Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415560 | G7JBN9 | 94.819 | 193 | 9 | 1 | 1 | 193 | 1 | 192 | 5.71e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa1415560 | 0.843672 | 1.213452e-58 | -8.615850e-47 |
| Msa0041780 | Msa1415560 | 0.823914 | 1.071561e-53 | -8.615850e-47 |
| Msa0117300 | Msa1415560 | 0.817355 | 3.442558e-52 | -8.615850e-47 |
| Msa1348240 | Msa1415560 | 0.815707 | 8.051744e-52 | -8.615850e-47 |
| Msa1368660 | Msa1415560 | 0.806178 | 9.330035e-50 | -8.615850e-47 |
| Msa1371360 | Msa1415560 | 0.971932 | 6.009349e-134 | -8.615850e-47 |
| Msa1395640 | Msa1415560 | 0.818201 | 2.217761e-52 | -8.615850e-47 |
| Msa1396090 | Msa1415560 | 0.897117 | 1.917473e-76 | -8.615850e-47 |
| Msa1410180 | Msa1415560 | 0.820498 | 6.643524e-53 | -8.615850e-47 |
| Msa1415560 | Msa1428440 | 0.811445 | 6.975972e-51 | -8.615850e-47 |
| Msa1415560 | Msa1428560 | 0.868800 | 4.988021e-66 | -8.615850e-47 |
| Msa1415560 | Msa1432250 | 0.812066 | 5.110074e-51 | -8.615850e-47 |
| Msa1415560 | Msa1433380 | 0.802566 | 5.278736e-49 | -8.615850e-47 |
| Msa1415560 | Msa1440180 | 0.804083 | 2.561404e-49 | -8.615850e-47 |
| Msa1415560 | Msa1440980 | 0.812531 | 4.045481e-51 | -8.615850e-47 |
| Msa1415560 | Msa1449740 | 0.804725 | 1.881997e-49 | -8.615850e-47 |
| Msa1415560 | Msa1450850 | 0.802906 | 4.490981e-49 | -8.615850e-47 |
| Msa1415560 | Msa1454850 | 0.810685 | 1.019507e-50 | -8.615850e-47 |
| Msa1415560 | Msa1457450 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa1415560 | Msa1459630 | 0.814183 | 1.753763e-51 | -8.615850e-47 |
| Msa0630850 | Msa1415560 | 0.820570 | 6.396143e-53 | -8.615850e-47 |
| Msa0639030 | Msa1415560 | 0.837423 | 5.243321e-57 | -8.615850e-47 |
| Msa0646390 | Msa1415560 | 0.804280 | 2.329826e-49 | -8.615850e-47 |
| Msa0648200 | Msa1415560 | 0.808119 | 3.622022e-50 | -8.615850e-47 |
| Msa0648300 | Msa1415560 | 0.801901 | 7.235078e-49 | -8.615850e-47 |
| Msa0656680 | Msa1415560 | 0.801820 | 7.518780e-49 | -8.615850e-47 |
| Msa0681880 | Msa1415560 | 0.820332 | 7.253295e-53 | -8.615850e-47 |
| Msa0697600 | Msa1415560 | 0.837149 | 6.162376e-57 | -8.615850e-47 |
| Msa0705050 | Msa1415560 | 0.803054 | 4.186812e-49 | -8.615850e-47 |
| Msa0756800 | Msa1415560 | -0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0796460 | Msa1415560 | 0.808242 | 3.409869e-50 | -8.615850e-47 |
| Msa0146600 | Msa1415560 | 0.805046 | 1.612511e-49 | -8.615850e-47 |
| Msa0184030 | Msa1415560 | 0.807580 | 4.715404e-50 | -8.615850e-47 |
| Msa0188500 | Msa1415560 | 0.807716 | 4.411960e-50 | -8.615850e-47 |
| Msa0200840 | Msa1415560 | 0.810298 | 1.235707e-50 | -8.615850e-47 |
| Msa0200870 | Msa1415560 | 0.822961 | 1.789884e-53 | -8.615850e-47 |
| Msa0216550 | Msa1415560 | 0.803253 | 3.807969e-49 | -8.615850e-47 |
| Msa0221940 | Msa1415560 | 0.815920 | 7.220925e-52 | -8.615850e-47 |
| Msa1230190 | Msa1415560 | 0.813832 | 2.096213e-51 | -8.615850e-47 |
| Msa1238370 | Msa1415560 | 0.800752 | 1.243788e-48 | -8.615850e-47 |
| Msa1252070 | Msa1415560 | 0.808495 | 3.011251e-50 | -8.615850e-47 |
| Msa1292730 | Msa1415560 | 0.809909 | 1.498825e-50 | -8.615850e-47 |
| Msa1306700 | Msa1415560 | 0.829315 | 5.515265e-55 | -8.615850e-47 |
| Msa0378670 | Msa1415560 | 0.836590 | 8.557330e-57 | -8.615850e-47 |
| Msa0378700 | Msa1415560 | 0.835252 | 1.870054e-56 | -8.615850e-47 |
| Msa0411000 | Msa1415560 | 0.821888 | 3.177079e-53 | -8.615850e-47 |
| Msa0421390 | Msa1415560 | 0.804486 | 2.111051e-49 | -8.615850e-47 |
| Msa0431940 | Msa1415560 | 0.807415 | 5.111252e-50 | -8.615850e-47 |
| Msa0448400 | Msa1415560 | 0.810400 | 1.174578e-50 | -8.615850e-47 |
| Msa0455230 | Msa1415560 | 0.809987 | 1.442030e-50 | -8.615850e-47 |
| Msa0462380 | Msa1415560 | 0.803609 | 3.212542e-49 | -8.615850e-47 |
| Msa0462420 | Msa1415560 | 0.808763 | 2.639887e-50 | -8.615850e-47 |
| Msa0467710 | Msa1415560 | 0.801206 | 1.004434e-48 | -8.615850e-47 |
| Msa1026720 | Msa1415560 | 0.806649 | 7.422788e-50 | -8.615850e-47 |
| Msa1031760 | Msa1415560 | 0.814705 | 1.344690e-51 | -8.615850e-47 |
| Msa1067710 | Msa1415560 | 0.817953 | 2.523560e-52 | -8.615850e-47 |
| Msa1070830 | Msa1415560 | 0.821269 | 4.416370e-53 | -8.615850e-47 |
| Msa1071310 | Msa1415560 | 0.823404 | 1.410691e-53 | -8.615850e-47 |
| Msa1102180 | Msa1415560 | 0.801279 | 9.703325e-49 | -8.615850e-47 |
| Msa0243470 | Msa1415560 | 0.821202 | 4.576468e-53 | -8.615850e-47 |
| Msa0243820 | Msa1415560 | 0.872904 | 2.220983e-67 | -8.615850e-47 |
| Msa0256410 | Msa1415560 | 0.814620 | 1.404048e-51 | -8.615850e-47 |
| Msa0281940 | Msa1415560 | 0.809444 | 1.886294e-50 | -8.615850e-47 |
| Msa0282500 | Msa1415560 | 0.873401 | 1.513531e-67 | -8.615850e-47 |
| Msa0295850 | Msa1415560 | 0.801426 | 9.055188e-49 | -8.615850e-47 |
| Msa0301300 | Msa1415560 | 0.805454 | 1.324478e-49 | -8.615850e-47 |
| Msa0363460 | Msa1415560 | 0.809567 | 1.775008e-50 | -8.615850e-47 |
| Msa1158650 | Msa1415560 | 0.816258 | 6.067818e-52 | -8.615850e-47 |
| Msa1166170 | Msa1415560 | 0.823968 | 1.040676e-53 | -8.615850e-47 |
| Msa1166270 | Msa1415560 | 0.825296 | 5.065463e-54 | -8.615850e-47 |
| Msa1182400 | Msa1415560 | 0.817080 | 3.968977e-52 | -8.615850e-47 |
| Msa1198450 | Msa1415560 | 0.823468 | 1.362748e-53 | -8.615850e-47 |
| Msa1208810 | Msa1415560 | 0.807560 | 4.762079e-50 | -8.615850e-47 |
| Msa1216700 | Msa1415560 | 0.801476 | 8.844800e-49 | -8.615850e-47 |
| Msa1216900 | Msa1415560 | 0.802923 | 4.456115e-49 | -8.615850e-47 |
| Msa0516310 | Msa1415560 | 0.814782 | 1.293009e-51 | -8.615850e-47 |
| Msa0546370 | Msa1415560 | 0.842787 | 2.088980e-58 | -8.615850e-47 |
| Msa0549740 | Msa1415560 | 0.800852 | 1.186478e-48 | -8.615850e-47 |
| Msa0554440 | Msa1415560 | 0.806338 | 8.634571e-50 | -8.615850e-47 |
| Msa0861480 | Msa1415560 | 0.821724 | 3.467858e-53 | -8.615850e-47 |
| Msa0861560 | Msa1415560 | 0.820624 | 6.215567e-53 | -8.615850e-47 |
| Msa0934830 | Msa1415560 | 0.800808 | 1.211322e-48 | -8.615850e-47 |
| Msa0975560 | Msa1415560 | 0.807500 | 4.904661e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415560 | MtrunA17_Chr3g0138241 | 94.819 | 193 | 9 | 1 | 1 | 193 | 1 | 192 | 1.10e-135 | 377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415560 | AT2G25605.1 | 73.134 | 201 | 45 | 2 | 1 | 193 | 1 | 200 | 1.20e-107 | 307 |
Find 59 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGTCAACCTATTT+TGG | 0.145914 | tig0024251:+1028 | Msa1415560:CDS |
| TCATTATGTGTAAATAAATT+AGG | 0.156875 | tig0024251:+2759 | Msa1415560:three_prime_UTR |
| TTCTACTTACCGAGTCTTAT+TGG | 0.178762 | tig0024251:+1544 | Msa1415560:CDS |
| GTGGTTGCTGGGATGGTTAT+TGG | 0.225394 | tig0024251:+2554 | Msa1415560:CDS |
| TGGCGACTCCTGCAACATTT+TGG | 0.246997 | tig0024251:-2831 | None:intergenic |
| ACAAATATAAGCAGCGGATT+TGG | 0.255858 | tig0024251:+1731 | Msa1415560:CDS |
| TAGCATATCACTTTATGTTT+TGG | 0.273380 | tig0024251:-2675 | None:intergenic |
| CATTATGTGTAAATAAATTA+GGG | 0.314300 | tig0024251:+2760 | Msa1415560:three_prime_UTR |
| ATCAAAGAATGGGCCAAAAT+AGG | 0.335461 | tig0024251:-1041 | None:intergenic |
| CAAATATAAGCAGCGGATTT+GGG | 0.340325 | tig0024251:+1732 | Msa1415560:CDS |
| TCTACTTACCGAGTCTTATT+GGG | 0.340415 | tig0024251:+1545 | Msa1415560:CDS |
| GTCTAAATTAAAATTGTCTA+TGG | 0.341533 | tig0024251:-500 | None:intergenic |
| ATTTCAATTTACAATGGTTC+AGG | 0.356398 | tig0024251:+1786 | Msa1415560:CDS |
| CGGGTTGGTGGTTGCTGGGA+TGG | 0.367466 | tig0024251:+2547 | Msa1415560:CDS |
| GACCAGCCTCGTCAAGACTA+TGG | 0.385917 | tig0024251:+891 | Msa1415560:CDS |
| AAATAAATTAGGGCTATAAT+TGG | 0.403674 | tig0024251:+2770 | Msa1415560:three_prime_UTR |
| GCAGCGGGTTGGTGGTTGCT+GGG | 0.409646 | tig0024251:+2543 | Msa1415560:intron |
| GATCATGAGCAGTTTATTTG+TGG | 0.421084 | tig0024251:+1583 | Msa1415560:CDS |
| CCCATTCTTTGATCTCGGTC+AGG | 0.431850 | tig0024251:+1051 | Msa1415560:CDS |
| CGAAGACATACGATGTCGTT+TGG | 0.437458 | tig0024251:+588 | Msa1415560:exon |
| ACAAAGTAGGGCGGAGAAGA+AGG | 0.443138 | tig0024251:-627 | None:intergenic |
| CCGACTTTCTCTCTTCTGAC+TGG | 0.451688 | tig0024251:+700 | Msa1415560:CDS |
| ACATCTAATCTTGGACCAAA+TGG | 0.454214 | tig0024251:-744 | None:intergenic |
| AATGTAATGTATGCAATTGA+AGG | 0.464515 | tig0024251:-2920 | None:intergenic |
| GCTTCCTTTGAATTTAGCTC+AGG | 0.470418 | tig0024251:-534 | None:intergenic |
| ATAGTGCTCACATCTAATCT+TGG | 0.471535 | tig0024251:-753 | None:intergenic |
| AAATAGGTTGACCTTTCAAA+AGG | 0.471757 | tig0024251:-1025 | None:intergenic |
| TTTGGCCCATTCTTTGATCT+CGG | 0.472760 | tig0024251:+1046 | Msa1415560:CDS |
| TGAAATATCTCCTCTTCCTC+TGG | 0.475702 | tig0024251:-1769 | None:intergenic |
| AGGAAGTCGACCAGAGGAAG+AGG | 0.484758 | tig0024251:+1759 | Msa1415560:CDS |
| AGAGTCTCTGCTTCATGACT+TGG | 0.485170 | tig0024251:+2582 | Msa1415560:CDS |
| CTCTTCTTATGCAGTTTGAA+AGG | 0.490282 | tig0024251:+1501 | Msa1415560:intron |
| CAGTCAGAAGAGAGAAAGTC+GGG | 0.495359 | tig0024251:-699 | None:intergenic |
| TGCAGAGACTTTGAAGGGAG+AGG | 0.500078 | tig0024251:-670 | None:intergenic |
| AACATTTGCAGAGACTTTGA+AGG | 0.504103 | tig0024251:-676 | None:intergenic |
| GAGCAGTTTATTTGTGGAGG+AGG | 0.507190 | tig0024251:+1589 | Msa1415560:CDS |
| TCCTTTGAATTTAGCTCAGG+AGG | 0.508303 | tig0024251:-531 | None:intergenic |
| TGTTATTGGCAGCGGGTTGG+TGG | 0.527157 | tig0024251:+2535 | Msa1415560:intron |
| TTCCATAGTCTTGACGAGGC+TGG | 0.528492 | tig0024251:-893 | None:intergenic |
| CATGAGCAGTTTATTTGTGG+AGG | 0.534205 | tig0024251:+1586 | Msa1415560:CDS |
| ATAAGACTCGGTAAGTAGAA+TGG | 0.541848 | tig0024251:-1541 | None:intergenic |
| AAGCAGCGGATTTGGGTTCG+AGG | 0.544388 | tig0024251:+1739 | Msa1415560:CDS |
| TCCTCCTGAGCTAAATTCAA+AGG | 0.544669 | tig0024251:+530 | Msa1415560:five_prime_UTR |
| CCGAGTCTTATTGGGTCACA+AGG | 0.548125 | tig0024251:+1553 | Msa1415560:CDS |
| CCTTGTGACCCAATAAGACT+CGG | 0.556779 | tig0024251:-1553 | None:intergenic |
| CCTGACCGAGATCAAAGAAT+GGG | 0.560157 | tig0024251:-1051 | None:intergenic |
| ACCTGACCGAGATCAAAGAA+TGG | 0.564894 | tig0024251:-1052 | None:intergenic |
| TGTTGTTATTGGCAGCGGGT+TGG | 0.567299 | tig0024251:+2532 | Msa1415560:intron |
| GTCAGTTTCATGAAGCTCCA+TGG | 0.579376 | tig0024251:+2652 | Msa1415560:three_prime_UTR |
| ATGCGCAGGACTGTTTACAT+TGG | 0.590226 | tig0024251:-2804 | None:intergenic |
| GGAGATATTTCAATTTACAA+TGG | 0.592072 | tig0024251:+1780 | Msa1415560:CDS |
| ACATTTGCAGAGACTTTGAA+GGG | 0.596568 | tig0024251:-675 | None:intergenic |
| CCAGTCAGAAGAGAGAAAGT+CGG | 0.600808 | tig0024251:-700 | None:intergenic |
| GAGTATAAGCGTGAAACACA+TGG | 0.624993 | tig0024251:-2851 | None:intergenic |
| AACAGAACAAATATAAGCAG+CGG | 0.625934 | tig0024251:+1725 | Msa1415560:intron |
| CTGTTTACATTGGATCAGCA+AGG | 0.644416 | tig0024251:-2794 | None:intergenic |
| GGTTCGAGGAAGTCGACCAG+AGG | 0.647129 | tig0024251:+1753 | Msa1415560:CDS |
| TCAATTCCATAGTCTTGACG+AGG | 0.689142 | tig0024251:-897 | None:intergenic |
| TTTCTGCAAACAAAGTAGGG+CGG | 0.692916 | tig0024251:-636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATTCTTTTTCATTTT+TGG | + | tig0024251:1675-1694 | Msa1415560:intron | 10.0% |
| !! | TTATGAATTATTAAAGAAAT+TGG | - | tig0024251:2077-2096 | None:intergenic | 10.0% |
| !! | TAGATATATAAACTATTTAT+TGG | - | tig0024251:2114-2133 | None:intergenic | 10.0% |
| !! | AATTAAACTAATAATCGAAA+AGG | - | tig0024251:787-806 | None:intergenic | 15.0% |
| !! | TGTTATATTATCATAATCAT+TGG | + | tig0024251:1875-1894 | Msa1415560:intron | 15.0% |
| !! | GTTATATTATCATAATCATT+GGG | + | tig0024251:1876-1895 | Msa1415560:intron | 15.0% |
| !! | TATATAAACTATTTATTGGA+TGG | - | tig0024251:2110-2129 | None:intergenic | 15.0% |
| !! | TTTATATATCTAAATCCTTT+GGG | + | tig0024251:2122-2141 | Msa1415560:intron | 15.0% |
| !!! | TCTTTTTCTAAAATTATCAT+CGG | - | tig0024251:2215-2234 | None:intergenic | 15.0% |
| !! | TCATTATGTGTAAATAAATT+AGG | + | tig0024251:2759-2778 | Msa1415560:three_prime_UTR | 15.0% |
| !! | CATTATGTGTAAATAAATTA+GGG | + | tig0024251:2760-2779 | Msa1415560:three_prime_UTR | 15.0% |
| !!! | GAATTTTTATTATAGTTTGC+TGG | + | tig0024251:995-1014 | Msa1415560:intron | 20.0% |
| !! | TAGTTTATAGCATATGTTTA+TGG | + | tig0024251:1460-1479 | Msa1415560:intron | 20.0% |
| !! | TTATTAAAGAAATTGGTAGA+AGG | - | tig0024251:2070-2089 | None:intergenic | 20.0% |
| !! | GTTTATATATCTAAATCCTT+TGG | + | tig0024251:2121-2140 | Msa1415560:intron | 20.0% |
| !! | TATCAATAATTCATAGGAAT+AGG | - | tig0024251:2148-2167 | None:intergenic | 20.0% |
| !!! | TGAAAGTATCAATAATTCAT+AGG | - | tig0024251:2154-2173 | None:intergenic | 20.0% |
| !!! | TTTTGCATGATTTTGAATTT+TGG | + | tig0024251:2360-2379 | Msa1415560:intron | 20.0% |
| !! | CGATAAATCAAAGAATAAAA+GGG | - | tig0024251:2497-2516 | None:intergenic | 20.0% |
| !! | TCGATAAATCAAAGAATAAA+AGG | - | tig0024251:2498-2517 | None:intergenic | 20.0% |
| !!! | ATGTACAAATTTTACAGATT+AGG | - | tig0024251:2719-2738 | None:intergenic | 20.0% |
| !! | AAATAAATTAGGGCTATAAT+TGG | + | tig0024251:2770-2789 | Msa1415560:three_prime_UTR | 20.0% |
| !!! | TAAATCTACCCATTTTTTTC+AGG | + | tig0024251:1189-1208 | Msa1415560:intron | 25.0% |
| !! | TAATGGATATCATGCATATT+TGG | - | tig0024251:1218-1237 | None:intergenic | 25.0% |
| ! | TGAACACAAAAAGTGATTAA+TGG | - | tig0024251:1235-1254 | None:intergenic | 25.0% |
| ! | GGTGATTAATTAATGTAACA+AGG | - | tig0024251:1338-1357 | None:intergenic | 25.0% |
| ! | AAATACGACAACAATTTGAA+TGG | - | tig0024251:1400-1419 | None:intergenic | 25.0% |
| ! | AAAAGAATATTAAGAACTCG+TGG | - | tig0024251:1668-1687 | None:intergenic | 25.0% |
| !!! | TTTCATTTTTGGCATTTTTC+TGG | + | tig0024251:1686-1705 | Msa1415560:intron | 25.0% |
| !!! | TTCATTTTTGGCATTTTTCT+GGG | + | tig0024251:1687-1706 | Msa1415560:intron | 25.0% |
| ! | GGAGATATTTCAATTTACAA+TGG | + | tig0024251:1780-1799 | Msa1415560:CDS | 25.0% |
| ! | ATTTCAATTTACAATGGTTC+AGG | + | tig0024251:1786-1805 | Msa1415560:CDS | 25.0% |
| ! | TTGATTGTCATTATAAGTGT+TGG | + | tig0024251:2240-2259 | Msa1415560:intron | 25.0% |
| ! | AACATAGAATTATGAACTGT+TGG | + | tig0024251:2458-2477 | Msa1415560:intron | 25.0% |
| !! | TAGCATATCACTTTATGTTT+TGG | - | tig0024251:2678-2697 | None:intergenic | 25.0% |
| ! | AATGTAATGTATGCAATTGA+AGG | - | tig0024251:2923-2942 | None:intergenic | 25.0% |
| ! | AAATAGGTTGACCTTTCAAA+AGG | - | tig0024251:1028-1047 | None:intergenic | 30.0% |
| ! | TTTGAAAGGTCAACCTATTT+TGG | + | tig0024251:1028-1047 | Msa1415560:CDS | 30.0% |
| TTTGGACACCTGAAAAAAAT+GGG | - | tig0024251:1200-1219 | None:intergenic | 30.0% | |
| ATTTGGACACCTGAAAAAAA+TGG | - | tig0024251:1201-1220 | None:intergenic | 30.0% | |
| AAGTATACACTTAAAAGTCG+TGG | + | tig0024251:1254-1273 | Msa1415560:intron | 30.0% | |
| TAACACACTTCTACATTGAT+TGG | + | tig0024251:1430-1449 | Msa1415560:intron | 30.0% | |
| !!! | TCATTTTTGGCATTTTTCTG+GGG | + | tig0024251:1688-1707 | Msa1415560:intron | 30.0% |
| AACAGAACAAATATAAGCAG+CGG | + | tig0024251:1725-1744 | Msa1415560:intron | 30.0% | |
| ! | TAGTTGATGTCTAACAAGAA+TGG | - | tig0024251:1829-1848 | None:intergenic | 30.0% |
| !!! | ATAATCAGCTCCTGATTTTT+TGG | + | tig0024251:1978-1997 | Msa1415560:intron | 30.0% |
| CGCTTTGTATAAATAACTCT+TGG | + | tig0024251:2018-2037 | Msa1415560:intron | 30.0% | |
| ! | AGACACACGTTTAATTTCAA+GGG | + | tig0024251:2295-2314 | Msa1415560:intron | 30.0% |
| !! | TATCCATCTCTTGTTGTTAT+TGG | + | tig0024251:2521-2540 | Msa1415560:intron | 30.0% |
| ! | CGTTTTCTGCAAACAAAGTA+GGG | - | tig0024251:642-661 | None:intergenic | 35.0% |
| ! | TCGTTTTCTGCAAACAAAGT+AGG | - | tig0024251:643-662 | None:intergenic | 35.0% |
| ACATTTGCAGAGACTTTGAA+GGG | - | tig0024251:678-697 | None:intergenic | 35.0% | |
| AACATTTGCAGAGACTTTGA+AGG | - | tig0024251:679-698 | None:intergenic | 35.0% | |
| TCTCGCAAGAAAAAACCATT+TGG | + | tig0024251:729-748 | Msa1415560:CDS | 35.0% | |
| ACATCTAATCTTGGACCAAA+TGG | - | tig0024251:747-766 | None:intergenic | 35.0% | |
| ATAGTGCTCACATCTAATCT+TGG | - | tig0024251:756-775 | None:intergenic | 35.0% | |
| GATTAGATGTGAGCACTATT+TGG | + | tig0024251:757-776 | Msa1415560:intron | 35.0% | |
| ATTGAAGTCATGTACAGAGT+AGG | + | tig0024251:915-934 | Msa1415560:intron | 35.0% | |
| ! | CTGGATTTGATCCTTTTGAA+AGG | + | tig0024251:1014-1033 | Msa1415560:CDS | 35.0% |
| ATCAAAGAATGGGCCAAAAT+AGG | - | tig0024251:1044-1063 | None:intergenic | 35.0% | |
| !!! | GATATTTTGATCTCAGTCCA+AGG | + | tig0024251:1108-1127 | Msa1415560:intron | 35.0% |
| TCATGATTAATTACGCTCAG+AGG | - | tig0024251:1154-1173 | None:intergenic | 35.0% | |
| GTAAATGACGTTAAAAACCG+TGG | + | tig0024251:1276-1295 | Msa1415560:intron | 35.0% | |
| TTCATGAAACACAGTAACCA+CGG | - | tig0024251:1296-1315 | None:intergenic | 35.0% | |
| CTCTTCTTATGCAGTTTGAA+AGG | + | tig0024251:1501-1520 | Msa1415560:intron | 35.0% | |
| ! | ATAAGACTCGGTAAGTAGAA+TGG | - | tig0024251:1544-1563 | None:intergenic | 35.0% |
| ! | TTCTACTTACCGAGTCTTAT+TGG | + | tig0024251:1544-1563 | Msa1415560:CDS | 35.0% |
| !! | TCTACTTACCGAGTCTTATT+GGG | + | tig0024251:1545-1564 | Msa1415560:CDS | 35.0% |
| GATCATGAGCAGTTTATTTG+TGG | + | tig0024251:1583-1602 | Msa1415560:CDS | 35.0% | |
| TGTGGAGGAGGTAAATAAAA+TGG | + | tig0024251:1601-1620 | Msa1415560:intron | 35.0% | |
| ! | ACAAATATAAGCAGCGGATT+TGG | + | tig0024251:1731-1750 | Msa1415560:CDS | 35.0% |
| ! | CAAATATAAGCAGCGGATTT+GGG | + | tig0024251:1732-1751 | Msa1415560:CDS | 35.0% |
| ACTATCGCTACCAAAAAATC+AGG | - | tig0024251:1991-2010 | None:intergenic | 35.0% | |
| ! | CAGACACACGTTTAATTTCA+AGG | + | tig0024251:2294-2313 | Msa1415560:intron | 35.0% |
| AGTTGTGATCTTACCACATT+GGG | + | tig0024251:2392-2411 | Msa1415560:intron | 35.0% | |
| !! | CATGACTTGGATACATTTTC+TGG | + | tig0024251:2595-2614 | Msa1415560:CDS | 35.0% |
| !!! | ATCACTTTATGTTTTGGCCA+TGG | - | tig0024251:2672-2691 | None:intergenic | 35.0% |
| !! | AACATTTTGGTAAAATGCGC+AGG | - | tig0024251:2821-2840 | None:intergenic | 35.0% |
| ! | GCATTTTACCAAAATGTTGC+AGG | + | tig0024251:2823-2842 | Msa1415560:three_prime_UTR | 35.0% |
| ! | CATTTTCTTTGCACTACTCA+TGG | + | tig0024251:2939-2958 | Msa1415560:three_prime_UTR | 35.0% |
| TCCTCCTGAGCTAAATTCAA+AGG | + | tig0024251:530-549 | Msa1415560:five_prime_UTR | 40.0% | |
| ! | TCCTTTGAATTTAGCTCAGG+AGG | - | tig0024251:534-553 | None:intergenic | 40.0% |
| ! | GCTTCCTTTGAATTTAGCTC+AGG | - | tig0024251:537-556 | None:intergenic | 40.0% |
| TTTCTGCAAACAAAGTAGGG+CGG | - | tig0024251:639-658 | None:intergenic | 40.0% | |
| ! | TCAATTCCATAGTCTTGACG+AGG | - | tig0024251:900-919 | None:intergenic | 40.0% |
| TTTGGCCCATTCTTTGATCT+CGG | + | tig0024251:1046-1065 | Msa1415560:CDS | 40.0% | |
| GATTAATTACGCTCAGAGGA+TGG | - | tig0024251:1150-1169 | None:intergenic | 40.0% | |
| ATTTGTCAATCACGTTCAGC+AGG | - | tig0024251:1359-1378 | None:intergenic | 40.0% | |
| CATGAGCAGTTTATTTGTGG+AGG | + | tig0024251:1586-1605 | Msa1415560:CDS | 40.0% | |
| TGAAATATCTCCTCTTCCTC+TGG | - | tig0024251:1772-1791 | None:intergenic | 40.0% | |
| ATTCATAGGAATAGGCCCAA+AGG | - | tig0024251:2140-2159 | None:intergenic | 40.0% | |
| AACGTGTGTCTGATATGTGT+TGG | - | tig0024251:2286-2305 | None:intergenic | 40.0% | |
| ! | ACACGTTTAATTTCAAGGGC+CGG | + | tig0024251:2299-2318 | Msa1415560:intron | 40.0% |
| AGTATAGACCTGTGTAACAC+CGG | - | tig0024251:2321-2340 | None:intergenic | 40.0% | |
| GAGTTGTGATCTTACCACAT+TGG | + | tig0024251:2391-2410 | Msa1415560:intron | 40.0% | |
| AATCATCTAGCTACCCAATG+TGG | - | tig0024251:2408-2427 | None:intergenic | 40.0% | |
| CTGCCAATAACAACAAGAGA+TGG | - | tig0024251:2527-2546 | None:intergenic | 40.0% | |
| !! | TCTCTTGTTGTTATTGGCAG+CGG | + | tig0024251:2527-2546 | Msa1415560:intron | 40.0% |
| ! | GACTTGGATACATTTTCTGG+TGG | + | tig0024251:2598-2617 | Msa1415560:CDS | 40.0% |
| CTGTTTACATTGGATCAGCA+AGG | - | tig0024251:2797-2816 | None:intergenic | 40.0% | |
| GAGTATAAGCGTGAAACACA+TGG | - | tig0024251:2854-2873 | None:intergenic | 40.0% | |
| CGAAGACATACGATGTCGTT+TGG | + | tig0024251:588-607 | Msa1415560:exon | 45.0% | |
| CAGTCAGAAGAGAGAAAGTC+GGG | - | tig0024251:702-721 | None:intergenic | 45.0% | |
| CCAGTCAGAAGAGAGAAAGT+CGG | - | tig0024251:703-722 | None:intergenic | 45.0% | |
| CCTGACCGAGATCAAAGAAT+GGG | - | tig0024251:1054-1073 | None:intergenic | 45.0% | |
| ACCTGACCGAGATCAAAGAA+TGG | - | tig0024251:1055-1074 | None:intergenic | 45.0% | |
| CCTTGTGACCCAATAAGACT+CGG | - | tig0024251:1556-1575 | None:intergenic | 45.0% | |
| GAGCAGTTTATTTGTGGAGG+AGG | + | tig0024251:1589-1608 | Msa1415560:CDS | 45.0% | |
| ! | ACTCGTGGCAGTGACTTTTT+GGG | - | tig0024251:1653-1672 | None:intergenic | 45.0% |
| ! | AACTCGTGGCAGTGACTTTT+TGG | - | tig0024251:1654-1673 | None:intergenic | 45.0% |
| !! | CTCTTGTTGTTATTGGCAGC+GGG | + | tig0024251:2528-2547 | Msa1415560:intron | 45.0% |
| AGAGTCTCTGCTTCATGACT+TGG | + | tig0024251:2582-2601 | Msa1415560:CDS | 45.0% | |
| GTCAGTTTCATGAAGCTCCA+TGG | + | tig0024251:2652-2671 | Msa1415560:three_prime_UTR | 45.0% | |
| ATGCGCAGGACTGTTTACAT+TGG | - | tig0024251:2807-2826 | None:intergenic | 45.0% | |
| !!! | ATTATTAGTTTAATTTAATT+CGG | + | tig0024251:792-811 | Msa1415560:intron | 5.0% |
| ACAAAGTAGGGCGGAGAAGA+AGG | - | tig0024251:630-649 | None:intergenic | 50.0% | |
| ! | TGCAGAGACTTTGAAGGGAG+AGG | - | tig0024251:673-692 | None:intergenic | 50.0% |
| CCGACTTTCTCTCTTCTGAC+TGG | + | tig0024251:700-719 | Msa1415560:CDS | 50.0% | |
| ! | TTCCATAGTCTTGACGAGGC+TGG | - | tig0024251:896-915 | None:intergenic | 50.0% |
| CCCATTCTTTGATCTCGGTC+AGG | + | tig0024251:1051-1070 | Msa1415560:CDS | 50.0% | |
| GTTACTGAGTTGCGACACCT+TGG | - | tig0024251:1128-1147 | None:intergenic | 50.0% | |
| !! | CCGAGTCTTATTGGGTCACA+AGG | + | tig0024251:1553-1572 | Msa1415560:CDS | 50.0% |
| ! | TGTTGTTATTGGCAGCGGGT+TGG | + | tig0024251:2532-2551 | Msa1415560:intron | 50.0% |
| GTGGTTGCTGGGATGGTTAT+TGG | + | tig0024251:2554-2573 | Msa1415560:CDS | 50.0% | |
| ! | TGGCGACTCCTGCAACATTT+TGG | - | tig0024251:2834-2853 | None:intergenic | 50.0% |
| GACCAGCCTCGTCAAGACTA+TGG | + | tig0024251:891-910 | Msa1415560:CDS | 55.0% | |
| ! | AAGCAGCGGATTTGGGTTCG+AGG | + | tig0024251:1739-1758 | Msa1415560:CDS | 55.0% |
| AGGAAGTCGACCAGAGGAAG+AGG | + | tig0024251:1759-1778 | Msa1415560:CDS | 55.0% | |
| !! | TTCAAGGGCCGGTGTTACAC+AGG | + | tig0024251:2310-2329 | Msa1415560:intron | 55.0% |
| !! | TGTTATTGGCAGCGGGTTGG+TGG | + | tig0024251:2535-2554 | Msa1415560:intron | 55.0% |
| GGTTCGAGGAAGTCGACCAG+AGG | + | tig0024251:1753-1772 | Msa1415560:CDS | 60.0% | |
| !! | GCAGCGGGTTGGTGGTTGCT+GGG | + | tig0024251:2543-2562 | Msa1415560:intron | 65.0% |
| !! | CGGGTTGGTGGTTGCTGGGA+TGG | + | tig0024251:2547-2566 | Msa1415560:CDS | 65.0% |
| !! | GGCAGCGGGTTGGTGGTTGC+TGG | + | tig0024251:2542-2561 | Msa1415560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024251 | gene | 501 | 2984 | 501 | ID=Msa1415560;Name=Msa1415560 |
| tig0024251 | mRNA | 501 | 2984 | 501 | ID=Msa1415560-mRNA-1;Parent=Msa1415560;Name=Msa1415560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|6|351|193 |
| tig0024251 | exon | 501 | 764 | 501 | ID=Msa1415560-mRNA-1:exon:22480;Parent=Msa1415560-mRNA-1 |
| tig0024251 | exon | 840 | 932 | 840 | ID=Msa1415560-mRNA-1:exon:22481;Parent=Msa1415560-mRNA-1 |
| tig0024251 | exon | 1010 | 1072 | 1010 | ID=Msa1415560-mRNA-1:exon:22482;Parent=Msa1415560-mRNA-1 |
| tig0024251 | exon | 1515 | 1610 | 1515 | ID=Msa1415560-mRNA-1:exon:22483;Parent=Msa1415560-mRNA-1 |
| tig0024251 | exon | 1730 | 1807 | 1730 | ID=Msa1415560-mRNA-1:exon:22484;Parent=Msa1415560-mRNA-1 |
| tig0024251 | exon | 2547 | 2984 | 2547 | ID=Msa1415560-mRNA-1:exon:22485;Parent=Msa1415560-mRNA-1 |
| tig0024251 | five_prime_UTR | 501 | 599 | 501 | ID=Msa1415560-mRNA-1:five_prime_utr;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 600 | 764 | 600 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 840 | 932 | 840 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 1010 | 1072 | 1010 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 1515 | 1610 | 1515 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 1730 | 1807 | 1730 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | CDS | 2547 | 2633 | 2547 | ID=Msa1415560-mRNA-1:cds;Parent=Msa1415560-mRNA-1 |
| tig0024251 | three_prime_UTR | 2634 | 2984 | 2634 | ID=Msa1415560-mRNA-1:three_prime_utr;Parent=Msa1415560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
