AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375570 MtrunA17_Chr3g0145851 98.535 273 3 1 1 273 1 272 0.0 536
Msa1375570 MtrunA17_Chr6g0450631 43.478 207 111 6 59 263 49 251 3.40e-47 159
Msa1375570 MtrunA17_Chr1g0198561 41.546 207 115 6 59 263 49 251 1.04e-43 150
Msa1375570 MtrunA17_Chr2g0324401 49.091 55 28 0 209 263 9 63 8.06e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375570 AT2G43030.1 83.186 226 38 0 48 273 46 271 1.71e-131 373
Msa1375570 AT3G17465.1 33.571 280 164 5 10 272 16 290 1.76e-38 137

Find 91 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACAATCTTAAGCTTTC+TGG 0.097361 tig0019730:-7700 None:intergenic
AAAGAGACTAATTAATTCTT+TGG 0.209215 tig0019730:-7825 None:intergenic
AAAGCTCATCATTCCCAATT+TGG 0.228676 tig0019730:-7110 None:intergenic
CAAATTGACCAAACCTGAAA+TGG 0.282604 tig0019730:+7267 Msa1375570:CDS
CATTCCTATGCGCCATCTTC+AGG 0.308173 tig0019730:+7312 Msa1375570:CDS
TTTACAATAAATCATGTCTT+AGG 0.320590 tig0019730:+7991 Msa1375570:three_prime_UTR
GAAGGTATTGAAATGGAAAA+TGG 0.337920 tig0019730:-6941 None:intergenic
ATGATCAAAGGTGCTCTTCC+TGG 0.365904 tig0019730:+7747 Msa1375570:CDS
TTTCGTCTTCAATCCGTTGA+TGG 0.384156 tig0019730:+7337 Msa1375570:CDS
CATTTCTCAGTAGCTGAGAT+TGG 0.387976 tig0019730:+7951 Msa1375570:three_prime_UTR
TTTGACAATGAAGGGCTAAC+AGG 0.397586 tig0019730:-7880 None:intergenic
TCAAATACAAGGCGCTGATT+AGG 0.398930 tig0019730:-7367 None:intergenic
AAGATGACCCATTTCAGGTT+TGG 0.399688 tig0019730:-7275 None:intergenic
CTCTTGGAACCATGGCTCAT+TGG 0.403785 tig0019730:-7579 None:intergenic
TGGTGTGATGGGTACCAAAT+TGG 0.414953 tig0019730:+7096 Msa1375570:CDS
GTTGTTCCCGTCACTGTTGT+CGG 0.415769 tig0019730:+7151 Msa1375570:CDS
GGTGATCTTGTTGATGTCTC+TGG 0.428399 tig0019730:+7406 Msa1375570:CDS
ATTAGAAGAAGGTATTGAAA+TGG 0.434138 tig0019730:-6948 None:intergenic
AAGCTTTCTGGTCTTCCTGT+TGG 0.434373 tig0019730:-7688 None:intergenic
ACGCCGTCCAAGTTGGTTAC+CGG 0.438083 tig0019730:+7230 Msa1375570:CDS
TCCAAGTTGTCTGTGACTCT+TGG 0.442433 tig0019730:-7595 None:intergenic
TCCAAGAGTCACAGACAACT+TGG 0.460086 tig0019730:+7594 Msa1375570:CDS
TTCTTGCCAACAATCTTAGC+GGG 0.460342 tig0019730:-7798 None:intergenic
GAGTTACAGACAAGTAGTTA+AGG 0.460373 tig0019730:-7848 None:intergenic
ACTGTTGTCGGTTTCAAAGA+AGG 0.461503 tig0019730:+7163 Msa1375570:CDS
AGAGGCTGGTGTTGGTGTGA+TGG 0.463975 tig0019730:+7084 Msa1375570:CDS
TACACCTGGTCGCGTATACA+AGG 0.469173 tig0019730:+7635 Msa1375570:CDS
TTTCAGGTTTGGTCAATTTG+CGG 0.469193 tig0019730:-7264 None:intergenic
GTTGTAACCGTCGGTGGCGT+CGG 0.473671 tig0019730:-7209 None:intergenic
AAAGAAGATGCCTGGTAGGA+TGG 0.474224 tig0019730:+7659 Msa1375570:CDS
ATACATAAATTTGACAATGA+AGG 0.474290 tig0019730:-7889 None:intergenic
GAGGCTGGTGTTGGTGTGAT+GGG 0.474712 tig0019730:+7085 Msa1375570:CDS
TAACCCTCCGGTAACCAACT+TGG 0.478957 tig0019730:-7237 None:intergenic
CACAGACAACTTGGATCCAT+TGG 0.481197 tig0019730:+7603 Msa1375570:CDS
GAAGAAGAAGAATTAGAAGA+AGG 0.487678 tig0019730:-6959 None:intergenic
GTAGGATGGGTGGAACCAAC+AGG 0.493432 tig0019730:+7673 Msa1375570:CDS
TACGCGACCAGGTGTAGTTC+CGG 0.494636 tig0019730:-7628 None:intergenic
TTTCCCTTGTATACGCGACC+AGG 0.499382 tig0019730:-7639 None:intergenic
AGAAGATTACCAGGCTTACC+AGG 0.500896 tig0019730:-7765 None:intergenic
ACGGGAACAACTTCACCGTT+AGG 0.508452 tig0019730:-7139 None:intergenic
AAGAAGATGCCTGGTAGGAT+GGG 0.509948 tig0019730:+7660 Msa1375570:CDS
TATACTATTCTTAATTCCTA+AGG 0.511742 tig0019730:+7909 Msa1375570:three_prime_UTR
GGTGTGATGGGTACCAAATT+GGG 0.512034 tig0019730:+7097 Msa1375570:CDS
AAATTGACCAAACCTGAAAT+GGG 0.513032 tig0019730:+7268 Msa1375570:CDS
TTGAAACCGACAACAGTGAC+GGG 0.513527 tig0019730:-7157 None:intergenic
GGTGCTCTTCCTGGTAAGCC+TGG 0.514459 tig0019730:+7756 Msa1375570:CDS
TGAAATGGGTCATCTTGAAA+AGG 0.516033 tig0019730:+7282 Msa1375570:CDS
AAGCGTCATAACTTCAAAAG+AGG 0.517261 tig0019730:+7555 Msa1375570:CDS
AGGTGTAGTTCCGGCACCAA+TGG 0.518535 tig0019730:-7619 None:intergenic
TACATAAATTTGACAATGAA+GGG 0.518660 tig0019730:-7888 None:intergenic
TTGGTTCCACCCATCCTACC+AGG 0.519178 tig0019730:-7669 None:intergenic
GATGTCTCTGGCACCACCAT+CGG 0.522268 tig0019730:+7418 Msa1375570:CDS
GGTGGTGAAAATGAGCTTAG+AGG 0.522460 tig0019730:+7066 Msa1375570:CDS
CTGAAGATGGCGCATAGGAA+TGG 0.527595 tig0019730:-7311 None:intergenic
ATGGCGCATAGGAATGGCTC+CGG 0.528063 tig0019730:-7305 None:intergenic
GTAAGCCTGGTAATCTTCTA+CGG 0.530779 tig0019730:+7769 Msa1375570:CDS
GAACAACTTCACCGTTAGGT+TGG 0.533148 tig0019730:-7135 None:intergenic
CTCTGGCACCACCATCGGCA+AGG 0.534330 tig0019730:+7423 Msa1375570:CDS
TACAAGGGAAAGAAGATGCC+TGG 0.536322 tig0019730:+7651 Msa1375570:CDS
GTCTGTGACTCTTGGAACCA+TGG 0.543733 tig0019730:-7587 None:intergenic
ATGGGTCATCTTGAAAAGGC+CGG 0.565417 tig0019730:+7286 Msa1375570:CDS
CAACTTGGATCCATTGGTGC+CGG 0.569215 tig0019730:+7609 Msa1375570:CDS
ATTTGCGGTCTCTAACCCTC+CGG 0.569415 tig0019730:-7249 None:intergenic
ATTAGGTTCAAAACCATCAA+CGG 0.570807 tig0019730:-7350 None:intergenic
GAAGACGAAACTCCTGAAGA+TGG 0.571739 tig0019730:-7324 None:intergenic
TCTGGCACCACCATCGGCAA+GGG 0.572275 tig0019730:+7424 Msa1375570:CDS
CTTAATGTTATCATGATCAA+AGG 0.572918 tig0019730:+7735 Msa1375570:CDS
ATTGGTGCCGGAACTACACC+TGG 0.580799 tig0019730:+7621 Msa1375570:CDS
TTTGAAACCGACAACAGTGA+CGG 0.586413 tig0019730:-7158 None:intergenic
CCGTCCAAGTTGGTTACCGG+AGG 0.591201 tig0019730:+7233 Msa1375570:CDS
GTTCTTGCCAACAATCTTAG+CGG 0.594511 tig0019730:-7799 None:intergenic
AAGATGCCTGGTAGGATGGG+TGG 0.594546 tig0019730:+7663 Msa1375570:CDS
ACCTTGAAAACCCTTGCCGA+TGG 0.600155 tig0019730:-7434 None:intergenic
TGAAAAGCTCATCAAATACA+AGG 0.600821 tig0019730:-7378 None:intergenic
GCTATCCGTAGAAGATTACC+AGG 0.602366 tig0019730:-7774 None:intergenic
AGGGAAAGAAGATGCCTGGT+AGG 0.605040 tig0019730:+7655 Msa1375570:CDS
TTGAAAACCCTTGCCGATGG+TGG 0.607518 tig0019730:-7431 None:intergenic
ATCAAAACCGACGCCACCGA+CGG 0.609949 tig0019730:+7202 Msa1375570:CDS
GGTTACAACGCCGTCCAAGT+TGG 0.618166 tig0019730:+7223 Msa1375570:CDS
TATTGAAATGGAAAATGGTG+AGG 0.627513 tig0019730:-6936 None:intergenic
AACTCCTGAAGATGGCGCAT+AGG 0.631101 tig0019730:-7316 None:intergenic
GTGAAAATGAGCTTAGAGGC+TGG 0.634928 tig0019730:+7070 Msa1375570:CDS
TCTTGCCAACAATCTTAGCG+GGG 0.638407 tig0019730:-7797 None:intergenic
CCTCCGGTAACCAACTTGGA+CGG 0.639997 tig0019730:-7233 None:intergenic
ATGAGCTTAGAGGCTGGTGT+TGG 0.640133 tig0019730:+7076 Msa1375570:CDS
AAAAGAGGACCAATGAGCCA+TGG 0.640937 tig0019730:+7570 Msa1375570:CDS
CGTCCAAGTTGGTTACCGGA+GGG 0.643249 tig0019730:+7234 Msa1375570:CDS
CTTGCCAACAATCTTAGCGG+GGG 0.643846 tig0019730:-7796 None:intergenic
GACGGCGTTGTAACCGTCGG+TGG 0.648118 tig0019730:-7215 None:intergenic
TTGGACGGCGTTGTAACCGT+CGG 0.663802 tig0019730:-7218 None:intergenic
ACACCTGGTCGCGTATACAA+GGG 0.687415 tig0019730:+7636 Msa1375570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATCTTTCACTAA+TGG + tig0019730:7502-7521 Msa1375570:intron 15.0%
!! ATAATAATATCTTTCACTAA+TGG + tig0019730:7502-7521 Msa1375570:intron 15.0%
!! AAAGAGACTAATTAATTCTT+TGG - tig0019730:7828-7847 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - tig0019730:7891-7910 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - tig0019730:7892-7911 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + tig0019730:7909-7928 Msa1375570:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + tig0019730:7991-8010 Msa1375570:three_prime_UTR 20.0%
!! AAAGAGACTAATTAATTCTT+TGG - tig0019730:7828-7847 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - tig0019730:7891-7910 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - tig0019730:7892-7911 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + tig0019730:7909-7928 Msa1375570:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + tig0019730:7991-8010 Msa1375570:three_prime_UTR 20.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - tig0019730:6951-6970 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - tig0019730:6996-7015 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - tig0019730:7703-7722 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + tig0019730:7735-7754 Msa1375570:CDS 25.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - tig0019730:6951-6970 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - tig0019730:6996-7015 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - tig0019730:7703-7722 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + tig0019730:7735-7754 Msa1375570:CDS 25.0%
TATTGAAATGGAAAATGGTG+AGG - tig0019730:6939-6958 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - tig0019730:6944-6963 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - tig0019730:6962-6981 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + tig0019730:7268-7287 Msa1375570:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - tig0019730:7353-7372 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - tig0019730:7381-7400 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + tig0019730:7385-7404 Msa1375570:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - tig0019730:7485-7504 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - tig0019730:7486-7505 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + tig0019730:7525-7544 Msa1375570:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - tig0019730:7928-7947 None:intergenic 30.0%
TATTGAAATGGAAAATGGTG+AGG - tig0019730:6939-6958 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - tig0019730:6944-6963 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - tig0019730:6962-6981 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + tig0019730:7268-7287 Msa1375570:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - tig0019730:7353-7372 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - tig0019730:7381-7400 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + tig0019730:7385-7404 Msa1375570:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - tig0019730:7485-7504 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - tig0019730:7486-7505 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + tig0019730:7525-7544 Msa1375570:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - tig0019730:7928-7947 None:intergenic 30.0%
AAAGCTCATCATTCCCAATT+TGG - tig0019730:7113-7132 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + tig0019730:7124-7143 Msa1375570:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - tig0019730:7267-7286 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + tig0019730:7267-7286 Msa1375570:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - tig0019730:7283-7302 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + tig0019730:7282-7301 Msa1375570:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + tig0019730:7528-7547 Msa1375570:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + tig0019730:7555-7574 Msa1375570:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - tig0019730:7851-7870 None:intergenic 35.0%
AAAGCTCATCATTCCCAATT+TGG - tig0019730:7113-7132 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + tig0019730:7124-7143 Msa1375570:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - tig0019730:7267-7286 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + tig0019730:7267-7286 Msa1375570:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - tig0019730:7283-7302 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + tig0019730:7282-7301 Msa1375570:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + tig0019730:7528-7547 Msa1375570:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + tig0019730:7555-7574 Msa1375570:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - tig0019730:7851-7870 None:intergenic 35.0%
! TTTGAAACCGACAACAGTGA+CGG - tig0019730:7161-7180 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + tig0019730:7163-7182 Msa1375570:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - tig0019730:7278-7297 None:intergenic 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + tig0019730:7337-7356 Msa1375570:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - tig0019730:7370-7389 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - tig0019730:7472-7491 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - tig0019730:7473-7492 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + tig0019730:7769-7788 Msa1375570:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - tig0019730:7801-7820 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - tig0019730:7802-7821 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - tig0019730:7883-7902 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + tig0019730:7951-7970 Msa1375570:three_prime_UTR 40.0%
GAATGAAACACAACACCAAC+TGG - tig0019730:6856-6875 None:intergenic 40.0%
! TTTGAAACCGACAACAGTGA+CGG - tig0019730:7161-7180 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + tig0019730:7163-7182 Msa1375570:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - tig0019730:7278-7297 None:intergenic 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + tig0019730:7337-7356 Msa1375570:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - tig0019730:7370-7389 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - tig0019730:7472-7491 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - tig0019730:7473-7492 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + tig0019730:7769-7788 Msa1375570:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - tig0019730:7801-7820 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - tig0019730:7802-7821 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - tig0019730:7883-7902 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + tig0019730:7951-7970 Msa1375570:three_prime_UTR 40.0%
CAGCAGCAGCAAAGAAAAAG+AGG + tig0019730:7034-7053 Msa1375570:CDS 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG + tig0019730:7037-7056 Msa1375570:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + tig0019730:7045-7064 Msa1375570:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + tig0019730:7066-7085 Msa1375570:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + tig0019730:7070-7089 Msa1375570:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + tig0019730:7096-7115 Msa1375570:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + tig0019730:7097-7116 Msa1375570:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - tig0019730:7138-7157 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - tig0019730:7160-7179 None:intergenic 45.0%
ATGGGTCATCTTGAAAAGGC+CGG + tig0019730:7286-7305 Msa1375570:CDS 45.0%
GAAGACGAAACTCCTGAAGA+TGG - tig0019730:7327-7346 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + tig0019730:7406-7425 Msa1375570:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + tig0019730:7570-7589 Msa1375570:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + tig0019730:7594-7613 Msa1375570:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - tig0019730:7598-7617 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + tig0019730:7603-7622 Msa1375570:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + tig0019730:7651-7670 Msa1375570:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + tig0019730:7659-7678 Msa1375570:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + tig0019730:7660-7679 Msa1375570:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - tig0019730:7691-7710 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + tig0019730:7747-7766 Msa1375570:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - tig0019730:7768-7787 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - tig0019730:7777-7796 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - tig0019730:7800-7819 None:intergenic 45.0%
CAGCAGCAGCAAAGAAAAAG+AGG + tig0019730:7034-7053 Msa1375570:CDS 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG + tig0019730:7037-7056 Msa1375570:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + tig0019730:7045-7064 Msa1375570:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + tig0019730:7066-7085 Msa1375570:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + tig0019730:7070-7089 Msa1375570:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + tig0019730:7096-7115 Msa1375570:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + tig0019730:7097-7116 Msa1375570:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - tig0019730:7138-7157 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - tig0019730:7160-7179 None:intergenic 45.0%
ATGGGTCATCTTGAAAAGGC+CGG + tig0019730:7286-7305 Msa1375570:CDS 45.0%
GAAGACGAAACTCCTGAAGA+TGG - tig0019730:7327-7346 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + tig0019730:7406-7425 Msa1375570:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + tig0019730:7570-7589 Msa1375570:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + tig0019730:7594-7613 Msa1375570:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - tig0019730:7598-7617 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + tig0019730:7603-7622 Msa1375570:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + tig0019730:7651-7670 Msa1375570:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + tig0019730:7659-7678 Msa1375570:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + tig0019730:7660-7679 Msa1375570:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - tig0019730:7691-7710 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + tig0019730:7747-7766 Msa1375570:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - tig0019730:7768-7787 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - tig0019730:7777-7796 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - tig0019730:7800-7819 None:intergenic 45.0%
AAAAAGAGGAGGAGCGATGG+TGG + tig0019730:7048-7067 Msa1375570:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + tig0019730:7076-7095 Msa1375570:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - tig0019730:7142-7161 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + tig0019730:7151-7170 Msa1375570:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - tig0019730:7240-7259 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - tig0019730:7252-7271 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - tig0019730:7314-7333 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + tig0019730:7312-7331 Msa1375570:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - tig0019730:7319-7338 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - tig0019730:7434-7453 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + tig0019730:7433-7452 Msa1375570:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - tig0019730:7437-7456 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - tig0019730:7582-7601 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - tig0019730:7590-7609 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + tig0019730:7609-7628 Msa1375570:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + tig0019730:7635-7654 Msa1375570:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + tig0019730:7636-7655 Msa1375570:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - tig0019730:7642-7661 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + tig0019730:7655-7674 Msa1375570:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + tig0019730:7792-7811 Msa1375570:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - tig0019730:7799-7818 None:intergenic 50.0%
AAAAAGAGGAGGAGCGATGG+TGG + tig0019730:7048-7067 Msa1375570:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + tig0019730:7076-7095 Msa1375570:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - tig0019730:7142-7161 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + tig0019730:7151-7170 Msa1375570:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - tig0019730:7240-7259 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - tig0019730:7252-7271 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - tig0019730:7314-7333 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + tig0019730:7312-7331 Msa1375570:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - tig0019730:7319-7338 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - tig0019730:7434-7453 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + tig0019730:7433-7452 Msa1375570:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - tig0019730:7437-7456 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - tig0019730:7582-7601 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - tig0019730:7590-7609 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + tig0019730:7609-7628 Msa1375570:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + tig0019730:7635-7654 Msa1375570:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + tig0019730:7636-7655 Msa1375570:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - tig0019730:7642-7661 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + tig0019730:7655-7674 Msa1375570:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + tig0019730:7792-7811 Msa1375570:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - tig0019730:7799-7818 None:intergenic 50.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + tig0019730:7084-7103 Msa1375570:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + tig0019730:7085-7104 Msa1375570:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + tig0019730:7202-7221 Msa1375570:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - tig0019730:7221-7240 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + tig0019730:7223-7242 Msa1375570:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + tig0019730:7230-7249 Msa1375570:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - tig0019730:7236-7255 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + tig0019730:7234-7253 Msa1375570:CDS 55.0%
ATGGCGCATAGGAATGGCTC+CGG - tig0019730:7308-7327 None:intergenic 55.0%
GATGTCTCTGGCACCACCAT+CGG + tig0019730:7418-7437 Msa1375570:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - tig0019730:7622-7641 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + tig0019730:7621-7640 Msa1375570:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - tig0019730:7631-7650 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + tig0019730:7663-7682 Msa1375570:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - tig0019730:7672-7691 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + tig0019730:7673-7692 Msa1375570:CDS 55.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + tig0019730:7084-7103 Msa1375570:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + tig0019730:7085-7104 Msa1375570:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + tig0019730:7202-7221 Msa1375570:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - tig0019730:7221-7240 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + tig0019730:7223-7242 Msa1375570:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + tig0019730:7230-7249 Msa1375570:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - tig0019730:7236-7255 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + tig0019730:7234-7253 Msa1375570:CDS 55.0%
ATGGCGCATAGGAATGGCTC+CGG - tig0019730:7308-7327 None:intergenic 55.0%
GATGTCTCTGGCACCACCAT+CGG + tig0019730:7418-7437 Msa1375570:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - tig0019730:7622-7641 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + tig0019730:7621-7640 Msa1375570:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - tig0019730:7631-7650 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + tig0019730:7663-7682 Msa1375570:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - tig0019730:7672-7691 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + tig0019730:7673-7692 Msa1375570:CDS 55.0%
GTTGTAACCGTCGGTGGCGT+CGG - tig0019730:7212-7231 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + tig0019730:7233-7252 Msa1375570:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + tig0019730:7424-7443 Msa1375570:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + tig0019730:7756-7775 Msa1375570:CDS 60.0%
GTTGTAACCGTCGGTGGCGT+CGG - tig0019730:7212-7231 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + tig0019730:7233-7252 Msa1375570:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + tig0019730:7424-7443 Msa1375570:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + tig0019730:7756-7775 Msa1375570:CDS 60.0%
GACGGCGTTGTAACCGTCGG+TGG - tig0019730:7218-7237 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + tig0019730:7423-7442 Msa1375570:CDS 65.0%
GACGGCGTTGTAACCGTCGG+TGG - tig0019730:7218-7237 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + tig0019730:7423-7442 Msa1375570:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019730 gene 6856 8031 6856 ID=Msa1375570;Name=Msa1375570
tig0019730 mRNA 6856 8031 6856 ID=Msa1375570-mRNA-1;Parent=Msa1375570;Name=Msa1375570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|195|273
tig0019730 exon 6856 7454 6856 ID=Msa1375570-mRNA-1:exon:4585;Parent=Msa1375570-mRNA-1
tig0019730 exon 7547 8031 7547 ID=Msa1375570-mRNA-1:exon:4586;Parent=Msa1375570-mRNA-1
tig0019730 five_prime_UTR 6856 6922 6856 ID=Msa1375570-mRNA-1:five_prime_utr;Parent=Msa1375570-mRNA-1
tig0019730 CDS 6923 7454 6923 ID=Msa1375570-mRNA-1:cds;Parent=Msa1375570-mRNA-1
tig0019730 CDS 7547 7836 7547 ID=Msa1375570-mRNA-1:cds;Parent=Msa1375570-mRNA-1
tig0019730 three_prime_UTR 7837 8031 7837 ID=Msa1375570-mRNA-1:three_prime_utr;Parent=Msa1375570-mRNA-1
Gene Sequence

>Msa1375570

ATGTCTATCATTTCCTCACCATTTTCCATTTCAATACCTTCTTCTAATTCTTCTTCTTCTTCTTCACTTTCCTTTTCAACTTCTTTTTCTACTCAATTTGTGAAATTGCAGCAGCAGCAGCAAAGAAAAAGAGGAGGAGCGATGGTGGTGAAAATGAGCTTAGAGGCTGGTGTTGGTGTGATGGGTACCAAATTGGGAATGATGAGCTTTTTCCAACCTAACGGTGAAGTTGTTCCCGTCACTGTTGTCGGTTTCAAAGAAGGCAACATCGTCACTCAAATCAAAACCGACGCCACCGACGGTTACAACGCCGTCCAAGTTGGTTACCGGAGGGTTAGAGACCGCAAATTGACCAAACCTGAAATGGGTCATCTTGAAAAGGCCGGAGCCATTCCTATGCGCCATCTTCAGGAGTTTCGTCTTCAATCCGTTGATGGTTTTGAACCTAATCAGCGCCTTGTATTTGATGAGCTTTTCAATGAAGGTGATCTTGTTGATGTCTCTGGCACCACCATCGGCAAGGGTTTTCAAGGTGGTATCAAGCGTCATAACTTCAAAAGAGGACCAATGAGCCATGGTTCCAAGAGTCACAGACAACTTGGATCCATTGGTGCCGGAACTACACCTGGTCGCGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGTGGAACCAACAGGAAGACCAGAAAGCTTAAGATTGTTAAAATTGATAAAGATCTTAATGTTATCATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGTAATCTTCTACGGATAGCCCCCGCTAAGATTGTTGGCAAGAACATTCCAAAGAATTAA

Protein sequence

>Msa1375570

MSIISSPFSISIPSSNSSSSSSLSFSTSFSTQFVKLQQQQQRKRGGAMVVKMSLEAGVGVMGTKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHLEKAGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN*