AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462470 MtrunA17_Chr3g0131351 95.497 955 22 4 1 939 9 958 0.0 1862
Msa0462470 MtrunA17_Chr3g0131711 47.241 870 411 15 72 934 79 907 0.0 754
Msa0462470 MtrunA17_Chr3g0134631 45.405 914 449 15 30 934 40 912 0.0 743
Msa0462470 MtrunA17_Chr8g0385811 45.534 918 438 17 34 934 39 911 0.0 742
Msa0462470 MtrunA17_Chr7g0218421 38.307 945 458 18 64 938 62 951 0.0 608
Msa0462470 MtrunA17_Chr6g0454071 37.695 963 480 18 36 929 33 944 0.0 602
Msa0462470 MtrunA17_Chr3g0137071 43.497 715 328 11 275 925 247 949 0.0 574
Msa0462470 MtrunA17_Chr4g0061371 43.593 718 323 13 277 931 162 860 0.0 563
Msa0462470 MtrunA17_Chr7g0225161 42.120 736 340 15 263 932 145 860 2.96e-173 527
Msa0462470 MtrunA17_Chr3g0102771 48.094 341 166 5 597 935 454 785 1.03e-103 342
Msa0462470 MtrunA17_Chr3g0102771 32.653 490 280 7 84 550 1 463 2.04e-67 242
Msa0462470 MtrunA17_Chr3g0135231 34.101 651 342 21 2 632 3 586 3.44e-85 287
Msa0462470 MtrunA17_Chr3g0135231 52.688 93 34 1 761 853 568 650 7.88e-20 95.1
Msa0462470 MtrunA17_Chr2g0329561 39.566 369 204 4 565 932 106 456 2.52e-80 269
Msa0462470 MtrunA17_Chr2g0277781 42.712 295 152 4 605 897 2 281 8.68e-73 242
Msa0462470 MtrunA17_Chr1g0188061 46.429 140 64 2 682 821 221 349 6.21e-29 119
Msa0462470 MtrunA17_Chr7g0260931 52.809 89 42 0 597 685 6 94 1.87e-24 98.6
Msa0462470 MtrunA17_Chr2g0277771 36.184 152 81 3 782 932 1 137 3.28e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462470 AT5G51070.1 63.425 905 314 10 51 946 46 942 0.0 1140
Msa0462470 AT5G50920.1 46.469 878 391 14 79 934 89 909 0.0 751
Msa0462470 AT3G48870.2 46.458 861 409 14 83 934 82 899 0.0 737
Msa0462470 AT3G48870.1 46.458 861 409 14 83 934 113 930 0.0 736
Msa0462470 AT3G48870.4 46.458 861 409 14 83 934 113 930 0.0 736
Msa0462470 AT3G48870.3 46.458 861 409 14 83 934 113 930 0.0 736
Msa0462470 AT5G15450.1 38.942 945 443 19 58 923 42 931 0.0 610
Msa0462470 AT2G25140.1 36.821 975 481 20 39 937 39 954 0.0 584
Msa0462470 AT1G74310.1 42.958 710 326 13 277 926 162 852 0.0 555
Msa0462470 AT1G74310.2 43.368 671 301 13 277 887 162 813 1.15e-173 526
Msa0462470 AT4G14670.1 40.711 506 228 9 278 722 128 622 6.64e-107 345
Msa0462470 AT3G45450.1 30.061 326 179 10 174 471 5 309 1.12e-31 127

Find 234 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGAACTGCAGCCTTTA+TGG 0.098364 3_3:-61511594 None:intergenic
TCTTTGGCTGCATGCTATTT+TGG 0.134909 3_3:+61512339 Msa0462470:CDS
TAACATTCTTCTTCAATTAA+TGG 0.179501 3_3:+61512716 Msa0462470:CDS
GCAGCAGCAAATCAAATATT+TGG 0.183562 3_3:-61513531 None:intergenic
TCAAACAAAACCACAGTAAA+TGG 0.209228 3_3:-61512663 None:intergenic
TTAACTATGGTAAGTGATTA+TGG 0.209696 3_3:-61507307 None:intergenic
AACTAACAAGTTAGACATTT+TGG 0.211920 3_3:+61507154 Msa0462470:five_prime_UTR
ACTTGGAAGGGGTCAGTTTC+AGG 0.235139 3_3:+61510144 Msa0462470:CDS
CTAAAAGCCCGGATGATTAT+TGG 0.258261 3_3:+61511741 Msa0462470:CDS
TGACACTATCTTCATTGATT+TGG 0.258424 3_3:+61513735 Msa0462470:CDS
GACAACCGGGAGGGGAAATA+AGG 0.261671 3_3:+61510084 Msa0462470:CDS
GTTCAGGATCAACAAAATTA+TGG 0.267481 3_3:-61507924 None:intergenic
GTTCTGCTAGAATTCTTTAT+AGG 0.277808 3_3:+61507983 Msa0462470:CDS
CATTCAGTGAGCAAGTTATT+AGG 0.278138 3_3:+61512576 Msa0462470:CDS
TCTATCCTGTTGAGCAGTTC+TGG 0.284706 3_3:-61513171 None:intergenic
TGTTCAGTCCACGCTTAAAA+TGG 0.298769 3_3:+61511778 Msa0462470:CDS
GGAAGGAAGAAAGAAGAAAA+AGG 0.315182 3_3:-61507232 None:intergenic
AGAAGAATGTTAAATATATC+TGG 0.315702 3_3:-61512705 None:intergenic
CCAGCTTCACCCAGAAGAAT+TGG 0.326428 3_3:-61509588 None:intergenic
TCAACTTCTCGGCCAATAAC+TGG 0.328094 3_3:-61509519 None:intergenic
GGGCTGATTGATCCAGTTAT+TGG 0.329565 3_3:+61509507 Msa0462470:CDS
TTCTTTGAACTTCAACTTCT+CGG 0.329689 3_3:-61509530 None:intergenic
GTTAGACATGAGTGAATATA+TGG 0.330047 3_3:+61512548 Msa0462470:CDS
GCCACAGCTGCCAACTGATC+TGG 0.335594 3_3:-61509211 None:intergenic
CTGTAAAGTCAAAGATGTTT+TGG 0.335668 3_3:+61513885 Msa0462470:three_prime_UTR
ACCAACTACGTTGATGATAA+TGG 0.339054 3_3:+61507811 Msa0462470:CDS
CACGGCGGTTTCAACCTGTT+TGG 0.339833 3_3:+61511114 Msa0462470:CDS
CTTGGATGTAGGACTATTAA+TGG 0.344112 3_3:+61509843 Msa0462470:CDS
TGATGCAATTAAGATACTTA+TGG 0.355715 3_3:+61511520 Msa0462470:CDS
GAGATCTCGAGTCGGCCTTC+GGG 0.356437 3_3:+61512245 Msa0462470:CDS
CTTAAATATTATGGTGCATC+TGG 0.366184 3_3:+61511893 Msa0462470:CDS
TCAGCAGTGAGCTGCTGAAC+TGG 0.366254 3_3:-61512129 None:intergenic
GACTGGCAATTCTTATTTCT+CGG 0.376702 3_3:+61509637 Msa0462470:CDS
GAGAGCATGCTTAAATATTA+TGG 0.380084 3_3:+61511884 Msa0462470:CDS
TCTATATCACAAAGGCGTTC+TGG 0.385165 3_3:+61509310 Msa0462470:CDS
GACAAACCAACATCATATAA+TGG 0.386817 3_3:+61513105 Msa0462470:CDS
CTCACTGCCCGTGCAAGTGT+TGG 0.393374 3_3:+61509486 Msa0462470:CDS
TTCGTCCAGAACTGCTCAAC+AGG 0.394949 3_3:+61513166 Msa0462470:CDS
ATGAGGTCAATAGCTTTATC+AGG 0.395259 3_3:-61511647 None:intergenic
TTGAGAGTGAAAATTAACTA+TGG 0.395355 3_3:-61507320 None:intergenic
GGTGGTTGCGGTGGTGGAAG+AGG 0.395523 3_3:-61507428 None:intergenic
TTACTATTCTGTGGCCCAAC+TGG 0.398909 3_3:+61512291 Msa0462470:CDS
TTCAGGAAACGGACATGATA+AGG 0.400120 3_3:+61512526 Msa0462470:intron
CAAACACTAAGCTAACAAAT+AGG 0.400507 3_3:-61513910 None:intergenic
GGTTGTGGTGGTTGCGGTGG+TGG 0.402290 3_3:-61507434 None:intergenic
CCAATTCTTCTGGGTGAAGC+TGG 0.408826 3_3:+61509588 Msa0462470:CDS
CTATGAGACCAAGCATGATA+TGG 0.410636 3_3:-61507687 None:intergenic
CTTCTTCAATTAATGGAAGA+TGG 0.413133 3_3:+61512723 Msa0462470:CDS
CTTGTTCAATCAGGGACAAC+CGG 0.414239 3_3:+61510070 Msa0462470:CDS
GTTCACACACTTGTTCAATC+AGG 0.415130 3_3:+61510061 Msa0462470:CDS
GCGGTGGTGGAAGAGGGTTC+CGG 0.418091 3_3:-61507421 None:intergenic
AAACTAAGGGAACGTGTGAT+TGG 0.431441 3_3:+61512183 Msa0462470:CDS
AACTGAACTAGCAAAGTCTT+TGG 0.432809 3_3:+61512323 Msa0462470:CDS
TGGCCATCTTACGGATTCTC+AGG 0.433088 3_3:+61512743 Msa0462470:CDS
ATTTCTCTCCAATAATCATC+CGG 0.433200 3_3:-61511749 None:intergenic
AGAGATCTCGAGTCGGCCTT+CGG 0.433232 3_3:+61512244 Msa0462470:CDS
TTCTGGGTGAAGCTGGAGTT+GGG 0.435845 3_3:+61509595 Msa0462470:CDS
AGGAAGGAATAGAGTGAGAA+TGG 0.436220 3_3:-61507200 None:intergenic
GATGCAATTAAGATACTTAT+GGG 0.437666 3_3:+61511521 Msa0462470:CDS
CTTCTGGGTGAAGCTGGAGT+TGG 0.438875 3_3:+61509594 Msa0462470:CDS
CAGCAAGATACATAGTTGAT+AGG 0.439208 3_3:+61511618 Msa0462470:CDS
AGTCAAGGACCTTGTCTGTA+AGG 0.440929 3_3:+61513606 Msa0462470:CDS
CTAACTTGTTAGTTATTGCT+TGG 0.444081 3_3:-61507145 None:intergenic
AACAGCTATTGCAGAGGGAC+TGG 0.445401 3_3:+61509620 Msa0462470:CDS
CTCGGCTCATCAATCCAAAC+AGG 0.446079 3_3:-61511128 None:intergenic
TCACAAAGGCGTTCTGGTGC+AGG 0.451507 3_3:+61509316 Msa0462470:CDS
TGCTGCTGCAAGACGTGAAA+AGG 0.453555 3_3:+61513545 Msa0462470:CDS
TCACTGCCCGTGCAAGTGTT+GGG 0.455417 3_3:+61509487 Msa0462470:CDS
AAGAAGTCTTCTGTTAGATC+TGG 0.455467 3_3:+61512155 Msa0462470:CDS
AGCCAGGTTATGTGTCCAAT+GGG 0.456669 3_3:+61509275 Msa0462470:CDS
TTCTGTGGCCCAACTGGCGT+TGG 0.456768 3_3:+61512297 Msa0462470:CDS
GCAAGCAATGCTTCAGCCAA+TGG 0.458378 3_3:-61513694 None:intergenic
GTGAGTGAATGCGGCGGAAG+CGG 0.460759 3_3:-61507399 None:intergenic
GGGGTCTAGTGCCATTGCTA+AGG 0.463476 3_3:+61513047 Msa0462470:CDS
AAAAGCAATCCAATTCTTCT+GGG 0.464852 3_3:+61509579 Msa0462470:CDS
ACAGAATAGTAAAGTTGCTA+TGG 0.465089 3_3:-61512280 None:intergenic
ACAGTTGCTTCCCTCTGGTC+AGG 0.465119 3_3:+61512102 Msa0462470:CDS
AATGGAAGATGGCCATCTTA+CGG 0.465250 3_3:+61512734 Msa0462470:CDS
CACCTCAAAATCAATTCCTC+GGG 0.465538 3_3:-61513575 None:intergenic
TGAGTATGCGGTGGCGGTTG+TGG 0.466946 3_3:-61507449 None:intergenic
TTCAATCCATTATATGATGT+TGG 0.467114 3_3:-61513111 None:intergenic
ATAAAAGATATAATAGAGTC+AGG 0.467220 3_3:+61509913 Msa0462470:CDS
GCTAGAGATGGTAGAGAGCC+AGG 0.468940 3_3:+61509259 Msa0462470:CDS
TAGATCTGGATAATAAACTA+AGG 0.469027 3_3:+61512169 Msa0462470:CDS
GTGGTTGCGGTGGTGGAAGA+GGG 0.470187 3_3:-61507427 None:intergenic
CTTCTTCATCACTTAACCCA+TGG 0.471963 3_3:+61507356 Msa0462470:CDS
GACAAAACGTGTCATGTCCT+TGG 0.472119 3_3:+61509825 Msa0462470:intron
GATGTAGGACTATTAATGGC+TGG 0.472478 3_3:+61509847 Msa0462470:CDS
TAAAGTTGCTATGGGTCTAC+CGG 0.474304 3_3:-61512271 None:intergenic
CCCAGATCAGTTGGCAGCTG+TGG 0.474446 3_3:+61509210 Msa0462470:CDS
TGCTTAAACCTTCACTTGGA+AGG 0.478401 3_3:+61510131 Msa0462470:CDS
CAATCAGGGACAACCGGGAG+GGG 0.479272 3_3:+61510076 Msa0462470:CDS
CTAATAACTTGCTCACTGAA+TGG 0.479808 3_3:-61512575 None:intergenic
GGGAGGGGAAATAAGGGTTC+TGG 0.480130 3_3:+61510091 Msa0462470:CDS
CTACCACTATTGATGAATAC+AGG 0.481152 3_3:+61511063 Msa0462470:CDS
GCAACTGTTGCTATATGATC+AGG 0.483203 3_3:-61512087 None:intergenic
ACAACCGGGAGGGGAAATAA+GGG 0.483340 3_3:+61510085 Msa0462470:CDS
GTTATGTTGGTTATGGAGAA+GGG 0.484795 3_3:+61512610 Msa0462470:CDS
TCCATTATCATCAACGTAGT+TGG 0.485415 3_3:-61507812 None:intergenic
TCTGTGGCCCAACTGGCGTT+GGG 0.486174 3_3:+61512298 Msa0462470:CDS
ACTGGCAATTCTTATTTCTC+GGG 0.487942 3_3:+61509638 Msa0462470:CDS
CAAGCAATGCTTCAGCCAAT+GGG 0.488172 3_3:-61513693 None:intergenic
GAGACAAAACGTTCTCAAAA+CGG 0.488248 3_3:+61507721 Msa0462470:CDS
TCGTTCGAATATTGAAGTTA+CGG 0.489169 3_3:-61507584 None:intergenic
TCTCTTCACAGATCTAGAAA+TGG 0.490279 3_3:-61512226 None:intergenic
AGCGGTTGGAAGTGAGAGTT+GGG 0.490437 3_3:-61507381 None:intergenic
GTACAATGGTTCATTACTCA+AGG 0.490996 3_3:-61513826 None:intergenic
AGAACCCTTATTTCCCCTCC+CGG 0.496013 3_3:-61510089 None:intergenic
GATAGACACACCAATAGAAA+AGG 0.496212 3_3:-61509672 None:intergenic
TATAACAAGGGTGTTACCAT+TGG 0.496267 3_3:-61513761 None:intergenic
GCTTAAACCTTCACTTGGAA+GGG 0.497310 3_3:+61510132 Msa0462470:CDS
ATATACAGAAGATGCCATAA+AGG 0.500415 3_3:+61511580 Msa0462470:CDS
GGTGGCGGTTGTGGTGGTTG+CGG 0.500601 3_3:-61507440 None:intergenic
TCTCCATAACCAACATAACC+TGG 0.501731 3_3:-61512606 None:intergenic
GAGGTCTAGCACCATATGTT+GGG 0.502338 3_3:-61513639 None:intergenic
GGATCTGCCGCTAAAACAAA+AGG 0.502472 3_3:+61509337 Msa0462470:CDS
CCACAGCTGCCAACTGATCT+GGG 0.502623 3_3:-61509210 None:intergenic
TAGCAACAGTTGCTTCCCTC+TGG 0.507727 3_3:+61512097 Msa0462470:CDS
GTACCAAAAGAAAACGGAAC+AGG 0.507840 3_3:-61507856 None:intergenic
ATGTAGGACTATTAATGGCT+GGG 0.511098 3_3:+61509848 Msa0462470:CDS
AAGCGGTTGGAAGTGAGAGT+TGG 0.513262 3_3:-61507382 None:intergenic
AAACTTAATTGCAAACCCAT+TGG 0.514028 3_3:+61513678 Msa0462470:CDS
GAAGGCTATGACCCAACATA+TGG 0.515298 3_3:+61513628 Msa0462470:CDS
TACGCACACCATATCATGCT+TGG 0.519026 3_3:+61507679 Msa0462470:CDS
GAAAGAAACGAGAGAGAAGG+TGG 0.519655 3_3:-61507472 None:intergenic
AAGCCTGTATTCATCAATAG+TGG 0.519791 3_3:-61511066 None:intergenic
CGAGTCGGCCTTCGGGATCC+CGG 0.521425 3_3:+61512252 Msa0462470:CDS
TTCATTGATTTGGATGCCAA+TGG 0.522612 3_3:+61513745 Msa0462470:CDS
CTTCCGCCGCATTCACTCAC+CGG 0.523861 3_3:+61507402 Msa0462470:CDS
ATCTGAAATGAAGAAACCTA+TGG 0.528568 3_3:-61513082 None:intergenic
CATATGGTGCTAGACCTCTC+AGG 0.531368 3_3:+61513644 Msa0462470:CDS
ACACCTCAAAATCAATTCCT+CGG 0.532915 3_3:-61513576 None:intergenic
TCATCCCCTTGAAAAGCCAC+AGG 0.534299 3_3:+61513209 Msa0462470:CDS
GCATGATATGGTGTGCGTAA+AGG 0.534330 3_3:-61507675 None:intergenic
TACTTCCTGCTTCATCAATG+AGG 0.539893 3_3:-61511664 None:intergenic
GTGAATGCGGCGGAAGCGGT+TGG 0.540013 3_3:-61507395 None:intergenic
AGAGGTCTAGCACCATATGT+TGG 0.540703 3_3:-61513640 None:intergenic
GGCGGTTGTGGTGGTTGCGG+TGG 0.541218 3_3:-61507437 None:intergenic
GGTTATGTTGGTTATGGAGA+AGG 0.541808 3_3:+61512609 Msa0462470:CDS
GGGTCTAGTGCCATTGCTAA+GGG 0.542537 3_3:+61513048 Msa0462470:CDS
AGGTGGTGAGTATGCGGTGG+CGG 0.542666 3_3:-61507455 None:intergenic
CTTAAACCTTCACTTGGAAG+GGG 0.543263 3_3:+61510133 Msa0462470:CDS
ATTGACCTCATTGATGAAGC+AGG 0.544458 3_3:+61511659 Msa0462470:CDS
CAATCAGCCCAACACTTGCA+CGG 0.544552 3_3:-61509494 None:intergenic
AAGTGAGAGTTGGGAACCAT+GGG 0.544733 3_3:-61507372 None:intergenic
AAAAGAGAGAGGAGAGCTAG+AGG 0.545345 3_3:+61509873 Msa0462470:CDS
TTGCATACTCTCTAAAAGCC+CGG 0.546522 3_3:+61511730 Msa0462470:CDS
AAGGACCTTGTCTGTAAGGA+AGG 0.546851 3_3:+61513610 Msa0462470:CDS
AAAATCAATTCCTCGGGGCA+TGG 0.547293 3_3:-61513569 None:intergenic
CGTGTCATGTCCTTGGATGT+AGG 0.548440 3_3:+61509832 Msa0462470:CDS
ATATAAAGTGCAACCTCACT+CGG 0.551522 3_3:-61511146 None:intergenic
AGGTGAAAGAAGAAGAAGAA+CGG 0.552889 3_3:-61507507 None:intergenic
AAACCTGAGAATCCGTAAGA+TGG 0.553283 3_3:-61512746 None:intergenic
TGAGTCAAGTATGAGTTCAC+TGG 0.553540 3_3:-61511927 None:intergenic
CGTTTAGTACCAAAAGAAAA+CGG 0.553800 3_3:-61507862 None:intergenic
AACTGACCCCTTCCAAGTGA+AGG 0.554059 3_3:-61510139 None:intergenic
CAGAATAGTAAAGTTGCTAT+GGG 0.554764 3_3:-61512279 None:intergenic
GAGCCAGGTTATGTGTCCAA+TGG 0.555649 3_3:+61509274 Msa0462470:CDS
CGGGTCAAACCCAGATCAGT+TGG 0.556987 3_3:+61509201 Msa0462470:CDS
TACTCAAGGGTGACTTGTGT+CGG 0.559111 3_3:-61513812 None:intergenic
CTCCATAACCAACATAACCT+GGG 0.561726 3_3:-61512605 None:intergenic
TTTCTCTCCAATAATCATCC+GGG 0.562344 3_3:-61511748 None:intergenic
AAAGCAACGAAAATATGTTC+AGG 0.563495 3_3:-61507940 None:intergenic
AACTGGAATTCCTGACCAGA+GGG 0.563796 3_3:-61512112 None:intergenic
GAAGTGAGAGTTGGGAACCA+TGG 0.564089 3_3:-61507373 None:intergenic
CTTCTGTATATCTGCACTTG+TGG 0.566189 3_3:-61511568 None:intergenic
TTCACACACTTGTTCAATCA+GGG 0.566651 3_3:+61510062 Msa0462470:CDS
ACCATTGTACAGAAGTAGCC+TGG 0.568735 3_3:+61513839 Msa0462470:three_prime_UTR
GATGAAAGAAACGAGAGAGA+AGG 0.572401 3_3:-61507475 None:intergenic
GCTTTGATGAAAGTTGATGA+TGG 0.573069 3_3:+61507958 Msa0462470:CDS
AATTTGCTTAAACCTTCACT+TGG 0.579870 3_3:+61510127 Msa0462470:CDS
AATCAGCCCAACACTTGCAC+GGG 0.580208 3_3:-61509493 None:intergenic
GATCAAGCTGATTTATAACA+AGG 0.584174 3_3:-61513774 None:intergenic
TTGTTCAATCAGGGACAACC+GGG 0.588641 3_3:+61510071 Msa0462470:CDS
TATGTTGGTTATGGAGAAGG+GGG 0.590352 3_3:+61512612 Msa0462470:CDS
TCAATCAGGGACAACCGGGA+GGG 0.591333 3_3:+61510075 Msa0462470:CDS
AGGGTTCCGGTGAGTGAATG+CGG 0.591951 3_3:-61507408 None:intergenic
AAGGGTCGACACAACTCCAT+AGG 0.595796 3_3:+61513066 Msa0462470:CDS
GGAACGTGTGATTGGACAAG+AGG 0.597583 3_3:+61512191 Msa0462470:CDS
CTTGCTGAAAAGTGCAAGGA+AGG 0.599268 3_3:+61513712 Msa0462470:CDS
GTTTGCAATTAAGTTTACAA+TGG 0.599993 3_3:-61513671 None:intergenic
TGTAGGACTATTAATGGCTG+GGG 0.603871 3_3:+61509849 Msa0462470:CDS
AGATCTGGATAATAAACTAA+GGG 0.604041 3_3:+61512170 Msa0462470:CDS
TGAGGTGTCTGAATCAGTCA+AGG 0.607039 3_3:+61513591 Msa0462470:CDS
TGATGAAGAAGAAACTTGCA+TGG 0.607380 3_3:-61507344 None:intergenic
TGGGTCTACCGGGATCCCGA+AGG 0.609108 3_3:-61512260 None:intergenic
GGTGGTGATGACTTCAAATG+TGG 0.611159 3_3:+61513026 Msa0462470:CDS
CATTAATAGTCCTACATCCA+AGG 0.615573 3_3:-61509842 None:intergenic
GCTCAACAGGATAGATGAAG+TGG 0.616515 3_3:+61513179 Msa0462470:CDS
ATAGCAACTTTACTATTCTG+TGG 0.617864 3_3:+61512282 Msa0462470:CDS
TAGAAGAAAACCATTTACTG+TGG 0.618481 3_3:+61512653 Msa0462470:CDS
ATATAATGGATTGAAATCGA+TGG 0.619461 3_3:+61513119 Msa0462470:CDS
TTATGGTGCATCTGGCATTG+AGG 0.619554 3_3:+61511901 Msa0462470:CDS
TTGGTTGAATCATTGAGATG+AGG 0.619768 3_3:-61507793 None:intergenic
CATAGCCTTCCTTACAGACA+AGG 0.620402 3_3:-61513615 None:intergenic
TACAATGGTTCATTACTCAA+GGG 0.620684 3_3:-61513825 None:intergenic
ACGTGTGATTGGACAAGAGG+AGG 0.625107 3_3:+61512194 Msa0462470:CDS
TGTTTGATTCTTATGTGATG+AGG 0.625400 3_3:+61513927 Msa0462470:three_prime_UTR
ATCAAGCTGATTTATAACAA+GGG 0.625901 3_3:-61513773 None:intergenic
TTGTACAGAAGTAGCCTGGT+AGG 0.629746 3_3:+61513843 Msa0462470:three_prime_UTR
AATGGCATACACGTCACTGA+AGG 0.631785 3_3:-61507182 None:intergenic
GTATGCGGTGGCGGTTGTGG+TGG 0.633005 3_3:-61507446 None:intergenic
GGGAAAACAGCTATTGCAGA+GGG 0.636174 3_3:+61509615 Msa0462470:CDS
GTGGTGATGACTTCAAATGT+GGG 0.637406 3_3:+61513027 Msa0462470:CDS
TTATGTTGGTTATGGAGAAG+GGG 0.637629 3_3:+61512611 Msa0462470:CDS
ATTGCTTGCTGAAAAGTGCA+AGG 0.637883 3_3:+61513708 Msa0462470:CDS
TTCAATCAGGGACAACCGGG+AGG 0.637993 3_3:+61510074 Msa0462470:CDS
AGTTACGGTGAACGTGAACG+TGG 0.638260 3_3:-61507569 None:intergenic
GACTTATATATACACCTACC+AGG 0.638917 3_3:-61513857 None:intergenic
GAACTGGAATTCCTGACCAG+AGG 0.642699 3_3:-61512113 None:intergenic
ATGGCTGGGGCAAAAGAGAG+AGG 0.645640 3_3:+61509862 Msa0462470:CDS
AAAGTTGCTATGGGTCTACC+GGG 0.647341 3_3:-61512270 None:intergenic
GAGAGAAGGTGGTGAGTATG+CGG 0.647717 3_3:-61507461 None:intergenic
TGCTCTATCACAATTCTGCG+TGG 0.649091 3_3:+61509461 Msa0462470:CDS
TTTACAATGGCTCTCCTGAG+AGG 0.650300 3_3:-61513658 None:intergenic
CCAGGTTATGTGTCCAATGG+GGG 0.650317 3_3:+61509277 Msa0462470:CDS
CGATGGTAATTGAAGAACTG+AGG 0.650720 3_3:+61513136 Msa0462470:CDS
TCCATAACCAACATAACCTG+GGG 0.651186 3_3:-61512604 None:intergenic
GCCAGGTTATGTGTCCAATG+GGG 0.659821 3_3:+61509276 Msa0462470:CDS
AAAAGGATAAGGCTTTGGCA+CGG 0.663550 3_3:+61511096 Msa0462470:CDS
TTGGATTGATGAGCCGAGTG+AGG 0.663720 3_3:+61511133 Msa0462470:CDS
ACCAGGCTACTTCTGTACAA+TGG 0.670061 3_3:-61513840 None:intergenic
AGAAGGTGGTGAGTATGCGG+TGG 0.674042 3_3:-61507458 None:intergenic
GTTGTGTCGACCCTTAGCAA+TGG 0.675286 3_3:-61513058 None:intergenic
TGGGAAAACAGCTATTGCAG+AGG 0.677479 3_3:+61509614 Msa0462470:CDS
ACAACAAATCTATATCACAA+AGG 0.686685 3_3:+61509302 Msa0462470:CDS
TGGTGATGACTTCAAATGTG+GGG 0.688027 3_3:+61513028 Msa0462470:CDS
AGGATAAGGCTTTGGCACGG+CGG 0.694664 3_3:+61511099 Msa0462470:CDS
CAACAGGATAGATGAAGTGG+TGG 0.695003 3_3:+61513182 Msa0462470:CDS
ACCTCAAAATCAATTCCTCG+GGG 0.719499 3_3:-61513574 None:intergenic
GTTCCGGTGAGTGAATGCGG+CGG 0.720093 3_3:-61507405 None:intergenic
TCTGTGAAGAGATCTCGAGT+CGG 0.722132 3_3:+61512237 Msa0462470:CDS
GTGAAAAGGACCATGCCCCG+AGG 0.751275 3_3:+61513559 Msa0462470:CDS
CCATAACCAACATAACCTGG+GGG 0.752062 3_3:-61512603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAACATAAAAATTTA+GGG - chr3_3:61512956-61512975 None:intergenic 10.0%
!! AACAATAAACATAAAAATTT+AGG - chr3_3:61512957-61512976 None:intergenic 10.0%
!! ACTTATAATATATTTCCATT+TGG + chr3_3:61508031-61508050 Msa0462470:intron 15.0%
!! CAATTTAAATTCAACTTTAA+AGG + chr3_3:61508480-61508499 Msa0462470:intron 15.0%
!! TAGTTTGAAAAATATTCTTT+GGG + chr3_3:61508930-61508949 Msa0462470:intron 15.0%
!! AACAAAAGAAAAACAAATAT+TGG - chr3_3:61509044-61509063 None:intergenic 15.0%
!! AGATAGAAACATATTAATTA+AGG - chr3_3:61509760-61509779 None:intergenic 15.0%
!! TCTTTGCAATAAATAATTAA+GGG - chr3_3:61511303-61511322 None:intergenic 15.0%
!! TTAAGATTGTTATAGAAAAA+AGG + chr3_3:61511355-61511374 Msa0462470:intron 15.0%
!! AGATCAAATTATGATTAAAA+TGG - chr3_3:61511471-61511490 None:intergenic 15.0%
!!! TTTATTTAGTCATTTTTGTT+TGG + chr3_3:61513329-61513348 Msa0462470:intron 15.0%
!! TTAAATTTAACTGCTTAAAA+CGG - chr3_3:61513376-61513395 None:intergenic 15.0%
!! ATATATTTCCATTTGGTATT+TGG + chr3_3:61508038-61508057 Msa0462470:intron 20.0%
!! AACTTATCAAAGTACATATT+TGG - chr3_3:61508585-61508604 None:intergenic 20.0%
!! ATATGTACTTTGATAAGTTT+CGG + chr3_3:61508586-61508605 Msa0462470:intron 20.0%
!! CTAGTTTGAAAAATATTCTT+TGG + chr3_3:61508929-61508948 Msa0462470:intron 20.0%
!!! TTTGTTTTTCTTTTGTTTTG+TGG + chr3_3:61509047-61509066 Msa0462470:intron 20.0%
!!! GTTTTATGATTTGATTTTGA+TGG + chr3_3:61509381-61509400 Msa0462470:intron 20.0%
!!! TTAATATGTTTCTATCTACT+TGG + chr3_3:61509763-61509782 Msa0462470:intron 20.0%
!!! CTTTTATTAATTTTGTAACG+CGG - chr3_3:61509900-61509919 None:intergenic 20.0%
!! ATAAAAGATATAATAGAGTC+AGG + chr3_3:61509913-61509932 Msa0462470:CDS 20.0%
!! ATAAATATTCAAGTATCACT+TGG - chr3_3:61510212-61510231 None:intergenic 20.0%
!!! TCCATATATTTTCATGTATA+AGG + chr3_3:61510656-61510675 Msa0462470:intron 20.0%
!!! TTTTTGTAATTTTAATTGGG+AGG + chr3_3:61510781-61510800 Msa0462470:intron 20.0%
!!! TTTTGTAATTTTAATTGGGA+GGG + chr3_3:61510782-61510801 Msa0462470:intron 20.0%
!!! ATGAATTTTTCTTGAATAGT+TGG + chr3_3:61510888-61510907 Msa0462470:intron 20.0%
!!! TGATCATTTTTGTATAAGAT+GGG + chr3_3:61510946-61510965 Msa0462470:intron 20.0%
!! CTCTTTGCAATAAATAATTA+AGG - chr3_3:61511304-61511323 None:intergenic 20.0%
!!! TTTTTTTGGCATTAATAATG+AGG + chr3_3:61512388-61512407 Msa0462470:intron 20.0%
!! AGAAGAATGTTAAATATATC+TGG - chr3_3:61512708-61512727 None:intergenic 20.0%
!! TAACATTCTTCTTCAATTAA+TGG + chr3_3:61512716-61512735 Msa0462470:CDS 20.0%
!!! TTTGAAAAACTTGTTCTAAT+AGG + chr3_3:61512975-61512994 Msa0462470:intron 20.0%
!!! TTGAAAAACTTGTTCTAATA+GGG + chr3_3:61512976-61512995 Msa0462470:intron 20.0%
!! AGTTTCATTTAAAAATGCAT+TGG + chr3_3:61513005-61513024 Msa0462470:CDS 20.0%
!! AAGCAGTTAAATTTAAATAC+TGG + chr3_3:61513380-61513399 Msa0462470:intron 20.0%
!! AACTAACAAGTTAGACATTT+TGG + chr3_3:61507154-61507173 Msa0462470:five_prime_UTR 25.0%
!!! TTAGATTTTGAAAGTGTTGA+GGG - chr3_3:61507257-61507276 None:intergenic 25.0%
!!! TTTAGATTTTGAAAGTGTTG+AGG - chr3_3:61507258-61507277 None:intergenic 25.0%
! TTAACTATGGTAAGTGATTA+TGG - chr3_3:61507310-61507329 None:intergenic 25.0%
! TTGAGAGTGAAAATTAACTA+TGG - chr3_3:61507323-61507342 None:intergenic 25.0%
!! GAAGAATTTTGCTTCTTTTT+CGG - chr3_3:61507644-61507663 None:intergenic 25.0%
!!! ATTTGGAGTATTGTTGTTTT+TGG + chr3_3:61508055-61508074 Msa0462470:intron 25.0%
! TGGTTCAAATAAGTTTCTTT+AGG - chr3_3:61508148-61508167 None:intergenic 25.0%
! AGAAACTTATTTGAACCAAA+TGG + chr3_3:61508150-61508169 Msa0462470:intron 25.0%
! ATAACCAAGAAACAAATGTT+GGG + chr3_3:61508258-61508277 Msa0462470:intron 25.0%
!!! GAACTTTTTAAGAATAATGC+TGG + chr3_3:61508312-61508331 Msa0462470:intron 25.0%
! CAAAATCAATCTCAATTTGT+CGG + chr3_3:61508834-61508853 Msa0462470:intron 25.0%
!! TTCTTTGGGCTAAAATTTTA+AGG + chr3_3:61508944-61508963 Msa0462470:intron 25.0%
! ACAACAAATCTATATCACAA+AGG + chr3_3:61509302-61509321 Msa0462470:CDS 25.0%
!! TTTTTCTCATATTCATTCTC+TGG + chr3_3:61509421-61509440 Msa0462470:intron 25.0%
! ACTAGCAATTGTTTATTTGA+TGG - chr3_3:61510251-61510270 None:intergenic 25.0%
!! CAGTTACTTTGAAAAATGTT+GGG - chr3_3:61510340-61510359 None:intergenic 25.0%
!! ACAGTTACTTTGAAAAATGT+TGG - chr3_3:61510341-61510360 None:intergenic 25.0%
! AAGTTGTCTTTATGAAATAC+TGG + chr3_3:61510417-61510436 Msa0462470:intron 25.0%
! AGTTGTCTTTATGAAATACT+GGG + chr3_3:61510418-61510437 Msa0462470:intron 25.0%
! GCCTTATACATGAAAATATA+TGG - chr3_3:61510660-61510679 None:intergenic 25.0%
! ATTCAAGAAAAATTCATCAG+AGG - chr3_3:61510885-61510904 None:intergenic 25.0%
! GTTCAATTATATTATGCAGT+CGG + chr3_3:61510910-61510929 Msa0462470:intron 25.0%
!!! GTGATCATTTTTGTATAAGA+TGG + chr3_3:61510945-61510964 Msa0462470:intron 25.0%
! TTATTCATAGTGACAAGTTA+TGG - chr3_3:61511016-61511035 None:intergenic 25.0%
! ATCAAATGTACCAAGTTTAT+TGG + chr3_3:61511387-61511406 Msa0462470:intron 25.0%
! TGATGCAATTAAGATACTTA+TGG + chr3_3:61511520-61511539 Msa0462470:CDS 25.0%
! GATGCAATTAAGATACTTAT+GGG + chr3_3:61511521-61511540 Msa0462470:CDS 25.0%
!!! GTGTTCTTTTTTCATCTTAA+AGG - chr3_3:61511705-61511724 None:intergenic 25.0%
! AAAAGAAAGAATTCTGCTTT+GGG - chr3_3:61511996-61512015 None:intergenic 25.0%
! TAGATCTGGATAATAAACTA+AGG + chr3_3:61512169-61512188 Msa0462470:CDS 25.0%
! AGATCTGGATAATAAACTAA+GGG + chr3_3:61512170-61512189 Msa0462470:CDS 25.0%
! GATGTGAATCTTAATTTACT+AGG + chr3_3:61512778-61512797 Msa0462470:intron 25.0%
! GAGAAAGTTTCATGTTTAAA+GGG - chr3_3:61512814-61512833 None:intergenic 25.0%
! AGAGAAAGTTTCATGTTTAA+AGG - chr3_3:61512815-61512834 None:intergenic 25.0%
! TTAAACATGAAACTTTCTCT+TGG + chr3_3:61512815-61512834 Msa0462470:intron 25.0%
! CATTTCTATATCTTCCTTTA+CGG + chr3_3:61512838-61512857 Msa0462470:intron 25.0%
! TTCATTTAAAAATGCATTGG+TGG + chr3_3:61513008-61513027 Msa0462470:CDS 25.0%
! TTCAATCCATTATATGATGT+TGG - chr3_3:61513114-61513133 None:intergenic 25.0%
!!! ATATAATGGATTGAAATCGA+TGG + chr3_3:61513119-61513138 Msa0462470:CDS 25.0%
! AGCATACACATAAAAAAACT+TGG - chr3_3:61513438-61513457 None:intergenic 25.0%
! GTTTGCAATTAAGTTTACAA+TGG - chr3_3:61513674-61513693 None:intergenic 25.0%
!! ATCAAGCTGATTTATAACAA+GGG - chr3_3:61513776-61513795 None:intergenic 25.0%
GAAAGAAGAAAAAGGAAGAA+AGG - chr3_3:61507227-61507246 None:intergenic 30.0%
!!! TAGATTTTGAAAGTGTTGAG+GGG - chr3_3:61507256-61507275 None:intergenic 30.0%
TCGTTCGAATATTGAAGTTA+CGG - chr3_3:61507587-61507606 None:intergenic 30.0%
CGTTTAGTACCAAAAGAAAA+CGG - chr3_3:61507865-61507884 None:intergenic 30.0%
GTTCAGGATCAACAAAATTA+TGG - chr3_3:61507927-61507946 None:intergenic 30.0%
AAAGCAACGAAAATATGTTC+AGG - chr3_3:61507943-61507962 None:intergenic 30.0%
GTTCTGCTAGAATTCTTTAT+AGG + chr3_3:61507983-61508002 Msa0462470:CDS 30.0%
ACAATACTCCAAATACCAAA+TGG - chr3_3:61508049-61508068 None:intergenic 30.0%
GTTTCTTGGTTATCATTGAT+TGG - chr3_3:61508251-61508270 None:intergenic 30.0%
GATAACCAAGAAACAAATGT+TGG + chr3_3:61508257-61508276 Msa0462470:intron 30.0%
TAGTCTGACAACCAATTAAA+TGG - chr3_3:61508406-61508425 None:intergenic 30.0%
ATGAACTATGTCATATTGTC+TGG - chr3_3:61508650-61508669 None:intergenic 30.0%
AGACAATATGACATAGTTCA+TGG + chr3_3:61508649-61508668 Msa0462470:intron 30.0%
CCAAAATACCATTTGTCTTA+CGG + chr3_3:61508758-61508777 Msa0462470:intron 30.0%
!!! TTGTCGGTGAAACAATTTTT+TGG + chr3_3:61508850-61508869 Msa0462470:intron 30.0%
!!! TGTCGGTGAAACAATTTTTT+GGG + chr3_3:61508851-61508870 Msa0462470:intron 30.0%
AAACTAGTTATGCAACTCAA+AGG - chr3_3:61508916-61508935 None:intergenic 30.0%
!!! CATTAGCTTTTTAAAGAGTG+TGG + chr3_3:61508997-61509016 Msa0462470:intron 30.0%
TTGCATACTAGCAACATTAA+TGG - chr3_3:61509168-61509187 None:intergenic 30.0%
TATGCAAATGATTTCAGACT+CGG + chr3_3:61509181-61509200 Msa0462470:intron 30.0%
!!! TTTCTTGCCTTTTGTTTTAG+CGG - chr3_3:61509347-61509366 None:intergenic 30.0%
!! GATTTGATTTTGATGGTTGA+AGG + chr3_3:61509388-61509407 Msa0462470:intron 30.0%
TTCTTTGAACTTCAACTTCT+CGG - chr3_3:61509533-61509552 None:intergenic 30.0%
!!! TTGGATTGCTTTTTGTCTTT+CGG - chr3_3:61509572-61509591 None:intergenic 30.0%
AAAAAGCAATCCAATTCTTC+TGG + chr3_3:61509578-61509597 Msa0462470:CDS 30.0%
AAAAGCAATCCAATTCTTCT+GGG + chr3_3:61509579-61509598 Msa0462470:CDS 30.0%
GAGTTGTGTTAATATATGTG+TGG + chr3_3:61509964-61509983 Msa0462470:intron 30.0%
! AATTTGCTTAAACCTTCACT+TGG + chr3_3:61510127-61510146 Msa0462470:CDS 30.0%
GCTAGTAACGTATAAGATTA+AGG + chr3_3:61510265-61510284 Msa0462470:intron 30.0%
ACGTATAAGATTAAGGTTAG+AGG + chr3_3:61510272-61510291 Msa0462470:intron 30.0%
CAAGATTAGCATTTAACATC+TGG + chr3_3:61510367-61510386 Msa0462470:intron 30.0%
! TTCTAGTACATGTAACCTTT+TGG - chr3_3:61510540-61510559 None:intergenic 30.0%
AGTTATATTCAACAACGCTA+AGG + chr3_3:61510696-61510715 Msa0462470:intron 30.0%
!! ATACAGGCTTCATTTTGAAA+AGG + chr3_3:61511079-61511098 Msa0462470:CDS 30.0%
!! GCTTCATTTTGAAAAGGATA+AGG + chr3_3:61511085-61511104 Msa0462470:CDS 30.0%
!! TTTTGAAAAGGATAAGGCTT+TGG + chr3_3:61511091-61511110 Msa0462470:CDS 30.0%
ATTGCAAAGAGAGAAATAGA+TGG + chr3_3:61511313-61511332 Msa0462470:intron 30.0%
!! ACCAAGTTTATTGGTTTGTT+TGG + chr3_3:61511396-61511415 Msa0462470:intron 30.0%
ACCAAACAAACCAATAAACT+TGG - chr3_3:61511400-61511419 None:intergenic 30.0%
ATATACAGAAGATGCCATAA+AGG + chr3_3:61511580-61511599 Msa0462470:CDS 30.0%
ATTTCTCTCCAATAATCATC+CGG - chr3_3:61511752-61511771 None:intergenic 30.0%
AGTTGAAATTTCTTACTCTC+AGG + chr3_3:61511856-61511875 Msa0462470:intron 30.0%
! GAGAGCATGCTTAAATATTA+TGG + chr3_3:61511884-61511903 Msa0462470:CDS 30.0%
CTTAAATATTATGGTGCATC+TGG + chr3_3:61511893-61511912 Msa0462470:CDS 30.0%
CAAAAGAAAGAATTCTGCTT+TGG - chr3_3:61511997-61512016 None:intergenic 30.0%
TGTGCATATCTATCTAGATT+TGG + chr3_3:61512015-61512034 Msa0462470:intron 30.0%
!!! ATCTAGATTTGGTTTTTGAG+TGG + chr3_3:61512026-61512045 Msa0462470:intron 30.0%
! CTGACATGTTATTGTGTTTT+AGG + chr3_3:61512049-61512068 Msa0462470:intron 30.0%
!! GTTTTAGGTGTATAGAAGTT+AGG + chr3_3:61512064-61512083 Msa0462470:intron 30.0%
CAGAATAGTAAAGTTGCTAT+GGG - chr3_3:61512282-61512301 None:intergenic 30.0%
ACAGAATAGTAAAGTTGCTA+TGG - chr3_3:61512283-61512302 None:intergenic 30.0%
ATAGCAACTTTACTATTCTG+TGG + chr3_3:61512282-61512301 Msa0462470:CDS 30.0%
TCCTGAAATGATAGTATGAA+AGG - chr3_3:61512513-61512532 None:intergenic 30.0%
CATACTATCATTTCAGGAAA+CGG + chr3_3:61512515-61512534 Msa0462470:intron 30.0%
GTTAGACATGAGTGAATATA+TGG + chr3_3:61512548-61512567 Msa0462470:CDS 30.0%
! TGGTTTTCTTCTAATAGCTT+CGG - chr3_3:61512646-61512665 None:intergenic 30.0%
TAGAAGAAAACCATTTACTG+TGG + chr3_3:61512653-61512672 Msa0462470:CDS 30.0%
TCAAACAAAACCACAGTAAA+TGG - chr3_3:61512666-61512685 None:intergenic 30.0%
CTTCTTCAATTAATGGAAGA+TGG + chr3_3:61512723-61512742 Msa0462470:CDS 30.0%
ATTAAGATTCACATCAGCAT+CGG - chr3_3:61512773-61512792 None:intergenic 30.0%
! ATCTGAAATGAAGAAACCTA+TGG - chr3_3:61513085-61513104 None:intergenic 30.0%
GACAAACCAACATCATATAA+TGG + chr3_3:61513105-61513124 Msa0462470:CDS 30.0%
AAACTTAATTGCAAACCCAT+TGG + chr3_3:61513678-61513697 Msa0462470:CDS 30.0%
! TGACACTATCTTCATTGATT+TGG + chr3_3:61513735-61513754 Msa0462470:CDS 30.0%
! GATCAAGCTGATTTATAACA+AGG - chr3_3:61513777-61513796 None:intergenic 30.0%
TACAATGGTTCATTACTCAA+GGG - chr3_3:61513828-61513847 None:intergenic 30.0%
! CTGTAAAGTCAAAGATGTTT+TGG + chr3_3:61513885-61513904 Msa0462470:three_prime_UTR 30.0%
CAAACACTAAGCTAACAAAT+AGG - chr3_3:61513913-61513932 None:intergenic 30.0%
TGTTTGATTCTTATGTGATG+AGG + chr3_3:61513927-61513946 Msa0462470:three_prime_UTR 30.0%
AAAAAGGAAGAAAGGAAGGA+AGG - chr3_3:61507219-61507238 None:intergenic 35.0%
GAAGAAAAAGGAAGAAAGGA+AGG - chr3_3:61507223-61507242 None:intergenic 35.0%
GGAAGGAAGAAAGAAGAAAA+AGG - chr3_3:61507235-61507254 None:intergenic 35.0%
TGATGAAGAAGAAACTTGCA+TGG - chr3_3:61507347-61507366 None:intergenic 35.0%
AGGTGAAAGAAGAAGAAGAA+CGG - chr3_3:61507510-61507529 None:intergenic 35.0%
!! TGTTTTTGTTGATGTGAGTG+AGG - chr3_3:61507530-61507549 None:intergenic 35.0%
GAGACAAAACGTTCTCAAAA+CGG + chr3_3:61507721-61507740 Msa0462470:CDS 35.0%
! CAAAACGGTTTTCTTGATTC+TGG + chr3_3:61507736-61507755 Msa0462470:CDS 35.0%
TTGGTTGAATCATTGAGATG+AGG - chr3_3:61507796-61507815 None:intergenic 35.0%
!! ACCAACTACGTTGATGATAA+TGG + chr3_3:61507811-61507830 Msa0462470:CDS 35.0%
TCCATTATCATCAACGTAGT+TGG - chr3_3:61507815-61507834 None:intergenic 35.0%
!! GCTTTGATGAAAGTTGATGA+TGG + chr3_3:61507958-61507977 Msa0462470:CDS 35.0%
! ATAGCCCAACATTTGTTTCT+TGG - chr3_3:61508265-61508284 None:intergenic 35.0%
TCTGACAACCAATTAAATGG+AGG - chr3_3:61508403-61508422 None:intergenic 35.0%
ATATTTGGAAACACAGCCAA+TGG - chr3_3:61508570-61508589 None:intergenic 35.0%
! TGAGATTGGTAATTGGGATT+TGG + chr3_3:61508610-61508629 Msa0462470:intron 35.0%
! CCGTAAGACAAATGGTATTT+TGG - chr3_3:61508761-61508780 None:intergenic 35.0%
! ACCATTTGTCTTACGGTTTT+AGG + chr3_3:61508765-61508784 Msa0462470:intron 35.0%
ACCTAAAACCGTAAGACAAA+TGG - chr3_3:61508769-61508788 None:intergenic 35.0%
!! ATTTTGACCAGAGTATGCAA+GGG - chr3_3:61508820-61508839 None:intergenic 35.0%
ACTCAAAGGACTTATAAACC+AGG - chr3_3:61508902-61508921 None:intergenic 35.0%
! GTTTTGTGGCAATAATGATC+TGG + chr3_3:61509061-61509080 Msa0462470:intron 35.0%
ATGCAAATGATTTCAGACTC+GGG + chr3_3:61509182-61509201 Msa0462470:intron 35.0%
TTCAAGACTACAAAAAGAGC+TGG + chr3_3:61509237-61509256 Msa0462470:CDS 35.0%
! GACTGGCAATTCTTATTTCT+CGG + chr3_3:61509637-61509656 Msa0462470:CDS 35.0%
! ACTGGCAATTCTTATTTCTC+GGG + chr3_3:61509638-61509657 Msa0462470:CDS 35.0%
! AGAAGTTGCTCCTTTTCTAT+TGG + chr3_3:61509662-61509681 Msa0462470:CDS 35.0%
GATAGACACACCAATAGAAA+AGG - chr3_3:61509675-61509694 None:intergenic 35.0%
CATTAATAGTCCTACATCCA+AGG - chr3_3:61509845-61509864 None:intergenic 35.0%
CTTGGATGTAGGACTATTAA+TGG + chr3_3:61509843-61509862 Msa0462470:CDS 35.0%
ATGTAGGACTATTAATGGCT+GGG + chr3_3:61509848-61509867 Msa0462470:CDS 35.0%
!!! AGAGGATTGTTTTAGCTCAT+CGG + chr3_3:61509996-61510015 Msa0462470:intron 35.0%
TTCACACACTTGTTCAATCA+GGG + chr3_3:61510062-61510081 Msa0462470:CDS 35.0%
AACTAGCAGATGAGATTACA+GGG - chr3_3:61510180-61510199 None:intergenic 35.0%
AAACTAGCAGATGAGATTAC+AGG - chr3_3:61510181-61510200 None:intergenic 35.0%
TCAAGTATCACTTGGAACAA+AGG - chr3_3:61510204-61510223 None:intergenic 35.0%
! AGAAGTGTAGTAACTGTAAC+TGG - chr3_3:61510314-61510333 None:intergenic 35.0%
GCATTTAACATCTGGAAAGT+AGG + chr3_3:61510375-61510394 Msa0462470:intron 35.0%
TTAACATCTGGAAAGTAGGA+AGG + chr3_3:61510379-61510398 Msa0462470:intron 35.0%
TGTCTTTATGAAATACTGGG+AGG + chr3_3:61510421-61510440 Msa0462470:intron 35.0%
TAATAGACTCACTGCTTAGA+TGG + chr3_3:61510457-61510476 Msa0462470:intron 35.0%
AGATATGAGTGAGTGTTAAC+TGG + chr3_3:61510483-61510502 Msa0462470:intron 35.0%
TGAGGGCAAATTTGTATGTT+CGG + chr3_3:61510596-61510615 Msa0462470:intron 35.0%
ATGTATAAGGCTGTGAATAC+TGG + chr3_3:61510669-61510688 Msa0462470:intron 35.0%
ATAAAATTCCAACAGCAGAG+AGG - chr3_3:61510754-61510773 None:intergenic 35.0%
! TTGTTTGGAGAGAGTAGTTT+TGG + chr3_3:61510810-61510829 Msa0462470:intron 35.0%
!! GTTTTGGACTTTGAATTCTC+TGG + chr3_3:61510826-61510845 Msa0462470:intron 35.0%
CTACCACTATTGATGAATAC+AGG + chr3_3:61511063-61511082 Msa0462470:CDS 35.0%
AAGCCTGTATTCATCAATAG+TGG - chr3_3:61511069-61511088 None:intergenic 35.0%
TACAAAAGCGACAGTTACAA+AGG - chr3_3:61511207-61511226 None:intergenic 35.0%
! TGAACTGTGTTGTTGTGTAT+AGG + chr3_3:61511496-61511515 Msa0462470:intron 35.0%
CAGCAAGATACATAGTTGAT+AGG + chr3_3:61511618-61511637 Msa0462470:CDS 35.0%
!! ATGAGGTCAATAGCTTTATC+AGG - chr3_3:61511650-61511669 None:intergenic 35.0%
TTTCTCTCCAATAATCATCC+GGG - chr3_3:61511751-61511770 None:intergenic 35.0%
AAGAAGTCTTCTGTTAGATC+TGG + chr3_3:61512155-61512174 Msa0462470:CDS 35.0%
TCTCTTCACAGATCTAGAAA+TGG - chr3_3:61512229-61512248 None:intergenic 35.0%
AACTGAACTAGCAAAGTCTT+TGG + chr3_3:61512323-61512342 Msa0462470:CDS 35.0%
!!! TCACACAAGGTGTGTTTTTT+TGG + chr3_3:61512374-61512393 Msa0462470:intron 35.0%
CATTTCAGAACATCGAAAAG+AGG - chr3_3:61512435-61512454 None:intergenic 35.0%
GCCTTTCATACTATCATTTC+AGG + chr3_3:61512509-61512528 Msa0462470:intron 35.0%
!! CTAATAACTTGCTCACTGAA+TGG - chr3_3:61512578-61512597 None:intergenic 35.0%
CATTCAGTGAGCAAGTTATT+AGG + chr3_3:61512576-61512595 Msa0462470:CDS 35.0%
! GTTATGTTGGTTATGGAGAA+GGG + chr3_3:61512610-61512629 Msa0462470:CDS 35.0%
! TTATGTTGGTTATGGAGAAG+GGG + chr3_3:61512611-61512630 Msa0462470:CDS 35.0%
GCAGCAGCAAATCAAATATT+TGG - chr3_3:61513534-61513553 None:intergenic 35.0%
ACACCTCAAAATCAATTCCT+CGG - chr3_3:61513579-61513598 None:intergenic 35.0%
!! TTCATTGATTTGGATGCCAA+TGG + chr3_3:61513745-61513764 Msa0462470:CDS 35.0%
!! TATAACAAGGGTGTTACCAT+TGG - chr3_3:61513764-61513783 None:intergenic 35.0%
GTACAATGGTTCATTACTCA+AGG - chr3_3:61513829-61513848 None:intergenic 35.0%
GACTTATATATACACCTACC+AGG - chr3_3:61513860-61513879 None:intergenic 35.0%
AGGAAGGAATAGAGTGAGAA+TGG - chr3_3:61507203-61507222 None:intergenic 40.0%
!!! TTTTGAAAGTGTTGAGGGGA+AGG - chr3_3:61507252-61507271 None:intergenic 40.0%
CTTCTTCATCACTTAACCCA+TGG + chr3_3:61507356-61507375 Msa0462470:CDS 40.0%
GATGAAAGAAACGAGAGAGA+AGG - chr3_3:61507478-61507497 None:intergenic 40.0%
CTATGAGACCAAGCATGATA+TGG - chr3_3:61507690-61507709 None:intergenic 40.0%
GTACCAAAAGAAAACGGAAC+AGG - chr3_3:61507859-61507878 None:intergenic 40.0%
TATCGAACCTGCAACAACTA+AGG - chr3_3:61508220-61508239 None:intergenic 40.0%
TAGTGACAGAAGCTACACTT+TGG + chr3_3:61508539-61508558 Msa0462470:intron 40.0%
TGATAAGTTTCGGCTGAGAT+TGG + chr3_3:61508596-61508615 Msa0462470:intron 40.0%
! TTTCGGCTGAGATTGGTAAT+TGG + chr3_3:61508603-61508622 Msa0462470:intron 40.0%
! TTCGGCTGAGATTGGTAATT+GGG + chr3_3:61508604-61508623 Msa0462470:intron 40.0%
! TTTTGACCAGAGTATGCAAG+GGG - chr3_3:61508819-61508838 None:intergenic 40.0%
!! GATTTTGACCAGAGTATGCA+AGG - chr3_3:61508821-61508840 None:intergenic 40.0%
!!! ATTTTTTGGGCTACCCGAAA+AGG + chr3_3:61508864-61508883 Msa0462470:intron 40.0%
! ATATCATCGTGGCTTGTGAT+TGG + chr3_3:61509088-61509107 Msa0462470:intron 40.0%
!! TCTATATCACAAAGGCGTTC+TGG + chr3_3:61509310-61509329 Msa0462470:CDS 40.0%
GATGTAGGACTATTAATGGC+TGG + chr3_3:61509847-61509866 Msa0462470:CDS 40.0%
TGTAGGACTATTAATGGCTG+GGG + chr3_3:61509849-61509868 Msa0462470:CDS 40.0%
AAAGAATGACATCACCTGCA+AGG - chr3_3:61510030-61510049 None:intergenic 40.0%
GTTCACACACTTGTTCAATC+AGG + chr3_3:61510061-61510080 Msa0462470:CDS 40.0%
TGCTTAAACCTTCACTTGGA+AGG + chr3_3:61510131-61510150 Msa0462470:CDS 40.0%
GCTTAAACCTTCACTTGGAA+GGG + chr3_3:61510132-61510151 Msa0462470:CDS 40.0%
CTTAAACCTTCACTTGGAAG+GGG + chr3_3:61510133-61510152 Msa0462470:CDS 40.0%
!!! CATGTAACCTTTTGGTTCCA+TGG - chr3_3:61510532-61510551 None:intergenic 40.0%
TGCAATCTGTTGCTGAAATG+AGG + chr3_3:61510578-61510597 Msa0462470:intron 40.0%
GCAATCTGTTGCTGAAATGA+GGG + chr3_3:61510579-61510598 Msa0462470:intron 40.0%
!! ATTGGGAGGGATTTGTTGTT+TGG + chr3_3:61510795-61510814 Msa0462470:intron 40.0%
! AAAAGGATAAGGCTTTGGCA+CGG + chr3_3:61511096-61511115 Msa0462470:CDS 40.0%
GACAGTTACAAAGGAGAAGA+GGG - chr3_3:61511198-61511217 None:intergenic 40.0%
CCTTATAGCGACAGCTAAAA+CGG + chr3_3:61511432-61511451 Msa0462470:intron 40.0%
CTTCTGTATATCTGCACTTG+TGG - chr3_3:61511571-61511590 None:intergenic 40.0%
CAAATGAACTGCAGCCTTTA+TGG - chr3_3:61511597-61511616 None:intergenic 40.0%
ATTGACCTCATTGATGAAGC+AGG + chr3_3:61511659-61511678 Msa0462470:CDS 40.0%
TACTTCCTGCTTCATCAATG+AGG - chr3_3:61511667-61511686 None:intergenic 40.0%
! TTGCATACTCTCTAAAAGCC+CGG + chr3_3:61511730-61511749 Msa0462470:CDS 40.0%
CTAAAAGCCCGGATGATTAT+TGG + chr3_3:61511741-61511760 Msa0462470:CDS 40.0%
TGTTCAGTCCACGCTTAAAA+TGG + chr3_3:61511778-61511797 Msa0462470:CDS 40.0%
GTCCACGCTTAAAATGGTAA+TGG + chr3_3:61511784-61511803 Msa0462470:intron 40.0%
! TGCCATTACCATTTTAAGCG+TGG - chr3_3:61511789-61511808 None:intergenic 40.0%
!! CGCTTAAAATGGTAATGGCA+TGG + chr3_3:61511789-61511808 Msa0462470:intron 40.0%
AATTTCTTACTCTCAGGTGC+AGG + chr3_3:61511862-61511881 Msa0462470:intron 40.0%
TGAGTCAAGTATGAGTTCAC+TGG - chr3_3:61511930-61511949 None:intergenic 40.0%
GCAACTGTTGCTATATGATC+AGG - chr3_3:61512090-61512109 None:intergenic 40.0%
AAACTAAGGGAACGTGTGAT+TGG + chr3_3:61512183-61512202 Msa0462470:CDS 40.0%
TAAAGTTGCTATGGGTCTAC+CGG - chr3_3:61512274-61512293 None:intergenic 40.0%
!! TCTTTGGCTGCATGCTATTT+TGG + chr3_3:61512339-61512358 Msa0462470:CDS 40.0%
GATCGGTAAGTATTCACACA+AGG + chr3_3:61512361-61512380 Msa0462470:intron 40.0%
TCTGTACATGTCACATCGAT+TGG + chr3_3:61512467-61512486 Msa0462470:intron 40.0%
TTCAGGAAACGGACATGATA+AGG + chr3_3:61512526-61512545 Msa0462470:intron 40.0%
TCCATAACCAACATAACCTG+GGG - chr3_3:61512607-61512626 None:intergenic 40.0%
CTCCATAACCAACATAACCT+GGG - chr3_3:61512608-61512627 None:intergenic 40.0%
TCTCCATAACCAACATAACC+TGG - chr3_3:61512609-61512628 None:intergenic 40.0%
! GGTTATGTTGGTTATGGAGA+AGG + chr3_3:61512609-61512628 Msa0462470:CDS 40.0%
! TATGTTGGTTATGGAGAAGG+GGG + chr3_3:61512612-61512631 Msa0462470:CDS 40.0%
AATGGAAGATGGCCATCTTA+CGG + chr3_3:61512734-61512753 Msa0462470:CDS 40.0%
AAACCTGAGAATCCGTAAGA+TGG - chr3_3:61512749-61512768 None:intergenic 40.0%
TACTTGCATAGAAGCCGTAA+AGG - chr3_3:61512855-61512874 None:intergenic 40.0%
! GTGGTGATGACTTCAAATGT+GGG + chr3_3:61513027-61513046 Msa0462470:CDS 40.0%
! TGGTGATGACTTCAAATGTG+GGG + chr3_3:61513028-61513047 Msa0462470:CDS 40.0%
CGATGGTAATTGAAGAACTG+AGG + chr3_3:61513136-61513155 Msa0462470:CDS 40.0%
GCCTCCAAAGTGAATATCAT+CGG - chr3_3:61513278-61513297 None:intergenic 40.0%
ACCTCAAAATCAATTCCTCG+GGG - chr3_3:61513577-61513596 None:intergenic 40.0%
CACCTCAAAATCAATTCCTC+GGG - chr3_3:61513578-61513597 None:intergenic 40.0%
! ATTGCTTGCTGAAAAGTGCA+AGG + chr3_3:61513708-61513727 Msa0462470:CDS 40.0%
AATGGCATACACGTCACTGA+AGG - chr3_3:61507185-61507204 None:intergenic 45.0%
AAGTGAGAGTTGGGAACCAT+GGG - chr3_3:61507375-61507394 None:intergenic 45.0%
GAAAGAAACGAGAGAGAAGG+TGG - chr3_3:61507475-61507494 None:intergenic 45.0%
GCATGATATGGTGTGCGTAA+AGG - chr3_3:61507678-61507697 None:intergenic 45.0%
TACGCACACCATATCATGCT+TGG + chr3_3:61507679-61507698 Msa0462470:CDS 45.0%
! CGACCTGTTCCGTTTTCTTT+TGG + chr3_3:61507853-61507872 Msa0462470:CDS 45.0%
TTAGCATCACGTGTCAACAC+CGG + chr3_3:61508177-61508196 Msa0462470:intron 45.0%
TATCGGTCCTTAGTTGTTGC+AGG + chr3_3:61508210-61508229 Msa0462470:intron 45.0%
CACTGCAGCCTCCATTTAAT+TGG + chr3_3:61508392-61508411 Msa0462470:intron 45.0%
CGATCAAAGTGAAACCAACG+CGG - chr3_3:61508517-61508536 None:intergenic 45.0%
! ACAGAAGCTACACTTTGGAG+AGG + chr3_3:61508544-61508563 Msa0462470:intron 45.0%
GGTAATTGGGATTTGGACTC+TGG + chr3_3:61508617-61508636 Msa0462470:intron 45.0%
TTTGACCAGAGTATGCAAGG+GGG - chr3_3:61508818-61508837 None:intergenic 45.0%
! GATATGACAGCAGCCTTTTC+GGG - chr3_3:61508880-61508899 None:intergenic 45.0%
! GGATATGACAGCAGCCTTTT+CGG - chr3_3:61508881-61508900 None:intergenic 45.0%
AAAAGGCTGCTGTCATATCC+TGG + chr3_3:61508881-61508900 Msa0462470:intron 45.0%
! GATCTGGAGCTATATCATCG+TGG + chr3_3:61509077-61509096 Msa0462470:intron 45.0%
CAAAAAGAGCTGGCTAGAGA+TGG + chr3_3:61509247-61509266 Msa0462470:CDS 45.0%
AGCCAGGTTATGTGTCCAAT+GGG + chr3_3:61509275-61509294 Msa0462470:CDS 45.0%
!! AGATTTGTTGTGTCCCCCAT+TGG - chr3_3:61509293-61509312 None:intergenic 45.0%
GGATCTGCCGCTAAAACAAA+AGG + chr3_3:61509337-61509356 Msa0462470:CDS 45.0%
TGCTCTATCACAATTCTGCG+TGG + chr3_3:61509461-61509480 Msa0462470:CDS 45.0%
GGGCTGATTGATCCAGTTAT+TGG + chr3_3:61509507-61509526 Msa0462470:CDS 45.0%
TCAACTTCTCGGCCAATAAC+TGG - chr3_3:61509522-61509541 None:intergenic 45.0%
TGGGAAAACAGCTATTGCAG+AGG + chr3_3:61509614-61509633 Msa0462470:CDS 45.0%
GGGAAAACAGCTATTGCAGA+GGG + chr3_3:61509615-61509634 Msa0462470:CDS 45.0%
AGGCACGTGCAATTACAGAA+GGG - chr3_3:61509740-61509759 None:intergenic 45.0%
AAGGCACGTGCAATTACAGA+AGG - chr3_3:61509741-61509760 None:intergenic 45.0%
GACAAAACGTGTCATGTCCT+TGG + chr3_3:61509825-61509844 Msa0462470:intron 45.0%
AAAAGAGAGAGGAGAGCTAG+AGG + chr3_3:61509873-61509892 Msa0462470:CDS 45.0%
CTTGTTCAATCAGGGACAAC+CGG + chr3_3:61510070-61510089 Msa0462470:CDS 45.0%
TTGTTCAATCAGGGACAACC+GGG + chr3_3:61510071-61510090 Msa0462470:CDS 45.0%
TCTTGCATATCTCCACTCCA+TGG + chr3_3:61510512-61510531 Msa0462470:intron 45.0%
!!! AACCTTTTGGTTCCATGGAG+TGG - chr3_3:61510527-61510546 None:intergenic 45.0%
TGTTAATGCCTCTCTGCTGT+TGG + chr3_3:61510743-61510762 Msa0462470:intron 45.0%
GATGCAATACACTGCACAGA+CGG - chr3_3:61511044-61511063 None:intergenic 45.0%
CGACAGTTACAAAGGAGAAG+AGG - chr3_3:61511199-61511218 None:intergenic 45.0%
!!! CCGTTTTAGCTGTCGCTATA+AGG - chr3_3:61511435-61511454 None:intergenic 45.0%
GACAGCTAAAACGGAACGAA+GGG + chr3_3:61511441-61511460 Msa0462470:intron 45.0%
GCAGCTCATGCAAAGAACAT+CGG - chr3_3:61511826-61511845 None:intergenic 45.0%
TTATGGTGCATCTGGCATTG+AGG + chr3_3:61511901-61511920 Msa0462470:CDS 45.0%
AACTGGAATTCCTGACCAGA+GGG - chr3_3:61512115-61512134 None:intergenic 45.0%
TCTGTGAAGAGATCTCGAGT+CGG + chr3_3:61512237-61512256 Msa0462470:CDS 45.0%
AAAGTTGCTATGGGTCTACC+GGG - chr3_3:61512273-61512292 None:intergenic 45.0%
TTACTATTCTGTGGCCCAAC+TGG + chr3_3:61512291-61512310 Msa0462470:CDS 45.0%
!!! GGCTGCATGCTATTTTGGAT+CGG + chr3_3:61512344-61512363 Msa0462470:CDS 45.0%
AAGTTATTAGGATCTCCCCC+AGG + chr3_3:61512588-61512607 Msa0462470:CDS 45.0%
CCATAACCAACATAACCTGG+GGG - chr3_3:61512606-61512625 None:intergenic 45.0%
! GGTGGTGATGACTTCAAATG+TGG + chr3_3:61513026-61513045 Msa0462470:CDS 45.0%
TCTATCCTGTTGAGCAGTTC+TGG - chr3_3:61513174-61513193 None:intergenic 45.0%
GCTCAACAGGATAGATGAAG+TGG + chr3_3:61513179-61513198 Msa0462470:CDS 45.0%
CAACAGGATAGATGAAGTGG+TGG + chr3_3:61513182-61513201 Msa0462470:CDS 45.0%
! ACGAACCTGTGGCTTTTCAA+GGG - chr3_3:61513217-61513236 None:intergenic 45.0%
! AACGAACCTGTGGCTTTTCA+AGG - chr3_3:61513218-61513237 None:intergenic 45.0%
ACCAAAACTCAACGAACCTG+TGG - chr3_3:61513228-61513247 None:intergenic 45.0%
CTCGCCGATGATATTCACTT+TGG + chr3_3:61513271-61513290 Msa0462470:intron 45.0%
GCCGATGATATTCACTTTGG+AGG + chr3_3:61513274-61513293 Msa0462470:intron 45.0%
AAAATCAATTCCTCGGGGCA+TGG - chr3_3:61513572-61513591 None:intergenic 45.0%
! TGAGGTGTCTGAATCAGTCA+AGG + chr3_3:61513591-61513610 Msa0462470:CDS 45.0%
AGTCAAGGACCTTGTCTGTA+AGG + chr3_3:61513606-61513625 Msa0462470:CDS 45.0%
AAGGACCTTGTCTGTAAGGA+AGG + chr3_3:61513610-61513629 Msa0462470:CDS 45.0%
CATAGCCTTCCTTACAGACA+AGG - chr3_3:61513618-61513637 None:intergenic 45.0%
GAAGGCTATGACCCAACATA+TGG + chr3_3:61513628-61513647 Msa0462470:CDS 45.0%
GAGGTCTAGCACCATATGTT+GGG - chr3_3:61513642-61513661 None:intergenic 45.0%
AGAGGTCTAGCACCATATGT+TGG - chr3_3:61513643-61513662 None:intergenic 45.0%
TTTACAATGGCTCTCCTGAG+AGG - chr3_3:61513661-61513680 None:intergenic 45.0%
CAAGCAATGCTTCAGCCAAT+GGG - chr3_3:61513696-61513715 None:intergenic 45.0%
! CTTGCTGAAAAGTGCAAGGA+AGG + chr3_3:61513712-61513731 Msa0462470:CDS 45.0%
! TACTCAAGGGTGACTTGTGT+CGG - chr3_3:61513815-61513834 None:intergenic 45.0%
ACCATTGTACAGAAGTAGCC+TGG + chr3_3:61513839-61513858 Msa0462470:three_prime_UTR 45.0%
ACCAGGCTACTTCTGTACAA+TGG - chr3_3:61513843-61513862 None:intergenic 45.0%
TTGTACAGAAGTAGCCTGGT+AGG + chr3_3:61513843-61513862 Msa0462470:three_prime_UTR 45.0%
!! TTTAAGAAAATTAATTTATT+TGG + chr3_3:61508285-61508304 Msa0462470:intron 5.0%
!!! ATTTTTTTTGTAATTTTAAT+TGG + chr3_3:61510777-61510796 Msa0462470:intron 5.0%
!!! TTTTTTTTGTAATTTTAATT+GGG + chr3_3:61510778-61510797 Msa0462470:intron 5.0%
!! AATAAAAAAATAAAAATAAG+CGG + chr3_3:61513410-61513429 Msa0462470:intron 5.0%
GAAGTGAGAGTTGGGAACCA+TGG - chr3_3:61507376-61507395 None:intergenic 50.0%
AGCGGTTGGAAGTGAGAGTT+GGG - chr3_3:61507384-61507403 None:intergenic 50.0%
AAGCGGTTGGAAGTGAGAGT+TGG - chr3_3:61507385-61507404 None:intergenic 50.0%
GAGAGAAGGTGGTGAGTATG+CGG - chr3_3:61507464-61507483 None:intergenic 50.0%
AGTTACGGTGAACGTGAACG+TGG - chr3_3:61507572-61507591 None:intergenic 50.0%
ACACCGGTCACGTGAAGTAT+CGG + chr3_3:61508193-61508212 Msa0462470:intron 50.0%
AGGTGTGTTTGTTTCCGCGT+TGG + chr3_3:61508500-61508519 Msa0462470:intron 50.0%
! CTACACTTTGGAGAGGCCAT+TGG + chr3_3:61508551-61508570 Msa0462470:intron 50.0%
GAGCCAGGTTATGTGTCCAA+TGG + chr3_3:61509274-61509293 Msa0462470:CDS 50.0%
GCCAGGTTATGTGTCCAATG+GGG + chr3_3:61509276-61509295 Msa0462470:CDS 50.0%
CCAGGTTATGTGTCCAATGG+GGG + chr3_3:61509277-61509296 Msa0462470:CDS 50.0%
AATCAGCCCAACACTTGCAC+GGG - chr3_3:61509496-61509515 None:intergenic 50.0%
CAATCAGCCCAACACTTGCA+CGG - chr3_3:61509497-61509516 None:intergenic 50.0%
CCAGCTTCACCCAGAAGAAT+TGG - chr3_3:61509591-61509610 None:intergenic 50.0%
CCAATTCTTCTGGGTGAAGC+TGG + chr3_3:61509588-61509607 Msa0462470:CDS 50.0%
TTCTGGGTGAAGCTGGAGTT+GGG + chr3_3:61509595-61509614 Msa0462470:CDS 50.0%
AACAGCTATTGCAGAGGGAC+TGG + chr3_3:61509620-61509639 Msa0462470:CDS 50.0%
CGTGTCATGTCCTTGGATGT+AGG + chr3_3:61509832-61509851 Msa0462470:CDS 50.0%
TATGTGTGGCACACGACAAG+AGG + chr3_3:61509978-61509997 Msa0462470:intron 50.0%
!! CATCGGTTTACACTCCTTGC+AGG + chr3_3:61510013-61510032 Msa0462470:intron 50.0%
ACAACCGGGAGGGGAAATAA+GGG + chr3_3:61510085-61510104 Msa0462470:CDS 50.0%
! AGAACCCTTATTTCCCCTCC+CGG - chr3_3:61510092-61510111 None:intergenic 50.0%
AACTGACCCCTTCCAAGTGA+AGG - chr3_3:61510142-61510161 None:intergenic 50.0%
ACTTGGAAGGGGTCAGTTTC+AGG + chr3_3:61510144-61510163 Msa0462470:CDS 50.0%
! AGGGGTCAGTTTCAGGTGAT+TGG + chr3_3:61510151-61510170 Msa0462470:intron 50.0%
CTCCACTCCATGGAACCAAA+AGG + chr3_3:61510522-61510541 Msa0462470:intron 50.0%
AAGGAGAAGAGGGAGTCACT+TGG - chr3_3:61511188-61511207 None:intergenic 50.0%
CGACAGCTAAAACGGAACGA+AGG + chr3_3:61511440-61511459 Msa0462470:intron 50.0%
TAGCAACAGTTGCTTCCCTC+TGG + chr3_3:61512097-61512116 Msa0462470:CDS 50.0%
GAACTGGAATTCCTGACCAG+AGG - chr3_3:61512116-61512135 None:intergenic 50.0%
GGAACGTGTGATTGGACAAG+AGG + chr3_3:61512191-61512210 Msa0462470:CDS 50.0%
ACGTGTGATTGGACAAGAGG+AGG + chr3_3:61512194-61512213 Msa0462470:CDS 50.0%
! CAGTTTTCCCAACGCCAGTT+GGG - chr3_3:61512308-61512327 None:intergenic 50.0%
! TCAGTTTTCCCAACGCCAGT+TGG - chr3_3:61512309-61512328 None:intergenic 50.0%
! CCCCCAGGTTATGTTGGTTA+TGG + chr3_3:61512603-61512622 Msa0462470:CDS 50.0%
TGGCCATCTTACGGATTCTC+AGG + chr3_3:61512743-61512762 Msa0462470:CDS 50.0%
! GGGTCTAGTGCCATTGCTAA+GGG + chr3_3:61513048-61513067 Msa0462470:CDS 50.0%
! GTTGTGTCGACCCTTAGCAA+TGG - chr3_3:61513061-61513080 None:intergenic 50.0%
AAGGGTCGACACAACTCCAT+AGG + chr3_3:61513066-61513085 Msa0462470:CDS 50.0%
TTCGTCCAGAACTGCTCAAC+AGG + chr3_3:61513166-61513185 Msa0462470:CDS 50.0%
TCATCCCCTTGAAAAGCCAC+AGG + chr3_3:61513209-61513228 Msa0462470:CDS 50.0%
!! CGAACCTGTGGCTTTTCAAG+GGG - chr3_3:61513216-61513235 None:intergenic 50.0%
! GCCACAGGTTCGTTGAGTTT+TGG + chr3_3:61513224-61513243 Msa0462470:intron 50.0%
TGCTGCTGCAAGACGTGAAA+AGG + chr3_3:61513545-61513564 Msa0462470:CDS 50.0%
!! GCCCCGAGGAATTGATTTTG+AGG + chr3_3:61513573-61513592 Msa0462470:CDS 50.0%
! CATATGGTGCTAGACCTCTC+AGG + chr3_3:61513644-61513663 Msa0462470:CDS 50.0%
GCAAGCAATGCTTCAGCCAA+TGG - chr3_3:61513697-61513716 None:intergenic 50.0%
AGGGTTCCGGTGAGTGAATG+CGG - chr3_3:61507411-61507430 None:intergenic 55.0%
AGAAGGTGGTGAGTATGCGG+TGG - chr3_3:61507461-61507480 None:intergenic 55.0%
CGTGATGCTAACGCGCCATT+TGG - chr3_3:61508168-61508187 None:intergenic 55.0%
GGACCGATACTTCACGTGAC+CGG - chr3_3:61508199-61508218 None:intergenic 55.0%
GAACTCCCCCTTGCATACTC+TGG + chr3_3:61508810-61508829 Msa0462470:intron 55.0%
CGGGTCAAACCCAGATCAGT+TGG + chr3_3:61509201-61509220 Msa0462470:CDS 55.0%
CCACAGCTGCCAACTGATCT+GGG - chr3_3:61509213-61509232 None:intergenic 55.0%
GCTAGAGATGGTAGAGAGCC+AGG + chr3_3:61509259-61509278 Msa0462470:CDS 55.0%
CCCCCATTGGACACATAACC+TGG - chr3_3:61509280-61509299 None:intergenic 55.0%
!! TCACAAAGGCGTTCTGGTGC+AGG + chr3_3:61509316-61509335 Msa0462470:CDS 55.0%
TCACTGCCCGTGCAAGTGTT+GGG + chr3_3:61509487-61509506 Msa0462470:CDS 55.0%
CTTCTGGGTGAAGCTGGAGT+TGG + chr3_3:61509594-61509613 Msa0462470:CDS 55.0%
ATGGCTGGGGCAAAAGAGAG+AGG + chr3_3:61509862-61509881 Msa0462470:CDS 55.0%
TTCAATCAGGGACAACCGGG+AGG + chr3_3:61510074-61510093 Msa0462470:CDS 55.0%
TCAATCAGGGACAACCGGGA+GGG + chr3_3:61510075-61510094 Msa0462470:CDS 55.0%
GACAACCGGGAGGGGAAATA+AGG + chr3_3:61510084-61510103 Msa0462470:CDS 55.0%
GGGAGGGGAAATAAGGGTTC+TGG + chr3_3:61510091-61510110 Msa0462470:CDS 55.0%
! AGGATAAGGCTTTGGCACGG+CGG + chr3_3:61511099-61511118 Msa0462470:CDS 55.0%
CACGGCGGTTTCAACCTGTT+TGG + chr3_3:61511114-61511133 Msa0462470:CDS 55.0%
ACAGTTGCTTCCCTCTGGTC+AGG + chr3_3:61512102-61512121 Msa0462470:CDS 55.0%
TCAGCAGTGAGCTGCTGAAC+TGG - chr3_3:61512132-61512151 None:intergenic 55.0%
AGAGATCTCGAGTCGGCCTT+CGG + chr3_3:61512244-61512263 Msa0462470:CDS 55.0%
GGATCTCCCCCAGGTTATGT+TGG + chr3_3:61512597-61512616 Msa0462470:CDS 55.0%
! GGGGTCTAGTGCCATTGCTA+AGG + chr3_3:61513047-61513066 Msa0462470:CDS 55.0%
GTGAGTGAATGCGGCGGAAG+CGG - chr3_3:61507402-61507421 None:intergenic 60.0%
CTTCCGCCGCATTCACTCAC+CGG + chr3_3:61507402-61507421 Msa0462470:CDS 60.0%
GTTCCGGTGAGTGAATGCGG+CGG - chr3_3:61507408-61507427 None:intergenic 60.0%
!! GTGGTTGCGGTGGTGGAAGA+GGG - chr3_3:61507430-61507449 None:intergenic 60.0%
! TGAGTATGCGGTGGCGGTTG+TGG - chr3_3:61507452-61507471 None:intergenic 60.0%
AGGTGGTGAGTATGCGGTGG+CGG - chr3_3:61507458-61507477 None:intergenic 60.0%
CCCAGATCAGTTGGCAGCTG+TGG + chr3_3:61509210-61509229 Msa0462470:CDS 60.0%
GCCACAGCTGCCAACTGATC+TGG - chr3_3:61509214-61509233 None:intergenic 60.0%
CTCACTGCCCGTGCAAGTGT+TGG + chr3_3:61509486-61509505 Msa0462470:CDS 60.0%
CAATCAGGGACAACCGGGAG+GGG + chr3_3:61510076-61510095 Msa0462470:CDS 60.0%
GAGATCTCGAGTCGGCCTTC+GGG + chr3_3:61512245-61512264 Msa0462470:CDS 60.0%
TTCTGTGGCCCAACTGGCGT+TGG + chr3_3:61512297-61512316 Msa0462470:CDS 60.0%
TCTGTGGCCCAACTGGCGTT+GGG + chr3_3:61512298-61512317 Msa0462470:CDS 60.0%
GTGAAAAGGACCATGCCCCG+AGG + chr3_3:61513559-61513578 Msa0462470:CDS 60.0%
GTGAATGCGGCGGAAGCGGT+TGG - chr3_3:61507398-61507417 None:intergenic 65.0%
!! GCGGTGGTGGAAGAGGGTTC+CGG - chr3_3:61507424-61507443 None:intergenic 65.0%
!! GGTGGTTGCGGTGGTGGAAG+AGG - chr3_3:61507431-61507450 None:intergenic 65.0%
GGTTGTGGTGGTTGCGGTGG+TGG - chr3_3:61507437-61507456 None:intergenic 65.0%
! GGTGGCGGTTGTGGTGGTTG+CGG - chr3_3:61507443-61507462 None:intergenic 65.0%
! GTATGCGGTGGCGGTTGTGG+TGG - chr3_3:61507449-61507468 None:intergenic 65.0%
TGGGTCTACCGGGATCCCGA+AGG - chr3_3:61512263-61512282 None:intergenic 65.0%
GGCGGTTGTGGTGGTTGCGG+TGG - chr3_3:61507440-61507459 None:intergenic 70.0%
CGAGTCGGCCTTCGGGATCC+CGG + chr3_3:61512252-61512271 Msa0462470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61507147 61514046 61507147 ID=Msa0462470;Name=Msa0462470
chr3_3 mRNA 61507147 61514046 61507147 ID=Msa0462470-mRNA-1;Parent=Msa0462470;Name=Msa0462470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=199|1|1|1|0.83|0.69|13|192|948
chr3_3 exon 61507147 61508004 61507147 ID=Msa0462470-mRNA-1:exon:13024;Parent=Msa0462470-mRNA-1
chr3_3 exon 61509198 61509358 61509198 ID=Msa0462470-mRNA-1:exon:13025;Parent=Msa0462470-mRNA-1
chr3_3 exon 61509451 61509683 61509451 ID=Msa0462470-mRNA-1:exon:13026;Parent=Msa0462470-mRNA-1
chr3_3 exon 61509826 61509934 61509826 ID=Msa0462470-mRNA-1:exon:13027;Parent=Msa0462470-mRNA-1
chr3_3 exon 61510035 61510165 61510035 ID=Msa0462470-mRNA-1:exon:13028;Parent=Msa0462470-mRNA-1
chr3_3 exon 61511053 61511154 61511053 ID=Msa0462470-mRNA-1:exon:13029;Parent=Msa0462470-mRNA-1
chr3_3 exon 61511518 61511799 61511518 ID=Msa0462470-mRNA-1:exon:13030;Parent=Msa0462470-mRNA-1
chr3_3 exon 61511878 61511978 61511878 ID=Msa0462470-mRNA-1:exon:13031;Parent=Msa0462470-mRNA-1
chr3_3 exon 61512071 61512365 61512071 ID=Msa0462470-mRNA-1:exon:13032;Parent=Msa0462470-mRNA-1
chr3_3 exon 61512531 61512764 61512531 ID=Msa0462470-mRNA-1:exon:13033;Parent=Msa0462470-mRNA-1
chr3_3 exon 61512997 61513230 61512997 ID=Msa0462470-mRNA-1:exon:13034;Parent=Msa0462470-mRNA-1
chr3_3 exon 61513526 61513992 61513526 ID=Msa0462470-mRNA-1:exon:13035;Parent=Msa0462470-mRNA-1
chr3_3 exon 61514016 61514046 61514016 ID=Msa0462470-mRNA-1:exon:13036;Parent=Msa0462470-mRNA-1
chr3_3 five_prime_UTR 61507147 61507345 61507147 ID=Msa0462470-mRNA-1:five_prime_utr;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61507346 61508004 61507346 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61509198 61509358 61509198 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61509451 61509683 61509451 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61509826 61509934 61509826 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61510035 61510165 61510035 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61511053 61511154 61511053 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61511518 61511799 61511518 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61511878 61511978 61511878 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61512071 61512365 61512071 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61512531 61512764 61512531 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61512997 61513230 61512997 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 CDS 61513526 61513831 61513526 ID=Msa0462470-mRNA-1:cds;Parent=Msa0462470-mRNA-1
chr3_3 three_prime_UTR 61513832 61513992 61513832 ID=Msa0462470-mRNA-1:three_prime_utr;Parent=Msa0462470-mRNA-1
chr3_3 three_prime_UTR 61514016 61514046 61514016 ID=Msa0462470-mRNA-1:three_prime_utr;Parent=Msa0462470-mRNA-1
Gene Sequence

>Msa0462470

ATGCAAGTTTCTTCTTCATCACTTAACCCATGGTTCCCAACTCTCACTTCCAACCGCTTCCGCCGCATTCACTCACCGGAACCCTCTTCCACCACCGCAACCACCACAACCGCCACCGCATACTCACCACCTTCTCTCTCGTTTCTTTCATCTCAAAGAAACCGTTCTTCTTCTTCTTTCACCTCACTCACATCAACAAAAACAAAAAGAATAAGAAGAACGTCCACGTTCACGTTCACCGTAACTTCAATATTCGAACGATTCACAGAAAGATCAATAAAATCAATAGTCTACGCCGAAAAAGAAGCAAAATTCTTCAAGAGCGATTTCCTTTACGCACACCATATCATGCTTGGTCTCATAGCTGAAGCTGAAGAGACAAAACGTTCTCAAAACGGTTTTCTTGATTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACCAACTACGTTGATGATAATGGAGTGTATGTGTATGAAGATCGACCTGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTCTGAACCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATGAAAGTTGATGATGGAAGTTCTGCTAGAATTCTTTATAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGTGGCATATTCAAGACTACAAAAAGAGCTGGCTAGAGATGGTAGAGAGCCAGGTTATGTGTCCAATGGGGGACACAACAAATCTATATCACAAAGGCGTTCTGGTGCAGGATCTGCCGCTAAAACAAAAGATAAAAAGAGTGCTCTATCACAATTCTGCGTGGATCTCACTGCCCGTGCAAGTGTTGGGCTGATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCAAAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGCAGAGGGACTGGCAATTCTTATTTCTCGGGCAGAAGTTGCTCCTTTTCTATTGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACCGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCTTCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGTGTACGTGAGAAATATGAAGCACACCACAAGTGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGATTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTGCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAGTGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTGTATAGAAGTTAGGCCTGATCATATAGCAACAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGATCTGGATAATAAACTAAGGGAACGTGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGATCTGTGAAGAGATCTCGAGTCGGCCTTCGGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGCGTTGGGAAAACTGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGAAACGGACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACGGATTCTCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAACTCCATAGGTTTCTTCATTTCAGATGACAAACCAACATCATATAATGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGTTGCTCCAAATATTTGATTTGCTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAGAGCCATTGTAAACTTAATTGCAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTATCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACAGTCAACTTATCCGACACAAGTCACCCTTGA
Protein sequence

>Msa0462470

MQVSSSSLNPWFPTLTSNRFRRIHSPEPSSTTATTTTATAYSPPSLSFLSSQRNRSSSSFTSLTSTKTKRIRRTSTFTFTVTSIFERFTERSIKSIVYAEKEAKFFKSDFLYAHHIMLGLIAEAEETKRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYEDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALMKVDDGSSARILYRLGSNPDQLAAVAYSRLQKELARDGREPGYVSNGGHNKSISQRRSGAGSAAKTKDKKSALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGVREKYEAHHKCRYTEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTSELILDSYLTSAAFDNECIEVRPDHIATVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLRDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETDMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHNSIGFFISDDKPTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRRAIVNLIANPLAEALLAEKCKEGDTIFIDLDANGNTLVINQLDQTVNLSDTSHP*