AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292060 MtrunA17_Chr2g0312521 97.059 136 4 0 1 136 1 136 2.64e-91 260
Msa0292060 MtrunA17_Chr4g0053641 54.430 79 17 1 12 90 20 79 3.18e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292060 AT1G79040.1 70.714 140 37 2 1 136 1 140 1.27e-63 191

Find 75 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCGACTGGCTTGGCTATC+TGG 0.093434 2_3:-40815859 Msa0292060:CDS
TTGAACTAATCTAAGATTAA+TGG 0.187241 2_3:+40815395 None:intergenic
TAACATGTTGATAAACATTT+TGG 0.191956 2_3:+40815598 None:intergenic
CCATTTAAGTATTTAGTCTT+TGG 0.256901 2_3:-40815499 Msa0292060:three_prime_UTR
CCAAAGACTAAATACTTAAA+TGG 0.283652 2_3:+40815499 None:intergenic
CAGTCCTTTGGGTCGTAGAT+AGG 0.323072 2_3:+40816436 None:intergenic
TATATAACCATGCATCTCTA+TGG 0.324691 2_3:-40815626 Msa0292060:three_prime_UTR
CCGGTTGGAGACCAGTCCTT+TGG 0.338674 2_3:+40816424 None:intergenic
GTTGAGAGATCTTCAGTTAG+AGG 0.360227 2_3:-40818049 Msa0292060:CDS
GAGGGCTACCTGCCCTTTCA+AGG 0.379312 2_3:-40818030 Msa0292060:CDS
CCAGATGGAAAAGATGCTTC+TGG 0.381325 2_3:-40817782 Msa0292060:CDS
CATGAATGAAAATACCTAAT+GGG 0.381352 2_3:+40815056 None:intergenic
ATTAAGACTGACACACCTTA+TGG 0.391389 2_3:-40817974 Msa0292060:intron
AGTATTTAGTCTTTGGCTTA+CGG 0.392100 2_3:-40815492 Msa0292060:three_prime_UTR
AAAATACCTAATGGGATTGC+GGG 0.398310 2_3:+40815064 None:intergenic
GCATGAATGAAAATACCTAA+TGG 0.404950 2_3:+40815055 None:intergenic
CGGTTGGAGACCAGTCCTTT+GGG 0.408090 2_3:+40816425 None:intergenic
CACCGTATTTGTCCACAAAC+TGG 0.410816 2_3:+40816875 None:intergenic
TCCGACTGGCTTGGCTATCT+GGG 0.439109 2_3:-40815858 Msa0292060:CDS
AATACACCCGCAATCCCATT+AGG 0.444514 2_3:-40815070 Msa0292060:three_prime_UTR
ACCACTGGCAACAACTTTGA+AGG 0.450669 2_3:+40818006 None:intergenic
AAAGGGTGTTTACCAGTTTG+TGG 0.454085 2_3:-40816887 Msa0292060:CDS
CTCTTTGATAATACTAATGT+AGG 0.459828 2_3:-40815453 Msa0292060:three_prime_UTR
GTGCTAATGTTGATGGATAC+AGG 0.463270 2_3:-40816855 Msa0292060:intron
CTCTCAACTCTGAAAGGAGT+TGG 0.463414 2_3:+40818064 None:intergenic
AAATACGGTGCTAATGTTGA+TGG 0.464376 2_3:-40816862 Msa0292060:CDS
CTTAATCTTCTTGCCACCAC+TGG 0.469574 2_3:+40817991 None:intergenic
AACTTTGAAGGGCCTTGAAA+GGG 0.471747 2_3:+40818018 None:intergenic
TACCAGTTTGTGGACAAATA+CGG 0.473942 2_3:-40816877 Msa0292060:CDS
TTATTAATTGCAGGTCCGAC+TGG 0.479017 2_3:-40815872 Msa0292060:intron
CAACTTTGAAGGGCCTTGAA+AGG 0.493804 2_3:+40818017 None:intergenic
ATCTGGGCAGTAACTCTAGC+TGG 0.496777 2_3:-40815842 Msa0292060:CDS
TTTCATGCTGTAAGCTGTCT+CGG 0.498626 2_3:-40815418 Msa0292060:three_prime_UTR
CCAAAGGACTGGTCTCCAAC+CGG 0.502102 2_3:-40816424 Msa0292060:CDS
CAAACAAACTCCACCGAGAT+CGG 0.503968 2_3:-40815348 Msa0292060:three_prime_UTR
ACTCTAGCTGGTCTTCTAGC+TGG 0.504630 2_3:-40815830 Msa0292060:CDS
AGTCCTTTGGGTCGTAGATA+GGG 0.509259 2_3:+40816437 None:intergenic
CACAATATTTATAGAACAGA+AGG 0.512290 2_3:+40815673 None:intergenic
TTCAAAGTTGTTGCCAGTGG+TGG 0.513402 2_3:-40818004 Msa0292060:CDS
AATTGCAGGTCCGACTGGCT+TGG 0.514526 2_3:-40815867 Msa0292060:intron
TGCTTCTGGCAGGAAACAAA+AGG 0.517286 2_3:-40817768 Msa0292060:intron
AAATGTAAAGCACATAATGT+GGG 0.529451 2_3:-40815319 Msa0292060:three_prime_UTR
CAAACAAAATCACAAATCCT+TGG 0.531913 2_3:-40818199 Msa0292060:five_prime_UTR
ACACCAATAGCAATCTGAAA+AGG 0.531985 2_3:-40815169 Msa0292060:three_prime_UTR
AAAATGTAAAGCACATAATG+TGG 0.534848 2_3:-40815320 Msa0292060:three_prime_UTR
TGTTTATAAGTGATAGTCTA+CGG 0.536090 2_3:-40815552 Msa0292060:three_prime_UTR
GAAAATACCTAATGGGATTG+CGG 0.541326 2_3:+40815063 None:intergenic
TTTAGGAACTGGAGGTGGCA+TGG 0.542136 2_3:-40817810 Msa0292060:intron
ATGGAAAAGATGCTTCTGGC+AGG 0.542571 2_3:-40817778 Msa0292060:CDS
TTGAGAGATCTTCAGTTAGA+GGG 0.542662 2_3:-40818048 Msa0292060:CDS
TGAAATGGCATCTTCAGTGA+TGG 0.543667 2_3:-40818104 Msa0292060:exon
GAAGATCTCTCAACTCTGAA+AGG 0.546327 2_3:+40818058 None:intergenic
TTGAAGGGCCTTGAAAGGGC+AGG 0.552420 2_3:+40818022 None:intergenic
TCTGTTCTATAAATATTGTG+TGG 0.554934 2_3:-40815670 Msa0292060:three_prime_UTR
CCCTTCAAAGTTGTTGCCAG+TGG 0.558879 2_3:-40818007 Msa0292060:CDS
CCACTGGCAACAACTTTGAA+GGG 0.578449 2_3:+40818007 None:intergenic
CTAGCTGGTCTTCTAGCTGG+TGG 0.579831 2_3:-40815827 Msa0292060:CDS
ATATACTCATCAATTACTTG+TGG 0.583157 2_3:-40815704 Msa0292060:three_prime_UTR
GGTGGCATGGCCTTGCCAGA+TGG 0.588864 2_3:-40817797 Msa0292060:CDS
TTGGTATGGGCAACAAAACA+AGG 0.588926 2_3:+40818144 None:intergenic
CTATCTACGACCCAAAGGAC+TGG 0.590400 2_3:-40816435 Msa0292060:CDS
GGTGAAGCCATAGAGATGCA+TGG 0.605619 2_3:+40815619 None:intergenic
ACCTCCAGTGTAGACATCAC+CGG 0.624297 2_3:+40816405 None:intergenic
GTATTATCAAAGAGATAACA+AGG 0.640449 2_3:+40815462 None:intergenic
CAGCCCTATCTACGACCCAA+AGG 0.645785 2_3:-40816440 Msa0292060:CDS
CCAACCGGTGATGTCTACAC+TGG 0.647391 2_3:-40816409 Msa0292060:CDS
AAGCACTTGTGTTGTAGACA+AGG 0.648013 2_3:+40815798 None:intergenic
GCCCAGATAGCCAAGCCAGT+CGG 0.648776 2_3:+40815857 None:intergenic
ACCGGTGATGTCTACACTGG+AGG 0.649993 2_3:-40816406 Msa0292060:intron
AATGTAAAGCACATAATGTG+GGG 0.654683 2_3:-40815318 Msa0292060:three_prime_UTR
CCAGTGTAGACATCACCGGT+TGG 0.671824 2_3:+40816409 None:intergenic
ACAAACTCCACCGAGATCGG+AGG 0.693791 2_3:-40815345 Msa0292060:three_prime_UTR
TTGTATTATATGCATCAGTG+TGG 0.704850 2_3:+40815131 None:intergenic
ATAATATAGAGTAGACACCA+AGG 0.730067 2_3:+40818182 None:intergenic
ACCATAAATTACATGCCACG+TGG 0.742193 2_3:-40818224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTTATTTTATTT+TGG - chr2_3:40815527-40815546 Msa0292060:three_prime_UTR 0.0%
!!! AATTTTGTTAATATGATTTT+AGG - chr2_3:40815440-40815459 Msa0292060:three_prime_UTR 10.0%
!!! TAGTTATAGATTATTTATTT+TGG - chr2_3:40815556-40815575 Msa0292060:three_prime_UTR 10.0%
!!! AATTTAATAAACTTTTTTTG+AGG - chr2_3:40815626-40815645 Msa0292060:three_prime_UTR 10.0%
!!! CAAATTCTTTTTTTGATATT+TGG + chr2_3:40815145-40815164 None:intergenic 15.0%
!! ATCAAAAAAAGAATTTGAAA+TGG - chr2_3:40815148-40815167 Msa0292060:three_prime_UTR 15.0%
!!! TTATAGATTATTTATTTTGG+TGG - chr2_3:40815559-40815578 Msa0292060:three_prime_UTR 15.0%
!!! TCTTAATTTCAATTTTATTC+AGG - chr2_3:40816356-40816375 Msa0292060:intron 15.0%
!!! CTTAATTTCAATTTTATTCA+GGG - chr2_3:40816357-40816376 Msa0292060:intron 15.0%
!!! AAATTACATTTTGAATAAGT+AGG + chr2_3:40816792-40816811 None:intergenic 15.0%
!!! TAACAAATTTTATTAATTGC+AGG - chr2_3:40817386-40817405 Msa0292060:intron 15.0%
!!! CTTTTTTTGATATTTGGTAT+GGG + chr2_3:40815139-40815158 None:intergenic 20.0%
!!! TCTTTTTTTGATATTTGGTA+TGG + chr2_3:40815140-40815159 None:intergenic 20.0%
!! CAATTGAACTAAGAAAAAAA+AGG + chr2_3:40815333-40815352 None:intergenic 20.0%
!!! GGAATTTTATGTATTAACAT+AGG - chr2_3:40815580-40815599 Msa0292060:three_prime_UTR 20.0%
!! ATTATCAAGATTTATTTCCA+TGG - chr2_3:40815732-40815751 Msa0292060:three_prime_UTR 20.0%
!! TTATCAAGATTTATTTCCAT+GGG - chr2_3:40815733-40815752 Msa0292060:three_prime_UTR 20.0%
!!! ATTTTTTTGTTTTAATCCTC+TGG + chr2_3:40815763-40815782 None:intergenic 20.0%
!!! ATTTATTCAACTTTTAGCTT+TGG - chr2_3:40815800-40815819 Msa0292060:CDS 20.0%
!! AGTTTCTTATATCAAAAACT+TGG - chr2_3:40815866-40815885 Msa0292060:intron 20.0%
!! GTTCTAATGAAATACATTAA+AGG - chr2_3:40816160-40816179 Msa0292060:intron 20.0%
!! AATAATAGATAACTATGTTC+TGG + chr2_3:40816264-40816283 None:intergenic 20.0%
!!! TTTCATTTTTTCTGAATTCT+AGG - chr2_3:40816443-40816462 Msa0292060:intron 20.0%
!! ATTAAACATGTAAACAAAAC+TGG + chr2_3:40816470-40816489 None:intergenic 20.0%
!! ACATGTTTAATAACATAGTT+AGG - chr2_3:40816479-40816498 Msa0292060:intron 20.0%
!! TGAAATAATTATGTCATTAG+AGG - chr2_3:40816502-40816521 Msa0292060:intron 20.0%
!! ATTCAATTATTTACTTCAGA+GGG - chr2_3:40817171-40817190 Msa0292060:intron 20.0%
!!! TAACATGTTGATAAACATTT+TGG + chr2_3:40817672-40817691 None:intergenic 20.0%
!!! TTGAACTAATCTAAGATTAA+TGG + chr2_3:40817875-40817894 None:intergenic 20.0%
!!! GTTAATATGATTTTAGGAAC+TGG - chr2_3:40815446-40815465 Msa0292060:three_prime_UTR 25.0%
! GATAACTAAAATCTGACTTA+TGG + chr2_3:40815695-40815714 None:intergenic 25.0%
!!! AAGTAAGGTGGATTTTATAT+AGG - chr2_3:40816138-40816157 Msa0292060:intron 25.0%
!! TTTCAATTTTATTCAGGGAA+AGG - chr2_3:40816362-40816381 Msa0292060:intron 25.0%
!! TTCAATTTTATTCAGGGAAA+GGG - chr2_3:40816363-40816382 Msa0292060:intron 25.0%
! AAAAACAATCATGACATAAG+TGG - chr2_3:40816539-40816558 Msa0292060:intron 25.0%
! TAGGTCAAAGTCTATATAAT+TGG + chr2_3:40816773-40816792 None:intergenic 25.0%
!!! AGGTAAGAAACTTCTTTTTT+TGG - chr2_3:40816881-40816900 Msa0292060:CDS 25.0%
!!! GGTAAGAAACTTCTTTTTTT+GGG - chr2_3:40816882-40816901 Msa0292060:CDS 25.0%
! ATAAAATAGCATGAACTGTA+GGG - chr2_3:40816937-40816956 Msa0292060:intron 25.0%
!!! TTTTTAAAGCATTGCTTTAG+AGG + chr2_3:40816972-40816991 None:intergenic 25.0%
! CACATTATAACATCAACAAT+AGG + chr2_3:40817104-40817123 None:intergenic 25.0%
! GATTCAATTATTTACTTCAG+AGG - chr2_3:40817170-40817189 Msa0292060:intron 25.0%
!! TTTGTTATCATACTATTGCT+AGG + chr2_3:40817373-40817392 None:intergenic 25.0%
! ATATACTCATCAATTACTTG+TGG - chr2_3:40817563-40817582 Msa0292060:intron 25.0%
! CACAATATTTATAGAACAGA+AGG + chr2_3:40817597-40817616 None:intergenic 25.0%
! TCTGTTCTATAAATATTGTG+TGG - chr2_3:40817597-40817616 Msa0292060:intron 25.0%
! TGTTTATAAGTGATAGTCTA+CGG - chr2_3:40817715-40817734 Msa0292060:intron 25.0%
! CCAAAGACTAAATACTTAAA+TGG + chr2_3:40817771-40817790 None:intergenic 25.0%
!! CCATTTAAGTATTTAGTCTT+TGG - chr2_3:40817768-40817787 Msa0292060:intron 25.0%
! GTATTATCAAAGAGATAACA+AGG + chr2_3:40817808-40817827 None:intergenic 25.0%
!! CTCTTTGATAATACTAATGT+AGG - chr2_3:40817814-40817833 Msa0292060:intron 25.0%
! AAAATGTAAAGCACATAATG+TGG - chr2_3:40817947-40817966 Msa0292060:intron 25.0%
! AAATGTAAAGCACATAATGT+GGG - chr2_3:40817948-40817967 Msa0292060:intron 25.0%
! CATGAATGAAAATACCTAAT+GGG + chr2_3:40818214-40818233 None:intergenic 25.0%
CAAACAAAATCACAAATCCT+TGG - chr2_3:40815068-40815087 Msa0292060:three_prime_UTR 30.0%
ATAATATAGAGTAGACACCA+AGG + chr2_3:40815088-40815107 None:intergenic 30.0%
GTACTAATGAACTAACCATA+AGG + chr2_3:40815311-40815330 None:intergenic 30.0%
!! AATATGATTTTAGGAACTGG+AGG - chr2_3:40815449-40815468 Msa0292060:three_prime_UTR 30.0%
TATGTATTAACATAGGCTTG+TGG - chr2_3:40815587-40815606 Msa0292060:three_prime_UTR 30.0%
! TTGATAATTCGTAGTTCGAT+TGG + chr2_3:40815720-40815739 None:intergenic 30.0%
AGAATAAATAGTAGACCAAG+AGG + chr2_3:40815826-40815845 None:intergenic 30.0%
TAAGAAACTAGATGAAGAGA+GGG + chr2_3:40815855-40815874 None:intergenic 30.0%
ATAAGAAACTAGATGAAGAG+AGG + chr2_3:40815856-40815875 None:intergenic 30.0%
TCTATGTGGTTAAGATGTTA+AGG + chr2_3:40815923-40815942 None:intergenic 30.0%
AACCACATAGACTAATTGAA+TGG - chr2_3:40815932-40815951 Msa0292060:intron 30.0%
! ATCCATTCAATTAGTCTATG+TGG + chr2_3:40815937-40815956 None:intergenic 30.0%
TAAGTAGAGAGTGATTCTTA+AGG - chr2_3:40815975-40815994 Msa0292060:intron 30.0%
AAGTAGAGAGTGATTCTTAA+GGG - chr2_3:40815976-40815995 Msa0292060:intron 30.0%
GTTTCTCACAAGATAAAGTA+AGG - chr2_3:40816123-40816142 Msa0292060:intron 30.0%
! TTGAGTGTCCCTTATATTTT+TGG - chr2_3:40816283-40816302 Msa0292060:intron 30.0%
! TGAGTGTCCCTTATATTTTT+GGG - chr2_3:40816284-40816303 Msa0292060:intron 30.0%
CAGAAAGCCCAAAAATATAA+GGG + chr2_3:40816294-40816313 None:intergenic 30.0%
TCAGAAAGCCCAAAAATATA+AGG + chr2_3:40816295-40816314 None:intergenic 30.0%
GCTGGTACATATAAAAAAGT+TGG - chr2_3:40816655-40816674 Msa0292060:intron 30.0%
GATAAAATAGCATGAACTGT+AGG - chr2_3:40816936-40816955 Msa0292060:intron 30.0%
!! TAGAGAGTAGTGTTTAGTTT+TGG - chr2_3:40817206-40817225 Msa0292060:intron 30.0%
AAATCTTTGTATAGCCAACA+CGG + chr2_3:40817313-40817332 None:intergenic 30.0%
TATATAACCATGCATCTCTA+TGG - chr2_3:40817641-40817660 Msa0292060:intron 30.0%
! AGTATTTAGTCTTTGGCTTA+CGG - chr2_3:40817775-40817794 Msa0292060:CDS 30.0%
AATGTAAAGCACATAATGTG+GGG - chr2_3:40817949-40817968 Msa0292060:intron 30.0%
! TTACCTTTTCAGATTGCTAT+TGG + chr2_3:40818104-40818123 None:intergenic 30.0%
TTGTATTATATGCATCAGTG+TGG + chr2_3:40818139-40818158 None:intergenic 30.0%
GCATGAATGAAAATACCTAA+TGG + chr2_3:40818215-40818234 None:intergenic 30.0%
TTGAGAGATCTTCAGTTAGA+GGG - chr2_3:40815219-40815238 Msa0292060:three_prime_UTR 35.0%
ATTAAGACTGACACACCTTA+TGG - chr2_3:40815293-40815312 Msa0292060:three_prime_UTR 35.0%
TCTCACAAGATAAAGTAAGG+TGG - chr2_3:40816126-40816145 Msa0292060:intron 35.0%
TACCAGTTTGTGGACAAATA+CGG - chr2_3:40816390-40816409 Msa0292060:intron 35.0%
! AAATACGGTGCTAATGTTGA+TGG - chr2_3:40816405-40816424 Msa0292060:intron 35.0%
CAAGACTAATGTCTCATGTT+TGG - chr2_3:40816620-40816639 Msa0292060:intron 35.0%
ATAGGGCTGCATAATAAAAC+AGG + chr2_3:40816816-40816835 None:intergenic 35.0%
ATAAGTTCAACTGGTCGAAT+TGG - chr2_3:40817005-40817024 Msa0292060:intron 35.0%
TAAGTTCAACTGGTCGAATT+GGG - chr2_3:40817006-40817025 Msa0292060:intron 35.0%
! CATGAGCGAAGATAGTTTTT+AGG + chr2_3:40817237-40817256 None:intergenic 35.0%
!!! CCTTCATTTTTAGAGCTACA+TGG + chr2_3:40817543-40817562 None:intergenic 35.0%
!! CCATGTAGCTCTAAAAATGA+AGG - chr2_3:40817540-40817559 Msa0292060:intron 35.0%
! CAATGCATGTTTTCTGTTCA+TGG + chr2_3:40817697-40817716 None:intergenic 35.0%
!! TACATTTTAACCTCCGATCT+CGG + chr2_3:40817935-40817954 None:intergenic 35.0%
!! GATAAATCTTTTGCTGACTG+AGG + chr2_3:40818004-40818023 None:intergenic 35.0%
ACACCAATAGCAATCTGAAA+AGG - chr2_3:40818098-40818117 Msa0292060:CDS 35.0%
AAAATACCTAATGGGATTGC+GGG + chr2_3:40818206-40818225 None:intergenic 35.0%
GAAAATACCTAATGGGATTG+CGG + chr2_3:40818207-40818226 None:intergenic 35.0%
TTGGTATGGGCAACAAAACA+AGG + chr2_3:40815126-40815145 None:intergenic 40.0%
TGAAATGGCATCTTCAGTGA+TGG - chr2_3:40815163-40815182 Msa0292060:three_prime_UTR 40.0%
GAAGATCTCTCAACTCTGAA+AGG + chr2_3:40815212-40815231 None:intergenic 40.0%
GTTGAGAGATCTTCAGTTAG+AGG - chr2_3:40815218-40815237 Msa0292060:three_prime_UTR 40.0%
! AACTTTGAAGGGCCTTGAAA+GGG + chr2_3:40815252-40815271 None:intergenic 40.0%
!! ATGATTTTAGGAACTGGAGG+TGG - chr2_3:40815452-40815471 Msa0292060:three_prime_UTR 40.0%
!!! AACTTTTAGCTTTGGCCTCT+TGG - chr2_3:40815808-40815827 Msa0292060:CDS 40.0%
!! AAAGGGTGTTTACCAGTTTG+TGG - chr2_3:40816380-40816399 Msa0292060:intron 40.0%
! GTGCTAATGTTGATGGATAC+AGG - chr2_3:40816412-40816431 Msa0292060:CDS 40.0%
GTTTGGATTGATACTCTAGC+TGG - chr2_3:40816637-40816656 Msa0292060:intron 40.0%
! GACTAACGTCTCTCATGTTT+TGG - chr2_3:40816719-40816738 Msa0292060:intron 40.0%
GCATGAACTGTAGGGATTTA+TGG - chr2_3:40816945-40816964 Msa0292060:intron 40.0%
ATCGAGCTGATAAGTTCAAC+TGG - chr2_3:40816996-40817015 Msa0292060:intron 40.0%
CAACTATTTCAAGACCGTGT+TGG - chr2_3:40817296-40817315 Msa0292060:intron 40.0%
TTATTAATTGCAGGTCCGAC+TGG - chr2_3:40817395-40817414 Msa0292060:intron 40.0%
AAGCACTTGTGTTGTAGACA+AGG + chr2_3:40817472-40817491 None:intergenic 40.0%
TTTCATGCTGTAAGCTGTCT+CGG - chr2_3:40817849-40817868 Msa0292060:intron 40.0%
!! GTGATTTTGTTTGTGCCACG+TGG + chr2_3:40815061-40815080 None:intergenic 45.0%
! CTCTCAACTCTGAAAGGAGT+TGG + chr2_3:40815206-40815225 None:intergenic 45.0%
! CAACTTTGAAGGGCCTTGAA+AGG + chr2_3:40815253-40815272 None:intergenic 45.0%
CCACTGGCAACAACTTTGAA+GGG + chr2_3:40815263-40815282 None:intergenic 45.0%
ACCACTGGCAACAACTTTGA+AGG + chr2_3:40815264-40815283 None:intergenic 45.0%
TTCAAAGTTGTTGCCAGTGG+TGG - chr2_3:40815263-40815282 Msa0292060:three_prime_UTR 45.0%
CTTAATCTTCTTGCCACCAC+TGG + chr2_3:40815279-40815298 None:intergenic 45.0%
! AGCATCTTTTCCATCTGGCA+AGG + chr2_3:40815483-40815502 None:intergenic 45.0%
!!! CCAGAAGCATCTTTTCCATC+TGG + chr2_3:40815488-40815507 None:intergenic 45.0%
CCAGATGGAAAAGATGCTTC+TGG - chr2_3:40815485-40815504 Msa0292060:three_prime_UTR 45.0%
ATGGAAAAGATGCTTCTGGC+AGG - chr2_3:40815489-40815508 Msa0292060:three_prime_UTR 45.0%
TGCTTCTGGCAGGAAACAAA+AGG - chr2_3:40815499-40815518 Msa0292060:three_prime_UTR 45.0%
TATTTCCATGGGAACACCAG+AGG - chr2_3:40815744-40815763 Msa0292060:three_prime_UTR 45.0%
TTAATCCTCTGGTGTTCCCA+TGG + chr2_3:40815752-40815771 None:intergenic 45.0%
CACCGTATTTGTCCACAAAC+TGG + chr2_3:40816395-40816414 None:intergenic 45.0%
AGTCCTTTGGGTCGTAGATA+GGG + chr2_3:40816833-40816852 None:intergenic 45.0%
TTGGGAATCGACTACTTCAC+CGG - chr2_3:40817024-40817043 Msa0292060:intron 45.0%
!! CGAATTGCTCAGTTCTGAAC+CGG + chr2_3:40817046-40817065 None:intergenic 45.0%
CAAACAAACTCCACCGAGAT+CGG - chr2_3:40817919-40817938 Msa0292060:intron 45.0%
!! ATTTTAACCTCCGATCTCGG+TGG + chr2_3:40817932-40817951 None:intergenic 45.0%
!! TCTTTTGCTGACTGAGGTTG+AGG + chr2_3:40817998-40818017 None:intergenic 45.0%
AATACACCCGCAATCCCATT+AGG - chr2_3:40818197-40818216 Msa0292060:five_prime_UTR 45.0%
!! TAATTTAAACATTTATTTAT+TGG - chr2_3:40816021-40816040 Msa0292060:intron 5.0%
CCCTTCAAAGTTGTTGCCAG+TGG - chr2_3:40815260-40815279 Msa0292060:three_prime_UTR 50.0%
TTTAGGAACTGGAGGTGGCA+TGG - chr2_3:40815457-40815476 Msa0292060:three_prime_UTR 50.0%
CAGTCCTTTGGGTCGTAGAT+AGG + chr2_3:40816834-40816853 None:intergenic 50.0%
CTATCTACGACCCAAAGGAC+TGG - chr2_3:40816832-40816851 Msa0292060:intron 50.0%
ACCTCCAGTGTAGACATCAC+CGG + chr2_3:40816865-40816884 None:intergenic 50.0%
ATCTGGGCAGTAACTCTAGC+TGG - chr2_3:40817425-40817444 Msa0292060:intron 50.0%
!! ACTCTAGCTGGTCTTCTAGC+TGG - chr2_3:40817437-40817456 Msa0292060:intron 50.0%
GGTGAAGCCATAGAGATGCA+TGG + chr2_3:40817651-40817670 None:intergenic 50.0%
TTGAAGGGCCTTGAAAGGGC+AGG + chr2_3:40815248-40815267 None:intergenic 55.0%
CAGCCCTATCTACGACCCAA+AGG - chr2_3:40816827-40816846 Msa0292060:intron 55.0%
CGGTTGGAGACCAGTCCTTT+GGG + chr2_3:40816845-40816864 None:intergenic 55.0%
!! CCAAAGGACTGGTCTCCAAC+CGG - chr2_3:40816843-40816862 Msa0292060:intron 55.0%
CCAGTGTAGACATCACCGGT+TGG + chr2_3:40816861-40816880 None:intergenic 55.0%
CCAACCGGTGATGTCTACAC+TGG - chr2_3:40816858-40816877 Msa0292060:CDS 55.0%
ACCGGTGATGTCTACACTGG+AGG - chr2_3:40816861-40816880 Msa0292060:CDS 55.0%
! AATTGCAGGTCCGACTGGCT+TGG - chr2_3:40817400-40817419 Msa0292060:intron 55.0%
!! TCCGACTGGCTTGGCTATCT+GGG - chr2_3:40817409-40817428 Msa0292060:intron 55.0%
!! CTAGCTGGTCTTCTAGCTGG+TGG - chr2_3:40817440-40817459 Msa0292060:intron 55.0%
ACAAACTCCACCGAGATCGG+AGG - chr2_3:40817922-40817941 Msa0292060:intron 55.0%
GAGGGCTACCTGCCCTTTCA+AGG - chr2_3:40815237-40815256 Msa0292060:three_prime_UTR 60.0%
CCGGTTGGAGACCAGTCCTT+TGG + chr2_3:40816846-40816865 None:intergenic 60.0%
!! GTCCGACTGGCTTGGCTATC+TGG - chr2_3:40817408-40817427 Msa0292060:intron 60.0%
GCCCAGATAGCCAAGCCAGT+CGG + chr2_3:40817413-40817432 None:intergenic 60.0%
! GGTGGCATGGCCTTGCCAGA+TGG - chr2_3:40815470-40815489 Msa0292060:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40815055 40818234 40815055 ID=Msa0292060;Name=Msa0292060
chr2_3 mRNA 40815055 40818234 40815055 ID=Msa0292060-mRNA-1;Parent=Msa0292060;Name=Msa0292060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|1|1|1|1|1|5|732|136
chr2_3 exon 40815055 40815881 40815055 ID=Msa0292060-mRNA-1:exon:13154;Parent=Msa0292060-mRNA-1
chr2_3 exon 40816407 40816459 40816407 ID=Msa0292060-mRNA-1:exon:13153;Parent=Msa0292060-mRNA-1
chr2_3 exon 40816856 40816911 40816856 ID=Msa0292060-mRNA-1:exon:13152;Parent=Msa0292060-mRNA-1
chr2_3 exon 40817769 40817827 40817769 ID=Msa0292060-mRNA-1:exon:13151;Parent=Msa0292060-mRNA-1
chr2_3 exon 40817975 40818234 40817975 ID=Msa0292060-mRNA-1:exon:13150;Parent=Msa0292060-mRNA-1
chr2_3 five_prime_UTR 40818123 40818234 40818123 ID=Msa0292060-mRNA-1:five_prime_utr;Parent=Msa0292060-mRNA-1
chr2_3 CDS 40817975 40818122 40817975 ID=Msa0292060-mRNA-1:cds;Parent=Msa0292060-mRNA-1
chr2_3 CDS 40817769 40817827 40817769 ID=Msa0292060-mRNA-1:cds;Parent=Msa0292060-mRNA-1
chr2_3 CDS 40816856 40816911 40816856 ID=Msa0292060-mRNA-1:cds;Parent=Msa0292060-mRNA-1
chr2_3 CDS 40816407 40816459 40816407 ID=Msa0292060-mRNA-1:cds;Parent=Msa0292060-mRNA-1
chr2_3 CDS 40815787 40815881 40815787 ID=Msa0292060-mRNA-1:cds;Parent=Msa0292060-mRNA-1
chr2_3 three_prime_UTR 40815055 40815786 40815055 ID=Msa0292060-mRNA-1:three_prime_utr;Parent=Msa0292060-mRNA-1
Gene Sequence

>Msa0292060

ATGGCATCTTCAGTGATGGCTTCTGTGAGTTTGAAACCAACTCCTTTCAGAGTTGAGAGATCTTCAGTTAGAGGGCTACCTGCCCTTTCAAGGCCCTTCAAAGTTGTTGCCAGTGGTGGCAAGAAGATTAAGACTGACACACCTTATGGAACTGGAGGTGGCATGGCCTTGCCAGATGGAAAAGATGCTTCTGGCAGGAAACAAAAGGGAAAGGGTGTTTACCAGTTTGTGGACAAATACGGTGCTAATGTTGATGGATACAGCCCTATCTACGACCCAAAGGACTGGTCTCCAACCGGTGATGTCTACACTGGAGGTCCGACTGGCTTGGCTATCTGGGCAGTAACTCTAGCTGGTCTTCTAGCTGGTGGTGCACTCCTTGTCTACAACACAAGTGCTTTGTCACAATAG

Protein sequence

>Msa0292060

MASSVMASVSLKPTPFRVERSSVRGLPALSRPFKVVASGGKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYDPKDWSPTGDVYTGGPTGLAIWAVTLAGLLAGGALLVYNTSALSQ*