AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462380 MtrunA17_Chr3g0131351 95.812 955 22 4 1 942 9 958 0.0 1867
Msa0462380 MtrunA17_Chr3g0131711 47.241 870 411 15 75 937 79 907 0.0 754
Msa0462380 MtrunA17_Chr3g0134631 46.303 879 424 14 66 937 75 912 0.0 742
Msa0462380 MtrunA17_Chr8g0385811 45.643 918 440 17 34 937 39 911 0.0 742
Msa0462380 MtrunA17_Chr7g0218421 37.942 962 465 19 48 941 54 951 0.0 608
Msa0462380 MtrunA17_Chr6g0454071 38.816 912 441 16 89 932 82 944 0.0 602
Msa0462380 MtrunA17_Chr3g0137071 43.497 715 328 11 278 928 247 949 0.0 574
Msa0462380 MtrunA17_Chr4g0061371 43.593 718 323 13 280 934 162 860 0.0 563
Msa0462380 MtrunA17_Chr7g0225161 42.120 736 340 15 266 935 145 860 2.50e-173 528
Msa0462380 MtrunA17_Chr3g0102771 48.094 341 166 5 600 938 454 785 1.03e-103 342
Msa0462380 MtrunA17_Chr3g0102771 32.653 490 280 7 87 553 1 463 2.15e-67 242
Msa0462380 MtrunA17_Chr3g0135231 34.098 654 341 22 2 635 3 586 2.90e-84 285
Msa0462380 MtrunA17_Chr3g0135231 52.688 93 34 2 764 856 568 650 7.39e-20 95.1
Msa0462380 MtrunA17_Chr2g0329561 39.566 369 204 4 568 935 106 456 2.55e-80 269
Msa0462380 MtrunA17_Chr2g0277781 42.712 295 152 4 608 900 2 281 8.36e-73 242
Msa0462380 MtrunA17_Chr1g0188061 46.429 140 64 2 685 824 221 349 6.06e-29 119
Msa0462380 MtrunA17_Chr7g0260931 52.809 89 42 0 600 688 6 94 1.86e-24 98.6
Msa0462380 MtrunA17_Chr2g0277771 36.184 152 81 3 785 935 1 137 3.14e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462380 AT5G51070.1 63.870 894 307 9 65 949 56 942 0.0 1139
Msa0462380 AT5G50920.1 46.469 878 391 14 82 937 89 909 0.0 751
Msa0462380 AT3G48870.2 46.458 861 409 14 86 937 82 899 0.0 738
Msa0462380 AT3G48870.1 46.458 861 409 14 86 937 113 930 0.0 736
Msa0462380 AT3G48870.4 46.458 861 409 14 86 937 113 930 0.0 736
Msa0462380 AT3G48870.3 46.458 861 409 14 86 937 113 930 0.0 736
Msa0462380 AT5G15450.1 38.942 945 443 19 61 926 42 931 0.0 610
Msa0462380 AT2G25140.1 36.708 978 481 20 39 940 39 954 0.0 583
Msa0462380 AT1G74310.1 42.958 710 326 13 280 929 162 852 0.0 555
Msa0462380 AT1G74310.2 43.368 671 301 13 280 890 162 813 8.91e-174 526
Msa0462380 AT4G14670.1 40.711 506 228 9 281 725 128 622 6.36e-107 345
Msa0462380 AT3G45450.1 30.061 326 179 10 177 474 5 309 1.14e-31 127

Find 232 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGAACTGCAGCCTTTA+TGG 0.098364 3_3:-61389508 None:intergenic
TCTTTGGCTGCATGCTATTT+TGG 0.134909 3_3:+61390253 Msa0462380:CDS
TAACATTCTTCTTCAATTAA+TGG 0.179501 3_3:+61390630 Msa0462380:CDS
GCAGCAGCAAATCAAATATT+TGG 0.183562 3_3:-61391445 None:intergenic
TCAAACAAAACCACAGTAAA+TGG 0.209228 3_3:-61390577 None:intergenic
TTAACTATGGTAAGTGATTA+TGG 0.209696 3_3:-61385212 None:intergenic
AACTAACAAGTTAGACATTT+TGG 0.211920 3_3:+61385059 Msa0462380:five_prime_UTR
ACTTGGAAGGGGTCAGTTTC+AGG 0.235139 3_3:+61388058 Msa0462380:CDS
CTAAAAGCCCGGATGATTAT+TGG 0.258261 3_3:+61389655 Msa0462380:CDS
TGACACTATCTTCATTGATT+TGG 0.258424 3_3:+61391649 Msa0462380:CDS
GACAACCGGGAGGGGAAATA+AGG 0.261671 3_3:+61387998 Msa0462380:CDS
GTTCAGGATCAACAAAATTA+TGG 0.267481 3_3:-61385838 None:intergenic
GTTCTGCTAGAATTCTTTAT+AGG 0.277808 3_3:+61385897 Msa0462380:CDS
CATTCAGTGAGCAAGTTATT+AGG 0.278138 3_3:+61390490 Msa0462380:CDS
TCTATCCTGTTGAGCAGTTC+TGG 0.284706 3_3:-61391085 None:intergenic
TGTTCAGTCCACGCTTAAAA+TGG 0.298769 3_3:+61389692 Msa0462380:CDS
GGAAGGAAGAAAGAAGAAAA+AGG 0.315182 3_3:-61385137 None:intergenic
AGAAGAATGTTAAATATATC+TGG 0.315702 3_3:-61390619 None:intergenic
CCAGCTTCACCCAGAAGAAT+TGG 0.326428 3_3:-61387502 None:intergenic
ACTAACTACGTTGATGATAA+TGG 0.326862 3_3:+61385725 Msa0462380:CDS
TCAACTTCTCGGCCAATAAC+TGG 0.328094 3_3:-61387433 None:intergenic
GGGCTGATTGATCCAGTTAT+TGG 0.329565 3_3:+61387421 Msa0462380:CDS
TTCTTTGAACTTCAACTTCT+CGG 0.329689 3_3:-61387444 None:intergenic
GTTAGACATGAGTGAATATA+TGG 0.330047 3_3:+61390462 Msa0462380:CDS
GCCACAGCTGCCAACTGATC+TGG 0.335594 3_3:-61387125 None:intergenic
CTGTAAAGTCAAAGATGTTT+TGG 0.335668 3_3:+61391799 Msa0462380:three_prime_UTR
CACGGCGGTTTCAACCTGTT+TGG 0.339833 3_3:+61389028 Msa0462380:CDS
CTTGGATGTAGGACTATTAA+TGG 0.344112 3_3:+61387757 Msa0462380:CDS
TGATGCAATTAAGATACTTA+TGG 0.355715 3_3:+61389434 Msa0462380:CDS
GAGATCTCGAGTCGGCCTTC+GGG 0.356437 3_3:+61390159 Msa0462380:CDS
CTTAAATATTATGGTGCATC+TGG 0.366184 3_3:+61389807 Msa0462380:CDS
TCAGCAGTGAGCTGCTGAAC+TGG 0.366254 3_3:-61390043 None:intergenic
GACTGGCAATTCTTATTTCT+CGG 0.376702 3_3:+61387551 Msa0462380:CDS
GAGAGCATGCTTAAATATTA+TGG 0.380084 3_3:+61389798 Msa0462380:CDS
TCTATATCACAAAGGCGTTC+TGG 0.385165 3_3:+61387224 Msa0462380:CDS
GACAAACCAACATCATATAA+TGG 0.386817 3_3:+61391019 Msa0462380:CDS
CTCACTGCCCGTGCAAGTGT+TGG 0.393374 3_3:+61387400 Msa0462380:CDS
TTCGTCCAGAACTGCTCAAC+AGG 0.394949 3_3:+61391080 Msa0462380:CDS
ATGAGGTCAATAGCTTTATC+AGG 0.395259 3_3:-61389561 None:intergenic
TTGAGAGTGAAAATTAACTA+TGG 0.395355 3_3:-61385225 None:intergenic
GGTGGTTGCGGTGGTGGAAG+AGG 0.395523 3_3:-61385333 None:intergenic
TTACTATTCTGTGGCCCAAC+TGG 0.398909 3_3:+61390205 Msa0462380:CDS
TTCAGGAAACGGACATGATA+AGG 0.400120 3_3:+61390440 Msa0462380:intron
CAAACACTAAGCTAACAAAT+AGG 0.400507 3_3:-61391824 None:intergenic
GGTTGTGGTGGTTGCGGTGG+TGG 0.402290 3_3:-61385339 None:intergenic
CCAATTCTTCTGGGTGAAGC+TGG 0.408826 3_3:+61387502 Msa0462380:CDS
CTATGAGACCAAGCATGATA+TGG 0.410636 3_3:-61385601 None:intergenic
CTTCTTCAATTAATGGAAGA+TGG 0.413133 3_3:+61390637 Msa0462380:CDS
CTTGTTCAATCAGGGACAAC+CGG 0.414239 3_3:+61387984 Msa0462380:CDS
GTTCACACACTTGTTCAATC+AGG 0.415130 3_3:+61387975 Msa0462380:CDS
GCGGTGGTGGAAGAGGGTTC+CGG 0.418091 3_3:-61385326 None:intergenic
AAACTAAGGGAACGTGTGAT+TGG 0.431441 3_3:+61390097 Msa0462380:CDS
AACTGAACTAGCAAAGTCTT+TGG 0.432809 3_3:+61390237 Msa0462380:CDS
TGGCCATCTTACGGATTCTC+AGG 0.433088 3_3:+61390657 Msa0462380:CDS
ATTTCTCTCCAATAATCATC+CGG 0.433200 3_3:-61389663 None:intergenic
AGAGATCTCGAGTCGGCCTT+CGG 0.433232 3_3:+61390158 Msa0462380:CDS
TTCTGGGTGAAGCTGGAGTT+GGG 0.435845 3_3:+61387509 Msa0462380:CDS
AGGAAGGAATAGAGTGAGAA+TGG 0.436220 3_3:-61385105 None:intergenic
GATGCAATTAAGATACTTAT+GGG 0.437666 3_3:+61389435 Msa0462380:CDS
CTTCTGGGTGAAGCTGGAGT+TGG 0.438875 3_3:+61387508 Msa0462380:CDS
CAGCAAGATACATAGTTGAT+AGG 0.439208 3_3:+61389532 Msa0462380:CDS
AGTCAAGGACCTTGTCTGTA+AGG 0.440929 3_3:+61391520 Msa0462380:CDS
CTAACTTGTTAGTTATTGCT+TGG 0.444081 3_3:-61385050 None:intergenic
AACAGCTATTGCAGAGGGAC+TGG 0.445401 3_3:+61387534 Msa0462380:CDS
CTCGGCTCATCAATCCAAAC+AGG 0.446079 3_3:-61389042 None:intergenic
TCACAAAGGCGTTCTGGTGC+AGG 0.451507 3_3:+61387230 Msa0462380:CDS
TGCTGCTGCAAGACGTGAAA+AGG 0.453555 3_3:+61391459 Msa0462380:CDS
TCACTGCCCGTGCAAGTGTT+GGG 0.455417 3_3:+61387401 Msa0462380:CDS
AAGAAGTCTTCTGTTAGATC+TGG 0.455467 3_3:+61390069 Msa0462380:CDS
AGCCAGGTTATGTGTCCAAT+GGG 0.456669 3_3:+61387189 Msa0462380:CDS
TTCTGTGGCCCAACTGGCGT+TGG 0.456768 3_3:+61390211 Msa0462380:CDS
GCAAGCAATGCTTCAGCCAA+TGG 0.458378 3_3:-61391608 None:intergenic
GTGAGTGAATGCGGCGGAAG+CGG 0.460759 3_3:-61385304 None:intergenic
GGGGTCTAGTGCCATTGCTA+AGG 0.463476 3_3:+61390961 Msa0462380:CDS
AAAAGCAATCCAATTCTTCT+GGG 0.464852 3_3:+61387493 Msa0462380:CDS
ACAGAATAGTAAAGTTGCTA+TGG 0.465089 3_3:-61390194 None:intergenic
ACAGTTGCTTCCCTCTGGTC+AGG 0.465119 3_3:+61390016 Msa0462380:CDS
AATGGAAGATGGCCATCTTA+CGG 0.465250 3_3:+61390648 Msa0462380:CDS
CACCTCAAAATCAATTCCTC+GGG 0.465538 3_3:-61391489 None:intergenic
TGAGTATGCGGTGGCGGTTG+TGG 0.466946 3_3:-61385354 None:intergenic
TTCAATCCATTATATGATGT+TGG 0.467114 3_3:-61391025 None:intergenic
ATAAAAGATATAATAGAGTC+AGG 0.467220 3_3:+61387827 Msa0462380:CDS
GCTAGAGATGGTAGAGAGCC+AGG 0.468940 3_3:+61387173 Msa0462380:CDS
TAGATCTGGATAATAAACTA+AGG 0.469027 3_3:+61390083 Msa0462380:CDS
GTGGTTGCGGTGGTGGAAGA+GGG 0.470187 3_3:-61385332 None:intergenic
CTTCTTCATCACTTAACCCA+TGG 0.471963 3_3:+61385261 Msa0462380:CDS
GACAAAACGTGTCATGTCCT+TGG 0.472119 3_3:+61387739 Msa0462380:intron
GATGTAGGACTATTAATGGC+TGG 0.472478 3_3:+61387761 Msa0462380:CDS
TAAAGTTGCTATGGGTCTAC+CGG 0.474304 3_3:-61390185 None:intergenic
CCCAGATCAGTTGGCAGCTG+TGG 0.474446 3_3:+61387124 Msa0462380:CDS
TGCTTAAACCTTCACTTGGA+AGG 0.478401 3_3:+61388045 Msa0462380:CDS
CAATCAGGGACAACCGGGAG+GGG 0.479272 3_3:+61387990 Msa0462380:CDS
CTAATAACTTGCTCACTGAA+TGG 0.479808 3_3:-61390489 None:intergenic
GGGAGGGGAAATAAGGGTTC+TGG 0.480130 3_3:+61388005 Msa0462380:CDS
CTACCACTATTGATGAATAC+AGG 0.481152 3_3:+61388977 Msa0462380:CDS
GCAACTGTTGCTATATGATC+AGG 0.483203 3_3:-61390001 None:intergenic
ACAACCGGGAGGGGAAATAA+GGG 0.483340 3_3:+61387999 Msa0462380:CDS
GTTATGTTGGTTATGGAGAA+GGG 0.484795 3_3:+61390524 Msa0462380:CDS
TCTGTGGCCCAACTGGCGTT+GGG 0.486174 3_3:+61390212 Msa0462380:CDS
ACTGGCAATTCTTATTTCTC+GGG 0.487942 3_3:+61387552 Msa0462380:CDS
CAAGCAATGCTTCAGCCAAT+GGG 0.488172 3_3:-61391607 None:intergenic
GAGACAAAACGTTCTCAAAA+CGG 0.488248 3_3:+61385635 Msa0462380:CDS
TCGTTCGAATATTGAAGTTA+CGG 0.489169 3_3:-61385498 None:intergenic
TCTCTTCACAGATCTAGAAA+TGG 0.490279 3_3:-61390140 None:intergenic
AGCGGTTGGAAGTGAGAGTT+GGG 0.490437 3_3:-61385286 None:intergenic
GTACAATGGTTCATTACTCA+AGG 0.490996 3_3:-61391740 None:intergenic
AGAACCCTTATTTCCCCTCC+CGG 0.496013 3_3:-61388003 None:intergenic
GATAGACACACCAATAGAAA+AGG 0.496212 3_3:-61387586 None:intergenic
TATAACAAGGGTGTTACCAT+TGG 0.496267 3_3:-61391675 None:intergenic
GCTTAAACCTTCACTTGGAA+GGG 0.497310 3_3:+61388046 Msa0462380:CDS
ATATACAGAAGATGCCATAA+AGG 0.500415 3_3:+61389494 Msa0462380:CDS
GGTGGCGGTTGTGGTGGTTG+CGG 0.500601 3_3:-61385345 None:intergenic
TCTCCATAACCAACATAACC+TGG 0.501731 3_3:-61390520 None:intergenic
GAGGTCTAGCACCATATGTT+GGG 0.502338 3_3:-61391553 None:intergenic
GGATCTGCCGCTAAAACAAA+AGG 0.502472 3_3:+61387251 Msa0462380:CDS
CCACAGCTGCCAACTGATCT+GGG 0.502623 3_3:-61387124 None:intergenic
TAGCAACAGTTGCTTCCCTC+TGG 0.507727 3_3:+61390011 Msa0462380:CDS
GTACCAAAAGAAAACGGAAC+AGG 0.507840 3_3:-61385770 None:intergenic
ATGTAGGACTATTAATGGCT+GGG 0.511098 3_3:+61387762 Msa0462380:CDS
AAGCGGTTGGAAGTGAGAGT+TGG 0.513262 3_3:-61385287 None:intergenic
AAACTTAATTGCAAACCCAT+TGG 0.514028 3_3:+61391592 Msa0462380:CDS
GAAGGCTATGACCCAACATA+TGG 0.515298 3_3:+61391542 Msa0462380:CDS
TACGCACACCATATCATGCT+TGG 0.519026 3_3:+61385593 Msa0462380:CDS
GAAAGAAACGAGAGAGAAGG+TGG 0.519655 3_3:-61385377 None:intergenic
AAGCCTGTATTCATCAATAG+TGG 0.519791 3_3:-61388980 None:intergenic
CGAGTCGGCCTTCGGGATCC+CGG 0.521425 3_3:+61390166 Msa0462380:CDS
TTCATTGATTTGGATGCCAA+TGG 0.522612 3_3:+61391659 Msa0462380:CDS
CTTCCGCCGCATTCACTCAC+CGG 0.523861 3_3:+61385307 Msa0462380:CDS
ATCTGAAATGAAGAAACCTA+TGG 0.528568 3_3:-61390996 None:intergenic
CATATGGTGCTAGACCTCTC+AGG 0.531368 3_3:+61391558 Msa0462380:CDS
ACACCTCAAAATCAATTCCT+CGG 0.532915 3_3:-61391490 None:intergenic
TCATCCCCTTGAAAAGCCAC+AGG 0.534299 3_3:+61391123 Msa0462380:CDS
GCATGATATGGTGTGCGTAA+AGG 0.534330 3_3:-61385589 None:intergenic
TACTTCCTGCTTCATCAATG+AGG 0.539893 3_3:-61389578 None:intergenic
GTGAATGCGGCGGAAGCGGT+TGG 0.540013 3_3:-61385300 None:intergenic
AGAGGTCTAGCACCATATGT+TGG 0.540703 3_3:-61391554 None:intergenic
GGCGGTTGTGGTGGTTGCGG+TGG 0.541218 3_3:-61385342 None:intergenic
GGTTATGTTGGTTATGGAGA+AGG 0.541808 3_3:+61390523 Msa0462380:CDS
GGGTCTAGTGCCATTGCTAA+GGG 0.542537 3_3:+61390962 Msa0462380:CDS
AGGTGGTGAGTATGCGGTGG+CGG 0.542666 3_3:-61385360 None:intergenic
CTTAAACCTTCACTTGGAAG+GGG 0.543263 3_3:+61388047 Msa0462380:CDS
ATTGACCTCATTGATGAAGC+AGG 0.544458 3_3:+61389573 Msa0462380:CDS
CAATCAGCCCAACACTTGCA+CGG 0.544552 3_3:-61387408 None:intergenic
AAGTGAGAGTTGGGAACCAT+GGG 0.544733 3_3:-61385277 None:intergenic
AAAAGAGAGAGGAGAGCTAG+AGG 0.545345 3_3:+61387787 Msa0462380:CDS
TTGCATACTCTCTAAAAGCC+CGG 0.546522 3_3:+61389644 Msa0462380:CDS
AAGGACCTTGTCTGTAAGGA+AGG 0.546851 3_3:+61391524 Msa0462380:CDS
AAAATCAATTCCTCGGGGCA+TGG 0.547293 3_3:-61391483 None:intergenic
CGTGTCATGTCCTTGGATGT+AGG 0.548440 3_3:+61387746 Msa0462380:CDS
ATATAAAGTGCAACCTCACT+CGG 0.551522 3_3:-61389060 None:intergenic
AAACCTGAGAATCCGTAAGA+TGG 0.553283 3_3:-61390660 None:intergenic
TGAGTCAAGTATGAGTTCAC+TGG 0.553540 3_3:-61389841 None:intergenic
CGTTTAGTACCAAAAGAAAA+CGG 0.553800 3_3:-61385776 None:intergenic
AACTGACCCCTTCCAAGTGA+AGG 0.554059 3_3:-61388053 None:intergenic
CAGAATAGTAAAGTTGCTAT+GGG 0.554764 3_3:-61390193 None:intergenic
GAGCCAGGTTATGTGTCCAA+TGG 0.555649 3_3:+61387188 Msa0462380:CDS
CGGGTCAAACCCAGATCAGT+TGG 0.556987 3_3:+61387115 Msa0462380:CDS
TACTCAAGGGTGACTTGTGT+CGG 0.559111 3_3:-61391726 None:intergenic
CTCCATAACCAACATAACCT+GGG 0.561726 3_3:-61390519 None:intergenic
TTTCTCTCCAATAATCATCC+GGG 0.562344 3_3:-61389662 None:intergenic
AAAGCAACGAAAATATGTTC+AGG 0.563495 3_3:-61385854 None:intergenic
AACTGGAATTCCTGACCAGA+GGG 0.563796 3_3:-61390026 None:intergenic
GAAGTGAGAGTTGGGAACCA+TGG 0.564089 3_3:-61385278 None:intergenic
CTTCTGTATATCTGCACTTG+TGG 0.566189 3_3:-61389482 None:intergenic
TTCACACACTTGTTCAATCA+GGG 0.566651 3_3:+61387976 Msa0462380:CDS
ACCATTGTACAGAAGTAGCC+TGG 0.568735 3_3:+61391753 Msa0462380:three_prime_UTR
GATGAAAGAAACGAGAGAGA+AGG 0.572401 3_3:-61385380 None:intergenic
GCTTTGATGAAAGTTGATGA+TGG 0.573069 3_3:+61385872 Msa0462380:CDS
AATTTGCTTAAACCTTCACT+TGG 0.579870 3_3:+61388041 Msa0462380:CDS
AATCAGCCCAACACTTGCAC+GGG 0.580208 3_3:-61387407 None:intergenic
GATCAAGCTGATTTATAACA+AGG 0.584174 3_3:-61391688 None:intergenic
TTGTTCAATCAGGGACAACC+GGG 0.588641 3_3:+61387985 Msa0462380:CDS
TATGTTGGTTATGGAGAAGG+GGG 0.590352 3_3:+61390526 Msa0462380:CDS
TCAATCAGGGACAACCGGGA+GGG 0.591333 3_3:+61387989 Msa0462380:CDS
AGGGTTCCGGTGAGTGAATG+CGG 0.591951 3_3:-61385313 None:intergenic
AAGGGTCGACACAACTCCAT+AGG 0.595796 3_3:+61390980 Msa0462380:CDS
GGAACGTGTGATTGGACAAG+AGG 0.597583 3_3:+61390105 Msa0462380:CDS
CTTGCTGAAAAGTGCAAGGA+AGG 0.599268 3_3:+61391626 Msa0462380:CDS
GTTTGCAATTAAGTTTACAA+TGG 0.599993 3_3:-61391585 None:intergenic
TGTAGGACTATTAATGGCTG+GGG 0.603871 3_3:+61387763 Msa0462380:CDS
AGATCTGGATAATAAACTAA+GGG 0.604041 3_3:+61390084 Msa0462380:CDS
TGAGGTGTCTGAATCAGTCA+AGG 0.607039 3_3:+61391505 Msa0462380:CDS
TGATGAAGAAGAAACTTGCA+TGG 0.607380 3_3:-61385249 None:intergenic
TGGGTCTACCGGGATCCCGA+AGG 0.609108 3_3:-61390174 None:intergenic
GGTGGTGATGACTTCAAATG+TGG 0.611159 3_3:+61390940 Msa0462380:CDS
TTAGTTGAATCATTGAGATG+AGG 0.614874 3_3:-61385707 None:intergenic
CATTAATAGTCCTACATCCA+AGG 0.615573 3_3:-61387756 None:intergenic
GCTCAACAGGATAGATGAAG+TGG 0.616515 3_3:+61391093 Msa0462380:CDS
ATAGCAACTTTACTATTCTG+TGG 0.617864 3_3:+61390196 Msa0462380:CDS
TAGAAGAAAACCATTTACTG+TGG 0.618481 3_3:+61390567 Msa0462380:CDS
ATATAATGGATTGAAATCGA+TGG 0.619461 3_3:+61391033 Msa0462380:CDS
TTATGGTGCATCTGGCATTG+AGG 0.619554 3_3:+61389815 Msa0462380:CDS
CATAGCCTTCCTTACAGACA+AGG 0.620402 3_3:-61391529 None:intergenic
TACAATGGTTCATTACTCAA+GGG 0.620684 3_3:-61391739 None:intergenic
ACGTGTGATTGGACAAGAGG+AGG 0.625107 3_3:+61390108 Msa0462380:CDS
TGTTTGATTCTTATGTGATG+AGG 0.625400 3_3:+61391841 Msa0462380:three_prime_UTR
ATCAAGCTGATTTATAACAA+GGG 0.625901 3_3:-61391687 None:intergenic
TTGTACAGAAGTAGCCTGGT+AGG 0.629746 3_3:+61391757 Msa0462380:three_prime_UTR
AATGGCATACACGTCACTGA+AGG 0.631785 3_3:-61385087 None:intergenic
GTATGCGGTGGCGGTTGTGG+TGG 0.633005 3_3:-61385351 None:intergenic
GGGAAAACAGCTATTGCAGA+GGG 0.636174 3_3:+61387529 Msa0462380:CDS
GTGGTGATGACTTCAAATGT+GGG 0.637406 3_3:+61390941 Msa0462380:CDS
TTATGTTGGTTATGGAGAAG+GGG 0.637629 3_3:+61390525 Msa0462380:CDS
ATTGCTTGCTGAAAAGTGCA+AGG 0.637883 3_3:+61391622 Msa0462380:CDS
TTCAATCAGGGACAACCGGG+AGG 0.637993 3_3:+61387988 Msa0462380:CDS
AGTTACGGTGAACGTGAACG+TGG 0.638260 3_3:-61385483 None:intergenic
GACTTATATATACACCTACC+AGG 0.638917 3_3:-61391771 None:intergenic
GAACTGGAATTCCTGACCAG+AGG 0.642699 3_3:-61390027 None:intergenic
ATGGCTGGGGCAAAAGAGAG+AGG 0.645640 3_3:+61387776 Msa0462380:CDS
AAAGTTGCTATGGGTCTACC+GGG 0.647341 3_3:-61390184 None:intergenic
GAGAGAAGGTGGTGAGTATG+CGG 0.647717 3_3:-61385366 None:intergenic
TGCTCTATCACAATTCTGCG+TGG 0.649091 3_3:+61387375 Msa0462380:CDS
TTTACAATGGCTCTCCTGAG+AGG 0.650300 3_3:-61391572 None:intergenic
CCAGGTTATGTGTCCAATGG+GGG 0.650317 3_3:+61387191 Msa0462380:CDS
CGATGGTAATTGAAGAACTG+AGG 0.650720 3_3:+61391050 Msa0462380:CDS
TCCATAACCAACATAACCTG+GGG 0.651186 3_3:-61390518 None:intergenic
GCCAGGTTATGTGTCCAATG+GGG 0.659821 3_3:+61387190 Msa0462380:CDS
AAAAGGATAAGGCTTTGGCA+CGG 0.663550 3_3:+61389010 Msa0462380:CDS
TTGGATTGATGAGCCGAGTG+AGG 0.663720 3_3:+61389047 Msa0462380:CDS
ACCAGGCTACTTCTGTACAA+TGG 0.670061 3_3:-61391754 None:intergenic
AGAAGGTGGTGAGTATGCGG+TGG 0.674042 3_3:-61385363 None:intergenic
GTTGTGTCGACCCTTAGCAA+TGG 0.675286 3_3:-61390972 None:intergenic
TGGGAAAACAGCTATTGCAG+AGG 0.677479 3_3:+61387528 Msa0462380:CDS
ACAACAAATCTATATCACAA+AGG 0.686685 3_3:+61387216 Msa0462380:CDS
TGGTGATGACTTCAAATGTG+GGG 0.688027 3_3:+61390942 Msa0462380:CDS
AGGATAAGGCTTTGGCACGG+CGG 0.694664 3_3:+61389013 Msa0462380:CDS
CAACAGGATAGATGAAGTGG+TGG 0.695003 3_3:+61391096 Msa0462380:CDS
ACCTCAAAATCAATTCCTCG+GGG 0.719499 3_3:-61391488 None:intergenic
GTTCCGGTGAGTGAATGCGG+CGG 0.720093 3_3:-61385310 None:intergenic
TCTGTGAAGAGATCTCGAGT+CGG 0.722132 3_3:+61390151 Msa0462380:CDS
GTGAAAAGGACCATGCCCCG+AGG 0.751275 3_3:+61391473 Msa0462380:CDS
CCATAACCAACATAACCTGG+GGG 0.752062 3_3:-61390517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAACATAAAAATTTA+GGG - chr3_3:61390870-61390889 None:intergenic 10.0%
!! AACAATAAACATAAAAATTT+AGG - chr3_3:61390871-61390890 None:intergenic 10.0%
!! ACTTATAATATATTTCCATT+TGG + chr3_3:61385945-61385964 Msa0462380:intron 15.0%
!! CAATTTAAATTCAACTTTAA+AGG + chr3_3:61386394-61386413 Msa0462380:intron 15.0%
!! TAGTTTGAAAAATATTCTTT+GGG + chr3_3:61386844-61386863 Msa0462380:intron 15.0%
!! AACAAAAGAAAAACAAATAT+TGG - chr3_3:61386958-61386977 None:intergenic 15.0%
!! AGATAGAAACATATTAATTA+AGG - chr3_3:61387674-61387693 None:intergenic 15.0%
!! TCTTTGCAATAAATAATTAA+GGG - chr3_3:61389217-61389236 None:intergenic 15.0%
!! TTAAGATTGTTATAGAAAAA+AGG + chr3_3:61389269-61389288 Msa0462380:intron 15.0%
!! AGATCAAATTATGATTAAAA+TGG - chr3_3:61389385-61389404 None:intergenic 15.0%
!!! TTTATTTAGTCATTTTTGTT+TGG + chr3_3:61391243-61391262 Msa0462380:intron 15.0%
!! TTAAATTTAACTGCTTAAAA+CGG - chr3_3:61391290-61391309 None:intergenic 15.0%
!! ATATATTTCCATTTGGTATT+TGG + chr3_3:61385952-61385971 Msa0462380:intron 20.0%
!! AACTTATCAAAGTACATATT+TGG - chr3_3:61386499-61386518 None:intergenic 20.0%
!! ATATGTACTTTGATAAGTTT+CGG + chr3_3:61386500-61386519 Msa0462380:intron 20.0%
!! CTAGTTTGAAAAATATTCTT+TGG + chr3_3:61386843-61386862 Msa0462380:intron 20.0%
!!! TTTGTTTTTCTTTTGTTTTG+TGG + chr3_3:61386961-61386980 Msa0462380:intron 20.0%
!!! GTTTTATGATTTGATTTTGA+TGG + chr3_3:61387295-61387314 Msa0462380:intron 20.0%
!!! TTAATATGTTTCTATCTACT+TGG + chr3_3:61387677-61387696 Msa0462380:intron 20.0%
!!! CTTTTATTAATTTTGTAACG+CGG - chr3_3:61387814-61387833 None:intergenic 20.0%
!! ATAAAAGATATAATAGAGTC+AGG + chr3_3:61387827-61387846 Msa0462380:CDS 20.0%
!! ATAAATATTCAAGTATCACT+TGG - chr3_3:61388126-61388145 None:intergenic 20.0%
!!! TCCATATATTTTCATGTATA+AGG + chr3_3:61388570-61388589 Msa0462380:intron 20.0%
!!! TTTTTGTAATTTTAATTGGG+AGG + chr3_3:61388695-61388714 Msa0462380:intron 20.0%
!!! TTTTGTAATTTTAATTGGGA+GGG + chr3_3:61388696-61388715 Msa0462380:intron 20.0%
!!! ATGAATTTTTCTTGAATAGT+TGG + chr3_3:61388802-61388821 Msa0462380:intron 20.0%
!!! TGATCATTTTTGTATAAGAT+GGG + chr3_3:61388860-61388879 Msa0462380:intron 20.0%
!! CTCTTTGCAATAAATAATTA+AGG - chr3_3:61389218-61389237 None:intergenic 20.0%
!!! TTTTTTTGGCATTAATAATG+AGG + chr3_3:61390302-61390321 Msa0462380:intron 20.0%
!! AGAAGAATGTTAAATATATC+TGG - chr3_3:61390622-61390641 None:intergenic 20.0%
!! TAACATTCTTCTTCAATTAA+TGG + chr3_3:61390630-61390649 Msa0462380:CDS 20.0%
!!! TTTGAAAAACTTGTTCTAAT+AGG + chr3_3:61390889-61390908 Msa0462380:intron 20.0%
!!! TTGAAAAACTTGTTCTAATA+GGG + chr3_3:61390890-61390909 Msa0462380:intron 20.0%
!! AGTTTCATTTAAAAATGCAT+TGG + chr3_3:61390919-61390938 Msa0462380:CDS 20.0%
!! AAGCAGTTAAATTTAAATAC+TGG + chr3_3:61391294-61391313 Msa0462380:intron 20.0%
!! AACTAACAAGTTAGACATTT+TGG + chr3_3:61385059-61385078 Msa0462380:five_prime_UTR 25.0%
!!! TTAGATTTTGAAAGTGTTGA+GGG - chr3_3:61385162-61385181 None:intergenic 25.0%
!!! TTTAGATTTTGAAAGTGTTG+AGG - chr3_3:61385163-61385182 None:intergenic 25.0%
! TTAACTATGGTAAGTGATTA+TGG - chr3_3:61385215-61385234 None:intergenic 25.0%
! TTGAGAGTGAAAATTAACTA+TGG - chr3_3:61385228-61385247 None:intergenic 25.0%
!! GAAGAATTTTGCTTCTTTTT+CGG - chr3_3:61385558-61385577 None:intergenic 25.0%
!!! ATTTGGAGTATTGTTGTTTT+TGG + chr3_3:61385969-61385988 Msa0462380:intron 25.0%
! TGGTTCAAATAAGTTTCTTT+AGG - chr3_3:61386062-61386081 None:intergenic 25.0%
! AGAAACTTATTTGAACCAAA+TGG + chr3_3:61386064-61386083 Msa0462380:intron 25.0%
! ATAACCAAGAAACAAATGTT+GGG + chr3_3:61386172-61386191 Msa0462380:intron 25.0%
!!! GAACTTTTTAAGAATAATGC+TGG + chr3_3:61386226-61386245 Msa0462380:intron 25.0%
! CAAAATCAATCTCAATTTGT+CGG + chr3_3:61386748-61386767 Msa0462380:intron 25.0%
!! TTCTTTGGGCTAAAATTTTA+AGG + chr3_3:61386858-61386877 Msa0462380:intron 25.0%
! ACAACAAATCTATATCACAA+AGG + chr3_3:61387216-61387235 Msa0462380:CDS 25.0%
!! TTTTTCTCATATTCATTCTC+TGG + chr3_3:61387335-61387354 Msa0462380:intron 25.0%
! ACTAGCAATTGTTTATTTGA+TGG - chr3_3:61388165-61388184 None:intergenic 25.0%
!! CAGTTACTTTGAAAAATGTT+GGG - chr3_3:61388254-61388273 None:intergenic 25.0%
!! ACAGTTACTTTGAAAAATGT+TGG - chr3_3:61388255-61388274 None:intergenic 25.0%
! AAGTTGTCTTTATGAAATAC+TGG + chr3_3:61388331-61388350 Msa0462380:intron 25.0%
! AGTTGTCTTTATGAAATACT+GGG + chr3_3:61388332-61388351 Msa0462380:intron 25.0%
! GCCTTATACATGAAAATATA+TGG - chr3_3:61388574-61388593 None:intergenic 25.0%
! ATTCAAGAAAAATTCATCAG+AGG - chr3_3:61388799-61388818 None:intergenic 25.0%
! GTTCAATTATATTATGCAGT+CGG + chr3_3:61388824-61388843 Msa0462380:intron 25.0%
!!! GTGATCATTTTTGTATAAGA+TGG + chr3_3:61388859-61388878 Msa0462380:intron 25.0%
! TTATTCATAGTGACAAGTTA+TGG - chr3_3:61388930-61388949 None:intergenic 25.0%
! ATCAAATGTACCAAGTTTAT+TGG + chr3_3:61389301-61389320 Msa0462380:intron 25.0%
! TGATGCAATTAAGATACTTA+TGG + chr3_3:61389434-61389453 Msa0462380:CDS 25.0%
! GATGCAATTAAGATACTTAT+GGG + chr3_3:61389435-61389454 Msa0462380:CDS 25.0%
!!! GTGTTCTTTTTTCATCTTAA+AGG - chr3_3:61389619-61389638 None:intergenic 25.0%
! AAAAGAAAGAATTCTGCTTT+GGG - chr3_3:61389910-61389929 None:intergenic 25.0%
! TAGATCTGGATAATAAACTA+AGG + chr3_3:61390083-61390102 Msa0462380:CDS 25.0%
! AGATCTGGATAATAAACTAA+GGG + chr3_3:61390084-61390103 Msa0462380:CDS 25.0%
! GATGTGAATCTTAATTTACT+AGG + chr3_3:61390692-61390711 Msa0462380:intron 25.0%
! GAGAAAGTTTCATGTTTAAA+GGG - chr3_3:61390728-61390747 None:intergenic 25.0%
! AGAGAAAGTTTCATGTTTAA+AGG - chr3_3:61390729-61390748 None:intergenic 25.0%
! TTAAACATGAAACTTTCTCT+TGG + chr3_3:61390729-61390748 Msa0462380:intron 25.0%
! CATTTCTATATCTTCCTTTA+CGG + chr3_3:61390752-61390771 Msa0462380:intron 25.0%
! TTCATTTAAAAATGCATTGG+TGG + chr3_3:61390922-61390941 Msa0462380:CDS 25.0%
! TTCAATCCATTATATGATGT+TGG - chr3_3:61391028-61391047 None:intergenic 25.0%
!!! ATATAATGGATTGAAATCGA+TGG + chr3_3:61391033-61391052 Msa0462380:CDS 25.0%
! AGCATACACATAAAAAAACT+TGG - chr3_3:61391352-61391371 None:intergenic 25.0%
! GTTTGCAATTAAGTTTACAA+TGG - chr3_3:61391588-61391607 None:intergenic 25.0%
!! ATCAAGCTGATTTATAACAA+GGG - chr3_3:61391690-61391709 None:intergenic 25.0%
GAAAGAAGAAAAAGGAAGAA+AGG - chr3_3:61385132-61385151 None:intergenic 30.0%
!!! TAGATTTTGAAAGTGTTGAG+GGG - chr3_3:61385161-61385180 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAGAA+CGG - chr3_3:61385415-61385434 None:intergenic 30.0%
TCGTTCGAATATTGAAGTTA+CGG - chr3_3:61385501-61385520 None:intergenic 30.0%
TTAGTTGAATCATTGAGATG+AGG - chr3_3:61385710-61385729 None:intergenic 30.0%
!! ACTAACTACGTTGATGATAA+TGG + chr3_3:61385725-61385744 Msa0462380:CDS 30.0%
CGTTTAGTACCAAAAGAAAA+CGG - chr3_3:61385779-61385798 None:intergenic 30.0%
GTTCAGGATCAACAAAATTA+TGG - chr3_3:61385841-61385860 None:intergenic 30.0%
AAAGCAACGAAAATATGTTC+AGG - chr3_3:61385857-61385876 None:intergenic 30.0%
GTTCTGCTAGAATTCTTTAT+AGG + chr3_3:61385897-61385916 Msa0462380:CDS 30.0%
ACAATACTCCAAATACCAAA+TGG - chr3_3:61385963-61385982 None:intergenic 30.0%
GTTTCTTGGTTATCATTGAT+TGG - chr3_3:61386165-61386184 None:intergenic 30.0%
GATAACCAAGAAACAAATGT+TGG + chr3_3:61386171-61386190 Msa0462380:intron 30.0%
TAGTCTGACAACCAATTAAA+TGG - chr3_3:61386320-61386339 None:intergenic 30.0%
ATGAACTATGTCATATTGTC+TGG - chr3_3:61386564-61386583 None:intergenic 30.0%
AGACAATATGACATAGTTCA+TGG + chr3_3:61386563-61386582 Msa0462380:intron 30.0%
CCAAAATACCATTTGTCTTA+CGG + chr3_3:61386672-61386691 Msa0462380:intron 30.0%
!!! TTGTCGGTGAAACAATTTTT+TGG + chr3_3:61386764-61386783 Msa0462380:intron 30.0%
!!! TGTCGGTGAAACAATTTTTT+GGG + chr3_3:61386765-61386784 Msa0462380:intron 30.0%
AAACTAGTTATGCAACTCAA+AGG - chr3_3:61386830-61386849 None:intergenic 30.0%
!!! CATTAGCTTTTTAAAGAGTG+TGG + chr3_3:61386911-61386930 Msa0462380:intron 30.0%
TTGCATACTAGCAACATTAA+TGG - chr3_3:61387082-61387101 None:intergenic 30.0%
TATGCAAATGATTTCAGACT+CGG + chr3_3:61387095-61387114 Msa0462380:intron 30.0%
!!! TTTCTTGCCTTTTGTTTTAG+CGG - chr3_3:61387261-61387280 None:intergenic 30.0%
!! GATTTGATTTTGATGGTTGA+AGG + chr3_3:61387302-61387321 Msa0462380:intron 30.0%
TTCTTTGAACTTCAACTTCT+CGG - chr3_3:61387447-61387466 None:intergenic 30.0%
!!! TTGGATTGCTTTTTGTCTTT+CGG - chr3_3:61387486-61387505 None:intergenic 30.0%
AAAAAGCAATCCAATTCTTC+TGG + chr3_3:61387492-61387511 Msa0462380:CDS 30.0%
AAAAGCAATCCAATTCTTCT+GGG + chr3_3:61387493-61387512 Msa0462380:CDS 30.0%
GAGTTGTGTTAATATATGTG+TGG + chr3_3:61387878-61387897 Msa0462380:intron 30.0%
! AATTTGCTTAAACCTTCACT+TGG + chr3_3:61388041-61388060 Msa0462380:CDS 30.0%
GCTAGTAACGTATAAGATTA+AGG + chr3_3:61388179-61388198 Msa0462380:intron 30.0%
ACGTATAAGATTAAGGTTAG+AGG + chr3_3:61388186-61388205 Msa0462380:intron 30.0%
CAAGATTAGCATTTAACATC+TGG + chr3_3:61388281-61388300 Msa0462380:intron 30.0%
! TTCTAGTACATGTAACCTTT+TGG - chr3_3:61388454-61388473 None:intergenic 30.0%
AGTTATATTCAACAACGCTA+AGG + chr3_3:61388610-61388629 Msa0462380:intron 30.0%
!! ATACAGGCTTCATTTTGAAA+AGG + chr3_3:61388993-61389012 Msa0462380:CDS 30.0%
!! GCTTCATTTTGAAAAGGATA+AGG + chr3_3:61388999-61389018 Msa0462380:CDS 30.0%
!! TTTTGAAAAGGATAAGGCTT+TGG + chr3_3:61389005-61389024 Msa0462380:CDS 30.0%
ATTGCAAAGAGAGAAATAGA+TGG + chr3_3:61389227-61389246 Msa0462380:intron 30.0%
!! ACCAAGTTTATTGGTTTGTT+TGG + chr3_3:61389310-61389329 Msa0462380:intron 30.0%
ACCAAACAAACCAATAAACT+TGG - chr3_3:61389314-61389333 None:intergenic 30.0%
ATATACAGAAGATGCCATAA+AGG + chr3_3:61389494-61389513 Msa0462380:CDS 30.0%
ATTTCTCTCCAATAATCATC+CGG - chr3_3:61389666-61389685 None:intergenic 30.0%
AGTTGAAATTTCTTACTCTC+AGG + chr3_3:61389770-61389789 Msa0462380:intron 30.0%
! GAGAGCATGCTTAAATATTA+TGG + chr3_3:61389798-61389817 Msa0462380:CDS 30.0%
CTTAAATATTATGGTGCATC+TGG + chr3_3:61389807-61389826 Msa0462380:CDS 30.0%
CAAAAGAAAGAATTCTGCTT+TGG - chr3_3:61389911-61389930 None:intergenic 30.0%
TGTGCATATCTATCTAGATT+TGG + chr3_3:61389929-61389948 Msa0462380:intron 30.0%
!!! ATCTAGATTTGGTTTTTGAG+TGG + chr3_3:61389940-61389959 Msa0462380:intron 30.0%
! CTGACATGTTATTGTGTTTT+AGG + chr3_3:61389963-61389982 Msa0462380:intron 30.0%
!! GTTTTAGGTGTATAGAAGTT+AGG + chr3_3:61389978-61389997 Msa0462380:intron 30.0%
CAGAATAGTAAAGTTGCTAT+GGG - chr3_3:61390196-61390215 None:intergenic 30.0%
ACAGAATAGTAAAGTTGCTA+TGG - chr3_3:61390197-61390216 None:intergenic 30.0%
ATAGCAACTTTACTATTCTG+TGG + chr3_3:61390196-61390215 Msa0462380:CDS 30.0%
TCCTGAAATGATAGTATGAA+AGG - chr3_3:61390427-61390446 None:intergenic 30.0%
CATACTATCATTTCAGGAAA+CGG + chr3_3:61390429-61390448 Msa0462380:intron 30.0%
GTTAGACATGAGTGAATATA+TGG + chr3_3:61390462-61390481 Msa0462380:CDS 30.0%
! TGGTTTTCTTCTAATAGCTT+CGG - chr3_3:61390560-61390579 None:intergenic 30.0%
TAGAAGAAAACCATTTACTG+TGG + chr3_3:61390567-61390586 Msa0462380:CDS 30.0%
TCAAACAAAACCACAGTAAA+TGG - chr3_3:61390580-61390599 None:intergenic 30.0%
CTTCTTCAATTAATGGAAGA+TGG + chr3_3:61390637-61390656 Msa0462380:CDS 30.0%
ATTAAGATTCACATCAGCAT+CGG - chr3_3:61390687-61390706 None:intergenic 30.0%
! ATCTGAAATGAAGAAACCTA+TGG - chr3_3:61390999-61391018 None:intergenic 30.0%
GACAAACCAACATCATATAA+TGG + chr3_3:61391019-61391038 Msa0462380:CDS 30.0%
AAACTTAATTGCAAACCCAT+TGG + chr3_3:61391592-61391611 Msa0462380:CDS 30.0%
! TGACACTATCTTCATTGATT+TGG + chr3_3:61391649-61391668 Msa0462380:CDS 30.0%
! GATCAAGCTGATTTATAACA+AGG - chr3_3:61391691-61391710 None:intergenic 30.0%
TACAATGGTTCATTACTCAA+GGG - chr3_3:61391742-61391761 None:intergenic 30.0%
! CTGTAAAGTCAAAGATGTTT+TGG + chr3_3:61391799-61391818 Msa0462380:three_prime_UTR 30.0%
CAAACACTAAGCTAACAAAT+AGG - chr3_3:61391827-61391846 None:intergenic 30.0%
TGTTTGATTCTTATGTGATG+AGG + chr3_3:61391841-61391860 Msa0462380:three_prime_UTR 30.0%
AAAAAGGAAGAAAGGAAGGA+AGG - chr3_3:61385124-61385143 None:intergenic 35.0%
GAAGAAAAAGGAAGAAAGGA+AGG - chr3_3:61385128-61385147 None:intergenic 35.0%
GGAAGGAAGAAAGAAGAAAA+AGG - chr3_3:61385140-61385159 None:intergenic 35.0%
TGATGAAGAAGAAACTTGCA+TGG - chr3_3:61385252-61385271 None:intergenic 35.0%
!! TGTTTTTGTTGATGTGAGTG+AGG - chr3_3:61385444-61385463 None:intergenic 35.0%
GAGACAAAACGTTCTCAAAA+CGG + chr3_3:61385635-61385654 Msa0462380:CDS 35.0%
! CAAAACGGTTTTCTTGATTC+TGG + chr3_3:61385650-61385669 Msa0462380:CDS 35.0%
!! GCTTTGATGAAAGTTGATGA+TGG + chr3_3:61385872-61385891 Msa0462380:CDS 35.0%
! ATAGCCCAACATTTGTTTCT+TGG - chr3_3:61386179-61386198 None:intergenic 35.0%
TCTGACAACCAATTAAATGG+AGG - chr3_3:61386317-61386336 None:intergenic 35.0%
ATATTTGGAAACACAGCCAA+TGG - chr3_3:61386484-61386503 None:intergenic 35.0%
! TGAGATTGGTAATTGGGATT+TGG + chr3_3:61386524-61386543 Msa0462380:intron 35.0%
! CCGTAAGACAAATGGTATTT+TGG - chr3_3:61386675-61386694 None:intergenic 35.0%
! ACCATTTGTCTTACGGTTTT+AGG + chr3_3:61386679-61386698 Msa0462380:intron 35.0%
ACCTAAAACCGTAAGACAAA+TGG - chr3_3:61386683-61386702 None:intergenic 35.0%
!! ATTTTGACCAGAGTATGCAA+GGG - chr3_3:61386734-61386753 None:intergenic 35.0%
ACTCAAAGGACTTATAAACC+AGG - chr3_3:61386816-61386835 None:intergenic 35.0%
! GTTTTGTGGCAATAATGATC+TGG + chr3_3:61386975-61386994 Msa0462380:intron 35.0%
ATGCAAATGATTTCAGACTC+GGG + chr3_3:61387096-61387115 Msa0462380:intron 35.0%
TTCAAGACTACAAAAAGAGC+TGG + chr3_3:61387151-61387170 Msa0462380:CDS 35.0%
! GACTGGCAATTCTTATTTCT+CGG + chr3_3:61387551-61387570 Msa0462380:CDS 35.0%
! ACTGGCAATTCTTATTTCTC+GGG + chr3_3:61387552-61387571 Msa0462380:CDS 35.0%
! AGAAGTTGCTCCTTTTCTAT+TGG + chr3_3:61387576-61387595 Msa0462380:CDS 35.0%
GATAGACACACCAATAGAAA+AGG - chr3_3:61387589-61387608 None:intergenic 35.0%
CATTAATAGTCCTACATCCA+AGG - chr3_3:61387759-61387778 None:intergenic 35.0%
CTTGGATGTAGGACTATTAA+TGG + chr3_3:61387757-61387776 Msa0462380:CDS 35.0%
ATGTAGGACTATTAATGGCT+GGG + chr3_3:61387762-61387781 Msa0462380:CDS 35.0%
!!! AGAGGATTGTTTTAGCTCAT+CGG + chr3_3:61387910-61387929 Msa0462380:intron 35.0%
TTCACACACTTGTTCAATCA+GGG + chr3_3:61387976-61387995 Msa0462380:CDS 35.0%
AACTAGCAGATGAGATTACA+GGG - chr3_3:61388094-61388113 None:intergenic 35.0%
AAACTAGCAGATGAGATTAC+AGG - chr3_3:61388095-61388114 None:intergenic 35.0%
TCAAGTATCACTTGGAACAA+AGG - chr3_3:61388118-61388137 None:intergenic 35.0%
! AGAAGTGTAGTAACTGTAAC+TGG - chr3_3:61388228-61388247 None:intergenic 35.0%
GCATTTAACATCTGGAAAGT+AGG + chr3_3:61388289-61388308 Msa0462380:intron 35.0%
TTAACATCTGGAAAGTAGGA+AGG + chr3_3:61388293-61388312 Msa0462380:intron 35.0%
TGTCTTTATGAAATACTGGG+AGG + chr3_3:61388335-61388354 Msa0462380:intron 35.0%
TAATAGACTCACTGCTTAGA+TGG + chr3_3:61388371-61388390 Msa0462380:intron 35.0%
AGATATGAGTGAGTGTTAAC+TGG + chr3_3:61388397-61388416 Msa0462380:intron 35.0%
TGAGGGCAAATTTGTATGTT+CGG + chr3_3:61388510-61388529 Msa0462380:intron 35.0%
ATGTATAAGGCTGTGAATAC+TGG + chr3_3:61388583-61388602 Msa0462380:intron 35.0%
ATAAAATTCCAACAGCAGAG+AGG - chr3_3:61388668-61388687 None:intergenic 35.0%
! TTGTTTGGAGAGAGTAGTTT+TGG + chr3_3:61388724-61388743 Msa0462380:intron 35.0%
!! GTTTTGGACTTTGAATTCTC+TGG + chr3_3:61388740-61388759 Msa0462380:intron 35.0%
CTACCACTATTGATGAATAC+AGG + chr3_3:61388977-61388996 Msa0462380:CDS 35.0%
AAGCCTGTATTCATCAATAG+TGG - chr3_3:61388983-61389002 None:intergenic 35.0%
ATATAAAGTGCAACCTCACT+CGG - chr3_3:61389063-61389082 None:intergenic 35.0%
TACAAAAGCGACAGTTACAA+AGG - chr3_3:61389121-61389140 None:intergenic 35.0%
! TGAACTGTGTTGTTGTGTAT+AGG + chr3_3:61389410-61389429 Msa0462380:intron 35.0%
CAGCAAGATACATAGTTGAT+AGG + chr3_3:61389532-61389551 Msa0462380:CDS 35.0%
!! ATGAGGTCAATAGCTTTATC+AGG - chr3_3:61389564-61389583 None:intergenic 35.0%
TTTCTCTCCAATAATCATCC+GGG - chr3_3:61389665-61389684 None:intergenic 35.0%
AAGAAGTCTTCTGTTAGATC+TGG + chr3_3:61390069-61390088 Msa0462380:CDS 35.0%
TCTCTTCACAGATCTAGAAA+TGG - chr3_3:61390143-61390162 None:intergenic 35.0%
AACTGAACTAGCAAAGTCTT+TGG + chr3_3:61390237-61390256 Msa0462380:CDS 35.0%
!!! TCACACAAGGTGTGTTTTTT+TGG + chr3_3:61390288-61390307 Msa0462380:intron 35.0%
CATTTCAGAACATCGAAAAG+AGG - chr3_3:61390349-61390368 None:intergenic 35.0%
GCCTTTCATACTATCATTTC+AGG + chr3_3:61390423-61390442 Msa0462380:intron 35.0%
!! CTAATAACTTGCTCACTGAA+TGG - chr3_3:61390492-61390511 None:intergenic 35.0%
CATTCAGTGAGCAAGTTATT+AGG + chr3_3:61390490-61390509 Msa0462380:CDS 35.0%
! GTTATGTTGGTTATGGAGAA+GGG + chr3_3:61390524-61390543 Msa0462380:CDS 35.0%
! TTATGTTGGTTATGGAGAAG+GGG + chr3_3:61390525-61390544 Msa0462380:CDS 35.0%
GCAGCAGCAAATCAAATATT+TGG - chr3_3:61391448-61391467 None:intergenic 35.0%
ACACCTCAAAATCAATTCCT+CGG - chr3_3:61391493-61391512 None:intergenic 35.0%
!! TTCATTGATTTGGATGCCAA+TGG + chr3_3:61391659-61391678 Msa0462380:CDS 35.0%
!! TATAACAAGGGTGTTACCAT+TGG - chr3_3:61391678-61391697 None:intergenic 35.0%
GTACAATGGTTCATTACTCA+AGG - chr3_3:61391743-61391762 None:intergenic 35.0%
GACTTATATATACACCTACC+AGG - chr3_3:61391774-61391793 None:intergenic 35.0%
AGGAAGGAATAGAGTGAGAA+TGG - chr3_3:61385108-61385127 None:intergenic 40.0%
!!! TTTTGAAAGTGTTGAGGGGA+AGG - chr3_3:61385157-61385176 None:intergenic 40.0%
CTTCTTCATCACTTAACCCA+TGG + chr3_3:61385261-61385280 Msa0462380:CDS 40.0%
GATGAAAGAAACGAGAGAGA+AGG - chr3_3:61385383-61385402 None:intergenic 40.0%
CTATGAGACCAAGCATGATA+TGG - chr3_3:61385604-61385623 None:intergenic 40.0%
GTACCAAAAGAAAACGGAAC+AGG - chr3_3:61385773-61385792 None:intergenic 40.0%
TATCGAACCTGCAACAACTA+AGG - chr3_3:61386134-61386153 None:intergenic 40.0%
TAGTGACAGAAGCTACACTT+TGG + chr3_3:61386453-61386472 Msa0462380:intron 40.0%
TGATAAGTTTCGGCTGAGAT+TGG + chr3_3:61386510-61386529 Msa0462380:intron 40.0%
! TTTCGGCTGAGATTGGTAAT+TGG + chr3_3:61386517-61386536 Msa0462380:intron 40.0%
! TTCGGCTGAGATTGGTAATT+GGG + chr3_3:61386518-61386537 Msa0462380:intron 40.0%
! TTTTGACCAGAGTATGCAAG+GGG - chr3_3:61386733-61386752 None:intergenic 40.0%
!! GATTTTGACCAGAGTATGCA+AGG - chr3_3:61386735-61386754 None:intergenic 40.0%
!!! ATTTTTTGGGCTACCCGAAA+AGG + chr3_3:61386778-61386797 Msa0462380:intron 40.0%
! ATATCATCGTGGCTTGTGAT+TGG + chr3_3:61387002-61387021 Msa0462380:intron 40.0%
!! TCTATATCACAAAGGCGTTC+TGG + chr3_3:61387224-61387243 Msa0462380:CDS 40.0%
GATGTAGGACTATTAATGGC+TGG + chr3_3:61387761-61387780 Msa0462380:CDS 40.0%
TGTAGGACTATTAATGGCTG+GGG + chr3_3:61387763-61387782 Msa0462380:CDS 40.0%
AAAGAATGACATCACCTGCA+AGG - chr3_3:61387944-61387963 None:intergenic 40.0%
GTTCACACACTTGTTCAATC+AGG + chr3_3:61387975-61387994 Msa0462380:CDS 40.0%
TGCTTAAACCTTCACTTGGA+AGG + chr3_3:61388045-61388064 Msa0462380:CDS 40.0%
GCTTAAACCTTCACTTGGAA+GGG + chr3_3:61388046-61388065 Msa0462380:CDS 40.0%
CTTAAACCTTCACTTGGAAG+GGG + chr3_3:61388047-61388066 Msa0462380:CDS 40.0%
!!! CATGTAACCTTTTGGTTCCA+TGG - chr3_3:61388446-61388465 None:intergenic 40.0%
TGCAATCTGTTGCTGAAATG+AGG + chr3_3:61388492-61388511 Msa0462380:intron 40.0%
GCAATCTGTTGCTGAAATGA+GGG + chr3_3:61388493-61388512 Msa0462380:intron 40.0%
!! ATTGGGAGGGATTTGTTGTT+TGG + chr3_3:61388709-61388728 Msa0462380:intron 40.0%
! AAAAGGATAAGGCTTTGGCA+CGG + chr3_3:61389010-61389029 Msa0462380:CDS 40.0%
GACAGTTACAAAGGAGAAGA+GGG - chr3_3:61389112-61389131 None:intergenic 40.0%
CCTTATAGCGACAGCTAAAA+CGG + chr3_3:61389346-61389365 Msa0462380:intron 40.0%
CTTCTGTATATCTGCACTTG+TGG - chr3_3:61389485-61389504 None:intergenic 40.0%
CAAATGAACTGCAGCCTTTA+TGG - chr3_3:61389511-61389530 None:intergenic 40.0%
ATTGACCTCATTGATGAAGC+AGG + chr3_3:61389573-61389592 Msa0462380:CDS 40.0%
TACTTCCTGCTTCATCAATG+AGG - chr3_3:61389581-61389600 None:intergenic 40.0%
! TTGCATACTCTCTAAAAGCC+CGG + chr3_3:61389644-61389663 Msa0462380:CDS 40.0%
CTAAAAGCCCGGATGATTAT+TGG + chr3_3:61389655-61389674 Msa0462380:CDS 40.0%
TGTTCAGTCCACGCTTAAAA+TGG + chr3_3:61389692-61389711 Msa0462380:CDS 40.0%
GTCCACGCTTAAAATGGTAA+TGG + chr3_3:61389698-61389717 Msa0462380:intron 40.0%
! TGCCATTACCATTTTAAGCG+TGG - chr3_3:61389703-61389722 None:intergenic 40.0%
!! CGCTTAAAATGGTAATGGCA+TGG + chr3_3:61389703-61389722 Msa0462380:intron 40.0%
AATTTCTTACTCTCAGGTGC+AGG + chr3_3:61389776-61389795 Msa0462380:intron 40.0%
TGAGTCAAGTATGAGTTCAC+TGG - chr3_3:61389844-61389863 None:intergenic 40.0%
GCAACTGTTGCTATATGATC+AGG - chr3_3:61390004-61390023 None:intergenic 40.0%
AAACTAAGGGAACGTGTGAT+TGG + chr3_3:61390097-61390116 Msa0462380:CDS 40.0%
TAAAGTTGCTATGGGTCTAC+CGG - chr3_3:61390188-61390207 None:intergenic 40.0%
!! TCTTTGGCTGCATGCTATTT+TGG + chr3_3:61390253-61390272 Msa0462380:CDS 40.0%
GATCGGTAAGTATTCACACA+AGG + chr3_3:61390275-61390294 Msa0462380:intron 40.0%
TCTGTACATGTCACATCGAT+TGG + chr3_3:61390381-61390400 Msa0462380:intron 40.0%
TTCAGGAAACGGACATGATA+AGG + chr3_3:61390440-61390459 Msa0462380:intron 40.0%
TCCATAACCAACATAACCTG+GGG - chr3_3:61390521-61390540 None:intergenic 40.0%
CTCCATAACCAACATAACCT+GGG - chr3_3:61390522-61390541 None:intergenic 40.0%
TCTCCATAACCAACATAACC+TGG - chr3_3:61390523-61390542 None:intergenic 40.0%
! GGTTATGTTGGTTATGGAGA+AGG + chr3_3:61390523-61390542 Msa0462380:CDS 40.0%
! TATGTTGGTTATGGAGAAGG+GGG + chr3_3:61390526-61390545 Msa0462380:CDS 40.0%
AATGGAAGATGGCCATCTTA+CGG + chr3_3:61390648-61390667 Msa0462380:CDS 40.0%
AAACCTGAGAATCCGTAAGA+TGG - chr3_3:61390663-61390682 None:intergenic 40.0%
TACTTGCATAGAAGCCGTAA+AGG - chr3_3:61390769-61390788 None:intergenic 40.0%
! GTGGTGATGACTTCAAATGT+GGG + chr3_3:61390941-61390960 Msa0462380:CDS 40.0%
! TGGTGATGACTTCAAATGTG+GGG + chr3_3:61390942-61390961 Msa0462380:CDS 40.0%
CGATGGTAATTGAAGAACTG+AGG + chr3_3:61391050-61391069 Msa0462380:CDS 40.0%
GCCTCCAAAGTGAATATCAT+CGG - chr3_3:61391192-61391211 None:intergenic 40.0%
ACCTCAAAATCAATTCCTCG+GGG - chr3_3:61391491-61391510 None:intergenic 40.0%
CACCTCAAAATCAATTCCTC+GGG - chr3_3:61391492-61391511 None:intergenic 40.0%
! ATTGCTTGCTGAAAAGTGCA+AGG + chr3_3:61391622-61391641 Msa0462380:CDS 40.0%
AATGGCATACACGTCACTGA+AGG - chr3_3:61385090-61385109 None:intergenic 45.0%
AAGTGAGAGTTGGGAACCAT+GGG - chr3_3:61385280-61385299 None:intergenic 45.0%
GAAAGAAACGAGAGAGAAGG+TGG - chr3_3:61385380-61385399 None:intergenic 45.0%
GCATGATATGGTGTGCGTAA+AGG - chr3_3:61385592-61385611 None:intergenic 45.0%
TACGCACACCATATCATGCT+TGG + chr3_3:61385593-61385612 Msa0462380:CDS 45.0%
! CGACCTGTTCCGTTTTCTTT+TGG + chr3_3:61385767-61385786 Msa0462380:CDS 45.0%
TTAGCATCACGTGTCAACAC+CGG + chr3_3:61386091-61386110 Msa0462380:intron 45.0%
TATCGGTCCTTAGTTGTTGC+AGG + chr3_3:61386124-61386143 Msa0462380:intron 45.0%
CACTGCAGCCTCCATTTAAT+TGG + chr3_3:61386306-61386325 Msa0462380:intron 45.0%
CGATCAAAGTGAAACCAACG+CGG - chr3_3:61386431-61386450 None:intergenic 45.0%
! ACAGAAGCTACACTTTGGAG+AGG + chr3_3:61386458-61386477 Msa0462380:intron 45.0%
GGTAATTGGGATTTGGACTC+TGG + chr3_3:61386531-61386550 Msa0462380:intron 45.0%
TTTGACCAGAGTATGCAAGG+GGG - chr3_3:61386732-61386751 None:intergenic 45.0%
! GATATGACAGCAGCCTTTTC+GGG - chr3_3:61386794-61386813 None:intergenic 45.0%
! GGATATGACAGCAGCCTTTT+CGG - chr3_3:61386795-61386814 None:intergenic 45.0%
AAAAGGCTGCTGTCATATCC+TGG + chr3_3:61386795-61386814 Msa0462380:intron 45.0%
! GATCTGGAGCTATATCATCG+TGG + chr3_3:61386991-61387010 Msa0462380:intron 45.0%
CAAAAAGAGCTGGCTAGAGA+TGG + chr3_3:61387161-61387180 Msa0462380:CDS 45.0%
AGCCAGGTTATGTGTCCAAT+GGG + chr3_3:61387189-61387208 Msa0462380:CDS 45.0%
!! AGATTTGTTGTGTCCCCCAT+TGG - chr3_3:61387207-61387226 None:intergenic 45.0%
GGATCTGCCGCTAAAACAAA+AGG + chr3_3:61387251-61387270 Msa0462380:CDS 45.0%
TGCTCTATCACAATTCTGCG+TGG + chr3_3:61387375-61387394 Msa0462380:CDS 45.0%
GGGCTGATTGATCCAGTTAT+TGG + chr3_3:61387421-61387440 Msa0462380:CDS 45.0%
TCAACTTCTCGGCCAATAAC+TGG - chr3_3:61387436-61387455 None:intergenic 45.0%
TGGGAAAACAGCTATTGCAG+AGG + chr3_3:61387528-61387547 Msa0462380:CDS 45.0%
GGGAAAACAGCTATTGCAGA+GGG + chr3_3:61387529-61387548 Msa0462380:CDS 45.0%
AGGCACGTGCAATTACAGAA+GGG - chr3_3:61387654-61387673 None:intergenic 45.0%
AAGGCACGTGCAATTACAGA+AGG - chr3_3:61387655-61387674 None:intergenic 45.0%
GACAAAACGTGTCATGTCCT+TGG + chr3_3:61387739-61387758 Msa0462380:intron 45.0%
AAAAGAGAGAGGAGAGCTAG+AGG + chr3_3:61387787-61387806 Msa0462380:CDS 45.0%
CTTGTTCAATCAGGGACAAC+CGG + chr3_3:61387984-61388003 Msa0462380:CDS 45.0%
TTGTTCAATCAGGGACAACC+GGG + chr3_3:61387985-61388004 Msa0462380:CDS 45.0%
TCTTGCATATCTCCACTCCA+TGG + chr3_3:61388426-61388445 Msa0462380:intron 45.0%
!!! AACCTTTTGGTTCCATGGAG+TGG - chr3_3:61388441-61388460 None:intergenic 45.0%
TGTTAATGCCTCTCTGCTGT+TGG + chr3_3:61388657-61388676 Msa0462380:intron 45.0%
GATGCAATACACTGCACAGA+CGG - chr3_3:61388958-61388977 None:intergenic 45.0%
CGACAGTTACAAAGGAGAAG+AGG - chr3_3:61389113-61389132 None:intergenic 45.0%
!!! CCGTTTTAGCTGTCGCTATA+AGG - chr3_3:61389349-61389368 None:intergenic 45.0%
GACAGCTAAAACGGAACGAA+GGG + chr3_3:61389355-61389374 Msa0462380:intron 45.0%
GCAGCTCATGCAAAGAACAT+CGG - chr3_3:61389740-61389759 None:intergenic 45.0%
TTATGGTGCATCTGGCATTG+AGG + chr3_3:61389815-61389834 Msa0462380:CDS 45.0%
AACTGGAATTCCTGACCAGA+GGG - chr3_3:61390029-61390048 None:intergenic 45.0%
TCTGTGAAGAGATCTCGAGT+CGG + chr3_3:61390151-61390170 Msa0462380:CDS 45.0%
AAAGTTGCTATGGGTCTACC+GGG - chr3_3:61390187-61390206 None:intergenic 45.0%
TTACTATTCTGTGGCCCAAC+TGG + chr3_3:61390205-61390224 Msa0462380:CDS 45.0%
!!! GGCTGCATGCTATTTTGGAT+CGG + chr3_3:61390258-61390277 Msa0462380:CDS 45.0%
AAGTTATTAGGATCTCCCCC+AGG + chr3_3:61390502-61390521 Msa0462380:CDS 45.0%
CCATAACCAACATAACCTGG+GGG - chr3_3:61390520-61390539 None:intergenic 45.0%
! GGTGGTGATGACTTCAAATG+TGG + chr3_3:61390940-61390959 Msa0462380:CDS 45.0%
TCTATCCTGTTGAGCAGTTC+TGG - chr3_3:61391088-61391107 None:intergenic 45.0%
GCTCAACAGGATAGATGAAG+TGG + chr3_3:61391093-61391112 Msa0462380:CDS 45.0%
CAACAGGATAGATGAAGTGG+TGG + chr3_3:61391096-61391115 Msa0462380:CDS 45.0%
! ACGAACCTGTGGCTTTTCAA+GGG - chr3_3:61391131-61391150 None:intergenic 45.0%
! AACGAACCTGTGGCTTTTCA+AGG - chr3_3:61391132-61391151 None:intergenic 45.0%
ACCAAAACTCAACGAACCTG+TGG - chr3_3:61391142-61391161 None:intergenic 45.0%
CTCGCCGATGATATTCACTT+TGG + chr3_3:61391185-61391204 Msa0462380:intron 45.0%
GCCGATGATATTCACTTTGG+AGG + chr3_3:61391188-61391207 Msa0462380:intron 45.0%
AAAATCAATTCCTCGGGGCA+TGG - chr3_3:61391486-61391505 None:intergenic 45.0%
! TGAGGTGTCTGAATCAGTCA+AGG + chr3_3:61391505-61391524 Msa0462380:CDS 45.0%
AGTCAAGGACCTTGTCTGTA+AGG + chr3_3:61391520-61391539 Msa0462380:CDS 45.0%
AAGGACCTTGTCTGTAAGGA+AGG + chr3_3:61391524-61391543 Msa0462380:CDS 45.0%
CATAGCCTTCCTTACAGACA+AGG - chr3_3:61391532-61391551 None:intergenic 45.0%
GAAGGCTATGACCCAACATA+TGG + chr3_3:61391542-61391561 Msa0462380:CDS 45.0%
GAGGTCTAGCACCATATGTT+GGG - chr3_3:61391556-61391575 None:intergenic 45.0%
AGAGGTCTAGCACCATATGT+TGG - chr3_3:61391557-61391576 None:intergenic 45.0%
TTTACAATGGCTCTCCTGAG+AGG - chr3_3:61391575-61391594 None:intergenic 45.0%
CAAGCAATGCTTCAGCCAAT+GGG - chr3_3:61391610-61391629 None:intergenic 45.0%
! CTTGCTGAAAAGTGCAAGGA+AGG + chr3_3:61391626-61391645 Msa0462380:CDS 45.0%
! TACTCAAGGGTGACTTGTGT+CGG - chr3_3:61391729-61391748 None:intergenic 45.0%
ACCATTGTACAGAAGTAGCC+TGG + chr3_3:61391753-61391772 Msa0462380:three_prime_UTR 45.0%
ACCAGGCTACTTCTGTACAA+TGG - chr3_3:61391757-61391776 None:intergenic 45.0%
TTGTACAGAAGTAGCCTGGT+AGG + chr3_3:61391757-61391776 Msa0462380:three_prime_UTR 45.0%
!! TTTAAGAAAATTAATTTATT+TGG + chr3_3:61386199-61386218 Msa0462380:intron 5.0%
!!! ATTTTTTTTGTAATTTTAAT+TGG + chr3_3:61388691-61388710 Msa0462380:intron 5.0%
!!! TTTTTTTTGTAATTTTAATT+GGG + chr3_3:61388692-61388711 Msa0462380:intron 5.0%
!! AATAAAAAAATAAAAATAAG+CGG + chr3_3:61391324-61391343 Msa0462380:intron 5.0%
GAAGTGAGAGTTGGGAACCA+TGG - chr3_3:61385281-61385300 None:intergenic 50.0%
AGCGGTTGGAAGTGAGAGTT+GGG - chr3_3:61385289-61385308 None:intergenic 50.0%
AAGCGGTTGGAAGTGAGAGT+TGG - chr3_3:61385290-61385309 None:intergenic 50.0%
GAGAGAAGGTGGTGAGTATG+CGG - chr3_3:61385369-61385388 None:intergenic 50.0%
AGTTACGGTGAACGTGAACG+TGG - chr3_3:61385486-61385505 None:intergenic 50.0%
ACACCGGTCACGTGAAGTAT+CGG + chr3_3:61386107-61386126 Msa0462380:intron 50.0%
AGGTGTGTTTGTTTCCGCGT+TGG + chr3_3:61386414-61386433 Msa0462380:intron 50.0%
! CTACACTTTGGAGAGGCCAT+TGG + chr3_3:61386465-61386484 Msa0462380:intron 50.0%
GAGCCAGGTTATGTGTCCAA+TGG + chr3_3:61387188-61387207 Msa0462380:CDS 50.0%
GCCAGGTTATGTGTCCAATG+GGG + chr3_3:61387190-61387209 Msa0462380:CDS 50.0%
CCAGGTTATGTGTCCAATGG+GGG + chr3_3:61387191-61387210 Msa0462380:CDS 50.0%
AATCAGCCCAACACTTGCAC+GGG - chr3_3:61387410-61387429 None:intergenic 50.0%
CAATCAGCCCAACACTTGCA+CGG - chr3_3:61387411-61387430 None:intergenic 50.0%
CCAGCTTCACCCAGAAGAAT+TGG - chr3_3:61387505-61387524 None:intergenic 50.0%
CCAATTCTTCTGGGTGAAGC+TGG + chr3_3:61387502-61387521 Msa0462380:CDS 50.0%
TTCTGGGTGAAGCTGGAGTT+GGG + chr3_3:61387509-61387528 Msa0462380:CDS 50.0%
AACAGCTATTGCAGAGGGAC+TGG + chr3_3:61387534-61387553 Msa0462380:CDS 50.0%
CGTGTCATGTCCTTGGATGT+AGG + chr3_3:61387746-61387765 Msa0462380:CDS 50.0%
TATGTGTGGCACACGACAAG+AGG + chr3_3:61387892-61387911 Msa0462380:intron 50.0%
!! CATCGGTTTACACTCCTTGC+AGG + chr3_3:61387927-61387946 Msa0462380:intron 50.0%
ACAACCGGGAGGGGAAATAA+GGG + chr3_3:61387999-61388018 Msa0462380:CDS 50.0%
! AGAACCCTTATTTCCCCTCC+CGG - chr3_3:61388006-61388025 None:intergenic 50.0%
AACTGACCCCTTCCAAGTGA+AGG - chr3_3:61388056-61388075 None:intergenic 50.0%
ACTTGGAAGGGGTCAGTTTC+AGG + chr3_3:61388058-61388077 Msa0462380:CDS 50.0%
! AGGGGTCAGTTTCAGGTGAT+TGG + chr3_3:61388065-61388084 Msa0462380:intron 50.0%
CTCCACTCCATGGAACCAAA+AGG + chr3_3:61388436-61388455 Msa0462380:intron 50.0%
AAGGAGAAGAGGGAGTCACT+TGG - chr3_3:61389102-61389121 None:intergenic 50.0%
CGACAGCTAAAACGGAACGA+AGG + chr3_3:61389354-61389373 Msa0462380:intron 50.0%
TAGCAACAGTTGCTTCCCTC+TGG + chr3_3:61390011-61390030 Msa0462380:CDS 50.0%
GAACTGGAATTCCTGACCAG+AGG - chr3_3:61390030-61390049 None:intergenic 50.0%
GGAACGTGTGATTGGACAAG+AGG + chr3_3:61390105-61390124 Msa0462380:CDS 50.0%
ACGTGTGATTGGACAAGAGG+AGG + chr3_3:61390108-61390127 Msa0462380:CDS 50.0%
! CAGTTTTCCCAACGCCAGTT+GGG - chr3_3:61390222-61390241 None:intergenic 50.0%
! TCAGTTTTCCCAACGCCAGT+TGG - chr3_3:61390223-61390242 None:intergenic 50.0%
! CCCCCAGGTTATGTTGGTTA+TGG + chr3_3:61390517-61390536 Msa0462380:CDS 50.0%
TGGCCATCTTACGGATTCTC+AGG + chr3_3:61390657-61390676 Msa0462380:CDS 50.0%
! GGGTCTAGTGCCATTGCTAA+GGG + chr3_3:61390962-61390981 Msa0462380:CDS 50.0%
! GTTGTGTCGACCCTTAGCAA+TGG - chr3_3:61390975-61390994 None:intergenic 50.0%
AAGGGTCGACACAACTCCAT+AGG + chr3_3:61390980-61390999 Msa0462380:CDS 50.0%
TTCGTCCAGAACTGCTCAAC+AGG + chr3_3:61391080-61391099 Msa0462380:CDS 50.0%
TCATCCCCTTGAAAAGCCAC+AGG + chr3_3:61391123-61391142 Msa0462380:CDS 50.0%
!! CGAACCTGTGGCTTTTCAAG+GGG - chr3_3:61391130-61391149 None:intergenic 50.0%
! GCCACAGGTTCGTTGAGTTT+TGG + chr3_3:61391138-61391157 Msa0462380:intron 50.0%
TGCTGCTGCAAGACGTGAAA+AGG + chr3_3:61391459-61391478 Msa0462380:CDS 50.0%
!! GCCCCGAGGAATTGATTTTG+AGG + chr3_3:61391487-61391506 Msa0462380:CDS 50.0%
! CATATGGTGCTAGACCTCTC+AGG + chr3_3:61391558-61391577 Msa0462380:CDS 50.0%
GCAAGCAATGCTTCAGCCAA+TGG - chr3_3:61391611-61391630 None:intergenic 50.0%
AGGGTTCCGGTGAGTGAATG+CGG - chr3_3:61385316-61385335 None:intergenic 55.0%
AGAAGGTGGTGAGTATGCGG+TGG - chr3_3:61385366-61385385 None:intergenic 55.0%
CGTGATGCTAACGCGCCATT+TGG - chr3_3:61386082-61386101 None:intergenic 55.0%
GGACCGATACTTCACGTGAC+CGG - chr3_3:61386113-61386132 None:intergenic 55.0%
GAACTCCCCCTTGCATACTC+TGG + chr3_3:61386724-61386743 Msa0462380:intron 55.0%
CGGGTCAAACCCAGATCAGT+TGG + chr3_3:61387115-61387134 Msa0462380:CDS 55.0%
CCACAGCTGCCAACTGATCT+GGG - chr3_3:61387127-61387146 None:intergenic 55.0%
GCTAGAGATGGTAGAGAGCC+AGG + chr3_3:61387173-61387192 Msa0462380:CDS 55.0%
CCCCCATTGGACACATAACC+TGG - chr3_3:61387194-61387213 None:intergenic 55.0%
!! TCACAAAGGCGTTCTGGTGC+AGG + chr3_3:61387230-61387249 Msa0462380:CDS 55.0%
TCACTGCCCGTGCAAGTGTT+GGG + chr3_3:61387401-61387420 Msa0462380:CDS 55.0%
CTTCTGGGTGAAGCTGGAGT+TGG + chr3_3:61387508-61387527 Msa0462380:CDS 55.0%
ATGGCTGGGGCAAAAGAGAG+AGG + chr3_3:61387776-61387795 Msa0462380:CDS 55.0%
TTCAATCAGGGACAACCGGG+AGG + chr3_3:61387988-61388007 Msa0462380:CDS 55.0%
TCAATCAGGGACAACCGGGA+GGG + chr3_3:61387989-61388008 Msa0462380:CDS 55.0%
GACAACCGGGAGGGGAAATA+AGG + chr3_3:61387998-61388017 Msa0462380:CDS 55.0%
GGGAGGGGAAATAAGGGTTC+TGG + chr3_3:61388005-61388024 Msa0462380:CDS 55.0%
! AGGATAAGGCTTTGGCACGG+CGG + chr3_3:61389013-61389032 Msa0462380:CDS 55.0%
CACGGCGGTTTCAACCTGTT+TGG + chr3_3:61389028-61389047 Msa0462380:CDS 55.0%
ACAGTTGCTTCCCTCTGGTC+AGG + chr3_3:61390016-61390035 Msa0462380:CDS 55.0%
TCAGCAGTGAGCTGCTGAAC+TGG - chr3_3:61390046-61390065 None:intergenic 55.0%
AGAGATCTCGAGTCGGCCTT+CGG + chr3_3:61390158-61390177 Msa0462380:CDS 55.0%
GGATCTCCCCCAGGTTATGT+TGG + chr3_3:61390511-61390530 Msa0462380:CDS 55.0%
! GGGGTCTAGTGCCATTGCTA+AGG + chr3_3:61390961-61390980 Msa0462380:CDS 55.0%
GTGAGTGAATGCGGCGGAAG+CGG - chr3_3:61385307-61385326 None:intergenic 60.0%
CTTCCGCCGCATTCACTCAC+CGG + chr3_3:61385307-61385326 Msa0462380:CDS 60.0%
GTTCCGGTGAGTGAATGCGG+CGG - chr3_3:61385313-61385332 None:intergenic 60.0%
!! GTGGTTGCGGTGGTGGAAGA+GGG - chr3_3:61385335-61385354 None:intergenic 60.0%
! TGAGTATGCGGTGGCGGTTG+TGG - chr3_3:61385357-61385376 None:intergenic 60.0%
AGGTGGTGAGTATGCGGTGG+CGG - chr3_3:61385363-61385382 None:intergenic 60.0%
CCCAGATCAGTTGGCAGCTG+TGG + chr3_3:61387124-61387143 Msa0462380:CDS 60.0%
GCCACAGCTGCCAACTGATC+TGG - chr3_3:61387128-61387147 None:intergenic 60.0%
CTCACTGCCCGTGCAAGTGT+TGG + chr3_3:61387400-61387419 Msa0462380:CDS 60.0%
CAATCAGGGACAACCGGGAG+GGG + chr3_3:61387990-61388009 Msa0462380:CDS 60.0%
GAGATCTCGAGTCGGCCTTC+GGG + chr3_3:61390159-61390178 Msa0462380:CDS 60.0%
TTCTGTGGCCCAACTGGCGT+TGG + chr3_3:61390211-61390230 Msa0462380:CDS 60.0%
TCTGTGGCCCAACTGGCGTT+GGG + chr3_3:61390212-61390231 Msa0462380:CDS 60.0%
GTGAAAAGGACCATGCCCCG+AGG + chr3_3:61391473-61391492 Msa0462380:CDS 60.0%
GTGAATGCGGCGGAAGCGGT+TGG - chr3_3:61385303-61385322 None:intergenic 65.0%
!! GCGGTGGTGGAAGAGGGTTC+CGG - chr3_3:61385329-61385348 None:intergenic 65.0%
!! GGTGGTTGCGGTGGTGGAAG+AGG - chr3_3:61385336-61385355 None:intergenic 65.0%
GGTTGTGGTGGTTGCGGTGG+TGG - chr3_3:61385342-61385361 None:intergenic 65.0%
! GGTGGCGGTTGTGGTGGTTG+CGG - chr3_3:61385348-61385367 None:intergenic 65.0%
! GTATGCGGTGGCGGTTGTGG+TGG - chr3_3:61385354-61385373 None:intergenic 65.0%
TGGGTCTACCGGGATCCCGA+AGG - chr3_3:61390177-61390196 None:intergenic 65.0%
GGCGGTTGTGGTGGTTGCGG+TGG - chr3_3:61385345-61385364 None:intergenic 70.0%
CGAGTCGGCCTTCGGGATCC+CGG + chr3_3:61390166-61390185 Msa0462380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61385052 61391960 61385052 ID=Msa0462380;Name=Msa0462380
chr3_3 mRNA 61385052 61391960 61385052 ID=Msa0462380-mRNA-1;Parent=Msa0462380;Name=Msa0462380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=199|1|1|1|0.83|0.69|13|192|951
chr3_3 exon 61385052 61385918 61385052 ID=Msa0462380-mRNA-1:exon:12924;Parent=Msa0462380-mRNA-1
chr3_3 exon 61387112 61387272 61387112 ID=Msa0462380-mRNA-1:exon:12925;Parent=Msa0462380-mRNA-1
chr3_3 exon 61387365 61387597 61387365 ID=Msa0462380-mRNA-1:exon:12926;Parent=Msa0462380-mRNA-1
chr3_3 exon 61387740 61387848 61387740 ID=Msa0462380-mRNA-1:exon:12927;Parent=Msa0462380-mRNA-1
chr3_3 exon 61387949 61388079 61387949 ID=Msa0462380-mRNA-1:exon:12928;Parent=Msa0462380-mRNA-1
chr3_3 exon 61388967 61389068 61388967 ID=Msa0462380-mRNA-1:exon:12929;Parent=Msa0462380-mRNA-1
chr3_3 exon 61389432 61389713 61389432 ID=Msa0462380-mRNA-1:exon:12930;Parent=Msa0462380-mRNA-1
chr3_3 exon 61389792 61389892 61389792 ID=Msa0462380-mRNA-1:exon:12931;Parent=Msa0462380-mRNA-1
chr3_3 exon 61389985 61390279 61389985 ID=Msa0462380-mRNA-1:exon:12932;Parent=Msa0462380-mRNA-1
chr3_3 exon 61390445 61390678 61390445 ID=Msa0462380-mRNA-1:exon:12933;Parent=Msa0462380-mRNA-1
chr3_3 exon 61390911 61391144 61390911 ID=Msa0462380-mRNA-1:exon:12934;Parent=Msa0462380-mRNA-1
chr3_3 exon 61391440 61391906 61391440 ID=Msa0462380-mRNA-1:exon:12935;Parent=Msa0462380-mRNA-1
chr3_3 exon 61391930 61391960 61391930 ID=Msa0462380-mRNA-1:exon:12936;Parent=Msa0462380-mRNA-1
chr3_3 five_prime_UTR 61385052 61385250 61385052 ID=Msa0462380-mRNA-1:five_prime_utr;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61385251 61385918 61385251 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61387112 61387272 61387112 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61387365 61387597 61387365 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61387740 61387848 61387740 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61387949 61388079 61387949 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61388967 61389068 61388967 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61389432 61389713 61389432 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61389792 61389892 61389792 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61389985 61390279 61389985 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61390445 61390678 61390445 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61390911 61391144 61390911 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 CDS 61391440 61391745 61391440 ID=Msa0462380-mRNA-1:cds;Parent=Msa0462380-mRNA-1
chr3_3 three_prime_UTR 61391746 61391906 61391746 ID=Msa0462380-mRNA-1:three_prime_utr;Parent=Msa0462380-mRNA-1
chr3_3 three_prime_UTR 61391930 61391960 61391930 ID=Msa0462380-mRNA-1:three_prime_utr;Parent=Msa0462380-mRNA-1
Gene Sequence

>Msa0462380

ATGCAAGTTTCTTCTTCATCACTTAACCCATGGTTCCCAACTCTCACTTCCAACCGCTTCCGCCGCATTCACTCACCGGAACCCTCTTCCACCACCGCAACCACCACAACCGCCACCGCATACTCACCACCTTCTCTCTCGTTTCTTTCATCTCAAAGAAACCGTTCTTCTTCTTCTTCTTCTTCTTTCACCTCACTCACATCAACAAAAACAAAAAGAATAAGAAGAACGTCCACGTTCACGTTCACCGTAACTTCAATATTCGAACGATTCACAGAAAGATCAATAAAATCAATAGTCTACGCCGAAAAAGAAGCAAAATTCTTCAAGAGCGATTTCCTTTACGCACACCATATCATGCTTGGTCTCATAGCTGAAGCTGAAGAGACAAAACGTTCTCAAAACGGTTTTCTTGATTCTGGTGTAGTCACTCTTGAGAAAGCTCGTGATGCTGTTCCTCATCTCAATGATTCAACTAACTACGTTGATGATAATGGAGTGTATGTGTATGAAGATCGACCTGTTCCGTTTTCTTTTGGTACTAAACGTGTTTTTGAAGCTGCTGTTGAGTATTCAAGATCTCTGAACCATAATTTTGTTGATCCTGAACATATTTTCGTTGCTTTGATGAAAGTTGATGATGGAAGTTCTGCTAGAATTCTTTATAGACTCGGGTCAAACCCAGATCAGTTGGCAGCTGTGGCATATTCAAGACTACAAAAAGAGCTGGCTAGAGATGGTAGAGAGCCAGGTTATGTGTCCAATGGGGGACACAACAAATCTATATCACAAAGGCGTTCTGGTGCAGGATCTGCCGCTAAAACAAAAGATAAAAAGAGTGCTCTATCACAATTCTGCGTGGATCTCACTGCCCGTGCAAGTGTTGGGCTGATTGATCCAGTTATTGGCCGAGAAGTTGAAGTTCAAAGAATTATTCAAATACTATGCCGAAAGACAAAAAGCAATCCAATTCTTCTGGGTGAAGCTGGAGTTGGGAAAACAGCTATTGCAGAGGGACTGGCAATTCTTATTTCTCGGGCAGAAGTTGCTCCTTTTCTATTGACAAAACGTGTCATGTCCTTGGATGTAGGACTATTAATGGCTGGGGCAAAAGAGAGAGGAGAGCTAGAGGACCGCGTTACAAAATTAATAAAAGATATAATAGAGTCAGGTGATGTCATTCTTTTCATTGACGAAGTTCACACACTTGTTCAATCAGGGACAACCGGGAGGGGAAATAAGGGTTCTGGCTTTGACATTGCTAATTTGCTTAAACCTTCACTTGGAAGGGGTCAGTTTCAGTGTATTGCATCTACCACTATTGATGAATACAGGCTTCATTTTGAAAAGGATAAGGCTTTGGCACGGCGGTTTCAACCTGTTTGGATTGATGAGCCGAGTGAGGATGATGCAATTAAGATACTTATGGGTGTACGTGAGAAATATGAAGCACACCACAAGTGCAGATATACAGAAGATGCCATAAAGGCTGCAGTTCATTTGTCAGCAAGATACATAGTTGATAGGTATCTACCTGATAAAGCTATTGACCTCATTGATGAAGCAGGAAGTAAAGCTTCTATTGAAGCCTTTAAGATGAAAAAAGAACACGATTATTGCATACTCTCTAAAAGCCCGGATGATTATTGGAGAGAAATTAGAACTGTTCAGTCCACGCTTAAAATGGTGCAGGAGAGCATGCTTAAATATTATGGTGCATCTGGCATTGAGGATACCAGTGAACTCATACTTGACTCATATTTAACTTCTGCAGCATTTGATAATGAGTGTATAGAAGTTAGGCCTGATCATATAGCAACAGTTGCTTCCCTCTGGTCAGGAATTCCAGTTCAGCAGCTCACTGCTGATGAAAGAAGTCTTCTGTTAGATCTGGATAATAAACTAAGGGAACGTGTGATTGGACAAGAGGAGGCTGTTTCTGCCATTTCTAGATCTGTGAAGAGATCTCGAGTCGGCCTTCGGGATCCCGGTAGACCCATAGCAACTTTACTATTCTGTGGCCCAACTGGCGTTGGGAAAACTGAACTAGCAAAGTCTTTGGCTGCATGCTATTTTGGATCGGAAACGGACATGATAAGGTTAGACATGAGTGAATATATGGAACGCCATTCAGTGAGCAAGTTATTAGGATCTCCCCCAGGTTATGTTGGTTATGGAGAAGGGGGCATTTTAACCGAAGCTATTAGAAGAAAACCATTTACTGTGGTTTTGTTTGATGAAATAGAAAAAGCTCATCCAGATATATTTAACATTCTTCTTCAATTAATGGAAGATGGCCATCTTACGGATTCTCAGGGTCGAAGAGTTTCATTTAAAAATGCATTGGTGGTGATGACTTCAAATGTGGGGTCTAGTGCCATTGCTAAGGGTCGACACAACTCCATAGGTTTCTTCATTTCAGATGACAAACCAACATCATATAATGGATTGAAATCGATGGTAATTGAAGAACTGAGGACATATTTTCGTCCAGAACTGCTCAACAGGATAGATGAAGTGGTGGTGTTTCATCCCCTTGAAAAGCCACAGTTGCTCCAAATATTTGATTTGCTGCTGCAAGACGTGAAAAGGACCATGCCCCGAGGAATTGATTTTGAGGTGTCTGAATCAGTCAAGGACCTTGTCTGTAAGGAAGGCTATGACCCAACATATGGTGCTAGACCTCTCAGGAGAGCCATTGTAAACTTAATTGCAAACCCATTGGCTGAAGCATTGCTTGCTGAAAAGTGCAAGGAAGGTGACACTATCTTCATTGATTTGGATGCCAATGGTAACACCCTTGTTATAAATCAGCTTGATCAGACAGTCAACTTATCCGACACAAGTCACCCTTGA
Protein sequence

>Msa0462380

MQVSSSSLNPWFPTLTSNRFRRIHSPEPSSTTATTTTATAYSPPSLSFLSSQRNRSSSSSSSFTSLTSTKTKRIRRTSTFTFTVTSIFERFTERSIKSIVYAEKEAKFFKSDFLYAHHIMLGLIAEAEETKRSQNGFLDSGVVTLEKARDAVPHLNDSTNYVDDNGVYVYEDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHIFVALMKVDDGSSARILYRLGSNPDQLAAVAYSRLQKELARDGREPGYVSNGGHNKSISQRRSGAGSAAKTKDKKSALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCRKTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELEDRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIASTTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGVREKYEAHHKCRYTEDAIKAAVHLSARYIVDRYLPDKAIDLIDEAGSKASIEAFKMKKEHDYCILSKSPDDYWREIRTVQSTLKMVQESMLKYYGASGIEDTSELILDSYLTSAAFDNECIEVRPDHIATVASLWSGIPVQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLRDPGRPIATLLFCGPTGVGKTELAKSLAACYFGSETDMIRLDMSEYMERHSVSKLLGSPPGYVGYGEGGILTEAIRRKPFTVVLFDEIEKAHPDIFNILLQLMEDGHLTDSQGRRVSFKNALVVMTSNVGSSAIAKGRHNSIGFFISDDKPTSYNGLKSMVIEELRTYFRPELLNRIDEVVVFHPLEKPQLLQIFDLLLQDVKRTMPRGIDFEVSESVKDLVCKEGYDPTYGARPLRRAIVNLIANPLAEALLAEKCKEGDTIFIDLDANGNTLVINQLDQTVNLSDTSHP*