AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319340 MtrunA17_Chr2g0294021 91.864 295 21 2 1 293 1 294 4.92e-166 462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319340 AT3G17170.1 69.767 172 52 0 73 244 59 230 2.21e-88 266

Find 62 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACTCGTTGATATATT+TGG 0.137864 2_4:-18918499 None:intergenic
TGAATCTGTTCTTCTTAAAA+AGG 0.188788 2_4:+18916249 Msa0319340:CDS
CAGTTTCCACGTCAAGCTTT+AGG 0.189454 2_4:-18917292 None:intergenic
CTTGTTTCTTATCTTTCTTC+CGG 0.253687 2_4:-18916177 None:intergenic
TCTTCATTTCCTCTTAACTA+TGG 0.281522 2_4:+18915964 Msa0319340:exon
TTGTTTCTTATCTTTCTTCC+GGG 0.296250 2_4:-18916176 None:intergenic
CATTATAGACGATGATGATT+TGG 0.314854 2_4:+18918728 Msa0319340:CDS
AGTTTCCACGTCAAGCTTTA+GGG 0.316767 2_4:-18917291 None:intergenic
ATGAAGAAAGGTGGTGATTT+GGG 0.316780 2_4:-18916081 None:intergenic
TAAAGCAGTTCTGAACATTA+TGG 0.317951 2_4:+18918872 Msa0319340:three_prime_UTR
CCAGTGCTTTCATCTGATTT+AGG 0.330990 2_4:-18916217 None:intergenic
GGGAGAAGAAAGGAAGAGTA+TGG 0.343212 2_4:+18918385 Msa0319340:CDS
GATGAAGAAAGGTGGTGATT+TGG 0.361790 2_4:-18916082 None:intergenic
GCTTGACGTGGAAACTGATA+TGG 0.365705 2_4:+18917298 Msa0319340:CDS
CAACGAGTTCAAGACTTTGT+TGG 0.383716 2_4:+18918509 Msa0319340:CDS
GGAAGATGGTAAACTTCTTC+CGG 0.390554 2_4:+18917119 Msa0319340:CDS
CTTCGTCCCTCTTTATCACT+AGG 0.396913 2_4:-18918557 None:intergenic
AATTGAGAATGTAGGTAGAT+AGG 0.403197 2_4:+18918791 Msa0319340:three_prime_UTR
AGTATGGAGATTCAGTGATT+GGG 0.412799 2_4:+18918401 Msa0319340:CDS
GAGTATGGAGATTCAGTGAT+TGG 0.428387 2_4:+18918400 Msa0319340:CDS
CAGAAGACAGTTGAGGAAGA+TGG 0.433743 2_4:+18917105 Msa0319340:intron
GCTGTTAATGAGAAAGTTCA+AGG 0.436751 2_4:+18917873 Msa0319340:CDS
CACAGATGATGAAGAAGAAT+GGG 0.451353 2_4:+18918632 Msa0319340:CDS
GATGATATTGAGGGCGGTGA+TGG 0.471829 2_4:+18918699 Msa0319340:CDS
AAGAAGAATGGGATGATGAA+TGG 0.476855 2_4:+18918643 Msa0319340:CDS
GTATTAAACTCGGGAGGAGG+AGG 0.481879 2_4:-18918597 None:intergenic
GCACAGATGATGAAGAAGAA+TGG 0.500429 2_4:+18918631 Msa0319340:CDS
TTGGGAAATTGAAACGAAGA+GGG 0.517595 2_4:-18916063 None:intergenic
GTTTGATGCTAACATGGTAG+TGG 0.521071 2_4:-18916041 None:intergenic
ATCTGATTATGATGATATTG+AGG 0.526841 2_4:+18918689 Msa0319340:CDS
TTCGACACCTAGTGATAAAG+AGG 0.527803 2_4:+18918550 Msa0319340:CDS
ATAGTGCCTCCATAGTTAAG+AGG 0.528621 2_4:-18915973 None:intergenic
AGAAGAATGGGATGATGAAT+GGG 0.530879 2_4:+18918644 Msa0319340:CDS
GATGATGAAGATGAGGAAGA+TGG 0.536094 2_4:+18918666 Msa0319340:CDS
TCTCACTCATTATGAATGCC+CGG 0.540971 2_4:+18916158 Msa0319340:CDS
TCATCATCATCTTCAAACTC+CGG 0.543493 2_4:-18917138 None:intergenic
TCATGAGAAACATGCAGAAG+AGG 0.554875 2_4:+18917845 Msa0319340:CDS
ACGATGATGAGGATGAAGAA+AGG 0.560044 2_4:-18916093 None:intergenic
GTATGGAGATTCAGTGATTG+GGG 0.567959 2_4:+18918402 Msa0319340:CDS
AAAGTATTAAACTCGGGAGG+AGG 0.569590 2_4:-18918600 None:intergenic
ACTATGGAGGCACTATTCAA+AGG 0.569896 2_4:+18915980 Msa0319340:exon
TCATTTCCTCTTAACTATGG+AGG 0.570801 2_4:+18915967 Msa0319340:exon
TCTGATTATGATGATATTGA+GGG 0.573289 2_4:+18918690 Msa0319340:CDS
AGCAACAAAAGTATTAAACT+CGG 0.581584 2_4:-18918607 None:intergenic
TGATTGGGGTATGAGAAAGT+TGG 0.581664 2_4:+18918416 Msa0319340:CDS
TCAAGTAAACAATCTCATAG+TGG 0.585631 2_4:-18917821 None:intergenic
CCTAAATCAGATGAAAGCAC+TGG 0.590334 2_4:+18916217 Msa0319340:CDS
GGATTGAGAATTGAGAATGT+AGG 0.592175 2_4:+18918783 Msa0319340:three_prime_UTR
GGCCAGAAAATAGCATAATG+AGG 0.595713 2_4:+18918762 Msa0319340:exon
AAGAGGGTTTGATGCTAACA+TGG 0.608938 2_4:-18916047 None:intergenic
GCAACAAAAGTATTAAACTC+GGG 0.611767 2_4:-18918606 None:intergenic
TTTGGGAAATTGAAACGAAG+AGG 0.612809 2_4:-18916064 None:intergenic
TGATGATTTGGAAATATCAG+AGG 0.612887 2_4:+18918740 Msa0319340:CDS
TATTAAACTCGGGAGGAGGA+GGG 0.622797 2_4:-18918596 None:intergenic
TGAATGGGATGATGAAGATG+AGG 0.638287 2_4:+18918659 Msa0319340:CDS
GATGATTTGGAAATATCAGA+GGG 0.644533 2_4:+18918741 Msa0319340:CDS
TTGGCGTGAAAACGATGATG+AGG 0.663808 2_4:-18916104 None:intergenic
TGAATCCCTAAAGCTTGACG+TGG 0.671676 2_4:+18917286 Msa0319340:CDS
ACAAAAGTATTAAACTCGGG+AGG 0.675886 2_4:-18918603 None:intergenic
TCGACACCTAGTGATAAAGA+GGG 0.685347 2_4:+18918551 Msa0319340:CDS
ATGATGAGGATGAAGAAAGG+TGG 0.696138 2_4:-18916090 None:intergenic
GATTATGATGATATTGAGGG+CGG 0.728969 2_4:+18918693 Msa0319340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr2_4:18918898-18918917 Msa0319340:intron 0.0%
!! ATAAACAAAAATCAAATAAA+GGG - chr2_4:18916293-18916312 None:intergenic 10.0%
!! AATAAACAAAAATCAAATAA+AGG - chr2_4:18916294-18916313 None:intergenic 10.0%
!! TTGAATTTATACTTATATAT+TGG + chr2_4:18916387-18916406 Msa0319340:intron 10.0%
!! CAAATAAAAAAAATTATTAG+AGG - chr2_4:18917696-18917715 None:intergenic 10.0%
!! AATTCAATAAATCTTCAAAA+GGG - chr2_4:18916374-18916393 None:intergenic 15.0%
!! AAATTCAATAAATCTTCAAA+AGG - chr2_4:18916375-18916394 None:intergenic 15.0%
!!! AAAATGAAAATTTGGAATAA+GGG - chr2_4:18917249-18917268 None:intergenic 15.0%
!!! TCAAGTTAAAATGATTTTTT+TGG - chr2_4:18918283-18918302 None:intergenic 15.0%
!! ATTCTAATGAATCTTCAAAA+GGG - chr2_4:18916509-18916528 None:intergenic 20.0%
!! AATTCTAATGAATCTTCAAA+AGG - chr2_4:18916510-18916529 None:intergenic 20.0%
!! TTTCTCATTGATATTCAATA+TGG + chr2_4:18916991-18917010 Msa0319340:intron 20.0%
!! TTCTCATTGATATTCAATAT+GGG + chr2_4:18916992-18917011 Msa0319340:intron 20.0%
!! TGAGAAAATTCATATCATAA+AGG - chr2_4:18917050-18917069 None:intergenic 20.0%
!! TTTCTCATTGATATTCAATT+TGG + chr2_4:18917063-18917082 Msa0319340:intron 20.0%
!! TTCTCATTGATATTCAATTT+GGG + chr2_4:18917064-18917083 Msa0319340:intron 20.0%
!!! TCTGTTTGTTTTTGTTTTTT+TGG + chr2_4:18917186-18917205 Msa0319340:intron 20.0%
!!! GAAAATGAAAATTTGGAATA+AGG - chr2_4:18917250-18917269 None:intergenic 20.0%
!!! TTGATGCAATTTTTATTCAT+AGG + chr2_4:18917383-18917402 Msa0319340:intron 20.0%
!! TACTCTTTATTGTATATGTA+TGG + chr2_4:18917417-18917436 Msa0319340:intron 20.0%
!! TTTGTAAACATTATCTAACA+AGG - chr2_4:18917494-18917513 None:intergenic 20.0%
!! ATAGATTCGAAAAAAATGTA+AGG - chr2_4:18917923-18917942 None:intergenic 20.0%
!! ATGTCACTATTGTTAAATAT+AGG + chr2_4:18918004-18918023 Msa0319340:intron 20.0%
!! AATACAGAACAATAATGATT+TGG - chr2_4:18918059-18918078 None:intergenic 20.0%
!! TAAAAAAGAACCAGAATAAT+CGG - chr2_4:18918331-18918350 None:intergenic 20.0%
!! CTTTATATTCTAACGAAAAA+AGG - chr2_4:18918857-18918876 None:intergenic 20.0%
!!! GGTTATTTTGAAGAGAAAAT+TGG - chr2_4:18916126-18916145 None:intergenic 25.0%
!!! TTTTAAGAAGAACAGATTCA+GGG - chr2_4:18916249-18916268 None:intergenic 25.0%
!!! TTTTTAAGAAGAACAGATTC+AGG - chr2_4:18916250-18916269 None:intergenic 25.0%
! TGAATCTGTTCTTCTTAAAA+AGG + chr2_4:18916249-18916268 Msa0319340:CDS 25.0%
! GTATACCAAAACAAATTTGA+GGG - chr2_4:18916427-18916446 None:intergenic 25.0%
! AGTATACCAAAACAAATTTG+AGG - chr2_4:18916428-18916447 None:intergenic 25.0%
!!! TTACTACTAAGGAGTTTTTT+TGG + chr2_4:18916543-18916562 Msa0319340:intron 25.0%
!! AATCTTATCTTGTTCTGTTT+TGG + chr2_4:18916588-18916607 Msa0319340:intron 25.0%
! TAAACATTATCTAACAAGGT+CGG - chr2_4:18917490-18917509 None:intergenic 25.0%
! ATTATCGTCATTATGGTTTA+GGG - chr2_4:18917525-18917544 None:intergenic 25.0%
! ACTAATGAACTCATTCTATT+TGG - chr2_4:18917962-18917981 None:intergenic 25.0%
!!! AGCAACAAAAGTATTAAACT+CGG - chr2_4:18918610-18918629 None:intergenic 25.0%
! ATCTGATTATGATGATATTG+AGG + chr2_4:18918689-18918708 Msa0319340:CDS 25.0%
! TCTGATTATGATGATATTGA+GGG + chr2_4:18918690-18918709 Msa0319340:CDS 25.0%
TCTTCATTTCCTCTTAACTA+TGG + chr2_4:18915964-18915983 Msa0319340:exon 30.0%
! ATGAGTGAGAATGATTTTCT+GGG - chr2_4:18916148-18916167 None:intergenic 30.0%
! AATGAGTGAGAATGATTTTC+TGG - chr2_4:18916149-18916168 None:intergenic 30.0%
! TTGTTTCTTATCTTTCTTCC+GGG - chr2_4:18916179-18916198 None:intergenic 30.0%
! CTTGTTTCTTATCTTTCTTC+CGG - chr2_4:18916180-18916199 None:intergenic 30.0%
!! CAATACCCTCAAATTTGTTT+TGG + chr2_4:18916419-18916438 Msa0319340:intron 30.0%
TAATTTCTGCTAGTTGTCAT+TGG + chr2_4:18916463-18916482 Msa0319340:intron 30.0%
CACTTGTAATGTTACTACTA+AGG + chr2_4:18916532-18916551 Msa0319340:intron 30.0%
!!! TTGTTCTGTTTTGGTTAGAA+GGG + chr2_4:18916597-18916616 Msa0319340:intron 30.0%
GGGAGAGTAATTCATTATTT+AGG + chr2_4:18916617-18916636 Msa0319340:intron 30.0%
GTAATTCATTATTTAGGCGA+AGG + chr2_4:18916623-18916642 Msa0319340:intron 30.0%
TCTAATGTCAAATGCTATGA+AGG - chr2_4:18916865-18916884 None:intergenic 30.0%
! ATTTGACATTAGAGAAGTGT+AGG + chr2_4:18916872-18916891 Msa0319340:intron 30.0%
! TTTGGTAGTCTAAATAGTTC+TGG + chr2_4:18917204-18917223 Msa0319340:intron 30.0%
CTGGATTAATGTTATGACTT+TGG + chr2_4:18917223-18917242 Msa0319340:intron 30.0%
CCTGTACGAAAATGAAAATT+TGG - chr2_4:18917257-18917276 None:intergenic 30.0%
! CCAAATTTTCATTTTCGTAC+AGG + chr2_4:18917254-18917273 Msa0319340:intron 30.0%
CAGTAACATGACAAACTATT+TGG + chr2_4:18917460-18917479 Msa0319340:intron 30.0%
GATTATCGTCATTATGGTTT+AGG - chr2_4:18917526-18917545 None:intergenic 30.0%
CATCTAGATTATCGTCATTA+TGG - chr2_4:18917532-18917551 None:intergenic 30.0%
! ATCCATCTTTTGCTAACTTT+TGG + chr2_4:18917612-18917631 Msa0319340:intron 30.0%
CACGTTACTGAATCTTTAAA+GGG - chr2_4:18917760-18917779 None:intergenic 30.0%
TCAAGTAAACAATCTCATAG+TGG - chr2_4:18917824-18917843 None:intergenic 30.0%
GGTTAATTGCAATCTTTGAA+AGG - chr2_4:18917902-18917921 None:intergenic 30.0%
TTCTTTAATAACCTTTGCTG+TGG + chr2_4:18918192-18918211 Msa0319340:intron 30.0%
AATAATTGTATCCACAGCAA+AGG - chr2_4:18918206-18918225 None:intergenic 30.0%
AAACATACTTCCGATTATTC+TGG + chr2_4:18918318-18918337 Msa0319340:intron 30.0%
! AAACATTTGCAGACTTTTTG+AGG + chr2_4:18918364-18918383 Msa0319340:intron 30.0%
! AACATTTGCAGACTTTTTGA+GGG + chr2_4:18918365-18918384 Msa0319340:intron 30.0%
CTTGAACTCGTTGATATATT+TGG - chr2_4:18918502-18918521 None:intergenic 30.0%
!! GCAACAAAAGTATTAAACTC+GGG - chr2_4:18918609-18918628 None:intergenic 30.0%
CATTATAGACGATGATGATT+TGG + chr2_4:18918728-18918747 Msa0319340:CDS 30.0%
! TGATGATTTGGAAATATCAG+AGG + chr2_4:18918740-18918759 Msa0319340:CDS 30.0%
! GATGATTTGGAAATATCAGA+GGG + chr2_4:18918741-18918760 Msa0319340:CDS 30.0%
!!! ATCCTCATTATGCTATTTTC+TGG - chr2_4:18918767-18918786 None:intergenic 30.0%
AATTGAGAATGTAGGTAGAT+AGG + chr2_4:18918791-18918810 Msa0319340:three_prime_UTR 30.0%
!! TAAAGCAGTTCTGAACATTA+TGG + chr2_4:18918872-18918891 Msa0319340:three_prime_UTR 30.0%
TCATTTCCTCTTAACTATGG+AGG + chr2_4:18915967-18915986 Msa0319340:exon 35.0%
!! GTTTTTGGAGGTTTAGAAGA+AGG - chr2_4:18916022-18916041 None:intergenic 35.0%
TTGGGAAATTGAAACGAAGA+GGG - chr2_4:18916066-18916085 None:intergenic 35.0%
TTTGGGAAATTGAAACGAAG+AGG - chr2_4:18916067-18916086 None:intergenic 35.0%
ATGAAGAAAGGTGGTGATTT+GGG - chr2_4:18916084-18916103 None:intergenic 35.0%
! TGAGTGAGAATGATTTTCTG+GGG - chr2_4:18916147-18916166 None:intergenic 35.0%
!!! CTTGTTCTGTTTTGGTTAGA+AGG + chr2_4:18916596-18916615 Msa0319340:intron 35.0%
! ACACAAATTTGCCCATTTTG+TGG + chr2_4:18916650-18916669 Msa0319340:intron 35.0%
CAAGTCATACACCACAAAAT+GGG - chr2_4:18916664-18916683 None:intergenic 35.0%
ACAAGTCATACACCACAAAA+TGG - chr2_4:18916665-18916684 None:intergenic 35.0%
TGTAATCATAGCTGTTGTGT+TGG + chr2_4:18916776-18916795 Msa0319340:intron 35.0%
! CTAAATTTTGCATACAAGCG+AGG - chr2_4:18916932-18916951 None:intergenic 35.0%
! TCATTTTCAGAAGACAGTTG+AGG + chr2_4:18917098-18917117 Msa0319340:intron 35.0%
TCATCATCATCTTCAAACTC+CGG - chr2_4:18917141-18917160 None:intergenic 35.0%
TGCCAAAAGTTAGCAAAAGA+TGG - chr2_4:18917617-18917636 None:intergenic 35.0%
GTCATGAACAAATGACATAG+AGG - chr2_4:18917665-18917684 None:intergenic 35.0%
GCACGTTACTGAATCTTTAA+AGG - chr2_4:18917761-18917780 None:intergenic 35.0%
GCTGTTAATGAGAAAGTTCA+AGG + chr2_4:18917873-18917892 Msa0319340:CDS 35.0%
!! ATTAGTTTGCCATTTCCATC+TGG + chr2_4:18917976-18917995 Msa0319340:intron 35.0%
TCAACTGTATTGCCAAATTG+TGG - chr2_4:18918145-18918164 None:intergenic 35.0%
AGTATGGAGATTCAGTGATT+GGG + chr2_4:18918401-18918420 Msa0319340:CDS 35.0%
!! CATTTTGATGAACTTCGAGA+TGG + chr2_4:18918473-18918492 Msa0319340:CDS 35.0%
!! ACAAAAGTATTAAACTCGGG+AGG - chr2_4:18918606-18918625 None:intergenic 35.0%
CACAGATGATGAAGAAGAAT+GGG + chr2_4:18918632-18918651 Msa0319340:CDS 35.0%
AAGAAGAATGGGATGATGAA+TGG + chr2_4:18918643-18918662 Msa0319340:CDS 35.0%
AGAAGAATGGGATGATGAAT+GGG + chr2_4:18918644-18918663 Msa0319340:CDS 35.0%
GATTATGATGATATTGAGGG+CGG + chr2_4:18918693-18918712 Msa0319340:CDS 35.0%
GGATTGAGAATTGAGAATGT+AGG + chr2_4:18918783-18918802 Msa0319340:three_prime_UTR 35.0%
ATAGTGCCTCCATAGTTAAG+AGG - chr2_4:18915976-18915995 None:intergenic 40.0%
!! ACTATGGAGGCACTATTCAA+AGG + chr2_4:18915980-18915999 Msa0319340:exon 40.0%
!!! AACATGGTAGTGGTTTTTGG+AGG - chr2_4:18916034-18916053 None:intergenic 40.0%
!!! GCTAACATGGTAGTGGTTTT+TGG - chr2_4:18916037-18916056 None:intergenic 40.0%
GTTTGATGCTAACATGGTAG+TGG - chr2_4:18916044-18916063 None:intergenic 40.0%
AAGAGGGTTTGATGCTAACA+TGG - chr2_4:18916050-18916069 None:intergenic 40.0%
GATGAAGAAAGGTGGTGATT+TGG - chr2_4:18916085-18916104 None:intergenic 40.0%
ATGATGAGGATGAAGAAAGG+TGG - chr2_4:18916093-18916112 None:intergenic 40.0%
ACGATGATGAGGATGAAGAA+AGG - chr2_4:18916096-18916115 None:intergenic 40.0%
TCTCACTCATTATGAATGCC+CGG + chr2_4:18916158-18916177 Msa0319340:CDS 40.0%
CCAGTGCTTTCATCTGATTT+AGG - chr2_4:18916220-18916239 None:intergenic 40.0%
! CCTAAATCAGATGAAAGCAC+TGG + chr2_4:18916217-18916236 Msa0319340:CDS 40.0%
GGAAGATGGTAAACTTCTTC+CGG + chr2_4:18917119-18917138 Msa0319340:CDS 40.0%
AGTTTCCACGTCAAGCTTTA+GGG - chr2_4:18917294-18917313 None:intergenic 40.0%
! CATTATGGTTTAGGGCAGTA+TGG - chr2_4:18917517-18917536 None:intergenic 40.0%
ATGTTATAACCGTGCTCTCT+TGG + chr2_4:18917549-18917568 Msa0319340:intron 40.0%
AAGATGGATCTAAATCCACC+TGG - chr2_4:18917601-18917620 None:intergenic 40.0%
TCATGAGAAACATGCAGAAG+AGG + chr2_4:18917845-18917864 Msa0319340:CDS 40.0%
ACATGAATGCCAGATGGAAA+TGG - chr2_4:18917988-18918007 None:intergenic 40.0%
ATAGTGACATGAATGCCAGA+TGG - chr2_4:18917994-18918013 None:intergenic 40.0%
! CACTGTTGCTTACCACAATT+TGG + chr2_4:18918130-18918149 Msa0319340:intron 40.0%
!! GACTTTTTGAGGGAGAAGAA+AGG + chr2_4:18918375-18918394 Msa0319340:intron 40.0%
GAGTATGGAGATTCAGTGAT+TGG + chr2_4:18918400-18918419 Msa0319340:CDS 40.0%
GTATGGAGATTCAGTGATTG+GGG + chr2_4:18918402-18918421 Msa0319340:CDS 40.0%
TGATTGGGGTATGAGAAAGT+TGG + chr2_4:18918416-18918435 Msa0319340:CDS 40.0%
CAACGAGTTCAAGACTTTGT+TGG + chr2_4:18918509-18918528 Msa0319340:CDS 40.0%
TTCGACACCTAGTGATAAAG+AGG + chr2_4:18918550-18918569 Msa0319340:CDS 40.0%
TCGACACCTAGTGATAAAGA+GGG + chr2_4:18918551-18918570 Msa0319340:CDS 40.0%
! AAAGTATTAAACTCGGGAGG+AGG - chr2_4:18918603-18918622 None:intergenic 40.0%
GCACAGATGATGAAGAAGAA+TGG + chr2_4:18918631-18918650 Msa0319340:CDS 40.0%
TGAATGGGATGATGAAGATG+AGG + chr2_4:18918659-18918678 Msa0319340:CDS 40.0%
GATGATGAAGATGAGGAAGA+TGG + chr2_4:18918666-18918685 Msa0319340:CDS 40.0%
GGCCAGAAAATAGCATAATG+AGG + chr2_4:18918762-18918781 Msa0319340:exon 40.0%
TTGGCGTGAAAACGATGATG+AGG - chr2_4:18916107-18916126 None:intergenic 45.0%
! CATAGCTGTTGTGTTGGTGT+CGG + chr2_4:18916782-18916801 Msa0319340:intron 45.0%
AATTAGTCGTGTCCCAGCTT+CGG - chr2_4:18916828-18916847 None:intergenic 45.0%
CAGAAGACAGTTGAGGAAGA+TGG + chr2_4:18917105-18917124 Msa0319340:intron 45.0%
TGAATCCCTAAAGCTTGACG+TGG + chr2_4:18917286-18917305 Msa0319340:CDS 45.0%
CAGTTTCCACGTCAAGCTTT+AGG - chr2_4:18917295-18917314 None:intergenic 45.0%
GCTTGACGTGGAAACTGATA+TGG + chr2_4:18917298-18917317 Msa0319340:CDS 45.0%
! GGTCTTATCAGACATTCACC+AGG + chr2_4:18917580-18917599 Msa0319340:intron 45.0%
CTTATCAGACATTCACCAGG+TGG + chr2_4:18917583-18917602 Msa0319340:intron 45.0%
GCTATAGTGTTATGCCGTAG+CGG + chr2_4:18918026-18918045 Msa0319340:intron 45.0%
! GATTTGGTCCAATTCCGCTA+CGG - chr2_4:18918043-18918062 None:intergenic 45.0%
GGGAGAAGAAAGGAAGAGTA+TGG + chr2_4:18918385-18918404 Msa0319340:CDS 45.0%
CTTCGTCCCTCTTTATCACT+AGG - chr2_4:18918560-18918579 None:intergenic 45.0%
TATTAAACTCGGGAGGAGGA+GGG - chr2_4:18918599-18918618 None:intergenic 45.0%
!! TGTTGTGTTGGTGTCGGTGT+TGG + chr2_4:18916788-18916807 Msa0319340:intron 50.0%
ACTGATGTGTGTCCGAAGCT+GGG + chr2_4:18916813-18916832 Msa0319340:intron 50.0%
! GTGTTATGCCGTAGCGGAAT+TGG + chr2_4:18918032-18918051 Msa0319340:intron 50.0%
GTATTAAACTCGGGAGGAGG+AGG - chr2_4:18918600-18918619 None:intergenic 50.0%
GATGATATTGAGGGCGGTGA+TGG + chr2_4:18918699-18918718 Msa0319340:CDS 50.0%
TGTCAGCGTGTTCGTGTTCG+TGG - chr2_4:18916723-18916742 None:intergenic 55.0%
CACTGATGTGTGTCCGAAGC+TGG + chr2_4:18916812-18916831 Msa0319340:intron 55.0%
CCAGACTGTCCAAGAGAGCA+CGG - chr2_4:18917561-18917580 None:intergenic 55.0%
CGTGCTCTCTTGGACAGTCT+GGG + chr2_4:18917559-18917578 Msa0319340:intron 55.0%
CCGTGCTCTCTTGGACAGTC+TGG + chr2_4:18917558-18917577 Msa0319340:intron 60.0%
TGAAGCGCAGACGCAGACGC+AGG + chr2_4:18916691-18916710 Msa0319340:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 18915949 18918958 18915949 ID=Msa0319340;Name=Msa0319340
chr2_4 mRNA 18915949 18918958 18915949 ID=Msa0319340-mRNA-1;Parent=Msa0319340;Name=Msa0319340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|0.8|0.66|6|151|293
chr2_4 exon 18915949 18916270 18915949 ID=Msa0319340-mRNA-1:exon:7070;Parent=Msa0319340-mRNA-1
chr2_4 exon 18917108 18917162 18917108 ID=Msa0319340-mRNA-1:exon:7071;Parent=Msa0319340-mRNA-1
chr2_4 exon 18917276 18917332 18917276 ID=Msa0319340-mRNA-1:exon:7072;Parent=Msa0319340-mRNA-1
chr2_4 exon 18917817 18917894 18917817 ID=Msa0319340-mRNA-1:exon:7073;Parent=Msa0319340-mRNA-1
chr2_4 exon 18918376 18918908 18918376 ID=Msa0319340-mRNA-1:exon:7074;Parent=Msa0319340-mRNA-1
chr2_4 exon 18918937 18918958 18918937 ID=Msa0319340-mRNA-1:exon:7075;Parent=Msa0319340-mRNA-1
chr2_4 five_prime_UTR 18915949 18915982 18915949 ID=Msa0319340-mRNA-1:five_prime_utr;Parent=Msa0319340-mRNA-1
chr2_4 CDS 18915983 18916270 18915983 ID=Msa0319340-mRNA-1:cds;Parent=Msa0319340-mRNA-1
chr2_4 CDS 18917108 18917162 18917108 ID=Msa0319340-mRNA-1:cds;Parent=Msa0319340-mRNA-1
chr2_4 CDS 18917276 18917332 18917276 ID=Msa0319340-mRNA-1:cds;Parent=Msa0319340-mRNA-1
chr2_4 CDS 18917817 18917894 18917817 ID=Msa0319340-mRNA-1:cds;Parent=Msa0319340-mRNA-1
chr2_4 CDS 18918376 18918779 18918376 ID=Msa0319340-mRNA-1:cds;Parent=Msa0319340-mRNA-1
chr2_4 three_prime_UTR 18918780 18918908 18918780 ID=Msa0319340-mRNA-1:three_prime_utr;Parent=Msa0319340-mRNA-1
chr2_4 three_prime_UTR 18918937 18918958 18918937 ID=Msa0319340-mRNA-1:three_prime_utr;Parent=Msa0319340-mRNA-1
Gene Sequence

>Msa0319340

ATGGAGGCACTATTCAAAGGTTCTTCTTATCTCTCACCTTCTTCTAAACCTCCAAAAACCACTACCATGTTAGCATCAAACCCTCTTCGTTTCAATTTCCCAAATCACCACCTTTCTTCATCCTCATCATCGTTTTCACGCCAATTTTCTCTTCAAAATAACCCCAGAAAATCATTCTCACTCATTATGAATGCCCGGAAGAAAGATAAGAAACAAGATACTCATAGTTTTGTGCCTAAATCAGATGAAAGCACTGGCTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAGACAGTTGAGGAAGATGGTAAACTTCTTCCGGAGTTTGAAGATGATGATGAAAGAAAGCTCTATGAATCCCTAAAGCTTGACGTGGAAACTGATATGGACGTTGAACTATTGCGCCACTATGAGATTGTTTACTTGATTCATGAGAAACATGCAGAAGAGGTTGTTGCTGTTAATGAGAAAGTTCAAGACTTTTTGAGGGAGAAGAAAGGAAGAGTATGGAGATTCAGTGATTGGGGTATGAGAAAGTTGGCTTACAAAATACAGAAAGCTAACAACGCACACTACATTTTGATGAACTTCGAGATGGACGCCAAATATATCAACGAGTTCAAGACTTTGTTGGACAAAGATGAAAGAGTTATTCGACACCTAGTGATAAAGAGGGACGAAGCAATCACTGAAGATTGCCCTCCTCCTCCCGAGTTTAATACTTTTGTTGCTAGCACAGATGATGAAGAAGAATGGGATGATGAATGGGATGATGAAGATGAGGAAGATGGATCTGATTATGATGATATTGAGGGCGGTGATGGAATTTTCATTATAGACGATGATGATTTGGAAATATCAGAGGGCCAGAAAATAGCATAA

Protein sequence

>Msa0319340

MEALFKGSSYLSPSSKPPKTTTMLASNPLRFNFPNHHLSSSSSSFSRQFSLQNNPRKSFSLIMNARKKDKKQDTHSFVPKSDESTGFFPESVLLKKKTVEEDGKLLPEFEDDDERKLYESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWRFSDWGMRKLAYKIQKANNAHYILMNFEMDAKYINEFKTLLDKDERVIRHLVIKRDEAITEDCPPPPEFNTFVASTDDEEEWDDEWDDEDEEDGSDYDDIEGGDGIFIIDDDDLEISEGQKIA*