AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462420 MtrunA17_Chr3g0131351 97.285 884 20 2 51 930 75 958 0.0 1765
Msa0462420 MtrunA17_Chr3g0131711 47.241 870 411 15 63 925 79 907 0.0 752
Msa0462420 MtrunA17_Chr3g0134631 46.007 889 432 14 44 925 65 912 0.0 742
Msa0462420 MtrunA17_Chr8g0385811 45.894 889 433 14 44 925 64 911 0.0 740
Msa0462420 MtrunA17_Chr7g0218421 37.900 1000 481 23 12 929 10 951 0.0 613
Msa0462420 MtrunA17_Chr6g0454071 38.816 912 441 16 77 920 82 944 0.0 601
Msa0462420 MtrunA17_Chr3g0137071 43.497 715 328 11 266 916 247 949 0.0 572
Msa0462420 MtrunA17_Chr4g0061371 43.593 718 323 13 268 922 162 860 0.0 561
Msa0462420 MtrunA17_Chr7g0225161 42.120 736 340 15 254 923 145 860 3.73e-173 527
Msa0462420 MtrunA17_Chr3g0102771 48.094 341 166 5 588 926 454 785 2.73e-103 341
Msa0462420 MtrunA17_Chr3g0102771 32.520 492 282 7 75 543 1 465 2.07e-67 241
Msa0462420 MtrunA17_Chr3g0135231 35.185 594 303 18 49 623 56 586 2.58e-84 285
Msa0462420 MtrunA17_Chr3g0135231 52.688 93 34 1 752 844 568 650 8.10e-20 94.7
Msa0462420 MtrunA17_Chr2g0329561 37.500 408 227 5 517 923 76 456 3.08e-80 268
Msa0462420 MtrunA17_Chr2g0277781 42.712 295 152 4 596 888 2 281 1.36e-72 241
Msa0462420 MtrunA17_Chr1g0188061 46.429 140 64 2 673 812 221 349 5.47e-29 119
Msa0462420 MtrunA17_Chr7g0260931 52.809 89 42 0 588 676 6 94 1.33e-24 99.0
Msa0462420 MtrunA17_Chr2g0277771 36.184 152 81 3 773 923 1 137 3.61e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462420 AT5G51070.1 63.870 894 307 9 53 937 56 942 0.0 1137
Msa0462420 AT5G50920.1 46.469 878 391 14 70 925 89 909 0.0 749
Msa0462420 AT3G48870.2 46.458 861 409 14 74 925 82 899 0.0 736
Msa0462420 AT3G48870.1 46.458 861 409 14 74 925 113 930 0.0 735
Msa0462420 AT3G48870.4 46.458 861 409 14 74 925 113 930 0.0 735
Msa0462420 AT3G48870.3 46.458 861 409 14 74 925 113 930 0.0 735
Msa0462420 AT5G15450.1 39.384 909 427 17 77 916 80 933 0.0 607
Msa0462420 AT2G25140.1 43.604 727 336 11 266 928 238 954 0.0 587
Msa0462420 AT1G74310.1 42.958 710 326 13 268 917 162 852 0.0 553
Msa0462420 AT1G74310.2 43.368 671 301 13 268 878 162 813 4.67e-173 524
Msa0462420 AT4G14670.1 40.711 506 228 9 269 713 128 622 8.92e-107 344
Msa0462420 AT3G45450.1 30.061 326 179 9 165 462 5 309 1.64e-31 127

Find 233 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGAACTGCAGCCTTTA+TGG 0.098364 3_3:-61447434 None:intergenic
TCTTTGGCTGCATGCTATTT+TGG 0.134909 3_3:+61448179 Msa0462420:CDS
TAACATTCTTCTTCAATTAA+TGG 0.179501 3_3:+61448556 Msa0462420:CDS
GCAGCAGCAAATCAAATATT+TGG 0.183562 3_3:-61449371 None:intergenic
TCAAACAAAACCACAGTAAA+TGG 0.209228 3_3:-61448503 None:intergenic
TTAACTATGGTAAGTGATTA+TGG 0.209696 3_3:-61443145 None:intergenic
AACTAACAAGTTAGACATTT+TGG 0.211920 3_3:+61442992 Msa0462420:five_prime_UTR
ACTTGGAAGGGGTCAGTTTC+AGG 0.235139 3_3:+61445984 Msa0462420:CDS
CTAAAAGCCCGGATGATTAT+TGG 0.258261 3_3:+61447581 Msa0462420:CDS
TGACACTATCTTCATTGATT+TGG 0.258424 3_3:+61449575 Msa0462420:CDS
GACAACCGGGAGGGGAAATA+AGG 0.261671 3_3:+61445924 Msa0462420:CDS
GTTCAGGATCAACAAAATTA+TGG 0.267481 3_3:-61443764 None:intergenic
GTTCTGCTAGAATTCTTTAT+AGG 0.277808 3_3:+61443823 Msa0462420:CDS
CATTCAGTGAGCAAGTTATT+AGG 0.278138 3_3:+61448416 Msa0462420:CDS
TCTATCCTGTTGAGCAGTTC+TGG 0.284706 3_3:-61449011 None:intergenic
TGTTCAGTCCACGCTTAAAA+TGG 0.298769 3_3:+61447618 Msa0462420:CDS
GGAAGGAAGAAAGAAGAAAA+AGG 0.315182 3_3:-61443070 None:intergenic
AGAAGAATGTTAAATATATC+TGG 0.315702 3_3:-61448545 None:intergenic
CCAGCTTCACCCAGAAGAAT+TGG 0.326428 3_3:-61445428 None:intergenic
TCAACTTCTCGGCCAATAAC+TGG 0.328094 3_3:-61445359 None:intergenic
GGGCTGATTGATCCAGTTAT+TGG 0.329565 3_3:+61445347 Msa0462420:CDS
TTCTTTGAACTTCAACTTCT+CGG 0.329689 3_3:-61445370 None:intergenic
GTTAGACATGAGTGAATATA+TGG 0.330047 3_3:+61448388 Msa0462420:CDS
GCCACAGCTGCCAACTGATC+TGG 0.335594 3_3:-61445051 None:intergenic
CTGTAAAGTCAAAGATGTTT+TGG 0.335668 3_3:+61449725 Msa0462420:three_prime_UTR
ACCAACTACGTTGATGATAA+TGG 0.339054 3_3:+61443651 Msa0462420:CDS
CACGGCGGTTTCAACCTGTT+TGG 0.339833 3_3:+61446954 Msa0462420:CDS
CTTGGATGTAGGACTATTAA+TGG 0.344112 3_3:+61445683 Msa0462420:CDS
TGATGCAATTAAGATACTTA+TGG 0.355715 3_3:+61447360 Msa0462420:CDS
GAGATCTCGAGTCGGCCTTC+GGG 0.356437 3_3:+61448085 Msa0462420:CDS
CTTAAATATTATGGTGCATC+TGG 0.366184 3_3:+61447733 Msa0462420:CDS
TCAGCAGTGAGCTGCTGAAC+TGG 0.366254 3_3:-61447969 None:intergenic
GACTGGCAATTCTTATTTCT+CGG 0.376702 3_3:+61445477 Msa0462420:CDS
GAGAGCATGCTTAAATATTA+TGG 0.380084 3_3:+61447724 Msa0462420:CDS
TCTATATCACAAAGGCGTTC+TGG 0.385165 3_3:+61445150 Msa0462420:CDS
GACAAACCAACATCATATAA+TGG 0.386817 3_3:+61448945 Msa0462420:CDS
CTCACTGCCCGTGCAAGTGT+TGG 0.393374 3_3:+61445326 Msa0462420:CDS
TTCGTCCAGAACTGCTCAAC+AGG 0.394949 3_3:+61449006 Msa0462420:CDS
ATGAGGTCAATAGCTTTATC+AGG 0.395259 3_3:-61447487 None:intergenic
TTGAGAGTGAAAATTAACTA+TGG 0.395355 3_3:-61443158 None:intergenic
GGTGGTTGCGGTGGTGGAAG+AGG 0.395523 3_3:-61443266 None:intergenic
TTACTATTCTGTGGCCCAAC+TGG 0.398909 3_3:+61448131 Msa0462420:CDS
TTCAGGAAACGGACATGATA+AGG 0.400120 3_3:+61448366 Msa0462420:intron
CAAACACTAAGCTAACAAAT+AGG 0.400507 3_3:-61449750 None:intergenic
GGTTGTGGTGGTTGCGGTGG+TGG 0.402290 3_3:-61443272 None:intergenic
CCAATTCTTCTGGGTGAAGC+TGG 0.408826 3_3:+61445428 Msa0462420:CDS
CTATGAGACCAAGCATGATA+TGG 0.410636 3_3:-61443527 None:intergenic
CTTCTTCAATTAATGGAAGA+TGG 0.413133 3_3:+61448563 Msa0462420:CDS
CTTGTTCAATCAGGGACAAC+CGG 0.414239 3_3:+61445910 Msa0462420:CDS
GTTCACACACTTGTTCAATC+AGG 0.415130 3_3:+61445901 Msa0462420:CDS
GCGGTGGTGGAAGAGGGTTC+CGG 0.418091 3_3:-61443259 None:intergenic
AAACTAAGGGAACGTGTGAT+TGG 0.431441 3_3:+61448023 Msa0462420:CDS
AACTGAACTAGCAAAGTCTT+TGG 0.432809 3_3:+61448163 Msa0462420:CDS
TGGCCATCTTACGGATTCTC+AGG 0.433088 3_3:+61448583 Msa0462420:CDS
ATTTCTCTCCAATAATCATC+CGG 0.433200 3_3:-61447589 None:intergenic
AGAGATCTCGAGTCGGCCTT+CGG 0.433232 3_3:+61448084 Msa0462420:CDS
TTCTGGGTGAAGCTGGAGTT+GGG 0.435845 3_3:+61445435 Msa0462420:CDS
AGGAAGGAATAGAGTGAGAA+TGG 0.436220 3_3:-61443038 None:intergenic
GATGCAATTAAGATACTTAT+GGG 0.437666 3_3:+61447361 Msa0462420:CDS
CTTCTGGGTGAAGCTGGAGT+TGG 0.438875 3_3:+61445434 Msa0462420:CDS
CAGCAAGATACATAGTTGAT+AGG 0.439208 3_3:+61447458 Msa0462420:CDS
AGTCAAGGACCTTGTCTGTA+AGG 0.440929 3_3:+61449446 Msa0462420:CDS
CTAACTTGTTAGTTATTGCT+TGG 0.444081 3_3:-61442983 None:intergenic
AACAGCTATTGCAGAGGGAC+TGG 0.445401 3_3:+61445460 Msa0462420:CDS
CTCGGCTCATCAATCCAAAC+AGG 0.446079 3_3:-61446968 None:intergenic
TCACAAAGGCGTTCTGGTGC+AGG 0.451507 3_3:+61445156 Msa0462420:CDS
TGCTGCTGCAAGACGTGAAA+AGG 0.453555 3_3:+61449385 Msa0462420:CDS
TCACTGCCCGTGCAAGTGTT+GGG 0.455417 3_3:+61445327 Msa0462420:CDS
AAGAAGTCTTCTGTTAGATC+TGG 0.455467 3_3:+61447995 Msa0462420:CDS
AGCCAGGTTATGTGTCCAAT+GGG 0.456669 3_3:+61445115 Msa0462420:CDS
TTCTGTGGCCCAACTGGCGT+TGG 0.456768 3_3:+61448137 Msa0462420:CDS
GCAAGCAATGCTTCAGCCAA+TGG 0.458378 3_3:-61449534 None:intergenic
GTGAGTGAATGCGGCGGAAG+CGG 0.460759 3_3:-61443237 None:intergenic
GGGGTCTAGTGCCATTGCTA+AGG 0.463476 3_3:+61448887 Msa0462420:CDS
AAAAGCAATCCAATTCTTCT+GGG 0.464852 3_3:+61445419 Msa0462420:CDS
ACAGAATAGTAAAGTTGCTA+TGG 0.465089 3_3:-61448120 None:intergenic
ACAGTTGCTTCCCTCTGGTC+AGG 0.465119 3_3:+61447942 Msa0462420:CDS
AATGGAAGATGGCCATCTTA+CGG 0.465250 3_3:+61448574 Msa0462420:CDS
CACCTCAAAATCAATTCCTC+GGG 0.465538 3_3:-61449415 None:intergenic
TGAGTATGCGGTGGCGGTTG+TGG 0.466946 3_3:-61443287 None:intergenic
TTCAATCCATTATATGATGT+TGG 0.467114 3_3:-61448951 None:intergenic
ATAAAAGATATAATAGAGTC+AGG 0.467220 3_3:+61445753 Msa0462420:CDS
GCTAGAGATGGTAGAGAGCC+AGG 0.468940 3_3:+61445099 Msa0462420:CDS
TAGATCTGGATAATAAACTA+AGG 0.469027 3_3:+61448009 Msa0462420:CDS
GTGGTTGCGGTGGTGGAAGA+GGG 0.470187 3_3:-61443265 None:intergenic
CTTCTTCATCACTTAACCCA+TGG 0.471963 3_3:+61443194 Msa0462420:exon
GACAAAACGTGTCATGTCCT+TGG 0.472119 3_3:+61445665 Msa0462420:intron
GATGTAGGACTATTAATGGC+TGG 0.472478 3_3:+61445687 Msa0462420:CDS
TAAAGTTGCTATGGGTCTAC+CGG 0.474304 3_3:-61448111 None:intergenic
CCCAGATCAGTTGGCAGCTG+TGG 0.474446 3_3:+61445050 Msa0462420:CDS
TGCTTAAACCTTCACTTGGA+AGG 0.478401 3_3:+61445971 Msa0462420:CDS
CAATCAGGGACAACCGGGAG+GGG 0.479272 3_3:+61445916 Msa0462420:CDS
CTAATAACTTGCTCACTGAA+TGG 0.479808 3_3:-61448415 None:intergenic
GGGAGGGGAAATAAGGGTTC+TGG 0.480130 3_3:+61445931 Msa0462420:CDS
CTACCACTATTGATGAATAC+AGG 0.481152 3_3:+61446903 Msa0462420:CDS
GCAACTGTTGCTATATGATC+AGG 0.483203 3_3:-61447927 None:intergenic
ACAACCGGGAGGGGAAATAA+GGG 0.483340 3_3:+61445925 Msa0462420:CDS
GTTATGTTGGTTATGGAGAA+GGG 0.484795 3_3:+61448450 Msa0462420:CDS
TCCATTATCATCAACGTAGT+TGG 0.485415 3_3:-61443652 None:intergenic
TCTGTGGCCCAACTGGCGTT+GGG 0.486174 3_3:+61448138 Msa0462420:CDS
ACTGGCAATTCTTATTTCTC+GGG 0.487942 3_3:+61445478 Msa0462420:CDS
CAAGCAATGCTTCAGCCAAT+GGG 0.488172 3_3:-61449533 None:intergenic
GAGACAAAACGTTCTCAAAA+CGG 0.488248 3_3:+61443561 Msa0462420:CDS
TCGTTCGAATATTGAAGTTA+CGG 0.489169 3_3:-61443424 None:intergenic
TCTCTTCACAGATCTAGAAA+TGG 0.490279 3_3:-61448066 None:intergenic
AGCGGTTGGAAGTGAGAGTT+GGG 0.490437 3_3:-61443219 None:intergenic
GTACAATGGTTCATTACTCA+AGG 0.490996 3_3:-61449666 None:intergenic
AGAACCCTTATTTCCCCTCC+CGG 0.496013 3_3:-61445929 None:intergenic
GATAGACACACCAATAGAAA+AGG 0.496212 3_3:-61445512 None:intergenic
TATAACAAGGGTGTTACCAT+TGG 0.496267 3_3:-61449601 None:intergenic
GCTTAAACCTTCACTTGGAA+GGG 0.497310 3_3:+61445972 Msa0462420:CDS
ATATACAGAAGATGCCATAA+AGG 0.500415 3_3:+61447420 Msa0462420:CDS
GGTGGCGGTTGTGGTGGTTG+CGG 0.500601 3_3:-61443278 None:intergenic
TCTCCATAACCAACATAACC+TGG 0.501731 3_3:-61448446 None:intergenic
GAGGTCTAGCACCATATGTT+GGG 0.502338 3_3:-61449479 None:intergenic
GGATCTGCCGCTAAAACAAA+AGG 0.502472 3_3:+61445177 Msa0462420:CDS
CCACAGCTGCCAACTGATCT+GGG 0.502623 3_3:-61445050 None:intergenic
TAGCAACAGTTGCTTCCCTC+TGG 0.507727 3_3:+61447937 Msa0462420:CDS
GTACCAAAAGAAAACGGAAC+AGG 0.507840 3_3:-61443696 None:intergenic
ATGTAGGACTATTAATGGCT+GGG 0.511098 3_3:+61445688 Msa0462420:CDS
AAGCGGTTGGAAGTGAGAGT+TGG 0.513262 3_3:-61443220 None:intergenic
AAACTTAATTGCAAACCCAT+TGG 0.514028 3_3:+61449518 Msa0462420:CDS
GAAGGCTATGACCCAACATA+TGG 0.515298 3_3:+61449468 Msa0462420:CDS
TACGCACACCATATCATGCT+TGG 0.519026 3_3:+61443519 Msa0462420:CDS
GAAAGAAACGAGAGAGAAGG+TGG 0.519655 3_3:-61443310 None:intergenic
AAGCCTGTATTCATCAATAG+TGG 0.519791 3_3:-61446906 None:intergenic
CGAGTCGGCCTTCGGGATCC+CGG 0.521425 3_3:+61448092 Msa0462420:CDS
TTCATTGATTTGGATGCCAA+TGG 0.522612 3_3:+61449585 Msa0462420:CDS
CTTCCGCCGCATTCACTCAC+CGG 0.523861 3_3:+61443240 Msa0462420:CDS
ATCTGAAATGAAGAAACCTA+TGG 0.528568 3_3:-61448922 None:intergenic
CATATGGTGCTAGACCTCTC+AGG 0.531368 3_3:+61449484 Msa0462420:CDS
ACACCTCAAAATCAATTCCT+CGG 0.532915 3_3:-61449416 None:intergenic
TCATCCCCTTGAAAAGCCAC+AGG 0.534299 3_3:+61449049 Msa0462420:CDS
GCATGATATGGTGTGCGTAA+AGG 0.534330 3_3:-61443515 None:intergenic
TACTTCCTGCTTCATCAATG+AGG 0.539893 3_3:-61447504 None:intergenic
GTGAATGCGGCGGAAGCGGT+TGG 0.540013 3_3:-61443233 None:intergenic
AGAGGTCTAGCACCATATGT+TGG 0.540703 3_3:-61449480 None:intergenic
GGCGGTTGTGGTGGTTGCGG+TGG 0.541218 3_3:-61443275 None:intergenic
GGTTATGTTGGTTATGGAGA+AGG 0.541808 3_3:+61448449 Msa0462420:CDS
GGGTCTAGTGCCATTGCTAA+GGG 0.542537 3_3:+61448888 Msa0462420:CDS
AGGTGGTGAGTATGCGGTGG+CGG 0.542666 3_3:-61443293 None:intergenic
CTTAAACCTTCACTTGGAAG+GGG 0.543263 3_3:+61445973 Msa0462420:CDS
ATTGACCTCATTGATGAAGC+AGG 0.544458 3_3:+61447499 Msa0462420:CDS
CAATCAGCCCAACACTTGCA+CGG 0.544552 3_3:-61445334 None:intergenic
AAGTGAGAGTTGGGAACCAT+GGG 0.544733 3_3:-61443210 None:intergenic
AAAAGAGAGAGGAGAGCTAG+AGG 0.545345 3_3:+61445713 Msa0462420:CDS
TTGCATACTCTCTAAAAGCC+CGG 0.546522 3_3:+61447570 Msa0462420:CDS
AAGGACCTTGTCTGTAAGGA+AGG 0.546851 3_3:+61449450 Msa0462420:CDS
AAAATCAATTCCTCGGGGCA+TGG 0.547293 3_3:-61449409 None:intergenic
CGTGTCATGTCCTTGGATGT+AGG 0.548440 3_3:+61445672 Msa0462420:CDS
ATATAAAGTGCAACCTCACT+CGG 0.551522 3_3:-61446986 None:intergenic
AAACCTGAGAATCCGTAAGA+TGG 0.553283 3_3:-61448586 None:intergenic
TGAGTCAAGTATGAGTTCAC+TGG 0.553540 3_3:-61447767 None:intergenic
CGTTTAGTACCAAAAGAAAA+CGG 0.553800 3_3:-61443702 None:intergenic
AACTGACCCCTTCCAAGTGA+AGG 0.554059 3_3:-61445979 None:intergenic
CAGAATAGTAAAGTTGCTAT+GGG 0.554764 3_3:-61448119 None:intergenic
GAGCCAGGTTATGTGTCCAA+TGG 0.555649 3_3:+61445114 Msa0462420:CDS
CGGGTCAAACCCAGATCAGT+TGG 0.556987 3_3:+61445041 Msa0462420:CDS
TACTCAAGGGTGACTTGTGT+CGG 0.559111 3_3:-61449652 None:intergenic
CTCCATAACCAACATAACCT+GGG 0.561726 3_3:-61448445 None:intergenic
TTTCTCTCCAATAATCATCC+GGG 0.562344 3_3:-61447588 None:intergenic
AAAGCAACGAAAATATGTTC+AGG 0.563495 3_3:-61443780 None:intergenic
AACTGGAATTCCTGACCAGA+GGG 0.563796 3_3:-61447952 None:intergenic
GAAGTGAGAGTTGGGAACCA+TGG 0.564089 3_3:-61443211 None:intergenic
CTTCTGTATATCTGCACTTG+TGG 0.566189 3_3:-61447408 None:intergenic
TTCACACACTTGTTCAATCA+GGG 0.566651 3_3:+61445902 Msa0462420:CDS
ACCATTGTACAGAAGTAGCC+TGG 0.568735 3_3:+61449679 Msa0462420:three_prime_UTR
GATGAAAGAAACGAGAGAGA+AGG 0.572401 3_3:-61443313 None:intergenic
GCTTTGATGAAAGTTGATGA+TGG 0.573069 3_3:+61443798 Msa0462420:CDS
AATTTGCTTAAACCTTCACT+TGG 0.579870 3_3:+61445967 Msa0462420:CDS
AATCAGCCCAACACTTGCAC+GGG 0.580208 3_3:-61445333 None:intergenic
GATCAAGCTGATTTATAACA+AGG 0.584174 3_3:-61449614 None:intergenic
TTGTTCAATCAGGGACAACC+GGG 0.588641 3_3:+61445911 Msa0462420:CDS
TATGTTGGTTATGGAGAAGG+GGG 0.590352 3_3:+61448452 Msa0462420:CDS
TCAATCAGGGACAACCGGGA+GGG 0.591333 3_3:+61445915 Msa0462420:CDS
AGGGTTCCGGTGAGTGAATG+CGG 0.591951 3_3:-61443246 None:intergenic
AAGGGTCGACACAACTCCAT+AGG 0.595796 3_3:+61448906 Msa0462420:CDS
GGAACGTGTGATTGGACAAG+AGG 0.597583 3_3:+61448031 Msa0462420:CDS
CTTGCTGAAAAGTGCAAGGA+AGG 0.599268 3_3:+61449552 Msa0462420:CDS
GTTTGCAATTAAGTTTACAA+TGG 0.599993 3_3:-61449511 None:intergenic
TGTAGGACTATTAATGGCTG+GGG 0.603871 3_3:+61445689 Msa0462420:CDS
AGATCTGGATAATAAACTAA+GGG 0.604041 3_3:+61448010 Msa0462420:CDS
TGAGGTGTCTGAATCAGTCA+AGG 0.607039 3_3:+61449431 Msa0462420:CDS
TGATGAAGAAGAAACTTGCA+TGG 0.607380 3_3:-61443182 None:intergenic
TGGGTCTACCGGGATCCCGA+AGG 0.609108 3_3:-61448100 None:intergenic
GGTGGTGATGACTTCAAATG+TGG 0.611159 3_3:+61448866 Msa0462420:CDS
CATTAATAGTCCTACATCCA+AGG 0.615573 3_3:-61445682 None:intergenic
GCTCAACAGGATAGATGAAG+TGG 0.616515 3_3:+61449019 Msa0462420:CDS
ATAGCAACTTTACTATTCTG+TGG 0.617864 3_3:+61448122 Msa0462420:CDS
TAGAAGAAAACCATTTACTG+TGG 0.618481 3_3:+61448493 Msa0462420:CDS
ATATAATGGATTGAAATCGA+TGG 0.619461 3_3:+61448959 Msa0462420:CDS
TTATGGTGCATCTGGCATTG+AGG 0.619554 3_3:+61447741 Msa0462420:CDS
TTGGTTGAATCATTGAGATG+AGG 0.619768 3_3:-61443633 None:intergenic
CATAGCCTTCCTTACAGACA+AGG 0.620402 3_3:-61449455 None:intergenic
TACAATGGTTCATTACTCAA+GGG 0.620684 3_3:-61449665 None:intergenic
ACGTGTGATTGGACAAGAGG+AGG 0.625107 3_3:+61448034 Msa0462420:CDS
TGTTTGATTCTTATGTGATG+AGG 0.625400 3_3:+61449767 Msa0462420:three_prime_UTR
ATCAAGCTGATTTATAACAA+GGG 0.625901 3_3:-61449613 None:intergenic
TTGTACAGAAGTAGCCTGGT+AGG 0.629746 3_3:+61449683 Msa0462420:three_prime_UTR
AATGGCATACACGTCACTGA+AGG 0.631785 3_3:-61443020 None:intergenic
GTATGCGGTGGCGGTTGTGG+TGG 0.633005 3_3:-61443284 None:intergenic
GGGAAAACAGCTATTGCAGA+GGG 0.636174 3_3:+61445455 Msa0462420:CDS
GTGGTGATGACTTCAAATGT+GGG 0.637406 3_3:+61448867 Msa0462420:CDS
TTATGTTGGTTATGGAGAAG+GGG 0.637629 3_3:+61448451 Msa0462420:CDS
ATTGCTTGCTGAAAAGTGCA+AGG 0.637883 3_3:+61449548 Msa0462420:CDS
TTCAATCAGGGACAACCGGG+AGG 0.637993 3_3:+61445914 Msa0462420:CDS
AGTTACGGTGAACGTGAACG+TGG 0.638260 3_3:-61443409 None:intergenic
GACTTATATATACACCTACC+AGG 0.638917 3_3:-61449697 None:intergenic
GAACTGGAATTCCTGACCAG+AGG 0.642699 3_3:-61447953 None:intergenic
ATGGCTGGGGCAAAAGAGAG+AGG 0.645640 3_3:+61445702 Msa0462420:CDS
AAAGTTGCTATGGGTCTACC+GGG 0.647341 3_3:-61448110 None:intergenic
GAGAGAAGGTGGTGAGTATG+CGG 0.647717 3_3:-61443299 None:intergenic
TGCTCTATCACAATTCTGCG+TGG 0.649091 3_3:+61445301 Msa0462420:CDS
TTTACAATGGCTCTCCTGAG+AGG 0.650300 3_3:-61449498 None:intergenic
CCAGGTTATGTGTCCAATGG+GGG 0.650317 3_3:+61445117 Msa0462420:CDS
CGATGGTAATTGAAGAACTG+AGG 0.650720 3_3:+61448976 Msa0462420:CDS
TCCATAACCAACATAACCTG+GGG 0.651186 3_3:-61448444 None:intergenic
GCCAGGTTATGTGTCCAATG+GGG 0.659821 3_3:+61445116 Msa0462420:CDS
AAAAGGATAAGGCTTTGGCA+CGG 0.663550 3_3:+61446936 Msa0462420:CDS
TTGGATTGATGAGCCGAGTG+AGG 0.663720 3_3:+61446973 Msa0462420:CDS
ACCAGGCTACTTCTGTACAA+TGG 0.670061 3_3:-61449680 None:intergenic
AGAAGGTGGTGAGTATGCGG+TGG 0.674042 3_3:-61443296 None:intergenic
GTTGTGTCGACCCTTAGCAA+TGG 0.675286 3_3:-61448898 None:intergenic
TGGGAAAACAGCTATTGCAG+AGG 0.677479 3_3:+61445454 Msa0462420:CDS
ACAACAAATCTATATCACAA+AGG 0.686685 3_3:+61445142 Msa0462420:CDS
TGGTGATGACTTCAAATGTG+GGG 0.688027 3_3:+61448868 Msa0462420:CDS
AGGATAAGGCTTTGGCACGG+CGG 0.694664 3_3:+61446939 Msa0462420:CDS
CAACAGGATAGATGAAGTGG+TGG 0.695003 3_3:+61449022 Msa0462420:CDS
ACCTCAAAATCAATTCCTCG+GGG 0.719499 3_3:-61449414 None:intergenic
GTTCCGGTGAGTGAATGCGG+CGG 0.720093 3_3:-61443243 None:intergenic
TCTGTGAAGAGATCTCGAGT+CGG 0.722132 3_3:+61448077 Msa0462420:CDS
GTGAAAAGGACCATGCCCCG+AGG 0.751275 3_3:+61449399 Msa0462420:CDS
CCATAACCAACATAACCTGG+GGG 0.752062 3_3:-61448443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAACATAAAAATTTA+GGG - chr3_3:61448796-61448815 None:intergenic 10.0%
!! AACAATAAACATAAAAATTT+AGG - chr3_3:61448797-61448816 None:intergenic 10.0%
!! ACTTATAATATATTTCCATT+TGG + chr3_3:61443871-61443890 Msa0462420:intron 15.0%
!! CAATTTAAATTCAACTTTAA+AGG + chr3_3:61444320-61444339 Msa0462420:intron 15.0%
!! TAGTTTGAAAAATATTCTTT+GGG + chr3_3:61444770-61444789 Msa0462420:intron 15.0%
!! AACAAAAGAAAAACAAATAT+TGG - chr3_3:61444884-61444903 None:intergenic 15.0%
!! AGATAGAAACATATTAATTA+AGG - chr3_3:61445600-61445619 None:intergenic 15.0%
!! TCTTTGCAATAAATAATTAA+GGG - chr3_3:61447143-61447162 None:intergenic 15.0%
!! TTAAGATTGTTATAGAAAAA+AGG + chr3_3:61447195-61447214 Msa0462420:intron 15.0%
!! AGATCAAATTATGATTAAAA+TGG - chr3_3:61447311-61447330 None:intergenic 15.0%
!!! TTTATTTAGTCATTTTTGTT+TGG + chr3_3:61449169-61449188 Msa0462420:intron 15.0%
!! TTAAATTTAACTGCTTAAAA+CGG - chr3_3:61449216-61449235 None:intergenic 15.0%
!! ATATATTTCCATTTGGTATT+TGG + chr3_3:61443878-61443897 Msa0462420:intron 20.0%
!! AACTTATCAAAGTACATATT+TGG - chr3_3:61444425-61444444 None:intergenic 20.0%
!! ATATGTACTTTGATAAGTTT+CGG + chr3_3:61444426-61444445 Msa0462420:intron 20.0%
!! CTAGTTTGAAAAATATTCTT+TGG + chr3_3:61444769-61444788 Msa0462420:intron 20.0%
!!! TTTGTTTTTCTTTTGTTTTG+TGG + chr3_3:61444887-61444906 Msa0462420:intron 20.0%
!!! GTTTTATGATTTGATTTTGA+TGG + chr3_3:61445221-61445240 Msa0462420:intron 20.0%
!!! TTAATATGTTTCTATCTACT+TGG + chr3_3:61445603-61445622 Msa0462420:intron 20.0%
!!! CTTTTATTAATTTTGTAACG+CGG - chr3_3:61445740-61445759 None:intergenic 20.0%
!! ATAAAAGATATAATAGAGTC+AGG + chr3_3:61445753-61445772 Msa0462420:CDS 20.0%
!! ATAAATATTCAAGTATCACT+TGG - chr3_3:61446052-61446071 None:intergenic 20.0%
!!! TCCATATATTTTCATGTATA+AGG + chr3_3:61446496-61446515 Msa0462420:intron 20.0%
!!! TTTTTGTAATTTTAATTGGG+AGG + chr3_3:61446621-61446640 Msa0462420:intron 20.0%
!!! TTTTGTAATTTTAATTGGGA+GGG + chr3_3:61446622-61446641 Msa0462420:intron 20.0%
!!! ATGAATTTTTCTTGAATAGT+TGG + chr3_3:61446728-61446747 Msa0462420:intron 20.0%
!!! TGATCATTTTTGTATAAGAT+GGG + chr3_3:61446786-61446805 Msa0462420:intron 20.0%
!! CTCTTTGCAATAAATAATTA+AGG - chr3_3:61447144-61447163 None:intergenic 20.0%
!!! TTTTTTTGGCATTAATAATG+AGG + chr3_3:61448228-61448247 Msa0462420:intron 20.0%
!! AGAAGAATGTTAAATATATC+TGG - chr3_3:61448548-61448567 None:intergenic 20.0%
!! TAACATTCTTCTTCAATTAA+TGG + chr3_3:61448556-61448575 Msa0462420:CDS 20.0%
!!! TTTGAAAAACTTGTTCTAAT+AGG + chr3_3:61448815-61448834 Msa0462420:intron 20.0%
!!! TTGAAAAACTTGTTCTAATA+GGG + chr3_3:61448816-61448835 Msa0462420:intron 20.0%
!! AGTTTCATTTAAAAATGCAT+TGG + chr3_3:61448845-61448864 Msa0462420:CDS 20.0%
!! AAGCAGTTAAATTTAAATAC+TGG + chr3_3:61449220-61449239 Msa0462420:intron 20.0%
!! AACTAACAAGTTAGACATTT+TGG + chr3_3:61442992-61443011 Msa0462420:five_prime_UTR 25.0%
!!! TTAGATTTTGAAAGTGTTGA+GGG - chr3_3:61443095-61443114 None:intergenic 25.0%
!!! TTTAGATTTTGAAAGTGTTG+AGG - chr3_3:61443096-61443115 None:intergenic 25.0%
! TTAACTATGGTAAGTGATTA+TGG - chr3_3:61443148-61443167 None:intergenic 25.0%
! TTGAGAGTGAAAATTAACTA+TGG - chr3_3:61443161-61443180 None:intergenic 25.0%
!! GAAGAATTTTGCTTCTTTTT+CGG - chr3_3:61443484-61443503 None:intergenic 25.0%
!!! ATTTGGAGTATTGTTGTTTT+TGG + chr3_3:61443895-61443914 Msa0462420:intron 25.0%
! TGGTTCAAATAAGTTTCTTT+AGG - chr3_3:61443988-61444007 None:intergenic 25.0%
! AGAAACTTATTTGAACCAAA+TGG + chr3_3:61443990-61444009 Msa0462420:intron 25.0%
! ATAACCAAGAAACAAATGTT+GGG + chr3_3:61444098-61444117 Msa0462420:intron 25.0%
!!! GAACTTTTTAAGAATAATGC+TGG + chr3_3:61444152-61444171 Msa0462420:intron 25.0%
! CAAAATCAATCTCAATTTGT+CGG + chr3_3:61444674-61444693 Msa0462420:intron 25.0%
!! TTCTTTGGGCTAAAATTTTA+AGG + chr3_3:61444784-61444803 Msa0462420:intron 25.0%
! ACAACAAATCTATATCACAA+AGG + chr3_3:61445142-61445161 Msa0462420:CDS 25.0%
!! TTTTTCTCATATTCATTCTC+TGG + chr3_3:61445261-61445280 Msa0462420:intron 25.0%
! ACTAGCAATTGTTTATTTGA+TGG - chr3_3:61446091-61446110 None:intergenic 25.0%
!! CAGTTACTTTGAAAAATGTT+GGG - chr3_3:61446180-61446199 None:intergenic 25.0%
!! ACAGTTACTTTGAAAAATGT+TGG - chr3_3:61446181-61446200 None:intergenic 25.0%
! AAGTTGTCTTTATGAAATAC+TGG + chr3_3:61446257-61446276 Msa0462420:intron 25.0%
! AGTTGTCTTTATGAAATACT+GGG + chr3_3:61446258-61446277 Msa0462420:intron 25.0%
! GCCTTATACATGAAAATATA+TGG - chr3_3:61446500-61446519 None:intergenic 25.0%
! ATTCAAGAAAAATTCATCAG+AGG - chr3_3:61446725-61446744 None:intergenic 25.0%
! GTTCAATTATATTATGCAGT+CGG + chr3_3:61446750-61446769 Msa0462420:intron 25.0%
!!! GTGATCATTTTTGTATAAGA+TGG + chr3_3:61446785-61446804 Msa0462420:intron 25.0%
! TTATTCATAGTGACAAGTTA+TGG - chr3_3:61446856-61446875 None:intergenic 25.0%
! ATCAAATGTACCAAGTTTAT+TGG + chr3_3:61447227-61447246 Msa0462420:intron 25.0%
! TGATGCAATTAAGATACTTA+TGG + chr3_3:61447360-61447379 Msa0462420:CDS 25.0%
! GATGCAATTAAGATACTTAT+GGG + chr3_3:61447361-61447380 Msa0462420:CDS 25.0%
!!! GTGTTCTTTTTTCATCTTAA+AGG - chr3_3:61447545-61447564 None:intergenic 25.0%
! AAAAGAAAGAATTCTGCTTT+GGG - chr3_3:61447836-61447855 None:intergenic 25.0%
! TAGATCTGGATAATAAACTA+AGG + chr3_3:61448009-61448028 Msa0462420:CDS 25.0%
! AGATCTGGATAATAAACTAA+GGG + chr3_3:61448010-61448029 Msa0462420:CDS 25.0%
! GATGTGAATCTTAATTTACT+AGG + chr3_3:61448618-61448637 Msa0462420:intron 25.0%
! GAGAAAGTTTCATGTTTAAA+GGG - chr3_3:61448654-61448673 None:intergenic 25.0%
! AGAGAAAGTTTCATGTTTAA+AGG - chr3_3:61448655-61448674 None:intergenic 25.0%
! TTAAACATGAAACTTTCTCT+TGG + chr3_3:61448655-61448674 Msa0462420:intron 25.0%
! CATTTCTATATCTTCCTTTA+CGG + chr3_3:61448678-61448697 Msa0462420:intron 25.0%
! TTCATTTAAAAATGCATTGG+TGG + chr3_3:61448848-61448867 Msa0462420:CDS 25.0%
! TTCAATCCATTATATGATGT+TGG - chr3_3:61448954-61448973 None:intergenic 25.0%
!!! ATATAATGGATTGAAATCGA+TGG + chr3_3:61448959-61448978 Msa0462420:CDS 25.0%
! AGCATACACATAAAAAAACT+TGG - chr3_3:61449278-61449297 None:intergenic 25.0%
! GTTTGCAATTAAGTTTACAA+TGG - chr3_3:61449514-61449533 None:intergenic 25.0%
!! ATCAAGCTGATTTATAACAA+GGG - chr3_3:61449616-61449635 None:intergenic 25.0%
GAAAGAAGAAAAAGGAAGAA+AGG - chr3_3:61443065-61443084 None:intergenic 30.0%
!!! TAGATTTTGAAAGTGTTGAG+GGG - chr3_3:61443094-61443113 None:intergenic 30.0%
TCGTTCGAATATTGAAGTTA+CGG - chr3_3:61443427-61443446 None:intergenic 30.0%
CGTTTAGTACCAAAAGAAAA+CGG - chr3_3:61443705-61443724 None:intergenic 30.0%
GTTCAGGATCAACAAAATTA+TGG - chr3_3:61443767-61443786 None:intergenic 30.0%
AAAGCAACGAAAATATGTTC+AGG - chr3_3:61443783-61443802 None:intergenic 30.0%
GTTCTGCTAGAATTCTTTAT+AGG + chr3_3:61443823-61443842 Msa0462420:CDS 30.0%
ACAATACTCCAAATACCAAA+TGG - chr3_3:61443889-61443908 None:intergenic 30.0%
GTTTCTTGGTTATCATTGAT+TGG - chr3_3:61444091-61444110 None:intergenic 30.0%
GATAACCAAGAAACAAATGT+TGG + chr3_3:61444097-61444116 Msa0462420:intron 30.0%
TAGTCTGACAACCAATTAAA+TGG - chr3_3:61444246-61444265 None:intergenic 30.0%
ATGAACTATGTCATATTGTC+TGG - chr3_3:61444490-61444509 None:intergenic 30.0%
AGACAATATGACATAGTTCA+TGG + chr3_3:61444489-61444508 Msa0462420:intron 30.0%
CCAAAATACCATTTGTCTTA+CGG + chr3_3:61444598-61444617 Msa0462420:intron 30.0%
!!! TTGTCGGTGAAACAATTTTT+TGG + chr3_3:61444690-61444709 Msa0462420:intron 30.0%
!!! TGTCGGTGAAACAATTTTTT+GGG + chr3_3:61444691-61444710 Msa0462420:intron 30.0%
AAACTAGTTATGCAACTCAA+AGG - chr3_3:61444756-61444775 None:intergenic 30.0%
!!! CATTAGCTTTTTAAAGAGTG+TGG + chr3_3:61444837-61444856 Msa0462420:intron 30.0%
TTGCATACTAGCAACATTAA+TGG - chr3_3:61445008-61445027 None:intergenic 30.0%
TATGCAAATGATTTCAGACT+CGG + chr3_3:61445021-61445040 Msa0462420:intron 30.0%
!!! TTTCTTGCCTTTTGTTTTAG+CGG - chr3_3:61445187-61445206 None:intergenic 30.0%
!! GATTTGATTTTGATGGTTGA+AGG + chr3_3:61445228-61445247 Msa0462420:intron 30.0%
TTCTTTGAACTTCAACTTCT+CGG - chr3_3:61445373-61445392 None:intergenic 30.0%
!!! TTGGATTGCTTTTTGTCTTT+CGG - chr3_3:61445412-61445431 None:intergenic 30.0%
AAAAAGCAATCCAATTCTTC+TGG + chr3_3:61445418-61445437 Msa0462420:CDS 30.0%
AAAAGCAATCCAATTCTTCT+GGG + chr3_3:61445419-61445438 Msa0462420:CDS 30.0%
GAGTTGTGTTAATATATGTG+TGG + chr3_3:61445804-61445823 Msa0462420:intron 30.0%
! AATTTGCTTAAACCTTCACT+TGG + chr3_3:61445967-61445986 Msa0462420:CDS 30.0%
GCTAGTAACGTATAAGATTA+AGG + chr3_3:61446105-61446124 Msa0462420:intron 30.0%
ACGTATAAGATTAAGGTTAG+AGG + chr3_3:61446112-61446131 Msa0462420:intron 30.0%
CAAGATTAGCATTTAACATC+TGG + chr3_3:61446207-61446226 Msa0462420:intron 30.0%
! TTCTAGTACATGTAACCTTT+TGG - chr3_3:61446380-61446399 None:intergenic 30.0%
AGTTATATTCAACAACGCTA+AGG + chr3_3:61446536-61446555 Msa0462420:intron 30.0%
!! ATACAGGCTTCATTTTGAAA+AGG + chr3_3:61446919-61446938 Msa0462420:CDS 30.0%
!! GCTTCATTTTGAAAAGGATA+AGG + chr3_3:61446925-61446944 Msa0462420:CDS 30.0%
!! TTTTGAAAAGGATAAGGCTT+TGG + chr3_3:61446931-61446950 Msa0462420:CDS 30.0%
ATTGCAAAGAGAGAAATAGA+TGG + chr3_3:61447153-61447172 Msa0462420:intron 30.0%
!! ACCAAGTTTATTGGTTTGTT+TGG + chr3_3:61447236-61447255 Msa0462420:intron 30.0%
ACCAAACAAACCAATAAACT+TGG - chr3_3:61447240-61447259 None:intergenic 30.0%
ATATACAGAAGATGCCATAA+AGG + chr3_3:61447420-61447439 Msa0462420:CDS 30.0%
ATTTCTCTCCAATAATCATC+CGG - chr3_3:61447592-61447611 None:intergenic 30.0%
AGTTGAAATTTCTTACTCTC+AGG + chr3_3:61447696-61447715 Msa0462420:intron 30.0%
! GAGAGCATGCTTAAATATTA+TGG + chr3_3:61447724-61447743 Msa0462420:CDS 30.0%
CTTAAATATTATGGTGCATC+TGG + chr3_3:61447733-61447752 Msa0462420:CDS 30.0%
CAAAAGAAAGAATTCTGCTT+TGG - chr3_3:61447837-61447856 None:intergenic 30.0%
TGTGCATATCTATCTAGATT+TGG + chr3_3:61447855-61447874 Msa0462420:intron 30.0%
!!! ATCTAGATTTGGTTTTTGAG+TGG + chr3_3:61447866-61447885 Msa0462420:intron 30.0%
! CTGACATGTTATTGTGTTTT+AGG + chr3_3:61447889-61447908 Msa0462420:intron 30.0%
!! GTTTTAGGTGTATAGAAGTT+AGG + chr3_3:61447904-61447923 Msa0462420:intron 30.0%
CAGAATAGTAAAGTTGCTAT+GGG - chr3_3:61448122-61448141 None:intergenic 30.0%
ACAGAATAGTAAAGTTGCTA+TGG - chr3_3:61448123-61448142 None:intergenic 30.0%
ATAGCAACTTTACTATTCTG+TGG + chr3_3:61448122-61448141 Msa0462420:CDS 30.0%
TCCTGAAATGATAGTATGAA+AGG - chr3_3:61448353-61448372 None:intergenic 30.0%
CATACTATCATTTCAGGAAA+CGG + chr3_3:61448355-61448374 Msa0462420:intron 30.0%
GTTAGACATGAGTGAATATA+TGG + chr3_3:61448388-61448407 Msa0462420:CDS 30.0%
! TGGTTTTCTTCTAATAGCTT+CGG - chr3_3:61448486-61448505 None:intergenic 30.0%
TAGAAGAAAACCATTTACTG+TGG + chr3_3:61448493-61448512 Msa0462420:CDS 30.0%
TCAAACAAAACCACAGTAAA+TGG - chr3_3:61448506-61448525 None:intergenic 30.0%
CTTCTTCAATTAATGGAAGA+TGG + chr3_3:61448563-61448582 Msa0462420:CDS 30.0%
ATTAAGATTCACATCAGCAT+CGG - chr3_3:61448613-61448632 None:intergenic 30.0%
! ATCTGAAATGAAGAAACCTA+TGG - chr3_3:61448925-61448944 None:intergenic 30.0%
GACAAACCAACATCATATAA+TGG + chr3_3:61448945-61448964 Msa0462420:CDS 30.0%
AAACTTAATTGCAAACCCAT+TGG + chr3_3:61449518-61449537 Msa0462420:CDS 30.0%
! TGACACTATCTTCATTGATT+TGG + chr3_3:61449575-61449594 Msa0462420:CDS 30.0%
! GATCAAGCTGATTTATAACA+AGG - chr3_3:61449617-61449636 None:intergenic 30.0%
TACAATGGTTCATTACTCAA+GGG - chr3_3:61449668-61449687 None:intergenic 30.0%
! CTGTAAAGTCAAAGATGTTT+TGG + chr3_3:61449725-61449744 Msa0462420:three_prime_UTR 30.0%
CAAACACTAAGCTAACAAAT+AGG - chr3_3:61449753-61449772 None:intergenic 30.0%
TGTTTGATTCTTATGTGATG+AGG + chr3_3:61449767-61449786 Msa0462420:three_prime_UTR 30.0%
AAAAAGGAAGAAAGGAAGGA+AGG - chr3_3:61443057-61443076 None:intergenic 35.0%
GAAGAAAAAGGAAGAAAGGA+AGG - chr3_3:61443061-61443080 None:intergenic 35.0%
GGAAGGAAGAAAGAAGAAAA+AGG - chr3_3:61443073-61443092 None:intergenic 35.0%
TGATGAAGAAGAAACTTGCA+TGG - chr3_3:61443185-61443204 None:intergenic 35.0%
GTGAAGAAGAAGAAGAAGAA+CGG - chr3_3:61443348-61443367 None:intergenic 35.0%
!! TGTTTTTGTTGATGTGAGTG+AGG - chr3_3:61443370-61443389 None:intergenic 35.0%
GAGACAAAACGTTCTCAAAA+CGG + chr3_3:61443561-61443580 Msa0462420:CDS 35.0%
! CAAAACGGTTTTCTTGATTC+TGG + chr3_3:61443576-61443595 Msa0462420:CDS 35.0%
TTGGTTGAATCATTGAGATG+AGG - chr3_3:61443636-61443655 None:intergenic 35.0%
!! ACCAACTACGTTGATGATAA+TGG + chr3_3:61443651-61443670 Msa0462420:CDS 35.0%
TCCATTATCATCAACGTAGT+TGG - chr3_3:61443655-61443674 None:intergenic 35.0%
!! GCTTTGATGAAAGTTGATGA+TGG + chr3_3:61443798-61443817 Msa0462420:CDS 35.0%
! ATAGCCCAACATTTGTTTCT+TGG - chr3_3:61444105-61444124 None:intergenic 35.0%
TCTGACAACCAATTAAATGG+AGG - chr3_3:61444243-61444262 None:intergenic 35.0%
ATATTTGGAAACACAGCCAA+TGG - chr3_3:61444410-61444429 None:intergenic 35.0%
! TGAGATTGGTAATTGGGATT+TGG + chr3_3:61444450-61444469 Msa0462420:intron 35.0%
! CCGTAAGACAAATGGTATTT+TGG - chr3_3:61444601-61444620 None:intergenic 35.0%
! ACCATTTGTCTTACGGTTTT+AGG + chr3_3:61444605-61444624 Msa0462420:intron 35.0%
ACCTAAAACCGTAAGACAAA+TGG - chr3_3:61444609-61444628 None:intergenic 35.0%
!! ATTTTGACCAGAGTATGCAA+GGG - chr3_3:61444660-61444679 None:intergenic 35.0%
ACTCAAAGGACTTATAAACC+AGG - chr3_3:61444742-61444761 None:intergenic 35.0%
! GTTTTGTGGCAATAATGATC+TGG + chr3_3:61444901-61444920 Msa0462420:intron 35.0%
ATGCAAATGATTTCAGACTC+GGG + chr3_3:61445022-61445041 Msa0462420:intron 35.0%
TTCAAGACTACAAAAAGAGC+TGG + chr3_3:61445077-61445096 Msa0462420:CDS 35.0%
! GACTGGCAATTCTTATTTCT+CGG + chr3_3:61445477-61445496 Msa0462420:CDS 35.0%
! ACTGGCAATTCTTATTTCTC+GGG + chr3_3:61445478-61445497 Msa0462420:CDS 35.0%
! AGAAGTTGCTCCTTTTCTAT+TGG + chr3_3:61445502-61445521 Msa0462420:CDS 35.0%
GATAGACACACCAATAGAAA+AGG - chr3_3:61445515-61445534 None:intergenic 35.0%
CATTAATAGTCCTACATCCA+AGG - chr3_3:61445685-61445704 None:intergenic 35.0%
CTTGGATGTAGGACTATTAA+TGG + chr3_3:61445683-61445702 Msa0462420:CDS 35.0%
ATGTAGGACTATTAATGGCT+GGG + chr3_3:61445688-61445707 Msa0462420:CDS 35.0%
!!! AGAGGATTGTTTTAGCTCAT+CGG + chr3_3:61445836-61445855 Msa0462420:intron 35.0%
TTCACACACTTGTTCAATCA+GGG + chr3_3:61445902-61445921 Msa0462420:CDS 35.0%
AACTAGCAGATGAGATTACA+GGG - chr3_3:61446020-61446039 None:intergenic 35.0%
AAACTAGCAGATGAGATTAC+AGG - chr3_3:61446021-61446040 None:intergenic 35.0%
TCAAGTATCACTTGGAACAA+AGG - chr3_3:61446044-61446063 None:intergenic 35.0%
! AGAAGTGTAGTAACTGTAAC+TGG - chr3_3:61446154-61446173 None:intergenic 35.0%
GCATTTAACATCTGGAAAGT+AGG + chr3_3:61446215-61446234 Msa0462420:intron 35.0%
TTAACATCTGGAAAGTAGGA+AGG + chr3_3:61446219-61446238 Msa0462420:intron 35.0%
TGTCTTTATGAAATACTGGG+AGG + chr3_3:61446261-61446280 Msa0462420:intron 35.0%
TAATAGACTCACTGCTTAGA+TGG + chr3_3:61446297-61446316 Msa0462420:intron 35.0%
AGATATGAGTGAGTGTTAAC+TGG + chr3_3:61446323-61446342 Msa0462420:intron 35.0%
TGAGGGCAAATTTGTATGTT+CGG + chr3_3:61446436-61446455 Msa0462420:intron 35.0%
ATGTATAAGGCTGTGAATAC+TGG + chr3_3:61446509-61446528 Msa0462420:intron 35.0%
ATAAAATTCCAACAGCAGAG+AGG - chr3_3:61446594-61446613 None:intergenic 35.0%
! TTGTTTGGAGAGAGTAGTTT+TGG + chr3_3:61446650-61446669 Msa0462420:intron 35.0%
!! GTTTTGGACTTTGAATTCTC+TGG + chr3_3:61446666-61446685 Msa0462420:intron 35.0%
CTACCACTATTGATGAATAC+AGG + chr3_3:61446903-61446922 Msa0462420:CDS 35.0%
AAGCCTGTATTCATCAATAG+TGG - chr3_3:61446909-61446928 None:intergenic 35.0%
ATATAAAGTGCAACCTCACT+CGG - chr3_3:61446989-61447008 None:intergenic 35.0%
TACAAAAGCGACAGTTACAA+AGG - chr3_3:61447047-61447066 None:intergenic 35.0%
! TGAACTGTGTTGTTGTGTAT+AGG + chr3_3:61447336-61447355 Msa0462420:intron 35.0%
CAGCAAGATACATAGTTGAT+AGG + chr3_3:61447458-61447477 Msa0462420:CDS 35.0%
!! ATGAGGTCAATAGCTTTATC+AGG - chr3_3:61447490-61447509 None:intergenic 35.0%
TTTCTCTCCAATAATCATCC+GGG - chr3_3:61447591-61447610 None:intergenic 35.0%
AAGAAGTCTTCTGTTAGATC+TGG + chr3_3:61447995-61448014 Msa0462420:CDS 35.0%
TCTCTTCACAGATCTAGAAA+TGG - chr3_3:61448069-61448088 None:intergenic 35.0%
AACTGAACTAGCAAAGTCTT+TGG + chr3_3:61448163-61448182 Msa0462420:CDS 35.0%
!!! TCACACAAGGTGTGTTTTTT+TGG + chr3_3:61448214-61448233 Msa0462420:intron 35.0%
CATTTCAGAACATCGAAAAG+AGG - chr3_3:61448275-61448294 None:intergenic 35.0%
GCCTTTCATACTATCATTTC+AGG + chr3_3:61448349-61448368 Msa0462420:intron 35.0%
!! CTAATAACTTGCTCACTGAA+TGG - chr3_3:61448418-61448437 None:intergenic 35.0%
CATTCAGTGAGCAAGTTATT+AGG + chr3_3:61448416-61448435 Msa0462420:CDS 35.0%
! GTTATGTTGGTTATGGAGAA+GGG + chr3_3:61448450-61448469 Msa0462420:CDS 35.0%
! TTATGTTGGTTATGGAGAAG+GGG + chr3_3:61448451-61448470 Msa0462420:CDS 35.0%
GCAGCAGCAAATCAAATATT+TGG - chr3_3:61449374-61449393 None:intergenic 35.0%
ACACCTCAAAATCAATTCCT+CGG - chr3_3:61449419-61449438 None:intergenic 35.0%
!! TTCATTGATTTGGATGCCAA+TGG + chr3_3:61449585-61449604 Msa0462420:CDS 35.0%
!! TATAACAAGGGTGTTACCAT+TGG - chr3_3:61449604-61449623 None:intergenic 35.0%
GTACAATGGTTCATTACTCA+AGG - chr3_3:61449669-61449688 None:intergenic 35.0%
GACTTATATATACACCTACC+AGG - chr3_3:61449700-61449719 None:intergenic 35.0%
AGGAAGGAATAGAGTGAGAA+TGG - chr3_3:61443041-61443060 None:intergenic 40.0%
!!! TTTTGAAAGTGTTGAGGGGA+AGG - chr3_3:61443090-61443109 None:intergenic 40.0%
CTTCTTCATCACTTAACCCA+TGG + chr3_3:61443194-61443213 Msa0462420:exon 40.0%
GATGAAAGAAACGAGAGAGA+AGG - chr3_3:61443316-61443335 None:intergenic 40.0%
CTATGAGACCAAGCATGATA+TGG - chr3_3:61443530-61443549 None:intergenic 40.0%
GTACCAAAAGAAAACGGAAC+AGG - chr3_3:61443699-61443718 None:intergenic 40.0%
TATCGAACCTGCAACAACTA+AGG - chr3_3:61444060-61444079 None:intergenic 40.0%
TAGTGACAGAAGCTACACTT+TGG + chr3_3:61444379-61444398 Msa0462420:intron 40.0%
TGATAAGTTTCGGCTGAGAT+TGG + chr3_3:61444436-61444455 Msa0462420:intron 40.0%
! TTTCGGCTGAGATTGGTAAT+TGG + chr3_3:61444443-61444462 Msa0462420:intron 40.0%
! TTCGGCTGAGATTGGTAATT+GGG + chr3_3:61444444-61444463 Msa0462420:intron 40.0%
! TTTTGACCAGAGTATGCAAG+GGG - chr3_3:61444659-61444678 None:intergenic 40.0%
!! GATTTTGACCAGAGTATGCA+AGG - chr3_3:61444661-61444680 None:intergenic 40.0%
!!! ATTTTTTGGGCTACCCGAAA+AGG + chr3_3:61444704-61444723 Msa0462420:intron 40.0%
! ATATCATCGTGGCTTGTGAT+TGG + chr3_3:61444928-61444947 Msa0462420:intron 40.0%
!! TCTATATCACAAAGGCGTTC+TGG + chr3_3:61445150-61445169 Msa0462420:CDS 40.0%
GATGTAGGACTATTAATGGC+TGG + chr3_3:61445687-61445706 Msa0462420:CDS 40.0%
TGTAGGACTATTAATGGCTG+GGG + chr3_3:61445689-61445708 Msa0462420:CDS 40.0%
AAAGAATGACATCACCTGCA+AGG - chr3_3:61445870-61445889 None:intergenic 40.0%
GTTCACACACTTGTTCAATC+AGG + chr3_3:61445901-61445920 Msa0462420:CDS 40.0%
TGCTTAAACCTTCACTTGGA+AGG + chr3_3:61445971-61445990 Msa0462420:CDS 40.0%
GCTTAAACCTTCACTTGGAA+GGG + chr3_3:61445972-61445991 Msa0462420:CDS 40.0%
CTTAAACCTTCACTTGGAAG+GGG + chr3_3:61445973-61445992 Msa0462420:CDS 40.0%
!!! CATGTAACCTTTTGGTTCCA+TGG - chr3_3:61446372-61446391 None:intergenic 40.0%
TGCAATCTGTTGCTGAAATG+AGG + chr3_3:61446418-61446437 Msa0462420:intron 40.0%
GCAATCTGTTGCTGAAATGA+GGG + chr3_3:61446419-61446438 Msa0462420:intron 40.0%
!! ATTGGGAGGGATTTGTTGTT+TGG + chr3_3:61446635-61446654 Msa0462420:intron 40.0%
! AAAAGGATAAGGCTTTGGCA+CGG + chr3_3:61446936-61446955 Msa0462420:CDS 40.0%
GACAGTTACAAAGGAGAAGA+GGG - chr3_3:61447038-61447057 None:intergenic 40.0%
CCTTATAGCGACAGCTAAAA+CGG + chr3_3:61447272-61447291 Msa0462420:intron 40.0%
CTTCTGTATATCTGCACTTG+TGG - chr3_3:61447411-61447430 None:intergenic 40.0%
CAAATGAACTGCAGCCTTTA+TGG - chr3_3:61447437-61447456 None:intergenic 40.0%
ATTGACCTCATTGATGAAGC+AGG + chr3_3:61447499-61447518 Msa0462420:CDS 40.0%
TACTTCCTGCTTCATCAATG+AGG - chr3_3:61447507-61447526 None:intergenic 40.0%
! TTGCATACTCTCTAAAAGCC+CGG + chr3_3:61447570-61447589 Msa0462420:CDS 40.0%
CTAAAAGCCCGGATGATTAT+TGG + chr3_3:61447581-61447600 Msa0462420:CDS 40.0%
TGTTCAGTCCACGCTTAAAA+TGG + chr3_3:61447618-61447637 Msa0462420:CDS 40.0%
GTCCACGCTTAAAATGGTAA+TGG + chr3_3:61447624-61447643 Msa0462420:intron 40.0%
! TGCCATTACCATTTTAAGCG+TGG - chr3_3:61447629-61447648 None:intergenic 40.0%
!! CGCTTAAAATGGTAATGGCA+TGG + chr3_3:61447629-61447648 Msa0462420:intron 40.0%
AATTTCTTACTCTCAGGTGC+AGG + chr3_3:61447702-61447721 Msa0462420:intron 40.0%
TGAGTCAAGTATGAGTTCAC+TGG - chr3_3:61447770-61447789 None:intergenic 40.0%
GCAACTGTTGCTATATGATC+AGG - chr3_3:61447930-61447949 None:intergenic 40.0%
AAACTAAGGGAACGTGTGAT+TGG + chr3_3:61448023-61448042 Msa0462420:CDS 40.0%
TAAAGTTGCTATGGGTCTAC+CGG - chr3_3:61448114-61448133 None:intergenic 40.0%
!! TCTTTGGCTGCATGCTATTT+TGG + chr3_3:61448179-61448198 Msa0462420:CDS 40.0%
GATCGGTAAGTATTCACACA+AGG + chr3_3:61448201-61448220 Msa0462420:intron 40.0%
TCTGTACATGTCACATCGAT+TGG + chr3_3:61448307-61448326 Msa0462420:intron 40.0%
TTCAGGAAACGGACATGATA+AGG + chr3_3:61448366-61448385 Msa0462420:intron 40.0%
TCCATAACCAACATAACCTG+GGG - chr3_3:61448447-61448466 None:intergenic 40.0%
CTCCATAACCAACATAACCT+GGG - chr3_3:61448448-61448467 None:intergenic 40.0%
TCTCCATAACCAACATAACC+TGG - chr3_3:61448449-61448468 None:intergenic 40.0%
! GGTTATGTTGGTTATGGAGA+AGG + chr3_3:61448449-61448468 Msa0462420:CDS 40.0%
! TATGTTGGTTATGGAGAAGG+GGG + chr3_3:61448452-61448471 Msa0462420:CDS 40.0%
AATGGAAGATGGCCATCTTA+CGG + chr3_3:61448574-61448593 Msa0462420:CDS 40.0%
AAACCTGAGAATCCGTAAGA+TGG - chr3_3:61448589-61448608 None:intergenic 40.0%
TACTTGCATAGAAGCCGTAA+AGG - chr3_3:61448695-61448714 None:intergenic 40.0%
! GTGGTGATGACTTCAAATGT+GGG + chr3_3:61448867-61448886 Msa0462420:CDS 40.0%
! TGGTGATGACTTCAAATGTG+GGG + chr3_3:61448868-61448887 Msa0462420:CDS 40.0%
CGATGGTAATTGAAGAACTG+AGG + chr3_3:61448976-61448995 Msa0462420:CDS 40.0%
GCCTCCAAAGTGAATATCAT+CGG - chr3_3:61449118-61449137 None:intergenic 40.0%
ACCTCAAAATCAATTCCTCG+GGG - chr3_3:61449417-61449436 None:intergenic 40.0%
CACCTCAAAATCAATTCCTC+GGG - chr3_3:61449418-61449437 None:intergenic 40.0%
! ATTGCTTGCTGAAAAGTGCA+AGG + chr3_3:61449548-61449567 Msa0462420:CDS 40.0%
AATGGCATACACGTCACTGA+AGG - chr3_3:61443023-61443042 None:intergenic 45.0%
AAGTGAGAGTTGGGAACCAT+GGG - chr3_3:61443213-61443232 None:intergenic 45.0%
GAAAGAAACGAGAGAGAAGG+TGG - chr3_3:61443313-61443332 None:intergenic 45.0%
GCATGATATGGTGTGCGTAA+AGG - chr3_3:61443518-61443537 None:intergenic 45.0%
TACGCACACCATATCATGCT+TGG + chr3_3:61443519-61443538 Msa0462420:CDS 45.0%
! CGACCTGTTCCGTTTTCTTT+TGG + chr3_3:61443693-61443712 Msa0462420:CDS 45.0%
TTAGCATCACGTGTCAACAC+CGG + chr3_3:61444017-61444036 Msa0462420:intron 45.0%
TATCGGTCCTTAGTTGTTGC+AGG + chr3_3:61444050-61444069 Msa0462420:intron 45.0%
CACTGCAGCCTCCATTTAAT+TGG + chr3_3:61444232-61444251 Msa0462420:intron 45.0%
CGATCAAAGTGAAACCAACG+CGG - chr3_3:61444357-61444376 None:intergenic 45.0%
! ACAGAAGCTACACTTTGGAG+AGG + chr3_3:61444384-61444403 Msa0462420:intron 45.0%
GGTAATTGGGATTTGGACTC+TGG + chr3_3:61444457-61444476 Msa0462420:intron 45.0%
TTTGACCAGAGTATGCAAGG+GGG - chr3_3:61444658-61444677 None:intergenic 45.0%
! GATATGACAGCAGCCTTTTC+GGG - chr3_3:61444720-61444739 None:intergenic 45.0%
! GGATATGACAGCAGCCTTTT+CGG - chr3_3:61444721-61444740 None:intergenic 45.0%
AAAAGGCTGCTGTCATATCC+TGG + chr3_3:61444721-61444740 Msa0462420:intron 45.0%
! GATCTGGAGCTATATCATCG+TGG + chr3_3:61444917-61444936 Msa0462420:intron 45.0%
CAAAAAGAGCTGGCTAGAGA+TGG + chr3_3:61445087-61445106 Msa0462420:CDS 45.0%
AGCCAGGTTATGTGTCCAAT+GGG + chr3_3:61445115-61445134 Msa0462420:CDS 45.0%
!! AGATTTGTTGTGTCCCCCAT+TGG - chr3_3:61445133-61445152 None:intergenic 45.0%
GGATCTGCCGCTAAAACAAA+AGG + chr3_3:61445177-61445196 Msa0462420:CDS 45.0%
TGCTCTATCACAATTCTGCG+TGG + chr3_3:61445301-61445320 Msa0462420:CDS 45.0%
GGGCTGATTGATCCAGTTAT+TGG + chr3_3:61445347-61445366 Msa0462420:CDS 45.0%
TCAACTTCTCGGCCAATAAC+TGG - chr3_3:61445362-61445381 None:intergenic 45.0%
TGGGAAAACAGCTATTGCAG+AGG + chr3_3:61445454-61445473 Msa0462420:CDS 45.0%
GGGAAAACAGCTATTGCAGA+GGG + chr3_3:61445455-61445474 Msa0462420:CDS 45.0%
AGGCACGTGCAATTACAGAA+GGG - chr3_3:61445580-61445599 None:intergenic 45.0%
AAGGCACGTGCAATTACAGA+AGG - chr3_3:61445581-61445600 None:intergenic 45.0%
GACAAAACGTGTCATGTCCT+TGG + chr3_3:61445665-61445684 Msa0462420:intron 45.0%
AAAAGAGAGAGGAGAGCTAG+AGG + chr3_3:61445713-61445732 Msa0462420:CDS 45.0%
CTTGTTCAATCAGGGACAAC+CGG + chr3_3:61445910-61445929 Msa0462420:CDS 45.0%
TTGTTCAATCAGGGACAACC+GGG + chr3_3:61445911-61445930 Msa0462420:CDS 45.0%
TCTTGCATATCTCCACTCCA+TGG + chr3_3:61446352-61446371 Msa0462420:intron 45.0%
!!! AACCTTTTGGTTCCATGGAG+TGG - chr3_3:61446367-61446386 None:intergenic 45.0%
TGTTAATGCCTCTCTGCTGT+TGG + chr3_3:61446583-61446602 Msa0462420:intron 45.0%
GATGCAATACACTGCACAGA+CGG - chr3_3:61446884-61446903 None:intergenic 45.0%
CGACAGTTACAAAGGAGAAG+AGG - chr3_3:61447039-61447058 None:intergenic 45.0%
!!! CCGTTTTAGCTGTCGCTATA+AGG - chr3_3:61447275-61447294 None:intergenic 45.0%
GACAGCTAAAACGGAACGAA+GGG + chr3_3:61447281-61447300 Msa0462420:intron 45.0%
GCAGCTCATGCAAAGAACAT+CGG - chr3_3:61447666-61447685 None:intergenic 45.0%
TTATGGTGCATCTGGCATTG+AGG + chr3_3:61447741-61447760 Msa0462420:CDS 45.0%
AACTGGAATTCCTGACCAGA+GGG - chr3_3:61447955-61447974 None:intergenic 45.0%
TCTGTGAAGAGATCTCGAGT+CGG + chr3_3:61448077-61448096 Msa0462420:CDS 45.0%
AAAGTTGCTATGGGTCTACC+GGG - chr3_3:61448113-61448132 None:intergenic 45.0%
TTACTATTCTGTGGCCCAAC+TGG + chr3_3:61448131-61448150 Msa0462420:CDS 45.0%
!!! GGCTGCATGCTATTTTGGAT+CGG + chr3_3:61448184-61448203 Msa0462420:CDS 45.0%
AAGTTATTAGGATCTCCCCC+AGG + chr3_3:61448428-61448447 Msa0462420:CDS 45.0%
CCATAACCAACATAACCTGG+GGG - chr3_3:61448446-61448465 None:intergenic 45.0%
! GGTGGTGATGACTTCAAATG+TGG + chr3_3:61448866-61448885 Msa0462420:CDS 45.0%
TCTATCCTGTTGAGCAGTTC+TGG - chr3_3:61449014-61449033 None:intergenic 45.0%
GCTCAACAGGATAGATGAAG+TGG + chr3_3:61449019-61449038 Msa0462420:CDS 45.0%
CAACAGGATAGATGAAGTGG+TGG + chr3_3:61449022-61449041 Msa0462420:CDS 45.0%
! ACGAACCTGTGGCTTTTCAA+GGG - chr3_3:61449057-61449076 None:intergenic 45.0%
! AACGAACCTGTGGCTTTTCA+AGG - chr3_3:61449058-61449077 None:intergenic 45.0%
ACCAAAACTCAACGAACCTG+TGG - chr3_3:61449068-61449087 None:intergenic 45.0%
CTCGCCGATGATATTCACTT+TGG + chr3_3:61449111-61449130 Msa0462420:intron 45.0%
GCCGATGATATTCACTTTGG+AGG + chr3_3:61449114-61449133 Msa0462420:intron 45.0%
AAAATCAATTCCTCGGGGCA+TGG - chr3_3:61449412-61449431 None:intergenic 45.0%
! TGAGGTGTCTGAATCAGTCA+AGG + chr3_3:61449431-61449450 Msa0462420:CDS 45.0%
AGTCAAGGACCTTGTCTGTA+AGG + chr3_3:61449446-61449465 Msa0462420:CDS 45.0%
AAGGACCTTGTCTGTAAGGA+AGG + chr3_3:61449450-61449469 Msa0462420:CDS 45.0%
CATAGCCTTCCTTACAGACA+AGG - chr3_3:61449458-61449477 None:intergenic 45.0%
GAAGGCTATGACCCAACATA+TGG + chr3_3:61449468-61449487 Msa0462420:CDS 45.0%
GAGGTCTAGCACCATATGTT+GGG - chr3_3:61449482-61449501 None:intergenic 45.0%
AGAGGTCTAGCACCATATGT+TGG - chr3_3:61449483-61449502 None:intergenic 45.0%
TTTACAATGGCTCTCCTGAG+AGG - chr3_3:61449501-61449520 None:intergenic 45.0%
CAAGCAATGCTTCAGCCAAT+GGG - chr3_3:61449536-61449555 None:intergenic 45.0%
! CTTGCTGAAAAGTGCAAGGA+AGG + chr3_3:61449552-61449571 Msa0462420:CDS 45.0%
! TACTCAAGGGTGACTTGTGT+CGG - chr3_3:61449655-61449674 None:intergenic 45.0%
ACCATTGTACAGAAGTAGCC+TGG + chr3_3:61449679-61449698 Msa0462420:three_prime_UTR 45.0%
ACCAGGCTACTTCTGTACAA+TGG - chr3_3:61449683-61449702 None:intergenic 45.0%
TTGTACAGAAGTAGCCTGGT+AGG + chr3_3:61449683-61449702 Msa0462420:three_prime_UTR 45.0%
!! TTTAAGAAAATTAATTTATT+TGG + chr3_3:61444125-61444144 Msa0462420:intron 5.0%
!!! ATTTTTTTTGTAATTTTAAT+TGG + chr3_3:61446617-61446636 Msa0462420:intron 5.0%
!!! TTTTTTTTGTAATTTTAATT+GGG + chr3_3:61446618-61446637 Msa0462420:intron 5.0%
!! AATAAAAAAATAAAAATAAG+CGG + chr3_3:61449250-61449269 Msa0462420:intron 5.0%
GAAGTGAGAGTTGGGAACCA+TGG - chr3_3:61443214-61443233 None:intergenic 50.0%
AGCGGTTGGAAGTGAGAGTT+GGG - chr3_3:61443222-61443241 None:intergenic 50.0%
AAGCGGTTGGAAGTGAGAGT+TGG - chr3_3:61443223-61443242 None:intergenic 50.0%
GAGAGAAGGTGGTGAGTATG+CGG - chr3_3:61443302-61443321 None:intergenic 50.0%
AGTTACGGTGAACGTGAACG+TGG - chr3_3:61443412-61443431 None:intergenic 50.0%
ACACCGGTCACGTGAAGTAT+CGG + chr3_3:61444033-61444052 Msa0462420:intron 50.0%
AGGTGTGTTTGTTTCCGCGT+TGG + chr3_3:61444340-61444359 Msa0462420:intron 50.0%
! CTACACTTTGGAGAGGCCAT+TGG + chr3_3:61444391-61444410 Msa0462420:intron 50.0%
GAGCCAGGTTATGTGTCCAA+TGG + chr3_3:61445114-61445133 Msa0462420:CDS 50.0%
GCCAGGTTATGTGTCCAATG+GGG + chr3_3:61445116-61445135 Msa0462420:CDS 50.0%
CCAGGTTATGTGTCCAATGG+GGG + chr3_3:61445117-61445136 Msa0462420:CDS 50.0%
AATCAGCCCAACACTTGCAC+GGG - chr3_3:61445336-61445355 None:intergenic 50.0%
CAATCAGCCCAACACTTGCA+CGG - chr3_3:61445337-61445356 None:intergenic 50.0%
CCAGCTTCACCCAGAAGAAT+TGG - chr3_3:61445431-61445450 None:intergenic 50.0%
CCAATTCTTCTGGGTGAAGC+TGG + chr3_3:61445428-61445447 Msa0462420:CDS 50.0%
TTCTGGGTGAAGCTGGAGTT+GGG + chr3_3:61445435-61445454 Msa0462420:CDS 50.0%
AACAGCTATTGCAGAGGGAC+TGG + chr3_3:61445460-61445479 Msa0462420:CDS 50.0%
CGTGTCATGTCCTTGGATGT+AGG + chr3_3:61445672-61445691 Msa0462420:CDS 50.0%
TATGTGTGGCACACGACAAG+AGG + chr3_3:61445818-61445837 Msa0462420:intron 50.0%
!! CATCGGTTTACACTCCTTGC+AGG + chr3_3:61445853-61445872 Msa0462420:intron 50.0%
ACAACCGGGAGGGGAAATAA+GGG + chr3_3:61445925-61445944 Msa0462420:CDS 50.0%
! AGAACCCTTATTTCCCCTCC+CGG - chr3_3:61445932-61445951 None:intergenic 50.0%
AACTGACCCCTTCCAAGTGA+AGG - chr3_3:61445982-61446001 None:intergenic 50.0%
ACTTGGAAGGGGTCAGTTTC+AGG + chr3_3:61445984-61446003 Msa0462420:CDS 50.0%
! AGGGGTCAGTTTCAGGTGAT+TGG + chr3_3:61445991-61446010 Msa0462420:intron 50.0%
CTCCACTCCATGGAACCAAA+AGG + chr3_3:61446362-61446381 Msa0462420:intron 50.0%
AAGGAGAAGAGGGAGTCACT+TGG - chr3_3:61447028-61447047 None:intergenic 50.0%
CGACAGCTAAAACGGAACGA+AGG + chr3_3:61447280-61447299 Msa0462420:intron 50.0%
TAGCAACAGTTGCTTCCCTC+TGG + chr3_3:61447937-61447956 Msa0462420:CDS 50.0%
GAACTGGAATTCCTGACCAG+AGG - chr3_3:61447956-61447975 None:intergenic 50.0%
GGAACGTGTGATTGGACAAG+AGG + chr3_3:61448031-61448050 Msa0462420:CDS 50.0%
ACGTGTGATTGGACAAGAGG+AGG + chr3_3:61448034-61448053 Msa0462420:CDS 50.0%
! CAGTTTTCCCAACGCCAGTT+GGG - chr3_3:61448148-61448167 None:intergenic 50.0%
! TCAGTTTTCCCAACGCCAGT+TGG - chr3_3:61448149-61448168 None:intergenic 50.0%
! CCCCCAGGTTATGTTGGTTA+TGG + chr3_3:61448443-61448462 Msa0462420:CDS 50.0%
TGGCCATCTTACGGATTCTC+AGG + chr3_3:61448583-61448602 Msa0462420:CDS 50.0%
! GGGTCTAGTGCCATTGCTAA+GGG + chr3_3:61448888-61448907 Msa0462420:CDS 50.0%
! GTTGTGTCGACCCTTAGCAA+TGG - chr3_3:61448901-61448920 None:intergenic 50.0%
AAGGGTCGACACAACTCCAT+AGG + chr3_3:61448906-61448925 Msa0462420:CDS 50.0%
TTCGTCCAGAACTGCTCAAC+AGG + chr3_3:61449006-61449025 Msa0462420:CDS 50.0%
TCATCCCCTTGAAAAGCCAC+AGG + chr3_3:61449049-61449068 Msa0462420:CDS 50.0%
!! CGAACCTGTGGCTTTTCAAG+GGG - chr3_3:61449056-61449075 None:intergenic 50.0%
! GCCACAGGTTCGTTGAGTTT+TGG + chr3_3:61449064-61449083 Msa0462420:intron 50.0%
TGCTGCTGCAAGACGTGAAA+AGG + chr3_3:61449385-61449404 Msa0462420:CDS 50.0%
!! GCCCCGAGGAATTGATTTTG+AGG + chr3_3:61449413-61449432 Msa0462420:CDS 50.0%
! CATATGGTGCTAGACCTCTC+AGG + chr3_3:61449484-61449503 Msa0462420:CDS 50.0%
GCAAGCAATGCTTCAGCCAA+TGG - chr3_3:61449537-61449556 None:intergenic 50.0%
AGGGTTCCGGTGAGTGAATG+CGG - chr3_3:61443249-61443268 None:intergenic 55.0%
AGAAGGTGGTGAGTATGCGG+TGG - chr3_3:61443299-61443318 None:intergenic 55.0%
CGTGATGCTAACGCGCCATT+TGG - chr3_3:61444008-61444027 None:intergenic 55.0%
GGACCGATACTTCACGTGAC+CGG - chr3_3:61444039-61444058 None:intergenic 55.0%
GAACTCCCCCTTGCATACTC+TGG + chr3_3:61444650-61444669 Msa0462420:intron 55.0%
CGGGTCAAACCCAGATCAGT+TGG + chr3_3:61445041-61445060 Msa0462420:CDS 55.0%
CCACAGCTGCCAACTGATCT+GGG - chr3_3:61445053-61445072 None:intergenic 55.0%
GCTAGAGATGGTAGAGAGCC+AGG + chr3_3:61445099-61445118 Msa0462420:CDS 55.0%
CCCCCATTGGACACATAACC+TGG - chr3_3:61445120-61445139 None:intergenic 55.0%
!! TCACAAAGGCGTTCTGGTGC+AGG + chr3_3:61445156-61445175 Msa0462420:CDS 55.0%
TCACTGCCCGTGCAAGTGTT+GGG + chr3_3:61445327-61445346 Msa0462420:CDS 55.0%
CTTCTGGGTGAAGCTGGAGT+TGG + chr3_3:61445434-61445453 Msa0462420:CDS 55.0%
ATGGCTGGGGCAAAAGAGAG+AGG + chr3_3:61445702-61445721 Msa0462420:CDS 55.0%
TTCAATCAGGGACAACCGGG+AGG + chr3_3:61445914-61445933 Msa0462420:CDS 55.0%
TCAATCAGGGACAACCGGGA+GGG + chr3_3:61445915-61445934 Msa0462420:CDS 55.0%
GACAACCGGGAGGGGAAATA+AGG + chr3_3:61445924-61445943 Msa0462420:CDS 55.0%
GGGAGGGGAAATAAGGGTTC+TGG + chr3_3:61445931-61445950 Msa0462420:CDS 55.0%
! AGGATAAGGCTTTGGCACGG+CGG + chr3_3:61446939-61446958 Msa0462420:CDS 55.0%
CACGGCGGTTTCAACCTGTT+TGG + chr3_3:61446954-61446973 Msa0462420:CDS 55.0%
ACAGTTGCTTCCCTCTGGTC+AGG + chr3_3:61447942-61447961 Msa0462420:CDS 55.0%
TCAGCAGTGAGCTGCTGAAC+TGG - chr3_3:61447972-61447991 None:intergenic 55.0%
AGAGATCTCGAGTCGGCCTT+CGG + chr3_3:61448084-61448103 Msa0462420:CDS 55.0%
GGATCTCCCCCAGGTTATGT+TGG + chr3_3:61448437-61448456 Msa0462420:CDS 55.0%
! GGGGTCTAGTGCCATTGCTA+AGG + chr3_3:61448887-61448906 Msa0462420:CDS 55.0%
GTGAGTGAATGCGGCGGAAG+CGG - chr3_3:61443240-61443259 None:intergenic 60.0%
CTTCCGCCGCATTCACTCAC+CGG + chr3_3:61443240-61443259 Msa0462420:CDS 60.0%
GTTCCGGTGAGTGAATGCGG+CGG - chr3_3:61443246-61443265 None:intergenic 60.0%
!! GTGGTTGCGGTGGTGGAAGA+GGG - chr3_3:61443268-61443287 None:intergenic 60.0%
! TGAGTATGCGGTGGCGGTTG+TGG - chr3_3:61443290-61443309 None:intergenic 60.0%
AGGTGGTGAGTATGCGGTGG+CGG - chr3_3:61443296-61443315 None:intergenic 60.0%
CCCAGATCAGTTGGCAGCTG+TGG + chr3_3:61445050-61445069 Msa0462420:CDS 60.0%
GCCACAGCTGCCAACTGATC+TGG - chr3_3:61445054-61445073 None:intergenic 60.0%
CTCACTGCCCGTGCAAGTGT+TGG + chr3_3:61445326-61445345 Msa0462420:CDS 60.0%
CAATCAGGGACAACCGGGAG+GGG + chr3_3:61445916-61445935 Msa0462420:CDS 60.0%
GAGATCTCGAGTCGGCCTTC+GGG + chr3_3:61448085-61448104 Msa0462420:CDS 60.0%
TTCTGTGGCCCAACTGGCGT+TGG + chr3_3:61448137-61448156 Msa0462420:CDS 60.0%
TCTGTGGCCCAACTGGCGTT+GGG + chr3_3:61448138-61448157 Msa0462420:CDS 60.0%
GTGAAAAGGACCATGCCCCG+AGG + chr3_3:61449399-61449418 Msa0462420:CDS 60.0%
GTGAATGCGGCGGAAGCGGT+TGG - chr3_3:61443236-61443255 None:intergenic 65.0%
!! GCGGTGGTGGAAGAGGGTTC+CGG - chr3_3:61443262-61443281 None:intergenic 65.0%
!! GGTGGTTGCGGTGGTGGAAG+AGG - chr3_3:61443269-61443288 None:intergenic 65.0%
GGTTGTGGTGGTTGCGGTGG+TGG - chr3_3:61443275-61443294 None:intergenic 65.0%
! GGTGGCGGTTGTGGTGGTTG+CGG - chr3_3:61443281-61443300 None:intergenic 65.0%
! GTATGCGGTGGCGGTTGTGG+TGG - chr3_3:61443287-61443306 None:intergenic 65.0%
TGGGTCTACCGGGATCCCGA+AGG - chr3_3:61448103-61448122 None:intergenic 65.0%
GGCGGTTGTGGTGGTTGCGG+TGG - chr3_3:61443278-61443297 None:intergenic 70.0%
CGAGTCGGCCTTCGGGATCC+CGG + chr3_3:61448092-61448111 Msa0462420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61442985 61449886 61442985 ID=Msa0462420;Name=Msa0462420
chr3_3 mRNA 61442985 61449886 61442985 ID=Msa0462420-mRNA-1;Parent=Msa0462420;Name=Msa0462420-mRNA-1;_AED=0.14;_eAED=0.14;_QI=228|1|1|1|0.83|0.69|13|192|939
chr3_3 exon 61442985 61443844 61442985 ID=Msa0462420-mRNA-1:exon:12937;Parent=Msa0462420-mRNA-1
chr3_3 exon 61445038 61445198 61445038 ID=Msa0462420-mRNA-1:exon:12938;Parent=Msa0462420-mRNA-1
chr3_3 exon 61445291 61445523 61445291 ID=Msa0462420-mRNA-1:exon:12939;Parent=Msa0462420-mRNA-1
chr3_3 exon 61445666 61445774 61445666 ID=Msa0462420-mRNA-1:exon:12940;Parent=Msa0462420-mRNA-1
chr3_3 exon 61445875 61446005 61445875 ID=Msa0462420-mRNA-1:exon:12941;Parent=Msa0462420-mRNA-1
chr3_3 exon 61446893 61446994 61446893 ID=Msa0462420-mRNA-1:exon:12942;Parent=Msa0462420-mRNA-1
chr3_3 exon 61447358 61447639 61447358 ID=Msa0462420-mRNA-1:exon:12943;Parent=Msa0462420-mRNA-1
chr3_3 exon 61447718 61447818 61447718 ID=Msa0462420-mRNA-1:exon:12944;Parent=Msa0462420-mRNA-1
chr3_3 exon 61447911 61448205 61447911 ID=Msa0462420-mRNA-1:exon:12945;Parent=Msa0462420-mRNA-1
chr3_3 exon 61448371 61448604 61448371 ID=Msa0462420-mRNA-1:exon:12946;Parent=Msa0462420-mRNA-1
chr3_3 exon 61448837 61449070 61448837 ID=Msa0462420-mRNA-1:exon:12947;Parent=Msa0462420-mRNA-1
chr3_3 exon 61449366 61449832 61449366 ID=Msa0462420-mRNA-1:exon:12948;Parent=Msa0462420-mRNA-1
chr3_3 exon 61449856 61449886 61449856 ID=Msa0462420-mRNA-1:exon:12949;Parent=Msa0462420-mRNA-1
chr3_3 five_prime_UTR 61442985 61443212 61442985 ID=Msa0462420-mRNA-1:five_prime_utr;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61443213 61443844 61443213 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61445038 61445198 61445038 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61445291 61445523 61445291 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61445666 61445774 61445666 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61445875 61446005 61445875 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61446893 61446994 61446893 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61447358 61447639 61447358 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61447718 61447818 61447718 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61447911 61448205 61447911 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61448371 61448604 61448371 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61448837 61449070 61448837 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 CDS 61449366 61449671 61449366 ID=Msa0462420-mRNA-1:cds;Parent=Msa0462420-mRNA-1
chr3_3 three_prime_UTR 61449672 61449832 61449672 ID=Msa0462420-mRNA-1:three_prime_utr;Parent=Msa0462420-mRNA-1
chr3_3 three_prime_UTR 61449856 61449886 61449856 ID=Msa0462420-mRNA-1:three_prime_utr;Parent=Msa0462420-mRNA-1
Gene Sequence

>Msa0462420

ATGGTTCCCAACTCTCACTTCCAACCGCTTCCGCCGCATTCACTCACCGGAACCCTCTTCCACCACCGCAACCACCACAACCGCCACCGCATACTCACCACCTTCTCTCTCGTTTCTTTCATCTCAAAGAAACCGTTCTTCTTCTTCTTCTTCACCTCACTCACATCAACAAAAACAAAAAGAATAAGAAGAACGTCCACGTTCACGTTCACCGTAACTTCAATATTCGAACGATTCACAGAAAGATCAATAAAATCAATAGTCTACGCCGAAAAAGAAGCAAAATTCTTCAAGAGCGATTTCCTTTACGCACACCATATCATGCTTGGTCTCATAGCTGAAGCTGAAGAGACAAAACGTTCTCAAAACGGTTTTCTTGATTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACCAACTACGTTGATGATAATGGAGTGTATGTGTATGAAGATCGACCTGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTCTGAACCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATGAAAGTTGATGATGGAAGTTCTGCTAGAATTCTTTATAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGTGGCATATTCAAGACTACAAAAAGAGCTGGCTAGAGATGGTAGAGAGCCAGGTTATGTGTCCAATGGGGGACACAACAAATCTATATCACAAAGGCGTTCTGGTGCAGGATCTGCCGCTAAAACAAAAGATAAAAAGAGTGCTCTATCACAATTCTGCGTGGATCTCACTGCCCGTGCAAGTGTTGGGCTGATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCAAAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGCAGAGGGACTGGCAATTCTTATTTCTCGGGCAGAAGTTGCTCCTTTTCTATTGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACCGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCTTCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGTGTACGTGAGAAATATGAAGCACACCACAAGTGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGATTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTGCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAGTGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTGTATAGAAGTTAGGCCTGATCATATAGCAACAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGATCTGGATAATAAACTAAGGGAACGTGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGATCTGTGAAGAGATCTCGAGTCGGCCTTCGGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGCGTTGGGAAAACTGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGAAACGGACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACGGATTCTCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAACTCCATAGGTTTCTTCATTTCAGATGACAAACCAACATCATATAATGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGTTGCTCCAAATATTTGATTTGCTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAGAGCCATTGTAAACTTAATTGCAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTATCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACAGTCAACTTATCCGACACAAGTCACCCTTGA
Protein sequence

>Msa0462420

MVPNSHFQPLPPHSLTGTLFHHRNHHNRHRILTTFSLVSFISKKPFFFFFFTSLTSTKTKRIRRTSTFTFTVTSIFERFTERSIKSIVYAEKEAKFFKSDFLYAHHIMLGLIAEAEETKRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYEDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALMKVDDGSSARILYRLGSNPDQLAAVAYSRLQKELARDGREPGYVSNGGHNKSISQRRSGAGSAAKTKDKKSALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGVREKYEAHHKCRYTEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTSELILDSYLTSAAFDNECIEVRPDHIATVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLRDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETDMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHNSIGFFISDDKPTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRRAIVNLIANPLAEALLAEKCKEGDTIFIDLDANGNTLVINQLDQTVNLSDTSHP*