:intergenic 30.0%
CAAGTTAGAATCAATTCTAG+AGG - chr3_1:72705398-72705417 None:intergenic 30.0%
! AATTGATTCTAACTTGAAGC+CGG + chr3_1:72705402-72705421 Msa0373640:intron 30.0%
! AAACTTAAAGCTCTAATGTC+CGG - chr3_1:72705424-72705443 None:intergenic 30.0%
AAGGTAAAGTCATTCATGTT+TGG - chr3_1:72705506-72705525 None:intergenic 30.0%
! ACCTTCAAGATAATTTTAGG+CGG + chr3_1:72705521-72705540 Msa0373640:intron 30.0%
! TTTGAGATATTCACAATCTC+AGG - chr3_1:72705623-72705642 None:intergenic 30.0%
ATACCAAGCAGTTAAATACA+TGG - chr3_1:72705680-72705699 None:intergenic 30.0%
GACTAAATTCATAATAAGCG+CGG - chr3_1:72705753-72705772 None:intergenic 30.0%
TCACATTGATGTTAGTCAAA+TGG - chr3_1:72705902-72705921 None:intergenic 30.0%
GAACTACGTGTATGAAAATA+CGG + chr3_1:72705942-72705961 Msa0373640:intron 30.0%
TGTGTGACCAACTATAATTA+TGG + chr3_1:72705965-72705984 Msa0373640:intron 30.0%
TCTCTTGCCATAATTATAGT+TGG - chr3_1:72705975-72705994 None:intergenic 30.0%
! AGAGACTTTTTGATAGACAA+CGG + chr3_1:72705990-72706009 Msa0373640:intron 30.0%
! TGAGCTCTTTTTAACCATTA+TGG + chr3_1:72706093-72706112 Msa0373640:intron 30.0%
AGAAATTAGAGTCTCCATAA+TGG - chr3_1:72706110-72706129 None:intergenic 30.0%
!!! ATGATGAGCATGTTTTTTCT+TGG + chr3_1:72706141-72706160 Msa0373640:intron 30.0%
TCAATTCAAATAGGATGAGA+AGG + chr3_1:72706217-72706236 Msa0373640:intron 30.0%
TCACTGAATTCATCTTCAAT+TGG - chr3_1:72706356-72706375 None:intergenic 30.0%
TTTAAACCTTATACCGCATT+AGG + chr3_1:72706522-72706541 Msa0373640:intron 30.0%
TTAAACCTTATACCGCATTA+GGG + chr3_1:72706523-72706542 Msa0373640:intron 30.0%
AAAAGTTACATGAACAACCA+GGG - chr3_1:72706582-72706601 None:intergenic 30.0%
! AATAATGGAAACTGTCTGTT+AGG + chr3_1:72706622-72706641 Msa0373640:intron 30.0%
TTTCTATTCCATTCAATTCC+CGG - chr3_1:72706651-72706670 None:intergenic 30.0%
!! AGAGTATTGTCTATTGTGAA+GGG - chr3_1:72706732-72706751 None:intergenic 30.0%
!! TAGAGTATTGTCTATTGTGA+AGG - chr3_1:72706733-72706752 None:intergenic 30.0%
!!! GTTTTTAGTTTATCTGGTGT+AGG - chr3_1:72707063-72707082 None:intergenic 30.0%
!!! GCTACAGTTTTTAGTTTATC+TGG - chr3_1:72707069-72707088 None:intergenic 30.0%
TGATGCAACATATTTGATAG+AGG + chr3_1:72707215-72707234 Msa0373640:three_prime_UTR 30.0%
TATGCACTGTAATGAATACA+TGG + chr3_1:72707250-72707269 Msa0373640:intron 30.0%
!!! ATTGTTTTTGTGCTAATACC+AGG + chr3_1:72707305-72707324 Msa0373640:intron 30.0%
!!! TTGTTTTTGTGCTAATACCA+GGG + chr3_1:72707306-72707325 Msa0373640:intron 30.0%
!! AAAGCTTTCTAAAGCTCATA+CGG - chr3_1:72707391-72707410 None:intergenic 30.0%
GCTGTTTGTAAATTGGTTAA+TGG + chr3_1:72707413-72707432 Msa0373640:three_prime_UTR 30.0%
TAATGGTGTGATTATAAAGG+TGG - chr3_1:72707524-72707543 None:intergenic 30.0%
GAGAGAGAGAATTCGATATA+GGG - chr3_1:72704649-72704668 None:intergenic 35.0%
AGAGAGAGAGAATTCGATAT+AGG - chr3_1:72704650-72704669 None:intergenic 35.0%
GTTGAAGCAAAGGGTAAAAA+AGG + chr3_1:72704901-72704920 Msa0373640:CDS 35.0%
!! TTCAATTTTGGGTAAAGGAG+GGG - chr3_1:72704959-72704978 None:intergenic 35.0%
!! CTTCAATTTTGGGTAAAGGA+GGG - chr3_1:72704960-72704979 None:intergenic 35.0%
!! TCTTCAATTTTGGGTAAAGG+AGG - chr3_1:72704961-72704980 None:intergenic 35.0%
!! TCGTCTTCAATTTTGGGTAA+AGG - chr3_1:72704964-72704983 None:intergenic 35.0%
TTACCCAAAATTGAAGACGA+CGG + chr3_1:72704964-72704983 Msa0373640:CDS 35.0%
! TTACCGTCGTCTTCAATTTT+GGG - chr3_1:72704970-72704989 None:intergenic 35.0%
! ATTACCGTCGTCTTCAATTT+TGG - chr3_1:72704971-72704990 None:intergenic 35.0%
TGGTACCACTGCTAAAATTA+TGG + chr3_1:72705059-72705078 Msa0373640:CDS 35.0%
!! AGCAACCATAATTTTAGCAG+TGG - chr3_1:72705067-72705086 None:intergenic 35.0%
TCCGCCTAAAATTATCTTGA+AGG - chr3_1:72705525-72705544 None:intergenic 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr3_1:72705855-72705874 None:intergenic 35.0%
AATTCGTCCCTGACTTTATA+GGG - chr3_1:72705867-72705886 None:intergenic 35.0%
AAATTCGTCCCTGACTTTAT+AGG - chr3_1:72705868-72705887 None:intergenic 35.0%
! TGTATGTTGGTTATGCATGT+TGG + chr3_1:72706167-72706186 Msa0373640:intron 35.0%
CTGCTTGCTTCAATTCAAAT+AGG + chr3_1:72706208-72706227 Msa0373640:intron 35.0%
GATTATGAATTGCAGGAGAA+TGG + chr3_1:72706405-72706424 Msa0373640:intron 35.0%
TTCTACCAGTGATGTTATTG+AGG + chr3_1:72706446-72706465 Msa0373640:CDS 35.0%
TATCACCTCAATAACATCAC+TGG - chr3_1:72706454-72706473 None:intergenic 35.0%
GAACATATATGTCCCTAATG+CGG - chr3_1:72706538-72706557 None:intergenic 35.0%
GAAAAGTTACATGAACAACC+AGG - chr3_1:72706583-72706602 None:intergenic 35.0%
TTCTATTCCATTCAATTCCC+GGG - chr3_1:72706650-72706669 None:intergenic 35.0%
! GAGTATTGTCTATTGTGAAG+GGG - chr3_1:72706731-72706750 None:intergenic 35.0%
AGCAAGTCTTTAAATAGCCT+TGG - chr3_1:72706797-72706816 None:intergenic 35.0%
!! TAGGTGGTTAGTTTGTTATG+TGG - chr3_1:72706834-72706853 None:intergenic 35.0%
TGTTATGATGGTTGTTTAGG+TGG - chr3_1:72706850-72706869 None:intergenic 35.0%
!!! AGACTTTTTCGGAGATGTAA+AGG + chr3_1:72707101-72707120 Msa0373640:CDS 35.0%
!! TAACGATGTTATTTCCCCAA+AGG - chr3_1:72707130-72707149 None:intergenic 35.0%
CACTGTAATGAATACATGGT+AGG + chr3_1:72707254-72707273 Msa0373640:intron 35.0%
ATAAGTTCATCCTTTAACCC+TGG - chr3_1:72707326-72707345 None:intergenic 35.0%
! TTGAATCGTTAAGTGCTGTT+TGG + chr3_1:72707363-72707382 Msa0373640:three_prime_UTR 35.0%
!! GCTTTGTGCTGTTTGTAAAT+TGG + chr3_1:72707406-72707425 Msa0373640:three_prime_UTR 35.0%
TGCAGGTATAAGAACAAAAC+AGG - chr3_1:72707466-72707485 None:intergenic 35.0%
TAAAATTATGTGTTGGGTGC+AGG - chr3_1:72707483-72707502 None:intergenic 35.0%
CTAACTCAGGTAACTGGATA+GGG - chr3_1:72704694-72704713 None:intergenic 40.0%
ACTAACTCAGGTAACTGGAT+AGG - chr3_1:72704695-72704714 None:intergenic 40.0%
TGGTAACTAACTCAGGTAAC+TGG - chr3_1:72704700-72704719 None:intergenic 40.0%
!! GTGATGATGGTAACTAACTC+AGG - chr3_1:72704707-72704726 None:intergenic 40.0%
TTGCTTCAACAACCAAGACA+TGG - chr3_1:72704891-72704910 None:intergenic 40.0%
TGTCTTGGTTGTTGAAGCAA+AGG + chr3_1:72704891-72704910 Msa0373640:CDS 40.0%
GTCTTGGTTGTTGAAGCAAA+GGG + chr3_1:72704892-72704911 Msa0373640:CDS 40.0%
!! TCAATTTTGGGTAAAGGAGG+GGG - chr3_1:72704958-72704977 None:intergenic 40.0%
CGAATGAAGACGACGAATTT+AGG - chr3_1:72704994-72705013 None:intergenic 40.0%
ATTCGTCGTCTTCATTCGTA+TGG + chr3_1:72704996-72705015 Msa0373640:CDS 40.0%
CCACCAGAAACAATACTAAG+AGG - chr3_1:72705042-72705061 None:intergenic 40.0%
!! CCTCTTAGTATTGTTTCTGG+TGG + chr3_1:72705039-72705058 Msa0373640:CDS 40.0%
AGTGGTATGATTCTCGCTTA+GGG - chr3_1:72705305-72705324 None:intergenic 40.0%
TAGTGGTATGATTCTCGCTT+AGG - chr3_1:72705306-72705325 None:intergenic 40.0%
AATCATCAACAACGGGCATT+TGG - chr3_1:72705331-72705350 None:intergenic 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr3_1:72705596-72705615 Msa0373640:intron 40.0%
GGTCCATGTATTTAACTGCT+TGG + chr3_1:72705674-72705693 Msa0373640:intron 40.0%
TTTGAGAGCCCTATAAAGTC+AGG + chr3_1:72705856-72705875 Msa0373640:intron 40.0%
TTGAGAGCCCTATAAAGTCA+GGG + chr3_1:72705857-72705876 Msa0373640:intron 40.0%
AAAGTCAGGGACGAATTTGA+TGG + chr3_1:72705870-72705889 Msa0373640:intron 40.0%
AAGCAGTGAGTAACAAAGAC+AGG - chr3_1:72706194-72706213 None:intergenic 40.0%
ACAACACCGTGTACTAAAGT+CGG + chr3_1:72706262-72706281 Msa0373640:CDS 40.0%
TCGGCTACTGAATTCAGATA+TGG + chr3_1:72706281-72706300 Msa0373640:CDS 40.0%
TATGTCCCTAATGCGGTATA+AGG - chr3_1:72706531-72706550 None:intergenic 40.0%
AGTACAACATAGAAGAACCC+TGG + chr3_1:72706562-72706581 Msa0373640:intron 40.0%
GAGATGTAAAGGAGTCCTTT+GGG + chr3_1:72707112-72707131 Msa0373640:CDS 40.0%
AGATGTAAAGGAGTCCTTTG+GGG + chr3_1:72707113-72707132 Msa0373640:CDS 40.0%
TGAATCTTCCTCTGACTCAT+CGG - chr3_1:72707163-72707182 None:intergenic 40.0%
TGTGCTAATACCAGGGTTAA+AGG + chr3_1:72707313-72707332 Msa0373640:intron 40.0%
TCTCGGAGTTGTTGTGATGA+TGG - chr3_1:72704720-72704739 None:intergenic 45.0%
CATGCGTTTCGAGATTCTCT+CGG - chr3_1:72704737-72704756 None:intergenic 45.0%
ATCTCGAAACGCATGGAAGT+AGG + chr3_1:72704742-72704761 Msa0373640:exon 45.0%
!! GAGCTTGAACTTGATAGTGG+TGG - chr3_1:72704793-72704812 None:intergenic 45.0%
CTGGAGCTTGAACTTGATAG+TGG - chr3_1:72704796-72704815 None:intergenic 45.0%
CACTATCAAGTTCAAGCTCC+AGG + chr3_1:72704794-72704813 Msa0373640:CDS 45.0%
TCTGGGGAATTGTCTTGGAA+TGG - chr3_1:72704842-72704861 None:intergenic 45.0%
!! TGAGTTCTGGGGAATTGTCT+TGG - chr3_1:72704847-72704866 None:intergenic 45.0%
! TGATGTTGGCGTTGAGTTCT+GGG - chr3_1:72704859-72704878 None:intergenic 45.0%
CTTCAACAACCAAGACATGG+TGG - chr3_1:72704888-72704907 None:intergenic 45.0%
GGCATTCCGAGAATTGAACT+CGG + chr3_1:72705268-72705287 Msa0373640:intron 45.0%
GCATTCCGAGAATTGAACTC+GGG + chr3_1:72705269-72705288 Msa0373640:intron 45.0%
AGTGCTTCACAGAGTCAACA+GGG - chr3_1:72705775-72705794 None:intergenic 45.0%
TAGTGCTTCACAGAGTCAAC+AGG - chr3_1:72705776-72705795 None:intergenic 45.0%
! CAGTAGCCGACTTTAGTACA+CGG - chr3_1:72706271-72706290 None:intergenic 45.0%
GAAACTGTCTGTTAGGAACC+CGG + chr3_1:72706629-72706648 Msa0373640:intron 45.0%
AAACTGTCTGTTAGGAACCC+GGG + chr3_1:72706630-72706649 Msa0373640:intron 45.0%
TTAGGAACCCGGGAATTGAA+TGG + chr3_1:72706640-72706659 Msa0373640:intron 45.0%
ATTGTGAAGGGGAAAACCCT+TGG - chr3_1:72706720-72706739 None:intergenic 45.0%
GGAGATGTAAAGGAGTCCTT+TGG + chr3_1:72707111-72707130 Msa0373640:CDS 45.0%
! GATACTTTTCAGAGAGAGCG+AGG + chr3_1:72707653-72707672 Msa0373640:three_prime_UTR 45.0%
!!! TAATATTTTTAAATTTCTAA+TGG + chr3_1:72707277-72707296 Msa0373640:intron 5.0%
CGAGAGAATCTCGAAACGCA+TGG + chr3_1:72704735-72704754 Msa0373640:exon 50.0%
TGGAGAAGAGTGAGTCGTTG+TGG - chr3_1:72704822-72704841 None:intergenic 50.0%
! GATGTTGGCGTTGAGTTCTG+GGG - chr3_1:72704858-72704877 None:intergenic 50.0%
! GTGATGTTGGCGTTGAGTTC+TGG - chr3_1:72704860-72704879 None:intergenic 50.0%
CAACAACCAAGACATGGTGG+TGG - chr3_1:72704885-72704904 None:intergenic 50.0%
!! ATTTTGGGTAAAGGAGGGGG+AGG - chr3_1:72704955-72704974 None:intergenic 50.0%
GAGGTCCCGAGTTCAATTCT+CGG - chr3_1:72705277-72705296 None:intergenic 50.0%
ACAACGGGCATTTGGTCTAG+TGG - chr3_1:72705323-72705342 None:intergenic 50.0%
AGGAGAGAATCTCCACTCCA+AGG + chr3_1:72706700-72706719 Msa0373640:intron 50.0%
GGAGAGAATCTCCACTCCAA+GGG + chr3_1:72706701-72706720 Msa0373640:intron 50.0%
TGGTGTAGGAAGCTGCAAGT+TGG - chr3_1:72707049-72707068 None:intergenic 50.0%
TACTGCTACCGATGAGTCAG+AGG + chr3_1:72707152-72707171 Msa0373640:CDS 50.0%
GAGTGAGTCGTTGTGGAACC+TGG - chr3_1:72704815-72704834 None:intergenic 55.0%
!! CATGGTGGTGGTGGTGATGT+TGG - chr3_1:72704873-72704892 None:intergenic 55.0%
TCACCACCACCACCATGTCT+TGG + chr3_1:72704876-72704895 Msa0373640:CDS 55.0%
!! CAACCAAGACATGGTGGTGG+TGG - chr3_1:72704882-72704901 None:intergenic 55.0%
ATTCTCGCTTAGGGTGCGAG+AGG - chr3_1:72705296-72705315 None:intergenic 55.0%
GAAGGGGAAAACCCTTGGAG+TGG - chr3_1:72706715-72706734 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72704622 72707783 72704622 ID=Msa0373640;Name=Msa0373640
chr3_1 mRNA 72704622 72707783 72704622 ID=Msa0373640-mRNA-1;Parent=Msa0373640;Name=Msa0373640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|0.75|0.6|5|493|228
chr3_1 exon 72704622 72705161 72704622 ID=Msa0373640-mRNA-1:exon:16370;Parent=Msa0373640-mRNA-1
chr3_1 exon 72706230 72706316 72706230 ID=Msa0373640-mRNA-1:exon:16371;Parent=Msa0373640-mRNA-1
chr3_1 exon 72706420 72706467 72706420 ID=Msa0373640-mRNA-1:exon:16372;Parent=Msa0373640-mRNA-1
chr3_1 exon 72707057 72707236 72707057 ID=Msa0373640-mRNA-1:exon:16373;Parent=Msa0373640-mRNA-1
chr3_1 exon 72707327 72707783 72707327 ID=Msa0373640-mRNA-1:exon:16374;Parent=Msa0373640-mRNA-1
chr3_1 five_prime_UTR 72704622 72704753 72704622 ID=Msa0373640-mRNA-1:five_prime_utr;Parent=Msa0373640-mRNA-1
chr3_1 CDS 72704754 72705161 72704754 ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1 CDS 72706230 72706316 72706230 ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1 CDS 72706420 72706467 72706420 ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1 CDS 72707057 72707200 72707057 ID=Msa0373640-mRNA-1:cds;Parent=Msa0373640-mRNA-1
chr3_1 three_prime_UTR 72707201 72707236 72707201 ID=Msa0373640-mRNA-1:three_prime_utr;Parent=Msa0373640-mRNA-1
chr3_1 three_prime_UTR 72707327 72707783 72707327 ID=Msa0373640-mRNA-1:three_prime_utr;Parent=Msa0373640-mRNA-1
Gene Sequence

>Msa0373640

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCCCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0373640

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*