AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242680 MtrunA17_Chr2g0294971 95.455 110 4 1 1 110 1 109 2.02e-75 223
Msa0242680 MtrunA17_Chr1g0192511 55.056 89 36 1 20 108 24 108 9.00e-33 115
Msa0242680 MtrunA17_Chr7g0271931 51.685 89 38 1 20 103 32 120 9.28e-30 108
Msa0242680 MtrunA17_Chr7g0269721 43.269 104 57 1 14 115 5 108 1.53e-25 96.3
Msa0242680 MtrunA17_Chr1g0192501 47.887 142 58 8 97 228 3 138 9.67e-24 92.4
Msa0242680 MtrunA17_Chr4g0046711 38.532 109 58 3 1 104 1 105 4.94e-21 84.3
Msa0242680 MtrunA17_Chr7g0271941 48.000 125 57 4 110 228 1 123 2.66e-20 83.2
Msa0242680 MtrunA17_Chr2g0294981 100.000 34 0 0 195 228 8 41 1.51e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242680 AT5G49230.1 47.863 234 93 8 1 228 1 211 2.95e-55 176
Msa0242680 AT3G05700.1 44.770 239 105 9 1 228 1 223 7.47e-52 167
Msa0242680 AT5G49230.2 46.154 234 92 8 1 228 1 206 1.69e-51 166
Msa0242680 AT3G06760.1 49.763 211 88 7 23 228 27 224 2.62e-51 166
Msa0242680 AT5G26990.1 44.167 240 104 9 1 228 1 222 6.27e-51 165
Msa0242680 AT3G05700.2 45.178 197 82 8 1 187 1 181 6.25e-43 144
Msa0242680 AT1G56280.1 42.991 214 87 8 20 226 14 199 2.80e-41 140
Msa0242680 AT1G56280.2 44.162 197 78 8 37 226 34 205 9.33e-38 131
Msa0242680 AT4G02200.1 40.415 193 89 6 39 225 37 209 8.93e-34 121
Msa0242680 AT3G06760.2 41.629 221 101 8 23 228 27 234 3.72e-32 117
Msa0242680 AT4G02200.2 39.459 185 86 6 39 217 37 201 2.69e-30 112
Msa0242680 AT4G02200.3 37.681 207 89 7 39 225 37 223 1.21e-29 110
Msa0242680 AT1G02750.1 36.041 197 97 6 39 227 41 216 3.59e-28 106
Msa0242680 AT1G02750.2 30.928 194 95 4 39 227 41 200 4.46e-21 87.8

Find 70 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTCTCTATCTTCAATTT+AGG 0.061459 2_2:+19018195 Msa0242680:five_prime_UTR
CACTCTCTATCTTCAATTTA+GGG 0.237702 2_2:+19018196 Msa0242680:five_prime_UTR
GCAGGATTGCATTCTCTTCT+TGG 0.245703 2_2:+19020251 Msa0242680:CDS
GTGGTGGTGGTGATGATTTA+AGG 0.255964 2_2:+19018442 Msa0242680:CDS
CTAGTGTAGCAGCTGAAATA+AGG 0.265670 2_2:-19021237 None:intergenic
TGTAGCTGGTATACTATAAT+AGG 0.281627 2_2:+19021016 Msa0242680:three_prime_UTR
CTACACTAGACTGACATAAT+TGG 0.286778 2_2:+19021251 Msa0242680:three_prime_UTR
TCATAATCTTCAGCACAAAA+AGG 0.288334 2_2:-19018480 None:intergenic
ATTACATATTTACTCGATAA+AGG 0.293138 2_2:-19021162 None:intergenic
AAGTTTACGTGCAGCGTAAA+AGG 0.305767 2_2:+19020174 Msa0242680:CDS
TTGAATAGGTGCATATTAGA+TGG 0.343964 2_2:-19021205 None:intergenic
AAAGAAACCAACTTTCAAAA+AGG 0.347692 2_2:-19019666 None:intergenic
ACAGCTTCGTCACCAACAAC+TGG 0.357688 2_2:-19020341 None:intergenic
AACGATTGCAACAAAGTATC+AGG 0.362978 2_2:-19020308 None:intergenic
TTTCGAGCTATCGTTTACTA+TGG 0.363939 2_2:-19020396 None:intergenic
TTCAGGTGTGTCCTGCTTGT+GGG 0.376343 2_2:+19019579 Msa0242680:intron
CAAAGTATCAGGTTCGGAAT+TGG 0.385398 2_2:-19020297 None:intergenic
TGGTGGTGGTGATGATTTAA+GGG 0.397394 2_2:+19018443 Msa0242680:CDS
GTTTACTATGGCAGCTTCAA+TGG 0.397661 2_2:-19020384 None:intergenic
TAATGAATGTATCTATTGTT+AGG 0.400511 2_2:+19021181 Msa0242680:three_prime_UTR
AATATGCACCTATTCAAATA+TGG 0.407575 2_2:+19021211 Msa0242680:three_prime_UTR
TAGTGTAGCAGCTGAAATAA+GGG 0.424904 2_2:-19021236 None:intergenic
ATGAATCAGAGTCCATGTTT+TGG 0.426328 2_2:-19018233 None:intergenic
AGCAGTGCATGCACCTGGTT+TGG 0.429277 2_2:+19021301 Msa0242680:three_prime_UTR
AGAAAAGAGCTGAGGGAAGC+AGG 0.432775 2_2:+19020233 Msa0242680:CDS
CGCCGTTACTATTCTCGATC+CGG 0.436721 2_2:+19018285 Msa0242680:CDS
TAAGGGGACCATATTTGAAT+AGG 0.442155 2_2:-19021219 None:intergenic
AAAACATGGACTCTGATTCA+TGG 0.453838 2_2:+19018235 Msa0242680:exon
GGATTGCATTCTCTTCTTGG+AGG 0.458470 2_2:+19020254 Msa0242680:CDS
TTTCAGGTGTGTCCTGCTTG+TGG 0.467996 2_2:+19019578 Msa0242680:intron
CGAAGGTTTGATTTCGTGCA+AGG 0.485172 2_2:+19020949 Msa0242680:CDS
GTTATAATTGCAATTGTAGC+TGG 0.487425 2_2:+19021002 Msa0242680:exon
GATGCTGAACCTGGTGGTGG+TGG 0.514579 2_2:+19018429 Msa0242680:CDS
AGTATCAGGTTCGGAATTGG+AGG 0.520777 2_2:-19020294 None:intergenic
TTATAACTCATCATCAAGAA+TGG 0.527350 2_2:-19020986 None:intergenic
CAGAGTGGCAGTAGCTAGAT+CGG 0.528724 2_2:+19021081 Msa0242680:three_prime_UTR
TGGTATACTATAATAGGAGC+AGG 0.532207 2_2:+19021022 Msa0242680:three_prime_UTR
CTAAAAGCAGTGCATGCACC+TGG 0.532509 2_2:+19021296 Msa0242680:three_prime_UTR
TAGCTCGAAAGATGATTTCG+TGG 0.542543 2_2:+19020409 Msa0242680:CDS
TTGCAACAAAGTATCAGGTT+CGG 0.543065 2_2:-19020303 None:intergenic
ATCCTCTTCAAGCTAACACT+GGG 0.551131 2_2:+19018538 Msa0242680:CDS
CATCCTCTTCAAGCTAACAC+TGG 0.567489 2_2:+19018537 Msa0242680:CDS
CTTCTCTACTCGATCCTCGT+CGG 0.568903 2_2:-19020923 None:intergenic
CAGGAGCTGATCACGAGGGA+GGG 0.572539 2_2:+19021041 Msa0242680:three_prime_UTR
GGAAATGATGATGCTGAACC+TGG 0.576479 2_2:+19018420 Msa0242680:CDS
ACCCCAGTGTTAGCTTGAAG+AGG 0.580064 2_2:-19018540 None:intergenic
CGAAAGATGATTTCGTGGAA+AGG 0.582410 2_2:+19020414 Msa0242680:CDS
AGGAGCAGGAGCTGATCACG+AGG 0.583778 2_2:+19021036 Msa0242680:three_prime_UTR
GTTATTTAGAAAAGAGCTGA+GGG 0.585988 2_2:+19020226 Msa0242680:CDS
TTCGGAATTGGAGGAAGCTG+TGG 0.593717 2_2:-19020285 None:intergenic
GCAGGAGCTGATCACGAGGG+AGG 0.602008 2_2:+19021040 Msa0242680:three_prime_UTR
CGTTATTTAGAAAAGAGCTG+AGG 0.604500 2_2:+19020225 Msa0242680:CDS
GAAGGTTTGATTTCGTGCAA+GGG 0.604633 2_2:+19020950 Msa0242680:CDS
CGTAAAAGGAGGGTGAGGAA+AGG 0.608256 2_2:+19020188 Msa0242680:CDS
CAGCTTCGTCACCAACAACT+GGG 0.608504 2_2:-19020340 None:intergenic
TTTACGTGCAGCGTAAAAGG+AGG 0.609185 2_2:+19020177 Msa0242680:CDS
TGCAGCGTAAAAGGAGGGTG+AGG 0.609548 2_2:+19020183 Msa0242680:CDS
AAATCATCACCACCACCACC+AGG 0.612097 2_2:-19018438 None:intergenic
GATGATGCTGAACCTGGTGG+TGG 0.614096 2_2:+19018426 Msa0242680:CDS
TAACTCATCATCAAGAATGG+TGG 0.628185 2_2:-19020983 None:intergenic
TCGTCGGAAAGCTGTACTTG+TGG 0.638527 2_2:-19020907 None:intergenic
AACCGGATCGAGAATAGTAA+CGG 0.650025 2_2:-19018287 None:intergenic
ATCGAGTAGAGAAGACACGA+AGG 0.652664 2_2:+19020932 Msa0242680:CDS
GGAGCAGGAGCTGATCACGA+GGG 0.655098 2_2:+19021037 Msa0242680:three_prime_UTR
AGTGTAGCAGCTGAAATAAG+GGG 0.660186 2_2:-19021235 None:intergenic
TTACGTGCAGCGTAAAAGGA+GGG 0.661430 2_2:+19020178 Msa0242680:CDS
TTCATTCGAGTGTTACAGAG+TGG 0.673676 2_2:+19021066 Msa0242680:three_prime_UTR
ACAAGTACAGCTTTCCGACG+AGG 0.683663 2_2:+19020909 Msa0242680:CDS
AATGATGATGCTGAACCTGG+TGG 0.756267 2_2:+19018423 Msa0242680:CDS
TCCTCTTCAAGCTAACACTG+GGG 0.784823 2_2:+19018539 Msa0242680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAATGATAATTATGA+TGG - chr2_2:19018317-19018336 None:intergenic 10.0%
!!! AATAAAGATATGTTTAATTT+TGG + chr2_2:19018756-19018775 Msa0242680:intron 10.0%
!!! TTTTATTACATAAATTTGAT+AGG + chr2_2:19019177-19019196 Msa0242680:intron 10.0%
!! TTTATTCAAAATTGTAATTG+AGG - chr2_2:19018742-19018761 None:intergenic 15.0%
!!! CAACAATTTATTTTAAAATG+TGG + chr2_2:19018880-19018899 Msa0242680:intron 15.0%
!!! TTAAAATGTGGTTATATTTT+AGG + chr2_2:19018892-19018911 Msa0242680:intron 15.0%
!!! TAAAATGTGGTTATATTTTA+GGG + chr2_2:19018893-19018912 Msa0242680:intron 15.0%
!!! TAAAAAATGTACACATTTTT+CGG - chr2_2:19019885-19019904 None:intergenic 15.0%
!!! AAAATGTGTACATTTTTTAA+TGG + chr2_2:19019886-19019905 Msa0242680:intron 15.0%
!!! TTTAGTTTTGTTGAAATTGT+TGG + chr2_2:19018355-19018374 Msa0242680:intron 20.0%
!!! TTTCAGTTTTCACATATATT+AGG + chr2_2:19018652-19018671 Msa0242680:intron 20.0%
!!! GTTTTAATTAAGGTTATACA+TGG + chr2_2:19018803-19018822 Msa0242680:intron 20.0%
!!! AAAATGTGGTTATATTTTAG+GGG + chr2_2:19018894-19018913 Msa0242680:intron 20.0%
!!! AAAATATCCTTTTTGAAAGT+TGG + chr2_2:19019659-19019678 Msa0242680:CDS 20.0%
!! AATGCAATAAAATATGAACA+TGG - chr2_2:19019822-19019841 None:intergenic 20.0%
!!! TCAAATAAAATTTGTTTTCC+AGG - chr2_2:19019845-19019864 None:intergenic 20.0%
!!! TCTATATAAAAGTATAGTAC+CGG + chr2_2:19020639-19020658 Msa0242680:intron 20.0%
!! ATTACATATTTACTCGATAA+AGG - chr2_2:19021165-19021184 None:intergenic 20.0%
!! TAATGAATGTATCTATTGTT+AGG + chr2_2:19021181-19021200 Msa0242680:three_prime_UTR 20.0%
!!! ATAATTATGATGGTTCTAAC+CGG - chr2_2:19018307-19018326 None:intergenic 25.0%
!!! GTTTTTAACTTTCAAACACT+TGG + chr2_2:19018778-19018797 Msa0242680:intron 25.0%
!!! ACACTTGGTAGTTTTAATTA+AGG + chr2_2:19018793-19018812 Msa0242680:intron 25.0%
!!! AAATGTGGTTATATTTTAGG+GGG + chr2_2:19018895-19018914 Msa0242680:intron 25.0%
! GTATTTAGTGCAATTTACTT+TGG + chr2_2:19018929-19018948 Msa0242680:intron 25.0%
! CATAAATTTGATAGGTTGTT+TGG + chr2_2:19019185-19019204 Msa0242680:intron 25.0%
! ATATAACATTATGCAGTGTT+TGG + chr2_2:19019275-19019294 Msa0242680:intron 25.0%
! TCTTCATAGAATAGATATAC+AGG + chr2_2:19019326-19019345 Msa0242680:intron 25.0%
! AAAGAAACCAACTTTCAAAA+AGG - chr2_2:19019669-19019688 None:intergenic 25.0%
!! TTCATATTTTATTGCATTCC+TGG + chr2_2:19019824-19019843 Msa0242680:intron 25.0%
! CATGCTAAATATAAACATAC+TGG - chr2_2:19019956-19019975 None:intergenic 25.0%
! TTTATTTCAGTATCGTTAGA+TGG + chr2_2:19020034-19020053 Msa0242680:intron 25.0%
!! TAATTAAATCAAGTTGTGTC+TGG + chr2_2:19020097-19020116 Msa0242680:intron 25.0%
!!! TTTATTTTTAACCCAGTTGT+TGG + chr2_2:19020329-19020348 Msa0242680:CDS 25.0%
!!! TAAGTTGTAGGTATTTTTGT+AGG + chr2_2:19020493-19020512 Msa0242680:intron 25.0%
!!! AAGTTGTAGGTATTTTTGTA+GGG + chr2_2:19020494-19020513 Msa0242680:intron 25.0%
! GAGTTAAGTAATCTATATAC+CGG - chr2_2:19020618-19020637 None:intergenic 25.0%
! TTATAACTCATCATCAAGAA+TGG - chr2_2:19020989-19021008 None:intergenic 25.0%
! AATATGCACCTATTCAAATA+TGG + chr2_2:19021211-19021230 Msa0242680:three_prime_UTR 25.0%
!!! GTTTTTTGTGAAGTGTGTTT+GGG - chr2_2:19018133-19018152 None:intergenic 30.0%
!!! TGTTTTTTGTGAAGTGTGTT+TGG - chr2_2:19018134-19018153 None:intergenic 30.0%
ACACTCTCTATCTTCAATTT+AGG + chr2_2:19018195-19018214 Msa0242680:five_prime_UTR 30.0%
CACTCTCTATCTTCAATTTA+GGG + chr2_2:19018196-19018215 Msa0242680:five_prime_UTR 30.0%
!!! TGTTGGTGATGATTTGTTTT+TGG + chr2_2:19018372-19018391 Msa0242680:intron 30.0%
!!! TGTTGTTTCAGATCTGTTTT+TGG + chr2_2:19018395-19018414 Msa0242680:intron 30.0%
!! GTTGTTTCAGATCTGTTTTT+GGG + chr2_2:19018396-19018415 Msa0242680:intron 30.0%
CATAATCTTCAGCACAAAAA+GGG - chr2_2:19018482-19018501 None:intergenic 30.0%
TCATAATCTTCAGCACAAAA+AGG - chr2_2:19018483-19018502 None:intergenic 30.0%
!! GTTATATTTTAGGGGGAAAA+AGG + chr2_2:19018902-19018921 Msa0242680:intron 30.0%
TTTAGTGCAATTTACTTTGG+AGG + chr2_2:19018932-19018951 Msa0242680:intron 30.0%
AGAAATCATAGATACGATGA+GGG + chr2_2:19018999-19019018 Msa0242680:intron 30.0%
AGAAATCATAGATACGATGA+GGG + chr2_2:19018999-19019018 Msa0242680:intron 30.0%
GCTCATTAAAACTAATAAGC+AGG - chr2_2:19019458-19019477 None:intergenic 30.0%
CTGATGATTGTGATAATTGA+TGG + chr2_2:19019542-19019561 Msa0242680:intron 30.0%
! ATTGTGATAATTGATGGCAT+TGG + chr2_2:19019548-19019567 Msa0242680:intron 30.0%
! GCACCATTCATATATGTTTT+CGG + chr2_2:19019740-19019759 Msa0242680:intron 30.0%
ACACCGAAAACATATATGAA+TGG - chr2_2:19019746-19019765 None:intergenic 30.0%
CAATTGATACACAAGTTTGT+TGG + chr2_2:19019783-19019802 Msa0242680:intron 30.0%
GTTATTTAGAAAAGAGCTGA+GGG + chr2_2:19020226-19020245 Msa0242680:CDS 30.0%
ATGTATGTGGATACTATTGT+TGG + chr2_2:19020438-19020457 Msa0242680:intron 30.0%
!! GATTTCCTTTGCTTTAGAAA+TGG + chr2_2:19020466-19020485 Msa0242680:intron 30.0%
TAGAATATTATTTACCCCAC+CGG + chr2_2:19020596-19020615 Msa0242680:intron 30.0%
TAAGTAATCTATATACCGGT+GGG - chr2_2:19020614-19020633 None:intergenic 30.0%
TTAAGTAATCTATATACCGG+TGG - chr2_2:19020615-19020634 None:intergenic 30.0%
CATACATGTGATTAGATTTG+TGG + chr2_2:19020687-19020706 Msa0242680:intron 30.0%
TGATGAAATGTTGTATCCTT+AGG + chr2_2:19020733-19020752 Msa0242680:intron 30.0%
GTTATAATTGCAATTGTAGC+TGG + chr2_2:19021002-19021021 Msa0242680:exon 30.0%
TGTAGCTGGTATACTATAAT+AGG + chr2_2:19021016-19021035 Msa0242680:three_prime_UTR 30.0%
TTGAATAGGTGCATATTAGA+TGG - chr2_2:19021208-19021227 None:intergenic 30.0%
TTGGCTAACATAAAAAAGAC+TGG + chr2_2:19021270-19021289 Msa0242680:three_prime_UTR 30.0%
!!! CCATGTTTTGGTGGAAAATT+CGG - chr2_2:19018224-19018243 None:intergenic 35.0%
! ATGAATCAGAGTCCATGTTT+TGG - chr2_2:19018236-19018255 None:intergenic 35.0%
AAAACATGGACTCTGATTCA+TGG + chr2_2:19018235-19018254 Msa0242680:exon 35.0%
GAGAAATCATAGATACGATG+AGG + chr2_2:19018998-19019017 Msa0242680:intron 35.0%
GAGAAATCATAGATACGATG+AGG + chr2_2:19018998-19019017 Msa0242680:intron 35.0%
CATACTAACTTTCCCATATC+CGG - chr2_2:19019134-19019153 None:intergenic 35.0%
TAGTATGAGTTTGTGTTGAG+TGG + chr2_2:19019147-19019166 Msa0242680:intron 35.0%
CTGTTCTACCAATACTTGTT+TGG + chr2_2:19019407-19019426 Msa0242680:intron 35.0%
CTTGAACACCAAACAAGTAT+TGG - chr2_2:19019418-19019437 None:intergenic 35.0%
GACAAAGACTGACTAAAACA+TGG - chr2_2:19019480-19019499 None:intergenic 35.0%
!!! GGTTGGTGTTTCTTTGTTTT+TGG + chr2_2:19019509-19019528 Msa0242680:intron 35.0%
!!! TGGCATTGGTTATACTTTTC+AGG + chr2_2:19019562-19019581 Msa0242680:intron 35.0%
GAAAAACTTTGCATGTTGAG+TGG - chr2_2:19019639-19019658 None:intergenic 35.0%
CGTTATTTAGAAAAGAGCTG+AGG + chr2_2:19020225-19020244 Msa0242680:CDS 35.0%
! TTGCAACAAAGTATCAGGTT+CGG - chr2_2:19020306-19020325 None:intergenic 35.0%
! AACGATTGCAACAAAGTATC+AGG - chr2_2:19020311-19020330 None:intergenic 35.0%
TTTCGAGCTATCGTTTACTA+TGG - chr2_2:19020399-19020418 None:intergenic 35.0%
!! AGCATCCATTTCTAAAGCAA+AGG - chr2_2:19020474-19020493 None:intergenic 35.0%
AGAAATGGATGCTAAGTTGT+AGG + chr2_2:19020481-19020500 Msa0242680:intron 35.0%
AAGTAATCTATATACCGGTG+GGG - chr2_2:19020613-19020632 None:intergenic 35.0%
TCACATGTATGCAGAGTAAA+TGG - chr2_2:19020678-19020697 None:intergenic 35.0%
! ATTTGTGGACACTTTGTTTG+AGG + chr2_2:19020702-19020721 Msa0242680:intron 35.0%
GTATCCTTAGGAATAATGTC+TGG + chr2_2:19020745-19020764 Msa0242680:intron 35.0%
GAAACCAGACATTATTCCTA+AGG - chr2_2:19020752-19020771 None:intergenic 35.0%
CTATTACAGTTCAAGTCACA+TGG - chr2_2:19020774-19020793 None:intergenic 35.0%
! TACTGTCAGACTACATGTTT+TGG - chr2_2:19020870-19020889 None:intergenic 35.0%
TAACTCATCATCAAGAATGG+TGG - chr2_2:19020986-19021005 None:intergenic 35.0%
TGGTATACTATAATAGGAGC+AGG + chr2_2:19021022-19021041 Msa0242680:three_prime_UTR 35.0%
TAAGGGGACCATATTTGAAT+AGG - chr2_2:19021222-19021241 None:intergenic 35.0%
TAGTGTAGCAGCTGAAATAA+GGG - chr2_2:19021239-19021258 None:intergenic 35.0%
CTACACTAGACTGACATAAT+TGG + chr2_2:19021251-19021270 Msa0242680:three_prime_UTR 35.0%
! ATTTTATTAGGGACCAAACC+AGG - chr2_2:19021317-19021336 None:intergenic 35.0%
! CCGAATTTTCCACCAAAACA+TGG + chr2_2:19018221-19018240 Msa0242680:exon 40.0%
!! AATCAGAGTCCATGTTTTGG+TGG - chr2_2:19018233-19018252 None:intergenic 40.0%
AACCGGATCGAGAATAGTAA+CGG - chr2_2:19018290-19018309 None:intergenic 40.0%
!!! GTTTCAGATCTGTTTTTGGG+TGG + chr2_2:19018399-19018418 Msa0242680:intron 40.0%
!! TGGTGGTGGTGATGATTTAA+GGG + chr2_2:19018443-19018462 Msa0242680:CDS 40.0%
ATCCTCTTCAAGCTAACACT+GGG + chr2_2:19018538-19018557 Msa0242680:CDS 40.0%
!! ATTTTAGGGGGAAAAAGGCT+TGG + chr2_2:19018907-19018926 Msa0242680:intron 40.0%
!!! GGATGCGCTACTTTTAAGAT+GGG - chr2_2:19019113-19019132 None:intergenic 40.0%
CATCTTAAAAGTAGCGCATC+CGG + chr2_2:19019112-19019131 Msa0242680:intron 40.0%
TCAGTCTTTGTCCATTGTCA+TGG + chr2_2:19019488-19019507 Msa0242680:intron 40.0%
TCTTTGTCCATTGTCATGGT+TGG + chr2_2:19019492-19019511 Msa0242680:intron 40.0%
AGAAACACCAACCATGACAA+TGG - chr2_2:19019502-19019521 None:intergenic 40.0%
! TGCACGTAAACTTCTGGTTA+TGG - chr2_2:19020167-19020186 None:intergenic 40.0%
AAGTTTACGTGCAGCGTAAA+AGG + chr2_2:19020174-19020193 Msa0242680:CDS 40.0%
! CAAAGTATCAGGTTCGGAAT+TGG - chr2_2:19020300-19020319 None:intergenic 40.0%
GTTTACTATGGCAGCTTCAA+TGG - chr2_2:19020387-19020406 None:intergenic 40.0%
TAGCTCGAAAGATGATTTCG+TGG + chr2_2:19020409-19020428 Msa0242680:CDS 40.0%
CGAAAGATGATTTCGTGGAA+AGG + chr2_2:19020414-19020433 Msa0242680:CDS 40.0%
! TTCGTGGAAAGGTATGTATG+TGG + chr2_2:19020425-19020444 Msa0242680:intron 40.0%
ATGTATGCAGAGTAAATGGC+GGG - chr2_2:19020674-19020693 None:intergenic 40.0%
CATGTATGCAGAGTAAATGG+CGG - chr2_2:19020675-19020694 None:intergenic 40.0%
ATGTAGTCTGACAGTAGCTA+TGG + chr2_2:19020874-19020893 Msa0242680:intron 40.0%
! GAAGGTTTGATTTCGTGCAA+GGG + chr2_2:19020950-19020969 Msa0242680:CDS 40.0%
TTCATTCGAGTGTTACAGAG+TGG + chr2_2:19021066-19021085 Msa0242680:three_prime_UTR 40.0%
AGTGTAGCAGCTGAAATAAG+GGG - chr2_2:19021238-19021257 None:intergenic 40.0%
CTAGTGTAGCAGCTGAAATA+AGG - chr2_2:19021240-19021259 None:intergenic 40.0%
! GGAAATGATGATGCTGAACC+TGG + chr2_2:19018420-19018439 Msa0242680:CDS 45.0%
! AATGATGATGCTGAACCTGG+TGG + chr2_2:19018423-19018442 Msa0242680:CDS 45.0%
!! GTGGTGGTGGTGATGATTTA+AGG + chr2_2:19018442-19018461 Msa0242680:CDS 45.0%
CATCCTCTTCAAGCTAACAC+TGG + chr2_2:19018537-19018556 Msa0242680:CDS 45.0%
TCCTCTTCAAGCTAACACTG+GGG + chr2_2:19018539-19018558 Msa0242680:CDS 45.0%
!!! CGGATGCGCTACTTTTAAGA+TGG - chr2_2:19019114-19019133 None:intergenic 45.0%
AAAAGTAGCGCATCCGGATA+TGG + chr2_2:19019118-19019137 Msa0242680:intron 45.0%
AAAGTAGCGCATCCGGATAT+GGG + chr2_2:19019119-19019138 Msa0242680:intron 45.0%
TTACGCTGCACGTAAACTTC+TGG - chr2_2:19020173-19020192 None:intergenic 45.0%
TTTACGTGCAGCGTAAAAGG+AGG + chr2_2:19020177-19020196 Msa0242680:CDS 45.0%
TTACGTGCAGCGTAAAAGGA+GGG + chr2_2:19020178-19020197 Msa0242680:CDS 45.0%
GCAGGATTGCATTCTCTTCT+TGG + chr2_2:19020251-19020270 Msa0242680:CDS 45.0%
GGATTGCATTCTCTTCTTGG+AGG + chr2_2:19020254-19020273 Msa0242680:CDS 45.0%
AGTATCAGGTTCGGAATTGG+AGG - chr2_2:19020297-19020316 None:intergenic 45.0%
ATCGAGTAGAGAAGACACGA+AGG + chr2_2:19020932-19020951 Msa0242680:CDS 45.0%
! CGAAGGTTTGATTTCGTGCA+AGG + chr2_2:19020949-19020968 Msa0242680:CDS 45.0%
!!! TAATAAAAATTGTATTTTTA+AGG + chr2_2:19018620-19018639 Msa0242680:intron 5.0%
CGCCGTTACTATTCTCGATC+CGG + chr2_2:19018285-19018304 Msa0242680:CDS 50.0%
AAATCATCACCACCACCACC+AGG - chr2_2:19018441-19018460 None:intergenic 50.0%
! ACCCCAGTGTTAGCTTGAAG+AGG - chr2_2:19018543-19018562 None:intergenic 50.0%
TCTTCAAGCTAACACTGGGG+TGG + chr2_2:19018542-19018561 Msa0242680:intron 50.0%
CTTCAAGCTAACACTGGGGT+GGG + chr2_2:19018543-19018562 Msa0242680:intron 50.0%
! TTTCAGGTGTGTCCTGCTTG+TGG + chr2_2:19019578-19019597 Msa0242680:intron 50.0%
TTCAGGTGTGTCCTGCTTGT+GGG + chr2_2:19019579-19019598 Msa0242680:intron 50.0%
TCCTGCTTGTGGGCAAAAAG+TGG + chr2_2:19019589-19019608 Msa0242680:CDS 50.0%
CCTGCTTGTGGGCAAAAAGT+GGG + chr2_2:19019590-19019609 Msa0242680:CDS 50.0%
CTGCTTGTGGGCAAAAAGTG+GGG + chr2_2:19019591-19019610 Msa0242680:CDS 50.0%
TTGTGGGCAAAAAGTGGGGA+TGG + chr2_2:19019595-19019614 Msa0242680:CDS 50.0%
CGTAAAAGGAGGGTGAGGAA+AGG + chr2_2:19020188-19020207 Msa0242680:CDS 50.0%
AGAAAAGAGCTGAGGGAAGC+AGG + chr2_2:19020233-19020252 Msa0242680:CDS 50.0%
TTCGGAATTGGAGGAAGCTG+TGG - chr2_2:19020288-19020307 None:intergenic 50.0%
CAGCTTCGTCACCAACAACT+GGG - chr2_2:19020343-19020362 None:intergenic 50.0%
ACAGCTTCGTCACCAACAAC+TGG - chr2_2:19020344-19020363 None:intergenic 50.0%
! AAATGGCGGGAACATGCATC+CGG - chr2_2:19020661-19020680 None:intergenic 50.0%
TCGTCGGAAAGCTGTACTTG+TGG - chr2_2:19020910-19020929 None:intergenic 50.0%
ACAAGTACAGCTTTCCGACG+AGG + chr2_2:19020909-19020928 Msa0242680:CDS 50.0%
CTTCTCTACTCGATCCTCGT+CGG - chr2_2:19020926-19020945 None:intergenic 50.0%
CAGAGTGGCAGTAGCTAGAT+CGG + chr2_2:19021081-19021100 Msa0242680:three_prime_UTR 50.0%
CTAAAAGCAGTGCATGCACC+TGG + chr2_2:19021296-19021315 Msa0242680:three_prime_UTR 50.0%
GATGATGCTGAACCTGGTGG+TGG + chr2_2:19018426-19018445 Msa0242680:CDS 55.0%
!!! CCCACTTTTTGCCCACAAGC+AGG - chr2_2:19019593-19019612 None:intergenic 55.0%
TGCAGCGTAAAAGGAGGGTG+AGG + chr2_2:19020183-19020202 Msa0242680:CDS 55.0%
AGCAGTGCATGCACCTGGTT+TGG + chr2_2:19021301-19021320 Msa0242680:three_prime_UTR 55.0%
!! GATGCTGAACCTGGTGGTGG+TGG + chr2_2:19018429-19018448 Msa0242680:CDS 60.0%
AGGAGCAGGAGCTGATCACG+AGG + chr2_2:19021036-19021055 Msa0242680:three_prime_UTR 60.0%
GGAGCAGGAGCTGATCACGA+GGG + chr2_2:19021037-19021056 Msa0242680:three_prime_UTR 60.0%
CAGGAGCTGATCACGAGGGA+GGG + chr2_2:19021041-19021060 Msa0242680:three_prime_UTR 60.0%
GCAGGAGCTGATCACGAGGG+AGG + chr2_2:19021040-19021059 Msa0242680:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 19018112 19021345 19018112 ID=Msa0242680;Name=Msa0242680
chr2_2 mRNA 19018112 19021345 19018112 ID=Msa0242680-mRNA-1;Parent=Msa0242680;Name=Msa0242680-mRNA-1;_AED=0.17;_eAED=0.17;_QI=128|0.75|0.6|1|1|1|5|337|228
chr2_2 exon 19018112 19018306 19018112 ID=Msa0242680-mRNA-1:exon:7762;Parent=Msa0242680-mRNA-1
chr2_2 exon 19018406 19018560 19018406 ID=Msa0242680-mRNA-1:exon:7763;Parent=Msa0242680-mRNA-1
chr2_2 exon 19019584 19019680 19019584 ID=Msa0242680-mRNA-1:exon:7764;Parent=Msa0242680-mRNA-1
chr2_2 exon 19020174 19020435 19020174 ID=Msa0242680-mRNA-1:exon:7765;Parent=Msa0242680-mRNA-1
chr2_2 exon 19020903 19021345 19020903 ID=Msa0242680-mRNA-1:exon:7766;Parent=Msa0242680-mRNA-1
chr2_2 five_prime_UTR 19018112 19018239 19018112 ID=Msa0242680-mRNA-1:five_prime_utr;Parent=Msa0242680-mRNA-1
chr2_2 CDS 19018240 19018306 19018240 ID=Msa0242680-mRNA-1:cds;Parent=Msa0242680-mRNA-1
chr2_2 CDS 19018406 19018560 19018406 ID=Msa0242680-mRNA-1:cds;Parent=Msa0242680-mRNA-1
chr2_2 CDS 19019584 19019680 19019584 ID=Msa0242680-mRNA-1:cds;Parent=Msa0242680-mRNA-1
chr2_2 CDS 19020174 19020435 19020174 ID=Msa0242680-mRNA-1:cds;Parent=Msa0242680-mRNA-1
chr2_2 CDS 19020903 19021008 19020903 ID=Msa0242680-mRNA-1:cds;Parent=Msa0242680-mRNA-1
chr2_2 three_prime_UTR 19021009 19021345 19021009 ID=Msa0242680-mRNA-1:three_prime_utr;Parent=Msa0242680-mRNA-1
Gene Sequence

>Msa0242680

ATGGACTCTGATTCATGGATCTCTTCTCGTCTCTCTAACTCTTCACGCCGTTACTATTCTCGATCCGATCTGTTTTTGGGTGGAAATGATGATGCTGAACCTGGTGGTGGTGGTGATGATTTAAGGGCTGAATATCTTTGCCCTTTTTGTGCTGAAGATTATGATGTTGTTTCTCTTTGTTGTCACATTGATGAAGAACATCCTCTTCAAGCTAACACTGGGGTGTGTCCTGCTTGTGGGCAAAAAGTGGGGATGGATCTTGTTGCACATATTACCACTCAACATGCAAAGTTTTTCAAAATATCCTTTTTGAAAGTTGAAGTTTACGTGCAGCGTAAAAGGAGGGTGAGGAAAGGAGTCACTAACTCAACGTTATTTAGAAAAGAGCTGAGGGAAGCAGGATTGCATTCTCTTCTTGGAGGTTCTTCGTCCACAGCTTCCTCCAATTCCGAACCTGATACTTTGTTGCAATCGTTTATTTTTAACCCAGTTGTTGGTGACGAAGCTGTGAGCGAACAATCTAATTCTTCCATTGAAGCTGCCATAGTAAACGATAGCTCGAAAGATGATTTCGTGGAAAGAAAACCACAAGTACAGCTTTCCGACGAGGATCGAGTAGAGAAGACACGAAGGTTTGATTTCGTGCAAGGGCTGCTGATGTCCACCATTCTTGATGATGAGTTATAA

Protein sequence

>Msa0242680

MDSDSWISSRLSNSSRRYYSRSDLFLGGNDDAEPGGGGDDLRAEYLCPFCAEDYDVVSLCCHIDEEHPLQANTGVCPACGQKVGMDLVAHITTQHAKFFKISFLKVEVYVQRKRRVRKGVTNSTLFRKELREAGLHSLLGGSSSTASSNSEPDTLLQSFIFNPVVGDEAVSEQSNSSIEAAIVNDSSKDDFVERKPQVQLSDEDRVEKTRRFDFVQGLLMSTILDDEL*