Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198270 | XP_013446112.1 | 80.889 | 225 | 29 | 2 | 1 | 225 | 1 | 211 | 1.48e-121 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198270 | sp|Q7XSZ4|HACDA_ORYSJ | 67.111 | 225 | 60 | 2 | 1 | 225 | 1 | 211 | 1.23e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa1198270 | 0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0053480 | Msa1198270 | 0.834283 | 3.277734e-56 | -8.615850e-47 |
| Msa0055590 | Msa1198270 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0070740 | Msa1198270 | 0.820293 | 7.403754e-53 | -8.615850e-47 |
| Msa0617560 | Msa1198270 | -0.813456 | 2.536956e-51 | -8.615850e-47 |
| Msa0618260 | Msa1198270 | 0.814155 | 1.778818e-51 | -8.615850e-47 |
| Msa0626230 | Msa1198270 | 0.805071 | 1.593064e-49 | -8.615850e-47 |
| Msa0635470 | Msa1198270 | 0.817312 | 3.520175e-52 | -8.615850e-47 |
| Msa0648090 | Msa1198270 | 0.817821 | 2.702630e-52 | -8.615850e-47 |
| Msa0657820 | Msa1198270 | 0.819448 | 1.155242e-52 | -8.615850e-47 |
| Msa0660880 | Msa1198270 | -0.807841 | 4.150794e-50 | -8.615850e-47 |
| Msa0674220 | Msa1198270 | 0.800977 | 1.118898e-48 | -8.615850e-47 |
| Msa0691020 | Msa1198270 | 0.800741 | 1.249830e-48 | -8.615850e-47 |
| Msa0719490 | Msa1198270 | -0.803578 | 3.261218e-49 | -8.615850e-47 |
| Msa0749900 | Msa1198270 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0792510 | Msa1198270 | 0.805054 | 1.606165e-49 | -8.615850e-47 |
| Msa0799290 | Msa1198270 | -0.803389 | 3.568958e-49 | -8.615850e-47 |
| Msa0814780 | Msa1198270 | 0.823248 | 1.534322e-53 | -8.615850e-47 |
| Msa0830120 | Msa1198270 | 0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa0830450 | Msa1198270 | 0.810633 | 1.046053e-50 | -8.615850e-47 |
| Msa0837510 | Msa1198270 | -0.800777 | 1.229382e-48 | -8.615850e-47 |
| Msa0837990 | Msa1198270 | 0.810623 | 1.051178e-50 | -8.615850e-47 |
| Msa0840630 | Msa1198270 | 0.801614 | 8.286469e-49 | -8.615850e-47 |
| Msa0164630 | Msa1198270 | 0.814484 | 1.504843e-51 | -8.615850e-47 |
| Msa0181410 | Msa1198270 | 0.803447 | 3.471654e-49 | -8.615850e-47 |
| Msa0403340 | Msa1198270 | 0.855040 | 8.235700e-62 | -8.615850e-47 |
| Msa0405250 | Msa1198270 | -0.803861 | 2.848114e-49 | -8.615850e-47 |
| Msa0453940 | Msa1198270 | -0.828902 | 6.945657e-55 | -8.615850e-47 |
| Msa0467560 | Msa1198270 | 0.803078 | 4.139338e-49 | -8.615850e-47 |
| Msa1008340 | Msa1198270 | 0.802263 | 6.094204e-49 | -8.615850e-47 |
| Msa1008490 | Msa1198270 | 0.817172 | 3.784527e-52 | -8.615850e-47 |
| Msa1009020 | Msa1198270 | 0.802032 | 6.799162e-49 | -8.615850e-47 |
| Msa1018720 | Msa1198270 | 0.819467 | 1.143940e-52 | -8.615850e-47 |
| Msa1033440 | Msa1198270 | -0.810511 | 1.111605e-50 | -8.615850e-47 |
| Msa1036390 | Msa1198270 | 0.802972 | 4.353244e-49 | -8.615850e-47 |
| Msa1040120 | Msa1198270 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa1073110 | Msa1198270 | -0.807119 | 5.905326e-50 | -8.615850e-47 |
| Msa1076630 | Msa1198270 | 0.800252 | 1.572814e-48 | -8.615850e-47 |
| Msa1080280 | Msa1198270 | 0.807717 | 4.409242e-50 | -8.615850e-47 |
| Msa1081710 | Msa1198270 | 0.816158 | 6.386648e-52 | -8.615850e-47 |
| Msa1083410 | Msa1198270 | 0.839861 | 1.229695e-57 | -8.615850e-47 |
| Msa1099030 | Msa1198270 | 0.801925 | 7.152816e-49 | -8.615850e-47 |
| Msa0241580 | Msa1198270 | 0.800737 | 1.252367e-48 | -8.615850e-47 |
| Msa0303860 | Msa1198270 | -0.806870 | 6.668094e-50 | -8.615850e-47 |
| Msa0304740 | Msa1198270 | 0.866087 | 3.682804e-65 | -8.615850e-47 |
| Msa0311620 | Msa1198270 | 0.802770 | 4.791591e-49 | -8.615850e-47 |
| Msa0331590 | Msa1198270 | 0.863359 | 2.634298e-64 | -8.615850e-47 |
| Msa0340530 | Msa1198270 | 0.802938 | 4.422770e-49 | -8.615850e-47 |
| Msa0357090 | Msa1198270 | 0.872476 | 3.089079e-67 | -8.615850e-47 |
| Msa0357100 | Msa1198270 | 0.887387 | 1.492372e-72 | -8.615850e-47 |
| Msa1113210 | Msa1198270 | 0.830692 | 2.544397e-55 | -8.615850e-47 |
| Msa1117280 | Msa1198270 | 0.814075 | 1.852700e-51 | -8.615850e-47 |
| Msa1118120 | Msa1198270 | 0.804277 | 2.333991e-49 | -8.615850e-47 |
| Msa1128160 | Msa1198270 | 0.859428 | 4.164111e-63 | -8.615850e-47 |
| Msa1151970 | Msa1198270 | 0.815714 | 8.022971e-52 | -8.615850e-47 |
| Msa1165360 | Msa1198270 | 0.855980 | 4.382714e-62 | -8.615850e-47 |
| Msa1198270 | Msa1201550 | 0.802639 | 5.099913e-49 | -8.615850e-47 |
| Msa1198270 | Msa1201990 | 0.801802 | 7.583627e-49 | -8.615850e-47 |
| Msa1198270 | Msa1208070 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
| Msa1198270 | Msa1208250 | 0.812803 | 3.528049e-51 | -8.615850e-47 |
| Msa1198270 | Msa1304850 | 0.820346 | 7.199587e-53 | -8.615850e-47 |
| Msa1198270 | Msa1329990 | 0.803213 | 3.881588e-49 | -8.615850e-47 |
| Msa1198270 | Msa1351370 | 0.803789 | 2.947564e-49 | -8.615850e-47 |
| Msa1198270 | Msa1357380 | 0.816385 | 5.681895e-52 | -8.615850e-47 |
| Msa1198270 | Msa1363560 | 0.802803 | 4.717069e-49 | -8.615850e-47 |
| Msa1198270 | Msa1366700 | 0.802309 | 5.965456e-49 | -8.615850e-47 |
| Msa1198270 | Msa1373950 | 0.810902 | 9.150716e-51 | -8.615850e-47 |
| Msa1198270 | Msa1391600 | 0.802428 | 5.635715e-49 | -8.615850e-47 |
| Msa1198270 | Msa1437650 | 0.808696 | 2.728551e-50 | -8.615850e-47 |
| Msa0548720 | Msa1198270 | 0.809929 | 1.483973e-50 | -8.615850e-47 |
| Msa0569290 | Msa1198270 | 0.830666 | 2.583170e-55 | -8.615850e-47 |
| Msa0596100 | Msa1198270 | 0.801458 | 8.919614e-49 | -8.615850e-47 |
| Msa0887000 | Msa1198270 | 0.815075 | 1.113251e-51 | -8.615850e-47 |
| Msa0946120 | Msa1198270 | 0.860467 | 2.024583e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198270 | MtrunA17_Chr8g0367561 | 80.889 | 225 | 29 | 2 | 1 | 225 | 1 | 211 | 1.36e-125 | 354 |
| Msa1198270 | MtrunA17_Chr4g0030011 | 29.536 | 237 | 129 | 7 | 8 | 233 | 5 | 214 | 8.78e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198270 | AT5G10480.3 | 62.232 | 233 | 83 | 2 | 1 | 233 | 1 | 228 | 8.27e-98 | 285 |
| Msa1198270 | AT5G10480.1 | 61.803 | 233 | 75 | 2 | 1 | 233 | 1 | 219 | 3.62e-97 | 283 |
| Msa1198270 | AT5G10480.2 | 63.285 | 207 | 62 | 2 | 27 | 233 | 2 | 194 | 7.35e-88 | 258 |
| Msa1198270 | AT5G59770.1 | 30.851 | 188 | 102 | 4 | 5 | 185 | 1 | 167 | 9.69e-16 | 73.9 |
Find 69 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATTCTTCATGGTTTATT+TGG | 0.192712 | 8_1:+49608457 | Msa1198270:intron |
| TATTGCCTTGCCATTCATTA+AGG | 0.268250 | 8_1:+49609737 | Msa1198270:CDS |
| CTTATCTTGTTAATGTATCT+AGG | 0.272439 | 8_1:+49610624 | Msa1198270:three_prime_UTR |
| GTCATGTCCTGGTTTGAAAT+TGG | 0.274699 | 8_1:+49610570 | Msa1198270:three_prime_UTR |
| TCTTATGATTGAATTATATA+GGG | 0.300902 | 8_1:-49607873 | None:intergenic |
| TTCGGACTTAAAGAGGCTTT+TGG | 0.313571 | 8_1:+49609532 | Msa1198270:CDS |
| ATCTTATGATTGAATTATAT+AGG | 0.322706 | 8_1:-49607874 | None:intergenic |
| GGGCAACATGGGATTGGAAT+TGG | 0.335102 | 8_1:-49607853 | None:intergenic |
| TCAAACTGCTGCTGTATTAG+AGG | 0.339447 | 8_1:+49608276 | Msa1198270:CDS |
| GGCAACATGGGATTGGAATT+GGG | 0.346803 | 8_1:-49607852 | None:intergenic |
| TGAGGCAATGTTGCTGATAT+TGG | 0.352785 | 8_1:-49608579 | None:intergenic |
| ATTATTCGCTATTCTTTCTT+CGG | 0.357374 | 8_1:+49609514 | Msa1198270:CDS |
| AATGGAACGCTAAGCCAAAA+AGG | 0.358667 | 8_1:-49609355 | None:intergenic |
| TTTATCTTGTTAATGTATCT+AGG | 0.362966 | 8_1:+49610658 | Msa1198270:three_prime_UTR |
| TCGTTGGCAATCTACGTTCC+AGG | 0.380670 | 8_1:+49610316 | Msa1198270:CDS |
| ATCATCACTTCCTTCTTCAA+TGG | 0.382220 | 8_1:+49607993 | Msa1198270:exon |
| CTGTGTATTAATTAATTAAG+AGG | 0.383580 | 8_1:-49607802 | None:intergenic |
| AATCATACATTAACAAGATA+AGG | 0.390105 | 8_1:-49610691 | None:intergenic |
| ATGGTGTTATAGATTCTTCA+TGG | 0.397861 | 8_1:+49608448 | Msa1198270:intron |
| TTTGAAGACATTGAATGAAA+TGG | 0.400918 | 8_1:+49608207 | Msa1198270:CDS |
| AAAATCTTTACCTTAATGAA+TGG | 0.403114 | 8_1:-49609747 | None:intergenic |
| AATGAAGAGTTCCATGTATT+CGG | 0.405471 | 8_1:-49610268 | None:intergenic |
| ACACAATTTCAAACACGAAA+TGG | 0.408860 | 8_1:-49609309 | None:intergenic |
| TTCGTGTTTGAAATTGTGTA+TGG | 0.413532 | 8_1:+49609313 | Msa1198270:CDS |
| AATTAATTAATTAATTTGAA+GGG | 0.416263 | 8_1:-49607913 | None:intergenic |
| ACAGTTGTGTTGTTGTTAGT+TGG | 0.417758 | 8_1:+49607821 | Msa1198270:five_prime_UTR |
| CAGTTGTGTTGTTGTTAGTT+GGG | 0.423971 | 8_1:+49607822 | Msa1198270:five_prime_UTR |
| CATCCTGATGCAATACTTCT+CGG | 0.424986 | 8_1:-49610245 | None:intergenic |
| TAATTAATTAATTAATTTGA+AGG | 0.428059 | 8_1:-49607914 | None:intergenic |
| TTCTTTCTTCGGACTTAAAG+AGG | 0.440816 | 8_1:+49609525 | Msa1198270:CDS |
| ACACGAAATGGTAAAACAAA+TGG | 0.444612 | 8_1:-49609297 | None:intergenic |
| TAACTAAGCAGCCTTTGCTT+TGG | 0.445467 | 8_1:-49610489 | None:intergenic |
| TTGAAGACATTGAATGAAAT+GGG | 0.454135 | 8_1:+49608208 | Msa1198270:CDS |
| TTATCTTGTTAATGTATCTA+GGG | 0.470802 | 8_1:+49610625 | Msa1198270:three_prime_UTR |
| TATATAGGGCAACATGGGAT+TGG | 0.471685 | 8_1:-49607859 | None:intergenic |
| TCAGCAACATTGCCTCAGAT+TGG | 0.480235 | 8_1:+49608585 | Msa1198270:CDS |
| CGGTAAAGTTGTAAAGAGAA+AGG | 0.488047 | 8_1:-49608047 | None:intergenic |
| CATTGCCTCAGATTGGTTCA+AGG | 0.488154 | 8_1:+49608592 | Msa1198270:CDS |
| AACTTACCATCCAAATAAAA+CGG | 0.489799 | 8_1:-49608067 | None:intergenic |
| GGATCCGCATGTATGTATCT+AGG | 0.494822 | 8_1:+49610591 | Msa1198270:three_prime_UTR |
| TTACCTCGCAATTGTTTCGT+TGG | 0.501775 | 8_1:+49610300 | Msa1198270:CDS |
| ACTTCACTGCTTATGCCTGT+TGG | 0.506216 | 8_1:-49609702 | None:intergenic |
| GCATCAGGATGCCGAATACA+TGG | 0.506249 | 8_1:+49610257 | Msa1198270:CDS |
| CATCCGAGAAGTATTGCATC+AGG | 0.510272 | 8_1:+49610242 | Msa1198270:CDS |
| CTTTATAGCATAAAATTGAA+AGG | 0.518031 | 8_1:-49610753 | None:intergenic |
| ATTAATTAATTAATTTGAAG+GGG | 0.520945 | 8_1:-49607912 | None:intergenic |
| GCAACATGGGATTGGAATTG+GGG | 0.525465 | 8_1:-49607851 | None:intergenic |
| AGCAGCCTTTGCTTTGGCGA+GGG | 0.526129 | 8_1:-49610483 | None:intergenic |
| TATATATACATGTCATGTCC+TGG | 0.528930 | 8_1:+49610559 | Msa1198270:three_prime_UTR |
| CTAAGCCACAAAAGCCATGA+TGG | 0.533657 | 8_1:-49609562 | None:intergenic |
| ACAGAAGCAGCCATTGAAGA+AGG | 0.539400 | 8_1:-49608003 | None:intergenic |
| CTTTACCTTAATGAATGGCA+AGG | 0.547508 | 8_1:-49609742 | None:intergenic |
| ATAGTATAGTAGAGGAGAAG+TGG | 0.548379 | 8_1:-49607756 | None:intergenic |
| ACAGGCATAAGCAGTGAAGT+TGG | 0.550134 | 8_1:+49609705 | Msa1198270:CDS |
| TAAGCCACAAAAGCCATGAT+GGG | 0.551078 | 8_1:-49609561 | None:intergenic |
| TGTGTATTAATTAATTAAGA+GGG | 0.556530 | 8_1:-49607801 | None:intergenic |
| TGAATTATATAGGGCAACAT+GGG | 0.573200 | 8_1:-49607864 | None:intergenic |
| AAGCAGCCTTTGCTTTGGCG+AGG | 0.584431 | 8_1:-49610484 | None:intergenic |
| TTGAATTATATAGGGCAACA+TGG | 0.585242 | 8_1:-49607865 | None:intergenic |
| TAAAGTACATAGTATAGTAG+AGG | 0.599432 | 8_1:-49607764 | None:intergenic |
| GAAAGCCCTCGCCAAAGCAA+AGG | 0.599576 | 8_1:+49610478 | Msa1198270:CDS |
| TGCGGATCCAATTTCAAACC+AGG | 0.627482 | 8_1:-49610577 | None:intergenic |
| AACAGCCTTGAACCAATCTG+AGG | 0.659969 | 8_1:-49608597 | None:intergenic |
| TCTTCCTAGATACATACATG+CGG | 0.664295 | 8_1:-49610595 | None:intergenic |
| AGCATGTACGAGTACAAGTG+CGG | 0.671048 | 8_1:-49610443 | None:intergenic |
| AAGCCACAAAAGCCATGATG+GGG | 0.673030 | 8_1:-49609560 | None:intergenic |
| TGTATGATTAAAATACAACA+TGG | 0.709861 | 8_1:+49610705 | Msa1198270:three_prime_UTR |
| TTGCCAACGAAACAATTGCG+AGG | 0.715714 | 8_1:-49610303 | None:intergenic |
| ACTCGTACATGCTTGCACAG+AGG | 0.776747 | 8_1:+49610453 | Msa1198270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTAATTAATTTGAAG+GGG | - | chr8_1:49607915-49607934 | None:intergenic | 10.0% |
| !! | TGTGTATTAATTAATTAAGA+GGG | - | chr8_1:49607804-49607823 | None:intergenic | 15.0% |
| !! | TCTTATGATTGAATTATATA+GGG | - | chr8_1:49607876-49607895 | None:intergenic | 15.0% |
| !! | ATCTTATGATTGAATTATAT+AGG | - | chr8_1:49607877-49607896 | None:intergenic | 15.0% |
| !! | GCATAAATTTGAAAAAAAAA+TGG | - | chr8_1:49608164-49608183 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCAAATTTATGC+AGG | + | chr8_1:49608164-49608183 | Msa1198270:intron | 15.0% |
| !! | AAAAAACAAAAATCAGAAAA+CGG | - | chr8_1:49608533-49608552 | None:intergenic | 15.0% |
| !!! | TTTCACTAATTTATGTATTT+TGG | + | chr8_1:49608672-49608691 | Msa1198270:intron | 15.0% |
| !! | TGTAAATTAGAAGAATTAAA+GGG | - | chr8_1:49608698-49608717 | None:intergenic | 15.0% |
| !! | TTGTAAATTAGAAGAATTAA+AGG | - | chr8_1:49608699-49608718 | None:intergenic | 15.0% |
| !! | AATTCTTCTAATTTACAATT+TGG | + | chr8_1:49608701-49608720 | Msa1198270:intron | 15.0% |
| !! | AAATTGCAAATTTGAATTTA+GGG | - | chr8_1:49608729-49608748 | None:intergenic | 15.0% |
| !! | AAAATTGCAAATTTGAATTT+AGG | - | chr8_1:49608730-49608749 | None:intergenic | 15.0% |
| !!! | TAAATTCAAATTTGCAATTT+TGG | + | chr8_1:49608729-49608748 | Msa1198270:intron | 15.0% |
| !!! | TTTTGATAATTTAGTAATTG+AGG | + | chr8_1:49608806-49608825 | Msa1198270:intron | 15.0% |
| !! | CTGTGTATTAATTAATTAAG+AGG | - | chr8_1:49607805-49607824 | None:intergenic | 20.0% |
| !! | TTCAGAGAAAATAAACAAAA+GGG | - | chr8_1:49608345-49608364 | None:intergenic | 20.0% |
| !! | ATTCAGAGAAAATAAACAAA+AGG | - | chr8_1:49608346-49608365 | None:intergenic | 20.0% |
| !!! | AATTTCTTCATTGTGTTTTT+TGG | + | chr8_1:49608409-49608428 | Msa1198270:intron | 20.0% |
| !!! | ATTTCTTCATTGTGTTTTTT+GGG | + | chr8_1:49608410-49608429 | Msa1198270:intron | 20.0% |
| !!! | TTTGTTTTTTGAATTGATGA+AGG | + | chr8_1:49608543-49608562 | Msa1198270:intron | 20.0% |
| !!! | TTGTTTTTTGAATTGATGAA+GGG | + | chr8_1:49608544-49608563 | Msa1198270:intron | 20.0% |
| !! | AATTGCAAATTTGAATTTAG+GGG | - | chr8_1:49608728-49608747 | None:intergenic | 20.0% |
| !! | AATCAGACAATTTGAAAAAT+GGG | - | chr8_1:49608757-49608776 | None:intergenic | 20.0% |
| !! | AAATCAGACAATTTGAAAAA+TGG | - | chr8_1:49608758-49608777 | None:intergenic | 20.0% |
| !!! | TGTTTCTAAATCTATGATTT+CGG | - | chr8_1:49608846-49608865 | None:intergenic | 20.0% |
| !! | AATCATAGATTTAGAAACAA+AGG | + | chr8_1:49608847-49608866 | Msa1198270:intron | 20.0% |
| !! | ATCATAGATTTAGAAACAAA+GGG | + | chr8_1:49608848-49608867 | Msa1198270:intron | 20.0% |
| !!! | TTTTGTATCATTCACAATTT+TGG | - | chr8_1:49608875-49608894 | None:intergenic | 20.0% |
| !! | AATTGTGAATGATACAAAAT+AGG | + | chr8_1:49608876-49608895 | Msa1198270:intron | 20.0% |
| !! | AAAATCTTTACCTTAATGAA+TGG | - | chr8_1:49609750-49609769 | None:intergenic | 20.0% |
| !!! | ATCTTTAAAATATCTAAACC+TGG | + | chr8_1:49610064-49610083 | Msa1198270:intron | 20.0% |
| !! | GATAAACAAGATTATCTAAT+AGG | - | chr8_1:49610180-49610199 | None:intergenic | 20.0% |
| !!! | ATTAGATAATCTTGTTTATC+AGG | + | chr8_1:49610180-49610199 | Msa1198270:intron | 20.0% |
| !!! | ATTGATTTTTTATCAAACAC+AGG | + | chr8_1:49610531-49610550 | Msa1198270:three_prime_UTR | 20.0% |
| !! | TTATCTTGTTAATGTATCTA+GGG | + | chr8_1:49610625-49610644 | Msa1198270:three_prime_UTR | 20.0% |
| !! | TTTATCTTGTTAATGTATCT+AGG | + | chr8_1:49610658-49610677 | Msa1198270:three_prime_UTR | 20.0% |
| !! | AATCATACATTAACAAGATA+AGG | - | chr8_1:49610694-49610713 | None:intergenic | 20.0% |
| !! | TGTATGATTAAAATACAACA+TGG | + | chr8_1:49610705-49610724 | Msa1198270:three_prime_UTR | 20.0% |
| !! | CTTTATAGCATAAAATTGAA+AGG | - | chr8_1:49610756-49610775 | None:intergenic | 20.0% |
| ! | TAAAGTACATAGTATAGTAG+AGG | - | chr8_1:49607767-49607786 | None:intergenic | 25.0% |
| !!! | TACAACTTTACCGTTTTATT+TGG | + | chr8_1:49608057-49608076 | Msa1198270:CDS | 25.0% |
| ! | AACTTACCATCCAAATAAAA+CGG | - | chr8_1:49608070-49608089 | None:intergenic | 25.0% |
| ! | TTTGAAGACATTGAATGAAA+TGG | + | chr8_1:49608207-49608226 | Msa1198270:CDS | 25.0% |
| ! | TTGAAGACATTGAATGAAAT+GGG | + | chr8_1:49608208-49608227 | Msa1198270:CDS | 25.0% |
| !!! | AATGTCTTCGAATTTTTTTG+TGG | + | chr8_1:49608363-49608382 | Msa1198270:intron | 25.0% |
| !!! | ATGTCTTCGAATTTTTTTGT+GGG | + | chr8_1:49608364-49608383 | Msa1198270:intron | 25.0% |
| ! | TAGATTCTTCATGGTTTATT+TGG | + | chr8_1:49608457-49608476 | Msa1198270:intron | 25.0% |
| !! | AACATAAAGCATTTAAGCAA+AGG | - | chr8_1:49608491-49608510 | None:intergenic | 25.0% |
| ! | ATCAGACAATTTGAAAAATG+GGG | - | chr8_1:49608756-49608775 | None:intergenic | 25.0% |
| ! | TCATAGATTTAGAAACAAAG+GGG | + | chr8_1:49608849-49608868 | Msa1198270:intron | 25.0% |
| ! | ATCGAACAAAACAAACAAAT+TGG | - | chr8_1:49609122-49609141 | None:intergenic | 25.0% |
| !! | CTTTCTTTTCAACTTTTCTT+GGG | - | chr8_1:49609221-49609240 | None:intergenic | 25.0% |
| !! | ACTTTCTTTTCAACTTTTCT+TGG | - | chr8_1:49609222-49609241 | None:intergenic | 25.0% |
| !! | ACTATAATGCTAAACCTTTT+TGG | + | chr8_1:49609341-49609360 | Msa1198270:CDS | 25.0% |
| ! | GAAAAATTACAGACCAAAAA+TGG | - | chr8_1:49609376-49609395 | None:intergenic | 25.0% |
| ! | ATTATTCGCTATTCTTTCTT+CGG | + | chr8_1:49609514-49609533 | Msa1198270:CDS | 25.0% |
| !!! | TTTTTAGTTTTGTATCCAAC+AGG | + | chr8_1:49609687-49609706 | Msa1198270:CDS | 25.0% |
| ! | GAACATCAAAATTACCTTTA+AGG | + | chr8_1:49609770-49609789 | Msa1198270:intron | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr8_1:49609894-49609913 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+TGG | - | chr8_1:49609929-49609948 | None:intergenic | 25.0% |
| ! | TTAAAGATTCTAAACCTGTT+TGG | - | chr8_1:49610052-49610071 | None:intergenic | 25.0% |
| !!! | TGTGTTGTTTATAATCAGAA+AGG | + | chr8_1:49610090-49610109 | Msa1198270:intron | 25.0% |
| ! | CAAATCAATAACATGAAATC+AGG | - | chr8_1:49610208-49610227 | None:intergenic | 25.0% |
| !! | CTGATTTCATGTTATTGATT+TGG | + | chr8_1:49610206-49610225 | Msa1198270:intron | 25.0% |
| ! | AATGATGAAATTCAATCAGT+TGG | - | chr8_1:49610410-49610429 | None:intergenic | 25.0% |
| ! | CTTATCTTGTTAATGTATCT+AGG | + | chr8_1:49610624-49610643 | Msa1198270:three_prime_UTR | 25.0% |
| TGAATTATATAGGGCAACAT+GGG | - | chr8_1:49607867-49607886 | None:intergenic | 30.0% | |
| TTGAATTATATAGGGCAACA+TGG | - | chr8_1:49607868-49607887 | None:intergenic | 30.0% | |
| !!! | ACTTTACCGTTTTATTTGGA+TGG | + | chr8_1:49608061-49608080 | Msa1198270:CDS | 30.0% |
| !!! | TTCATTGTGTTTTTTGGGTA+TGG | + | chr8_1:49608415-49608434 | Msa1198270:intron | 30.0% |
| !! | ATGGTGTTATAGATTCTTCA+TGG | + | chr8_1:49608448-49608467 | Msa1198270:intron | 30.0% |
| TAGTAATTGAGGACCAAAAT+TGG | + | chr8_1:49608817-49608836 | Msa1198270:intron | 30.0% | |
| AGTAATTGAGGACCAAAATT+GGG | + | chr8_1:49608818-49608837 | Msa1198270:intron | 30.0% | |
| TGTGAATGATACAAAATAGG+AGG | + | chr8_1:49608879-49608898 | Msa1198270:intron | 30.0% | |
| ATGACACAGCAGAAAATAAA+AGG | - | chr8_1:49608923-49608942 | None:intergenic | 30.0% | |
| ATATCATGAAAAACTTGCCT+CGG | - | chr8_1:49609054-49609073 | None:intergenic | 30.0% | |
| AAATTGGAGTAACATGTAGA+TGG | - | chr8_1:49609106-49609125 | None:intergenic | 30.0% | |
| GCAAGCTGCAATAAAAATAT+TGG | - | chr8_1:49609271-49609290 | None:intergenic | 30.0% | |
| ACACGAAATGGTAAAACAAA+TGG | - | chr8_1:49609300-49609319 | None:intergenic | 30.0% | |
| ACACAATTTCAAACACGAAA+TGG | - | chr8_1:49609312-49609331 | None:intergenic | 30.0% | |
| ! | TTCGTGTTTGAAATTGTGTA+TGG | + | chr8_1:49609313-49609332 | Msa1198270:CDS | 30.0% |
| AAAATGTGCTATATCTGCAA+AGG | - | chr8_1:49609671-49609690 | None:intergenic | 30.0% | |
| ! | ACTTTGGATTGTCTCATTTT+AGG | + | chr8_1:49609802-49609821 | Msa1198270:intron | 30.0% |
| !!! | TCTCATTTTAGGTTATCTAC+TGG | + | chr8_1:49609813-49609832 | Msa1198270:intron | 30.0% |
| !! | AAGCTATTTTGGAGAGTTTA+TGG | - | chr8_1:49609918-49609937 | None:intergenic | 30.0% |
| ATTTAGCTGTTAATCCAAAC+AGG | + | chr8_1:49610035-49610054 | Msa1198270:intron | 30.0% | |
| ATTATAAACAACACATCACC+AGG | - | chr8_1:49610085-49610104 | None:intergenic | 30.0% | |
| ! | ATAATCAGAAAGGTGCAATA+AGG | + | chr8_1:49610100-49610119 | Msa1198270:intron | 30.0% |
| AGCTAATCATAAATCAGTCA+TGG | - | chr8_1:49610145-49610164 | None:intergenic | 30.0% | |
| !!! | ATTGATTTGGTATGTTTTCC+AGG | + | chr8_1:49610219-49610238 | Msa1198270:intron | 30.0% |
| AATGAAGAGTTCCATGTATT+CGG | - | chr8_1:49610271-49610290 | None:intergenic | 30.0% | |
| GAAAATAAACGCTGGAAATA+GGG | - | chr8_1:49610374-49610393 | None:intergenic | 30.0% | |
| TGAATTTCATCATTCTATGC+AGG | + | chr8_1:49610416-49610435 | Msa1198270:intron | 30.0% | |
| TATATATACATGTCATGTCC+TGG | + | chr8_1:49610559-49610578 | Msa1198270:three_prime_UTR | 30.0% | |
| ! | AACTTTTGTGTCTCATTAAG+AGG | + | chr8_1:49610791-49610810 | Msa1198270:three_prime_UTR | 30.0% |
| ATAGTATAGTAGAGGAGAAG+TGG | - | chr8_1:49607759-49607778 | None:intergenic | 35.0% | |
| ! | ACAGTTGTGTTGTTGTTAGT+TGG | + | chr8_1:49607821-49607840 | Msa1198270:five_prime_UTR | 35.0% |
| ! | CAGTTGTGTTGTTGTTAGTT+GGG | + | chr8_1:49607822-49607841 | Msa1198270:five_prime_UTR | 35.0% |
| ATCATCACTTCCTTCTTCAA+TGG | + | chr8_1:49607993-49608012 | Msa1198270:exon | 35.0% | |
| ! | GAAAGGTAGAGTCTTTTCAT+AGG | - | chr8_1:49608033-49608052 | None:intergenic | 35.0% |
| CGGTAAAGTTGTAAAGAGAA+AGG | - | chr8_1:49608050-49608069 | None:intergenic | 35.0% | |
| !!! | TTCAAGGCTGTTTTTGGTAT+GGG | + | chr8_1:49608608-49608627 | Msa1198270:CDS | 35.0% |
| TTGAAATTTGTGTTCACCTC+AGG | - | chr8_1:49608651-49608670 | None:intergenic | 35.0% | |
| GTAATTGAGGACCAAAATTG+GGG | + | chr8_1:49608819-49608838 | Msa1198270:intron | 35.0% | |
| !! | TCTGCTGTGTCATTTAATTC+AGG | + | chr8_1:49608930-49608949 | Msa1198270:intron | 35.0% |
| TACTATTACGTAACAGACAC+TGG | - | chr8_1:49609167-49609186 | None:intergenic | 35.0% | |
| ! | AACTTTTCTTGGGAAAACGT+AGG | - | chr8_1:49609211-49609230 | None:intergenic | 35.0% |
| TTACGACATTCAAGGATTGT+TGG | - | chr8_1:49609407-49609426 | None:intergenic | 35.0% | |
| CTCATAGTTTACGACATTCA+AGG | - | chr8_1:49609415-49609434 | None:intergenic | 35.0% | |
| TTCTTTCTTCGGACTTAAAG+AGG | + | chr8_1:49609525-49609544 | Msa1198270:CDS | 35.0% | |
| TATTGCCTTGCCATTCATTA+AGG | + | chr8_1:49609737-49609756 | Msa1198270:CDS | 35.0% | |
| CTTTACCTTAATGAATGGCA+AGG | - | chr8_1:49609745-49609764 | None:intergenic | 35.0% | |
| AAAGTTCAAACAGGCCTTAA+AGG | - | chr8_1:49609787-49609806 | None:intergenic | 35.0% | |
| ! | TTTAAGGCCTGTTTGAACTT+TGG | + | chr8_1:49609786-49609805 | Msa1198270:intron | 35.0% |
| AGACAATCCAAAGTTCAAAC+AGG | - | chr8_1:49609796-49609815 | None:intergenic | 35.0% | |
| GGAAAATAAACGCTGGAAAT+AGG | - | chr8_1:49610375-49610394 | None:intergenic | 35.0% | |
| AATCAGTTGGAGCATAATGT+CGG | - | chr8_1:49610397-49610416 | None:intergenic | 35.0% | |
| TCTTCCTAGATACATACATG+CGG | - | chr8_1:49610598-49610617 | None:intergenic | 35.0% | |
| TATATAGGGCAACATGGGAT+TGG | - | chr8_1:49607862-49607881 | None:intergenic | 40.0% | |
| GCAGTTTGAGCAAAAAGCAA+GGG | - | chr8_1:49608265-49608284 | None:intergenic | 40.0% | |
| AGCAGTTTGAGCAAAAAGCA+AGG | - | chr8_1:49608266-49608285 | None:intergenic | 40.0% | |
| TCAAACTGCTGCTGTATTAG+AGG | + | chr8_1:49608276-49608295 | Msa1198270:CDS | 40.0% | |
| !! | GCTGCTGTATTAGAGGTATT+TGG | + | chr8_1:49608283-49608302 | Msa1198270:intron | 40.0% |
| TGAGGCAATGTTGCTGATAT+TGG | - | chr8_1:49608582-49608601 | None:intergenic | 40.0% | |
| !! | GATTGGTTCAAGGCTGTTTT+TGG | + | chr8_1:49608602-49608621 | Msa1198270:CDS | 40.0% |
| !!! | GTTCAAGGCTGTTTTTGGTA+TGG | + | chr8_1:49608607-49608626 | Msa1198270:CDS | 40.0% |
| !!! | TCAAGGCTGTTTTTGGTATG+GGG | + | chr8_1:49608609-49608628 | Msa1198270:CDS | 40.0% |
| ! | ATGATTTCGGTCCCCAATTT+TGG | - | chr8_1:49608833-49608852 | None:intergenic | 40.0% |
| GATAGACCAGCTGATAAGTA+GGG | - | chr8_1:49609030-49609049 | None:intergenic | 40.0% | |
| TGATAGACCAGCTGATAAGT+AGG | - | chr8_1:49609031-49609050 | None:intergenic | 40.0% | |
| AATGGAACGCTAAGCCAAAA+AGG | - | chr8_1:49609358-49609377 | None:intergenic | 40.0% | |
| ! | TTGGCTTAGCGTTCCATTTT+TGG | + | chr8_1:49609360-49609379 | Msa1198270:CDS | 40.0% |
| ! | TTCGGACTTAAAGAGGCTTT+TGG | + | chr8_1:49609532-49609551 | Msa1198270:CDS | 40.0% |
| ! | CTTTTGGATTTTCCCCATCA+TGG | + | chr8_1:49609548-49609567 | Msa1198270:CDS | 40.0% |
| TAAGCCACAAAAGCCATGAT+GGG | - | chr8_1:49609564-49609583 | None:intergenic | 40.0% | |
| CATCCTGATGCAATACTTCT+CGG | - | chr8_1:49610248-49610267 | None:intergenic | 40.0% | |
| TTACCTCGCAATTGTTTCGT+TGG | + | chr8_1:49610300-49610319 | Msa1198270:CDS | 40.0% | |
| AATGTCGGGAAAATAAACGC+TGG | - | chr8_1:49610382-49610401 | None:intergenic | 40.0% | |
| ATCAGTTGGAGCATAATGTC+GGG | - | chr8_1:49610396-49610415 | None:intergenic | 40.0% | |
| TAACTAAGCAGCCTTTGCTT+TGG | - | chr8_1:49610492-49610511 | None:intergenic | 40.0% | |
| ! | GTCATGTCCTGGTTTGAAAT+TGG | + | chr8_1:49610570-49610589 | Msa1198270:three_prime_UTR | 40.0% |
| GCAACATGGGATTGGAATTG+GGG | - | chr8_1:49607854-49607873 | None:intergenic | 45.0% | |
| GGCAACATGGGATTGGAATT+GGG | - | chr8_1:49607855-49607874 | None:intergenic | 45.0% | |
| ACAGAAGCAGCCATTGAAGA+AGG | - | chr8_1:49608006-49608025 | None:intergenic | 45.0% | |
| TCAGCAACATTGCCTCAGAT+TGG | + | chr8_1:49608585-49608604 | Msa1198270:CDS | 45.0% | |
| ! | CATTGCCTCAGATTGGTTCA+AGG | + | chr8_1:49608592-49608611 | Msa1198270:CDS | 45.0% |
| AACAGCCTTGAACCAATCTG+AGG | - | chr8_1:49608600-49608619 | None:intergenic | 45.0% | |
| !! | TTTTGGTATGGGGCATCTTG+TGG | + | chr8_1:49608619-49608638 | Msa1198270:CDS | 45.0% |
| ! | CATCTTGTGGAGTTTTCCTG+AGG | + | chr8_1:49608632-49608651 | Msa1198270:CDS | 45.0% |
| TCCATCACATGTGCATTGTG+AGG | + | chr8_1:49608778-49608797 | Msa1198270:intron | 45.0% | |
| ! | TTTCCCCATCATGGCTTTTG+TGG | + | chr8_1:49609557-49609576 | Msa1198270:CDS | 45.0% |
| AAGCCACAAAAGCCATGATG+GGG | - | chr8_1:49609563-49609582 | None:intergenic | 45.0% | |
| CTAAGCCACAAAAGCCATGA+TGG | - | chr8_1:49609565-49609584 | None:intergenic | 45.0% | |
| ! | CATCATGGCTTTTGTGGCTT+AGG | + | chr8_1:49609563-49609582 | Msa1198270:CDS | 45.0% |
| ACTTCACTGCTTATGCCTGT+TGG | - | chr8_1:49609705-49609724 | None:intergenic | 45.0% | |
| ACAGGCATAAGCAGTGAAGT+TGG | + | chr8_1:49609705-49609724 | Msa1198270:CDS | 45.0% | |
| !! | CATCCGAGAAGTATTGCATC+AGG | + | chr8_1:49610242-49610261 | Msa1198270:CDS | 45.0% |
| TTGCCAACGAAACAATTGCG+AGG | - | chr8_1:49610306-49610325 | None:intergenic | 45.0% | |
| AAAAATGCTTCGTGCATGCC+TGG | - | chr8_1:49610337-49610356 | None:intergenic | 45.0% | |
| AGCATGTACGAGTACAAGTG+CGG | - | chr8_1:49610446-49610465 | None:intergenic | 45.0% | |
| TGCGGATCCAATTTCAAACC+AGG | - | chr8_1:49610580-49610599 | None:intergenic | 45.0% | |
| GGATCCGCATGTATGTATCT+AGG | + | chr8_1:49610591-49610610 | Msa1198270:three_prime_UTR | 45.0% | |
| !!! | AATTAATTAATTAATTTGAA+GGG | - | chr8_1:49607916-49607935 | None:intergenic | 5.0% |
| !!! | TAATTAATTAATTAATTTGA+AGG | - | chr8_1:49607917-49607936 | None:intergenic | 5.0% |
| !!! | TTAATTTTATAATTTGTTAT+AGG | + | chr8_1:49609974-49609993 | Msa1198270:intron | 5.0% |
| GGGCAACATGGGATTGGAAT+TGG | - | chr8_1:49607856-49607875 | None:intergenic | 50.0% | |
| TGGGTATGGCGTTGTATGCA+TGG | + | chr8_1:49608429-49608448 | Msa1198270:intron | 50.0% | |
| GCCTCACAATGCACATGTGA+TGG | - | chr8_1:49608782-49608801 | None:intergenic | 50.0% | |
| TGAGCTCCCTACTTATCAGC+TGG | + | chr8_1:49609021-49609040 | Msa1198270:intron | 50.0% | |
| ! | TATCAGCTGGTCTATCACCG+AGG | + | chr8_1:49609034-49609053 | Msa1198270:intron | 50.0% |
| TGCAATACTTCTCGGATGCC+TGG | - | chr8_1:49610240-49610259 | None:intergenic | 50.0% | |
| GCATCAGGATGCCGAATACA+TGG | + | chr8_1:49610257-49610276 | Msa1198270:CDS | 50.0% | |
| TCGTTGGCAATCTACGTTCC+AGG | + | chr8_1:49610316-49610335 | Msa1198270:CDS | 50.0% | |
| ACTCGTACATGCTTGCACAG+AGG | + | chr8_1:49610453-49610472 | Msa1198270:CDS | 50.0% | |
| GAAAGCCCTCGCCAAAGCAA+AGG | + | chr8_1:49610478-49610497 | Msa1198270:CDS | 55.0% | |
| AGCAGCCTTTGCTTTGGCGA+GGG | - | chr8_1:49610486-49610505 | None:intergenic | 55.0% | |
| AAGCAGCCTTTGCTTTGGCG+AGG | - | chr8_1:49610487-49610506 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 49607721 | 49610839 | 49607721 | ID=Msa1198270;Name=Msa1198270 |
| chr8_1 | mRNA | 49607721 | 49610839 | 49607721 | ID=Msa1198270-mRNA-1;Parent=Msa1198270;Name=Msa1198270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=291|0.75|0.88|0.88|1|1|9|331|235 |
| chr8_1 | exon | 49607721 | 49608082 | 49607721 | ID=Msa1198270-mRNA-1:exon:15560;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49608186 | 49608297 | 49608186 | ID=Msa1198270-mRNA-1:exon:15561;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49608460 | 49608478 | 49608460 | ID=Msa1198270-mRNA-1:exon:15562;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49608565 | 49608653 | 49608565 | ID=Msa1198270-mRNA-1:exon:15563;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49609286 | 49609381 | 49609286 | ID=Msa1198270-mRNA-1:exon:15564;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49609514 | 49609584 | 49609514 | ID=Msa1198270-mRNA-1:exon:15565;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49609677 | 49609758 | 49609677 | ID=Msa1198270-mRNA-1:exon:15566;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49610241 | 49610337 | 49610241 | ID=Msa1198270-mRNA-1:exon:15567;Parent=Msa1198270-mRNA-1 |
| chr8_1 | exon | 49610438 | 49610839 | 49610438 | ID=Msa1198270-mRNA-1:exon:15568;Parent=Msa1198270-mRNA-1 |
| chr8_1 | five_prime_UTR | 49607721 | 49608011 | 49607721 | ID=Msa1198270-mRNA-1:five_prime_utr;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49608012 | 49608082 | 49608012 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49608186 | 49608297 | 49608186 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49608460 | 49608478 | 49608460 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49608565 | 49608653 | 49608565 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49609286 | 49609381 | 49609286 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49609514 | 49609584 | 49609514 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49609677 | 49609758 | 49609677 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49610241 | 49610337 | 49610241 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | CDS | 49610438 | 49610508 | 49610438 | ID=Msa1198270-mRNA-1:cds;Parent=Msa1198270-mRNA-1 |
| chr8_1 | three_prime_UTR | 49610509 | 49610839 | 49610509 | ID=Msa1198270-mRNA-1:three_prime_utr;Parent=Msa1198270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
