AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0962880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962880 MtrunA17_Chr6g0482941 95.525 514 8 1 1 499 1 514 0.0 1014
Msa0962880 MtrunA17_Chr6g0482951 91.829 514 27 1 1 499 1 514 0.0 982
Msa0962880 MtrunA17_Chr4g0043091 52.183 481 209 5 40 499 25 505 1.81e-177 508
Msa0962880 MtrunA17_Chr4g0033271 48.911 505 235 8 15 497 8 511 1.01e-167 483
Msa0962880 MtrunA17_Chr6g0482131 48.515 505 232 8 20 498 11 513 1.98e-167 483
Msa0962880 MtrunA17_Chr6g0482081 50.000 506 224 9 20 498 11 514 1.16e-166 481
Msa0962880 MtrunA17_Chr3g0090131 50.847 472 203 7 43 495 21 482 4.71e-165 476
Msa0962880 MtrunA17_Chr4g0033201 48.323 507 236 10 14 497 9 512 1.87e-164 475
Msa0962880 MtrunA17_Chr4g0042171 50.316 475 214 5 43 495 24 498 1.88e-164 475
Msa0962880 MtrunA17_Chr6g0482071 48.323 507 232 8 19 499 13 515 2.20e-164 475
Msa0962880 MtrunA17_Chr4g0033401 48.228 508 238 8 13 496 3 509 4.56e-163 472
Msa0962880 MtrunA17_Chr3g0090111 50.531 471 205 7 43 495 19 479 6.65e-163 470
Msa0962880 MtrunA17_Chr3g0087261 48.111 503 243 5 15 499 9 511 4.86e-162 469
Msa0962880 MtrunA17_Chr4g0033331 49.287 491 225 7 29 496 25 514 6.02e-162 469
Msa0962880 MtrunA17_Chr2g0329191 48.857 481 225 6 38 497 29 509 2.23e-161 467
Msa0962880 MtrunA17_Chr4g0033321 47.451 510 242 9 13 498 3 510 1.44e-160 465
Msa0962880 MtrunA17_Chr2g0329201 47.316 503 241 7 17 497 7 507 8.42e-160 463
Msa0962880 MtrunA17_Chr4g0033311 46.863 510 245 7 15 498 7 516 1.72e-159 463
Msa0962880 MtrunA17_Chr3g0087271 48.141 511 236 8 13 499 7 512 2.42e-159 462
Msa0962880 MtrunA17_Chr4g0033191 48.745 478 221 8 43 497 43 519 2.25e-155 452
Msa0962880 MtrunA17_Chr4g0074561 47.158 475 228 7 48 499 40 514 2.89e-154 449
Msa0962880 MtrunA17_Chr3g0088441 45.957 507 251 7 15 498 9 515 3.37e-154 449
Msa0962880 MtrunA17_Chr4g0033341 46.667 510 247 8 11 497 36 543 3.88e-154 450
Msa0962880 MtrunA17_Chr2g0288071 45.882 510 245 8 15 499 41 544 7.09e-151 442
Msa0962880 MtrunA17_Chr2g0317841 45.322 481 244 4 34 495 23 503 1.28e-149 438
Msa0962880 MtrunA17_Chr2g0317821 45.643 482 241 5 34 495 23 503 3.26e-149 437
Msa0962880 MtrunA17_Chr4g0074551 46.512 473 231 6 48 499 55 526 4.25e-149 437
Msa0962880 MtrunA17_Chr2g0288021 45.283 477 241 5 43 499 35 511 5.27e-149 436
Msa0962880 MtrunA17_Chr4g0010501 47.357 473 229 6 43 497 24 494 2.71e-148 433
Msa0962880 MtrunA17_Chr2g0329321 44.186 516 240 8 2 497 1 488 4.00e-147 430
Msa0962880 MtrunA17_Chr4g0033261 43.077 520 247 8 2 498 1 494 6.39e-146 427
Msa0962880 MtrunA17_Chr5g0430451 43.992 516 233 8 14 497 7 498 4.00e-138 407
Msa0962880 MtrunA17_Chr4g0006971 44.068 472 244 6 42 498 26 492 1.36e-136 404
Msa0962880 MtrunA17_Chr1g0195611 43.393 507 256 8 7 499 2 491 1.36e-136 404
Msa0962880 MtrunA17_Chr4g0033231 42.116 501 241 8 20 497 19 493 1.80e-136 403
Msa0962880 MtrunA17_Chr7g0242681 45.339 472 237 7 42 498 37 502 2.21e-136 404
Msa0962880 MtrunA17_Chr5g0428831 42.744 503 258 8 7 495 2 488 4.73e-134 397
Msa0962880 MtrunA17_Chr4g0006111 42.323 508 237 9 23 499 45 527 1.09e-132 394
Msa0962880 MtrunA17_Chr7g0242691 43.220 472 248 7 42 498 30 496 1.18e-130 389
Msa0962880 MtrunA17_Chr4g0006131 41.061 509 239 9 25 499 22 503 8.17e-125 374
Msa0962880 MtrunA17_Chr5g0418871 58.703 293 120 1 64 355 4 296 1.70e-123 364
Msa0962880 MtrunA17_Chr1g0195641 45.692 383 194 4 40 410 24 404 5.07e-112 337
Msa0962880 MtrunA17_Chr7g0234091 40.381 473 248 10 44 497 76 533 3.18e-110 337
Msa0962880 MtrunA17_Chr7g0234131 38.771 472 256 10 44 496 76 533 4.58e-106 327
Msa0962880 MtrunA17_Chr7g0234111 39.407 472 252 10 44 496 76 532 6.42e-106 326
Msa0962880 MtrunA17_Chr2g0301231 40.909 418 191 9 110 497 1 392 2.73e-95 294
Msa0962880 MtrunA17_Chr3g0087201 47.561 328 154 5 184 495 17 342 7.09e-92 283
Msa0962880 MtrunA17_Chr7g0230651 40.556 360 192 5 97 443 26 376 2.01e-88 276
Msa0962880 MtrunA17_Chr7g0227561 38.433 268 128 6 45 308 48 282 1.25e-56 191
Msa0962880 MtrunA17_Chr7g0236731 43.348 233 125 4 133 363 32 259 6.40e-54 183
Msa0962880 MtrunA17_Chr3g0087191 53.741 147 65 2 40 183 19 165 2.50e-47 161
Msa0962880 MtrunA17_Chr8g0352881 46.739 92 49 0 265 356 57 148 2.17e-21 90.9
Msa0962880 MtrunA17_Chr5g0418861 46.154 91 45 3 410 496 1 91 2.31e-20 85.9
Msa0962880 MtrunA17_Chr4g0068871 24.390 410 250 13 102 499 175 536 2.42e-18 88.2
Msa0962880 MtrunA17_Chr2g0288031 54.237 59 27 0 193 251 5 63 4.47e-18 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962880 AT3G18080.1 76.892 489 97 2 25 497 21 509 0.0 786
Msa0962880 AT3G18070.3 71.690 491 111 4 25 499 16 494 0.0 736
Msa0962880 AT3G18070.1 71.487 491 118 4 25 499 16 500 0.0 733
Msa0962880 AT3G18070.4 74.000 350 84 3 26 374 17 360 0.0 546
Msa0962880 AT3G18070.2 72.121 330 76 2 186 499 94 423 1.54e-177 505
Msa0962880 AT3G18070.2 63.750 80 25 1 25 104 16 91 1.38e-25 109
Msa0962880 AT3G18070.7 73.312 311 67 2 205 499 1 311 2.90e-170 483
Msa0962880 AT1G26560.1 50.105 475 215 6 43 495 32 506 2.27e-166 480
Msa0962880 AT5G54570.1 51.245 482 212 6 37 495 24 505 1.77e-164 476
Msa0962880 AT5G44640.1 47.732 507 239 9 13 499 5 505 2.11e-155 452
Msa0962880 AT2G44450.1 49.792 480 218 7 40 499 28 504 2.50e-153 447
Msa0962880 AT5G42260.1 47.410 502 238 8 10 491 2 497 2.51e-150 439
Msa0962880 AT1G02850.2 47.558 471 216 8 44 495 27 485 4.80e-150 438
Msa0962880 AT2G44480.1 46.186 485 239 6 33 496 26 509 5.42e-150 439
Msa0962880 AT2G44480.3 46.186 485 239 6 33 496 57 540 1.38e-149 439
Msa0962880 AT4G21760.1 46.087 460 237 4 48 499 59 515 7.57e-149 436
Msa0962880 AT1G61820.1 47.589 477 218 8 48 497 35 506 1.38e-148 435
Msa0962880 AT4G21760.2 45.319 470 236 4 48 499 59 525 1.54e-148 436
Msa0962880 AT2G25630.1 47.465 493 239 9 17 499 5 487 2.94e-148 433
Msa0962880 AT5G36890.2 45.979 485 226 7 31 495 11 479 2.47e-147 431
Msa0962880 AT5G36890.1 45.979 485 226 7 31 495 11 479 2.50e-147 431
Msa0962880 AT1G02850.5 45.547 494 215 9 44 495 27 508 9.61e-146 428
Msa0962880 AT1G02850.4 45.455 495 215 10 44 495 27 509 3.57e-144 424
Msa0962880 AT5G54570.3 50.467 428 189 5 37 442 24 450 2.09e-143 419
Msa0962880 AT5G24550.1 44.643 504 253 8 20 497 8 511 3.81e-143 422
Msa0962880 AT3G60130.1 46.737 475 227 8 43 495 30 500 2.77e-141 416
Msa0962880 AT1G61810.1 45.378 476 230 7 48 497 38 509 2.69e-140 414
Msa0962880 AT1G02850.1 45.435 471 199 9 44 495 27 458 7.13e-140 411
Msa0962880 AT4G27830.1 42.400 500 254 9 12 495 3 484 4.12e-139 410
Msa0962880 AT5G54570.2 51.471 408 176 5 110 495 1 408 2.30e-136 401
Msa0962880 AT3G60140.1 43.056 504 257 9 18 497 7 504 5.46e-136 405
Msa0962880 AT5G24540.1 45.238 504 250 8 20 497 8 511 6.41e-136 403
Msa0962880 AT2G44460.1 45.079 508 252 10 15 498 3 507 4.00e-135 403
Msa0962880 AT2G44470.3 42.829 509 257 11 17 497 5 507 5.68e-135 403
Msa0962880 AT1G61810.3 45.455 462 222 7 48 483 38 495 9.20e-135 400
Msa0962880 AT1G60090.2 41.212 495 258 7 15 495 7 482 2.36e-133 396
Msa0962880 AT4G27820.1 43.923 469 240 7 42 495 22 482 4.80e-132 392
Msa0962880 AT1G60090.1 40.481 499 263 7 15 495 7 489 5.55e-132 392
Msa0962880 AT1G51470.1 43.943 487 240 11 34 497 35 511 5.40e-131 390
Msa0962880 AT1G47600.2 44.215 484 242 12 34 497 35 510 3.80e-130 388
Msa0962880 AT1G47600.1 44.124 485 242 12 34 497 35 511 4.97e-130 387
Msa0962880 AT4G22100.1 41.631 466 250 7 45 495 24 482 6.57e-129 384
Msa0962880 AT1G75940.1 44.239 486 233 12 43 495 37 517 3.35e-128 384
Msa0962880 AT1G45191.4 41.685 463 256 5 44 498 30 486 8.02e-128 382
Msa0962880 AT3G21370.1 43.687 499 240 14 28 495 23 511 2.95e-127 381
Msa0962880 AT2G44490.1 42.469 478 247 10 45 495 16 492 6.29e-127 381
Msa0962880 AT3G09260.1 42.032 502 261 11 20 497 17 512 8.45e-127 380
Msa0962880 AT2G44480.2 46.437 407 198 4 110 496 1 407 2.53e-126 375
Msa0962880 AT5G28510.1 41.487 511 268 12 16 497 13 521 1.10e-124 374
Msa0962880 AT3G60120.1 43.867 481 237 11 45 497 16 491 1.16e-124 375
Msa0962880 AT3G62750.1 41.164 481 247 8 31 495 13 473 2.33e-124 372
Msa0962880 AT5G26000.1 41.860 516 255 11 15 495 6 511 2.66e-124 374
Msa0962880 AT1G66280.1 41.879 511 268 11 10 495 4 510 3.00e-124 373
Msa0962880 AT3G03640.1 41.683 511 260 13 18 497 11 514 4.71e-124 373
Msa0962880 AT3G62750.2 41.164 481 247 8 31 495 39 499 7.28e-124 372
Msa0962880 AT1G45191.2 40.725 469 258 6 44 498 30 492 9.31e-124 371
Msa0962880 AT3G18070.5 71.369 241 53 2 186 410 94 334 1.13e-123 365
Msa0962880 AT3G18070.5 63.750 80 25 1 25 104 16 91 5.27e-26 109
Msa0962880 AT1G45191.6 40.295 474 258 6 44 498 30 497 4.10e-123 370
Msa0962880 AT1G66270.1 41.633 502 260 11 21 497 19 512 2.99e-122 368
Msa0962880 AT1G45191.1 39.834 482 261 6 44 498 30 509 6.59e-122 367
Msa0962880 AT1G02850.3 46.305 406 170 7 44 409 27 424 2.31e-121 362
Msa0962880 AT2G32860.2 42.348 477 250 9 48 499 99 575 6.29e-121 367
Msa0962880 AT2G32860.1 42.647 476 249 10 48 499 99 574 1.53e-120 367
Msa0962880 AT1G52400.3 43.361 482 239 14 43 495 39 515 2.41e-120 363
Msa0962880 AT1G52400.1 43.361 482 239 14 43 495 39 515 2.41e-120 363
Msa0962880 AT1G61810.5 45.278 413 197 6 110 497 1 409 1.97e-119 357
Msa0962880 AT1G66270.2 41.235 502 260 12 21 497 19 510 9.57e-119 359
Msa0962880 AT3G60130.2 45.763 413 199 7 104 495 40 448 5.16e-118 355
Msa0962880 AT3G60130.3 46.020 402 203 7 104 495 40 437 6.77e-117 352
Msa0962880 AT3G18070.6 72.973 222 44 2 205 410 1 222 1.87e-116 342
Msa0962880 AT5G24540.2 43.848 447 227 6 20 442 8 454 1.69e-114 346
Msa0962880 AT5G25980.2 40.204 490 260 11 32 495 40 522 1.13e-113 347
Msa0962880 AT3G62740.1 37.827 497 266 9 17 495 7 478 3.24e-113 344
Msa0962880 AT2G44470.1 40.929 452 235 9 17 442 5 450 1.21e-112 341
Msa0962880 AT4G27830.2 43.035 402 207 7 110 495 1 396 1.86e-112 339
Msa0962880 AT2G44480.4 50.779 321 153 4 33 350 57 375 9.57e-110 331
Msa0962880 AT5G26000.2 41.522 460 227 9 15 442 6 455 2.60e-109 332
Msa0962880 AT1G60270.1 46.067 356 177 5 43 387 24 375 2.57e-108 327
Msa0962880 AT1G61810.4 44.041 386 188 6 48 409 38 419 3.74e-108 328
Msa0962880 AT1G61820.3 46.883 369 166 6 154 497 4 367 6.74e-108 326
Msa0962880 AT4G27820.2 43.142 401 209 6 110 495 1 397 6.56e-107 325
Msa0962880 AT4G27820.3 43.142 401 209 6 110 495 1 397 6.56e-107 325
Msa0962880 AT3G62750.4 40.559 429 221 7 31 445 39 447 2.02e-106 325
Msa0962880 AT3G60140.2 41.262 412 216 6 18 409 7 412 3.03e-106 325
Msa0962880 AT2G44450.2 48.596 356 163 5 161 499 1 353 1.61e-105 319
Msa0962880 AT1G45191.5 45.015 331 176 2 44 372 30 356 5.99e-103 315
Msa0962880 AT1G45191.3 45.015 331 176 2 44 372 30 356 7.08e-103 315
Msa0962880 AT1G52400.2 42.623 427 213 12 43 442 39 460 2.03e-101 312
Msa0962880 AT3G62750.6 41.045 402 207 6 110 495 1 388 4.98e-101 310
Msa0962880 AT3G62750.5 41.045 402 207 6 110 495 1 388 4.98e-101 310
Msa0962880 AT2G44470.2 43.681 364 191 7 17 372 5 362 1.68e-100 308
Msa0962880 AT3G62740.2 38.009 442 233 8 17 442 7 423 1.01e-99 306
Msa0962880 AT5G25980.3 39.401 434 233 9 32 442 40 466 2.61e-99 307
Msa0962880 AT5G25980.1 39.401 434 233 9 32 442 40 466 2.61e-99 307
Msa0962880 AT3G62750.7 44.785 326 166 3 31 356 13 324 2.61e-97 298
Msa0962880 AT3G62750.8 44.785 326 166 3 31 356 13 324 2.61e-97 298
Msa0962880 AT3G62750.3 44.785 326 166 3 31 356 39 350 2.03e-96 298
Msa0962880 AT2G44460.2 45.556 360 173 8 161 498 3 361 1.28e-92 289
Msa0962880 AT1G61810.2 47.909 263 135 2 48 308 38 300 4.54e-85 265
Msa0962880 AT5G48375.1 38.293 410 184 8 70 461 53 411 6.53e-85 269
Msa0962880 AT1G60270.2 44.983 289 147 4 110 387 1 288 7.32e-83 259
Msa0962880 AT2G44480.5 44.224 303 151 3 212 496 1 303 5.07e-82 257
Msa0962880 AT1G51490.1 40.181 331 170 11 50 371 27 338 1.60e-69 228
Msa0962880 AT5G16580.1 36.519 293 160 7 178 451 12 297 1.25e-50 175

Find 94 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCATCCCCTTGTTTA+TGG 0.184377 6_3:+86636133 Msa0962880:CDS
GATGATGGAGCAAATGTATT+TGG 0.234902 6_3:+86637342 Msa0962880:CDS
ACTATGTTCTTATCTGAAAA+TGG 0.262006 6_3:+86636919 Msa0962880:CDS
GTTCTTGTTAGTTCAGTTAA+TGG 0.269019 6_3:+86633269 Msa0962880:CDS
GTATCCAAATGCACTGTTTC+AGG 0.271354 6_3:-86633302 None:intergenic
TTCTTGTTAGTTCAGTTAAT+GGG 0.276549 6_3:+86633270 Msa0962880:CDS
AACCAATATGCAGACATCTT+AGG 0.282698 6_3:-86637465 None:intergenic
AGGGTCGTGGACCTAGTATT+TGG 0.302940 6_3:+86633414 Msa0962880:CDS
GCTGCTCTTGGCTATGATAA+TGG 0.303187 6_3:+86635299 Msa0962880:CDS
AATTGTACAGCTGGAAATTC+AGG 0.314656 6_3:+86635359 Msa0962880:CDS
GATAACTTTGAATGGAGATT+AGG 0.315709 6_3:+86637387 Msa0962880:CDS
ATAACTTTGAATGGAGATTA+GGG 0.318193 6_3:+86637388 Msa0962880:CDS
ATGGAACTGGCAAAGTAAAT+TGG 0.320592 6_3:+86634830 Msa0962880:CDS
GGAAGGTGTTCAAAAGAATA+TGG 0.324523 6_3:+86635335 Msa0962880:CDS
GATTGATAGCCAGGGACTTT+TGG 0.337835 6_3:-86636304 None:intergenic
ACCAATATGCAGACATCTTA+GGG 0.340920 6_3:-86637464 None:intergenic
ACAGGAATTGTCGCAAATAA+TGG 0.342164 6_3:+86634318 Msa0962880:intron
AAATTGTGAGCTACAGTATA+AGG 0.347951 6_3:-86635389 None:intergenic
GAAACAGTGCATTTGGATAC+TGG 0.355962 6_3:+86633305 Msa0962880:CDS
TTTCCTAAAGGGTTTGTGTT+TGG 0.360877 6_3:+86633347 Msa0962880:CDS
ACTCCAAACACAAACCCTTT+AGG 0.380059 6_3:-86633350 None:intergenic
TGCAAAATATTGTTGGGAAC+AGG 0.391916 6_3:+86636173 Msa0962880:CDS
CCCCTAAGATGTCTGCATAT+TGG 0.396318 6_3:+86637463 Msa0962880:CDS
CATTGCTTGATAACTTTGAA+TGG 0.399596 6_3:+86637379 Msa0962880:CDS
ACTAGTATTGTCTTTGAAGA+TGG 0.407904 6_3:+86633187 Msa0962880:exon
TCAGCCTTTGATCTTGTAAG+AGG 0.416498 6_3:-86635751 None:intergenic
CCAAGAGTTGTTGCTGCTCT+TGG 0.417648 6_3:+86635287 Msa0962880:CDS
TTCCAATCCGATTGATAGCC+AGG 0.422659 6_3:-86636313 None:intergenic
ACTTCCTCCTTGGTGAACTT+TGG 0.428688 6_3:-86636199 None:intergenic
GAAAAGCAAAAGGGTAGGAT+TGG 0.432684 6_3:+86635700 Msa0962880:CDS
ATGGAGACAGAGTGAAGAAC+TGG 0.441462 6_3:+86635249 Msa0962880:CDS
AGAACTATGCAAAATATTGT+TGG 0.445283 6_3:+86636166 Msa0962880:CDS
TGTGTTAGTGCTTCAATCAT+AGG 0.447465 6_3:-86637690 None:intergenic
ATCGATTACTTGCTCGAAAA+GGG 0.448910 6_3:+86634880 Msa0962880:CDS
GAATATGGAAATTGTACAGC+TGG 0.451912 6_3:+86635350 Msa0962880:CDS
GTCTTTGAAGATGGTGATGT+TGG 0.452280 6_3:+86633196 Msa0962880:exon
GGGTCGTGGACCTAGTATTT+GGG 0.452621 6_3:+86633415 Msa0962880:CDS
TTTCAGATAAGAACATAGTT+GGG 0.458030 6_3:-86636915 None:intergenic
CTAAAGAAAGCTATAGATGA+TGG 0.459612 6_3:+86637327 Msa0962880:CDS
AACTTTGATGCAGATGGAAC+TGG 0.459795 6_3:+86634817 Msa0962880:intron
GAACTATGCAAAATATTGTT+GGG 0.468791 6_3:+86636167 Msa0962880:CDS
AGTGCCTGAAACAGTGCATT+TGG 0.469335 6_3:+86633298 Msa0962880:CDS
GATCGATTACTTGCTCGAAA+AGG 0.469757 6_3:+86634879 Msa0962880:CDS
TTAGGGTACACATCAAGGTT+TGG 0.474691 6_3:+86637405 Msa0962880:CDS
TATTTCAACTCGAGAGCTAA+AGG 0.475144 6_3:-86635045 None:intergenic
CCAAGAGCAGCAACAACTCT+TGG 0.484195 6_3:-86635287 None:intergenic
GGAGATTAGGGTACACATCA+AGG 0.485807 6_3:+86637400 Msa0962880:CDS
GAGCTAAAGGAAGGTCATAA+TGG 0.487554 6_3:-86635032 None:intergenic
GACTTGATTAATGCAAGTCT+TGG 0.490418 6_3:+86637626 Msa0962880:three_prime_UTR
TGCTTATCAAGTAGAGGGTA+TGG 0.494673 6_3:+86633382 Msa0962880:CDS
AAAAGTCCCTGGCTATCAAT+CGG 0.514691 6_3:+86636306 Msa0962880:CDS
TGTTGTGTCATGCAAACCCT+TGG 0.515909 6_3:-86637271 None:intergenic
GCTTCTTAAGTTTCTAATTG+TGG 0.523480 6_3:+86637535 Msa0962880:three_prime_UTR
TCCCTGGCTATCAATCGGAT+TGG 0.537085 6_3:+86636311 Msa0962880:CDS
TTGGCTATACAATGTACCAT+GGG 0.537665 6_3:+86636849 Msa0962880:CDS
GCAGGAAGATATAGATCTCA+TGG 0.540465 6_3:+86634655 Msa0962880:intron
ATGAAAACATCCCAAATACT+AGG 0.542908 6_3:-86633425 None:intergenic
TTGGAAAATGTTACATTACC+AGG 0.543889 6_3:-86637252 None:intergenic
AACTTCTGCTTATCAAGTAG+AGG 0.544999 6_3:+86633376 Msa0962880:CDS
CAAATCAATAATGTACATCA+AGG 0.545760 6_3:+86636879 Msa0962880:CDS
GAGGGTATGGCTAGCAAAGA+GGG 0.549403 6_3:+86633395 Msa0962880:CDS
ATGTATTTGGATACCATGCT+TGG 0.552081 6_3:+86637355 Msa0962880:CDS
GGAGGAAGTAAAACTTGTGA+AGG 0.553360 6_3:+86636213 Msa0962880:CDS
TTTAGGAAAAGCAAAAGGGT+AGG 0.554677 6_3:+86635695 Msa0962880:intron
TCTTGTTAGTTCAGTTAATG+GGG 0.559570 6_3:+86633271 Msa0962880:CDS
TTAGTACTTACACAACGTTA+CGG 0.561802 6_3:-86635083 None:intergenic
TAATGGTAGAGATTTGCATA+AGG 0.585059 6_3:-86635015 None:intergenic
ACAAGAATAAACTATTACAA+AGG 0.585424 6_3:+86637291 Msa0962880:CDS
TGGACCATGAGATTGAGAAC+CGG 0.587343 6_3:-86634700 None:intergenic
ATGGCTAGCAAAGAGGGTCG+TGG 0.587647 6_3:+86633401 Msa0962880:CDS
TATCAAGCAATGACCAAGCA+TGG 0.588296 6_3:-86637368 None:intergenic
ATTGTCGCAAATAATGGCAC+AGG 0.588601 6_3:+86634324 Msa0962880:CDS
CAAGCAAAACCAAAAGTCCC+TGG 0.590365 6_3:+86636295 Msa0962880:CDS
ATTGATTTGTACAAGCCCCA+TGG 0.599734 6_3:-86636865 None:intergenic
ACTTCTGCTTATCAAGTAGA+GGG 0.604107 6_3:+86633377 Msa0962880:CDS
TGAGCCTCTTACAAGATCAA+AGG 0.608751 6_3:+86635747 Msa0962880:CDS
AGAGGGTATGGCTAGCAAAG+AGG 0.611917 6_3:+86633394 Msa0962880:CDS
ATTGGCTATACAATGTACCA+TGG 0.614778 6_3:+86636848 Msa0962880:CDS
TCCAATCCGATTGATAGCCA+GGG 0.623481 6_3:-86636312 None:intergenic
TCAACTCGAGAGCTAAAGGA+AGG 0.625800 6_3:-86635041 None:intergenic
TTGGATACTCACCATAAACA+AGG 0.626001 6_3:-86636144 None:intergenic
AATACCGGTTCTCAATCTCA+TGG 0.626644 6_3:+86634696 Msa0962880:CDS
CAGTGCATTTGGATACTGGA+GGG 0.628351 6_3:+86633309 Msa0962880:CDS
ACTGGCAAAGTAAATTGGAA+AGG 0.635766 6_3:+86634835 Msa0962880:CDS
TGGATACTCACCATAAACAA+GGG 0.638550 6_3:-86636143 None:intergenic
TTTGTAGGTATGGATGATCC+TGG 0.640462 6_3:+86637234 Msa0962880:intron
GAGGAAGTAAAACTTGTGAA+GGG 0.642208 6_3:+86636214 Msa0962880:CDS
GCTCTCGAGTTGAAATACAA+CGG 0.657864 6_3:+86635051 Msa0962880:CDS
GGATACTCACCATAAACAAG+GGG 0.663952 6_3:-86636142 None:intergenic
ACAGTGCATTTGGATACTGG+AGG 0.685224 6_3:+86633308 Msa0962880:CDS
CCAATATGCAGACATCTTAG+GGG 0.704502 6_3:-86637463 None:intergenic
GCTTCCAAAGTTCACCAAGG+AGG 0.718350 6_3:+86636195 Msa0962880:CDS
CAGGCTTCCAAAGTTCACCA+AGG 0.723907 6_3:+86636192 Msa0962880:CDS
TGGCTATACAATGTACCATG+GGG 0.734933 6_3:+86636850 Msa0962880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAAAAATTTAAATA+TGG - chr6_3:86636374-86636393 None:intergenic 0.0%
!!! TTAATCTCTTTTAAAAAAAT+TGG + chr6_3:86634039-86634058 Msa0962880:intron 10.0%
!!! AAATATGATTTTGTTTTATA+TGG + chr6_3:86635140-86635159 Msa0962880:intron 10.0%
!! ATCAAAATATTAATATTACT+TGG - chr6_3:86635460-86635479 None:intergenic 10.0%
!! AAGAATAATTAATTGAGATT+AGG - chr6_3:86633476-86633495 None:intergenic 15.0%
!! ACATTATATAATATGTTGTT+TGG - chr6_3:86634488-86634507 None:intergenic 15.0%
!! ATAGAAATATTTGAATTACT+TGG - chr6_3:86634734-86634753 None:intergenic 15.0%
!!! TTTTGATTCTTTTTTAGATT+AGG + chr6_3:86635473-86635492 Msa0962880:intron 15.0%
!! TTTCAAATTATTAACAATGT+CGG + chr6_3:86636011-86636030 Msa0962880:intron 15.0%
!! AATTTCTTAGTGTATATTTA+TGG + chr6_3:86636093-86636112 Msa0962880:intron 15.0%
!! AAAAATTTAAATATGGTTGA+AGG - chr6_3:86636367-86636386 None:intergenic 15.0%
!!! TAAAAACACACATTTTTACA+TGG - chr6_3:86633549-86633568 None:intergenic 20.0%
!!! GTAAAAATGTGTGTTTTTAT+TGG + chr6_3:86633550-86633569 Msa0962880:intron 20.0%
!!! TTGTATTGATGAAATGATTT+AGG + chr6_3:86633586-86633605 Msa0962880:intron 20.0%
!!! TGTATTGATGAAATGATTTA+GGG + chr6_3:86633587-86633606 Msa0962880:intron 20.0%
!!! ATGTTGGTTTTTGTAAAATT+TGG + chr6_3:86633649-86633668 Msa0962880:intron 20.0%
!!! AATTAGTTCTGCTTTTAATA+TGG + chr6_3:86633702-86633721 Msa0962880:intron 20.0%
!! AAGAAGATTGAAATAGAAAA+AGG - chr6_3:86633793-86633812 None:intergenic 20.0%
!!! TTTCAATCTTCTTCTTTTTT+AGG + chr6_3:86633800-86633819 Msa0962880:intron 20.0%
!!! TTCAATCTTCTTCTTTTTTA+GGG + chr6_3:86633801-86633820 Msa0962880:intron 20.0%
!!! AAATTGGTAAGATTTTGATT+TGG + chr6_3:86634055-86634074 Msa0962880:intron 20.0%
!! TATTGTTTCAAATTCATAAC+AGG + chr6_3:86634300-86634319 Msa0962880:intron 20.0%
!!! TCTAAATACTAACATAGTTT+TGG + chr6_3:86634924-86634943 Msa0962880:intron 20.0%
!! TAAGTACTAAAATACCTTTA+TGG + chr6_3:86635096-86635115 Msa0962880:intron 20.0%
!!! TTTTTAGTCCTGTAAAATTA+CGG - chr6_3:86635122-86635141 None:intergenic 20.0%
!!! AATGATCGATGTTTTAAAAT+TGG + chr6_3:86635181-86635200 Msa0962880:intron 20.0%
!!! TTTTTTTAGGAAAAGCAAAA+GGG + chr6_3:86635691-86635710 Msa0962880:intron 20.0%
!! AAATTAACAAATATGAAGCA+CGG - chr6_3:86636078-86636097 None:intergenic 20.0%
!!! ATTGATTTTCTTGCTAAATA+TGG + chr6_3:86636657-86636676 Msa0962880:intron 20.0%
!!! ATTTATATGTGATACTTTTC+AGG + chr6_3:86636816-86636835 Msa0962880:intron 20.0%
!! TTTCATATTTCCTTACAAAA+AGG - chr6_3:86637181-86637200 None:intergenic 20.0%
!!! GTAAACATTTAATGATTTGT+AGG + chr6_3:86637219-86637238 Msa0962880:intron 20.0%
!! ACAAGAATAAACTATTACAA+AGG + chr6_3:86637291-86637310 Msa0962880:CDS 20.0%
! TTCTTGTTAGTTCAGTTAAT+GGG + chr6_3:86633270-86633289 Msa0962880:CDS 25.0%
!! ACAAAAACCAACATACTTTT+TGG - chr6_3:86633643-86633662 None:intergenic 25.0%
!!! TCAATCTTCTTCTTTTTTAG+GGG + chr6_3:86633802-86633821 Msa0962880:intron 25.0%
! TTCAATCATATTCTGTCTAT+TGG - chr6_3:86633976-86633995 None:intergenic 25.0%
!!! AAAAGAAGTATTTTTTGGAC+TGG - chr6_3:86634206-86634225 None:intergenic 25.0%
!! GTCCAAAAAATACTTCTTTT+TGG + chr6_3:86634206-86634225 Msa0962880:intron 25.0%
!!! GACCAAAAAGAAGTATTTTT+TGG - chr6_3:86634211-86634230 None:intergenic 25.0%
! TAAATGTAAGGTTCATACTA+AGG - chr6_3:86634460-86634479 None:intergenic 25.0%
!! CTCAAATATTTTCAATTTGC+AGG + chr6_3:86634637-86634656 Msa0962880:intron 25.0%
!!! AGCTAAATTTTGATCAATAC+CGG + chr6_3:86634681-86634700 Msa0962880:CDS 25.0%
! TGAATTACTTGGAAAAATTC+TGG - chr6_3:86634723-86634742 None:intergenic 25.0%
! CTATGTTAGTATTTAGACTA+TGG - chr6_3:86634921-86634940 None:intergenic 25.0%
!!! GATTTTTGTTTCAAGACATA+TGG + chr6_3:86635230-86635249 Msa0962880:CDS 25.0%
!!! GTTTTGATGTTTTTATCTTG+TGG + chr6_3:86635656-86635675 Msa0962880:intron 25.0%
!!! GTTTTTTTAGGAAAAGCAAA+AGG + chr6_3:86635690-86635709 Msa0962880:intron 25.0%
!! GAATTTTGTTGGATTTTGTT+TGG + chr6_3:86635722-86635741 Msa0962880:CDS 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_3:86635979-86635998 None:intergenic 25.0%
! AAATTATTAACAATGTCGGT+GGG + chr6_3:86636015-86636034 Msa0962880:intron 25.0%
!! ACAATATTTTGCATAGTTCT+TGG - chr6_3:86636166-86636185 None:intergenic 25.0%
! AGAACTATGCAAAATATTGT+TGG + chr6_3:86636166-86636185 Msa0962880:CDS 25.0%
! GAACTATGCAAAATATTGTT+GGG + chr6_3:86636167-86636186 Msa0962880:CDS 25.0%
! TACTTAGAGACTAAATTGAA+TGG - chr6_3:86636401-86636420 None:intergenic 25.0%
!!! ACATATTTTAGAGCCTAAAT+TGG - chr6_3:86636433-86636452 None:intergenic 25.0%
! ATAACAATGACTAAAATCGA+CGG - chr6_3:86636490-86636509 None:intergenic 25.0%
!! TAGAGAGTAATACTTTAGAA+AGG + chr6_3:86636594-86636613 Msa0962880:intron 25.0%
! CAAATCAATAATGTACATCA+AGG + chr6_3:86636879-86636898 Msa0962880:CDS 25.0%
! TTTCAGATAAGAACATAGTT+GGG - chr6_3:86636918-86636937 None:intergenic 25.0%
!! TTTTCAGATAAGAACATAGT+TGG - chr6_3:86636919-86636938 None:intergenic 25.0%
! ACTATGTTCTTATCTGAAAA+TGG + chr6_3:86636919-86636938 Msa0962880:CDS 25.0%
!!! TTGCTTGATACTTTTAAGAT+CGG - chr6_3:86637118-86637137 None:intergenic 25.0%
! ATATTTCCTTACAAAAAGGA+GGG - chr6_3:86637177-86637196 None:intergenic 25.0%
! TTGTAAGGAAATATGAAATG+TGG + chr6_3:86637183-86637202 Msa0962880:intron 25.0%
! TGTAAGGAAATATGAAATGT+GGG + chr6_3:86637184-86637203 Msa0962880:intron 25.0%
!! CATTTAATGATTTGTAGGTA+TGG + chr6_3:86637224-86637243 Msa0962880:intron 25.0%
! ATAACTTTGAATGGAGATTA+GGG + chr6_3:86637388-86637407 Msa0962880:CDS 25.0%
!! CACAACAATTTACTTCTTTT+TGG - chr6_3:86637505-86637524 None:intergenic 25.0%
!!! TAGTGAATAATGTGTTTTTG+TGG + chr6_3:86637558-86637577 Msa0962880:three_prime_UTR 25.0%
!!! ATAATGTGTTTTTGTGGTTT+TGG + chr6_3:86637564-86637583 Msa0962880:three_prime_UTR 25.0%
!!! TTTTTGTGGTTTTGGATAAA+AGG + chr6_3:86637572-86637591 Msa0962880:three_prime_UTR 25.0%
! ACTAGTATTGTCTTTGAAGA+TGG + chr6_3:86633187-86633206 Msa0962880:exon 30.0%
GTTCTTGTTAGTTCAGTTAA+TGG + chr6_3:86633269-86633288 Msa0962880:CDS 30.0%
TCTTGTTAGTTCAGTTAATG+GGG + chr6_3:86633271-86633290 Msa0962880:CDS 30.0%
! AGTAGAGATGTTTTTCCTAA+AGG + chr6_3:86633335-86633354 Msa0962880:CDS 30.0%
! GTAGAGATGTTTTTCCTAAA+GGG + chr6_3:86633336-86633355 Msa0962880:CDS 30.0%
ATGAAAACATCCCAAATACT+AGG - chr6_3:86633428-86633447 None:intergenic 30.0%
! GATGTTTTCATCAAAAAACC+TGG + chr6_3:86633437-86633456 Msa0962880:CDS 30.0%
!!! AACCAACATACTTTTTGGTT+TGG - chr6_3:86633638-86633657 None:intergenic 30.0%
! CTAATGTGTTTAAGCTCTAA+AGG - chr6_3:86634391-86634410 None:intergenic 30.0%
! AAGGTTCATACTAAGGATTT+TGG - chr6_3:86634453-86634472 None:intergenic 30.0%
TGTTTGGCAAGTTAAATGTA+AGG - chr6_3:86634472-86634491 None:intergenic 30.0%
! ATTTGAAACTTTGATGCAGA+TGG + chr6_3:86634811-86634830 Msa0962880:intron 30.0%
TAATGGTAGAGATTTGCATA+AGG - chr6_3:86635018-86635037 None:intergenic 30.0%
TTAGTACTTACACAACGTTA+CGG - chr6_3:86635086-86635105 None:intergenic 30.0%
!!! TCGATGTTTTAAAATTGGAC+AGG + chr6_3:86635186-86635205 Msa0962880:intron 30.0%
AAATTGTGAGCTACAGTATA+AGG - chr6_3:86635392-86635411 None:intergenic 30.0%
!!! GTGATGTTTGTGGTTTTTTT+AGG + chr6_3:86635678-86635697 Msa0962880:intron 30.0%
! AGAGCTAGAGATTTTCATAT+TGG + chr6_3:86635790-86635809 Msa0962880:CDS 30.0%
! TATTGGCTGGTAAAAATTGT+TGG + chr6_3:86635807-86635826 Msa0962880:intron 30.0%
CATAAGAATTGTATGATGCA+CGG + chr6_3:86635890-86635909 Msa0962880:intron 30.0%
CAAATTATTAACAATGTCGG+TGG + chr6_3:86636014-86636033 Msa0962880:intron 30.0%
! TTATGGTGTTTAATTTCCAC+AGG + chr6_3:86636110-86636129 Msa0962880:intron 30.0%
TTAGAGACTAAATTGAATGG+TGG - chr6_3:86636398-86636417 None:intergenic 30.0%
AAGAAAATCAATGTCAGTCA+TGG - chr6_3:86636649-86636668 None:intergenic 30.0%
AATATGGAAGATGCTAAGAA+TGG + chr6_3:86636673-86636692 Msa0962880:intron 30.0%
ACTTGTTTCAAACTTACTCT+TGG - chr6_3:86636712-86636731 None:intergenic 30.0%
!! CTTTTCAGGCATATTCATAT+TGG + chr6_3:86636830-86636849 Msa0962880:intron 30.0%
CATATTTCCTTACAAAAAGG+AGG - chr6_3:86637178-86637197 None:intergenic 30.0%
TTGGAAAATGTTACATTACC+AGG - chr6_3:86637255-86637274 None:intergenic 30.0%
!! TGGTAATGTAACATTTTCCA+AGG + chr6_3:86637254-86637273 Msa0962880:CDS 30.0%
! GGTAATGTAACATTTTCCAA+GGG + chr6_3:86637255-86637274 Msa0962880:CDS 30.0%
CTAAAGAAAGCTATAGATGA+TGG + chr6_3:86637327-86637346 Msa0962880:CDS 30.0%
! CATTGCTTGATAACTTTGAA+TGG + chr6_3:86637379-86637398 Msa0962880:CDS 30.0%
GATAACTTTGAATGGAGATT+AGG + chr6_3:86637387-86637406 Msa0962880:CDS 30.0%
GCTTCTTAAGTTTCTAATTG+TGG + chr6_3:86637535-86637554 Msa0962880:three_prime_UTR 30.0%
TTTCCTAAAGGGTTTGTGTT+TGG + chr6_3:86633347-86633366 Msa0962880:CDS 35.0%
AACTTCTGCTTATCAAGTAG+AGG + chr6_3:86633376-86633395 Msa0962880:CDS 35.0%
ACTTCTGCTTATCAAGTAGA+GGG + chr6_3:86633377-86633396 Msa0962880:CDS 35.0%
TTAGGTAAGAAACACAAACC+AGG - chr6_3:86633458-86633477 None:intergenic 35.0%
! CACCAAACCAAAAAGTATGT+TGG + chr6_3:86633633-86633652 Msa0962880:intron 35.0%
ACAGGAATTGTCGCAAATAA+TGG + chr6_3:86634318-86634337 Msa0962880:intron 35.0%
ATGGAACTGGCAAAGTAAAT+TGG + chr6_3:86634830-86634849 Msa0962880:CDS 35.0%
ACTGGCAAAGTAAATTGGAA+AGG + chr6_3:86634835-86634854 Msa0962880:CDS 35.0%
ATCGATTACTTGCTCGAAAA+GGG + chr6_3:86634880-86634899 Msa0962880:CDS 35.0%
TATTTCAACTCGAGAGCTAA+AGG - chr6_3:86635048-86635067 None:intergenic 35.0%
CTGTAAAATTACGGCCATAA+AGG - chr6_3:86635113-86635132 None:intergenic 35.0%
! CTTTATGGCCGTAATTTTAC+AGG + chr6_3:86635111-86635130 Msa0962880:intron 35.0%
! ATTGGACAGGAAAGATTTTG+CGG + chr6_3:86635199-86635218 Msa0962880:intron 35.0%
! ATTCTTTTGAACACCTTCCA+GGG - chr6_3:86635334-86635353 None:intergenic 35.0%
! TATTCTTTTGAACACCTTCC+AGG - chr6_3:86635335-86635354 None:intergenic 35.0%
!! GGAAGGTGTTCAAAAGAATA+TGG + chr6_3:86635335-86635354 Msa0962880:CDS 35.0%
GAATATGGAAATTGTACAGC+TGG + chr6_3:86635350-86635369 Msa0962880:CDS 35.0%
AATTGTACAGCTGGAAATTC+AGG + chr6_3:86635359-86635378 Msa0962880:CDS 35.0%
!! ACGATGTGTCGTTGTTATTT+CGG + chr6_3:86635531-86635550 Msa0962880:intron 35.0%
! GATTTTCATCATGCACTAAG+TGG + chr6_3:86635621-86635640 Msa0962880:intron 35.0%
! TTATCTTGTGGTGATGTTTG+TGG + chr6_3:86635668-86635687 Msa0962880:intron 35.0%
TTTAGGAAAAGCAAAAGGGT+AGG + chr6_3:86635695-86635714 Msa0962880:intron 35.0%
! CTAGAGATTTTCATATTGGC+TGG + chr6_3:86635794-86635813 Msa0962880:CDS 35.0%
GTTCTTTCTGTTGTACTAGT+TGG - chr6_3:86635868-86635887 None:intergenic 35.0%
CGTGCATCATACAATTCTTA+TGG - chr6_3:86635892-86635911 None:intergenic 35.0%
ACAAATATGAAGCACGGATA+CGG - chr6_3:86636072-86636091 None:intergenic 35.0%
! TTCATTCATCCCCTTGTTTA+TGG + chr6_3:86636133-86636152 Msa0962880:CDS 35.0%
TGGATACTCACCATAAACAA+GGG - chr6_3:86636146-86636165 None:intergenic 35.0%
TTGGATACTCACCATAAACA+AGG - chr6_3:86636147-86636166 None:intergenic 35.0%
TGCAAAATATTGTTGGGAAC+AGG + chr6_3:86636173-86636192 Msa0962880:CDS 35.0%
GAGGAAGTAAAACTTGTGAA+GGG + chr6_3:86636214-86636233 Msa0962880:CDS 35.0%
!! AAGGGCTCAATTGATTTTGT+TGG + chr6_3:86636232-86636251 Msa0962880:CDS 35.0%
!!! ACTTTTGGTTTTGCTTGATG+AGG - chr6_3:86636292-86636311 None:intergenic 35.0%
! TATCAATCGGATTGGAATGT+AGG + chr6_3:86636319-86636338 Msa0962880:intron 35.0%
! ATCAATCGGATTGGAATGTA+GGG + chr6_3:86636320-86636339 Msa0962880:intron 35.0%
AGTATCACTCTCTCCAATTT+AGG + chr6_3:86636417-86636436 Msa0962880:intron 35.0%
ATTGGCTATACAATGTACCA+TGG + chr6_3:86636848-86636867 Msa0962880:CDS 35.0%
TTGGCTATACAATGTACCAT+GGG + chr6_3:86636849-86636868 Msa0962880:CDS 35.0%
TTCATTCCCTTAATTCAGCA+TGG + chr6_3:86637005-86637024 Msa0962880:intron 35.0%
TCATTCCCTTAATTCAGCAT+GGG + chr6_3:86637006-86637025 Msa0962880:intron 35.0%
GTTAACCCATGCTGAATTAA+GGG - chr6_3:86637014-86637033 None:intergenic 35.0%
AGTTAACCCATGCTGAATTA+AGG - chr6_3:86637015-86637034 None:intergenic 35.0%
!!! GGTTCAATCACTTTTTAAGC+TGG - chr6_3:86637097-86637116 None:intergenic 35.0%
! TCTTAACCCTCCTTTTTGTA+AGG + chr6_3:86637168-86637187 Msa0962880:intron 35.0%
!! GATGATGGAGCAAATGTATT+TGG + chr6_3:86637342-86637361 Msa0962880:CDS 35.0%
ATGTATTTGGATACCATGCT+TGG + chr6_3:86637355-86637374 Msa0962880:CDS 35.0%
ACCAATATGCAGACATCTTA+GGG - chr6_3:86637467-86637486 None:intergenic 35.0%
AACCAATATGCAGACATCTT+AGG - chr6_3:86637468-86637487 None:intergenic 35.0%
! TTGGATAAAAGGCCTCTTTT+TGG + chr6_3:86637583-86637602 Msa0962880:three_prime_UTR 35.0%
ACATTGTAGAGACCAAAAAG+AGG - chr6_3:86637598-86637617 None:intergenic 35.0%
GACTTGATTAATGCAAGTCT+TGG + chr6_3:86637626-86637645 Msa0962880:three_prime_UTR 35.0%
! GTCTTTGAAGATGGTGATGT+TGG + chr6_3:86633196-86633215 Msa0962880:exon 40.0%
GTATCCAAATGCACTGTTTC+AGG - chr6_3:86633305-86633324 None:intergenic 40.0%
GAAACAGTGCATTTGGATAC+TGG + chr6_3:86633305-86633324 Msa0962880:CDS 40.0%
ACTCCAAACACAAACCCTTT+AGG - chr6_3:86633353-86633372 None:intergenic 40.0%
TGCTTATCAAGTAGAGGGTA+TGG + chr6_3:86633382-86633401 Msa0962880:CDS 40.0%
! AGTCTCTTTTTCCGACAAAC+AGG - chr6_3:86634085-86634104 None:intergenic 40.0%
ATTGTCGCAAATAATGGCAC+AGG + chr6_3:86634324-86634343 Msa0962880:CDS 40.0%
GCAGGAAGATATAGATCTCA+TGG + chr6_3:86634655-86634674 Msa0962880:intron 40.0%
!! AATACCGGTTCTCAATCTCA+TGG + chr6_3:86634696-86634715 Msa0962880:CDS 40.0%
AACTTTGATGCAGATGGAAC+TGG + chr6_3:86634817-86634836 Msa0962880:intron 40.0%
GATCGATTACTTGCTCGAAA+AGG + chr6_3:86634879-86634898 Msa0962880:CDS 40.0%
GTTCCTTAAACCTATGTTGC+AGG + chr6_3:86634985-86635004 Msa0962880:intron 40.0%
ATGCCTGCAACATAGGTTTA+AGG - chr6_3:86634991-86635010 None:intergenic 40.0%
GAGCTAAAGGAAGGTCATAA+TGG - chr6_3:86635035-86635054 None:intergenic 40.0%
!! GCTCTCGAGTTGAAATACAA+CGG + chr6_3:86635051-86635070 Msa0962880:CDS 40.0%
! TTCTTTTGAACACCTTCCAG+GGG - chr6_3:86635333-86635352 None:intergenic 40.0%
GCAGCTTCAACAAAATCACA+TGG + chr6_3:86635569-86635588 Msa0962880:intron 40.0%
GAAAAGCAAAAGGGTAGGAT+TGG + chr6_3:86635700-86635719 Msa0962880:CDS 40.0%
! GGGTAGGATTGGAATTTTGT+TGG + chr6_3:86635711-86635730 Msa0962880:CDS 40.0%
TGAGCCTCTTACAAGATCAA+AGG + chr6_3:86635747-86635766 Msa0962880:CDS 40.0%
TCAGCCTTTGATCTTGTAAG+AGG - chr6_3:86635754-86635773 None:intergenic 40.0%
GGATACTCACCATAAACAAG+GGG - chr6_3:86636145-86636164 None:intergenic 40.0%
! CACAAGTTTTACTTCCTCCT+TGG - chr6_3:86636212-86636231 None:intergenic 40.0%
GGAGGAAGTAAAACTTGTGA+AGG + chr6_3:86636213-86636232 Msa0962880:CDS 40.0%
AAAAGTCCCTGGCTATCAAT+CGG + chr6_3:86636306-86636325 Msa0962880:CDS 40.0%
AAACTTACTCTTGGTCCAAC+AGG - chr6_3:86636703-86636722 None:intergenic 40.0%
TGGCTATACAATGTACCATG+GGG + chr6_3:86636850-86636869 Msa0962880:CDS 40.0%
!! ATTGATTTGTACAAGCCCCA+TGG - chr6_3:86636868-86636887 None:intergenic 40.0%
TTTGTAGGTATGGATGATCC+TGG + chr6_3:86637234-86637253 Msa0962880:intron 40.0%
TATCAAGCAATGACCAAGCA+TGG - chr6_3:86637371-86637390 None:intergenic 40.0%
TTAGGGTACACATCAAGGTT+TGG + chr6_3:86637405-86637424 Msa0962880:CDS 40.0%
CCAATATGCAGACATCTTAG+GGG - chr6_3:86637466-86637485 None:intergenic 40.0%
AGTGCCTGAAACAGTGCATT+TGG + chr6_3:86633298-86633317 Msa0962880:CDS 45.0%
ACAGTGCATTTGGATACTGG+AGG + chr6_3:86633308-86633327 Msa0962880:CDS 45.0%
CAGTGCATTTGGATACTGGA+GGG + chr6_3:86633309-86633328 Msa0962880:CDS 45.0%
! GATTTGGTCTGCCTGTTTGT+CGG + chr6_3:86634071-86634090 Msa0962880:intron 45.0%
TGGACCATGAGATTGAGAAC+CGG - chr6_3:86634703-86634722 None:intergenic 45.0%
AGGAGTAATGCCTGCAACAT+AGG - chr6_3:86634998-86635017 None:intergenic 45.0%
TCAACTCGAGAGCTAAAGGA+AGG - chr6_3:86635044-86635063 None:intergenic 45.0%
ATGGAGACAGAGTGAAGAAC+TGG + chr6_3:86635249-86635268 Msa0962880:CDS 45.0%
GCTGCTCTTGGCTATGATAA+TGG + chr6_3:86635299-86635318 Msa0962880:CDS 45.0%
!!! GATAATGGCTTTTTTGCCCC+TGG + chr6_3:86635314-86635333 Msa0962880:CDS 45.0%
ACTTCCTCCTTGGTGAACTT+TGG - chr6_3:86636202-86636221 None:intergenic 45.0%
CAAGCAAAACCAAAAGTCCC+TGG + chr6_3:86636295-86636314 Msa0962880:CDS 45.0%
!! GATTGATAGCCAGGGACTTT+TGG - chr6_3:86636307-86636326 None:intergenic 45.0%
! TCCAATCCGATTGATAGCCA+GGG - chr6_3:86636315-86636334 None:intergenic 45.0%
! TTCCAATCCGATTGATAGCC+AGG - chr6_3:86636316-86636335 None:intergenic 45.0%
! AGCATGGGTTAACTCATGCT+CGG + chr6_3:86637021-86637040 Msa0962880:intron 45.0%
TGTTGTGTCATGCAAACCCT+TGG - chr6_3:86637274-86637293 None:intergenic 45.0%
GGAGATTAGGGTACACATCA+AGG + chr6_3:86637400-86637419 Msa0962880:CDS 45.0%
CCCCTAAGATGTCTGCATAT+TGG + chr6_3:86637463-86637482 Msa0962880:CDS 45.0%
!! TATCAAATAATAATTTAAAA+AGG + chr6_3:86633885-86633904 Msa0962880:intron 5.0%
!!! TTTTTTTACAATAATTTTTT+TGG + chr6_3:86634240-86634259 Msa0962880:intron 5.0%
! AGAGGGTATGGCTAGCAAAG+AGG + chr6_3:86633394-86633413 Msa0962880:CDS 50.0%
! GAGGGTATGGCTAGCAAAGA+GGG + chr6_3:86633395-86633414 Msa0962880:CDS 50.0%
AGGGTCGTGGACCTAGTATT+TGG + chr6_3:86633414-86633433 Msa0962880:CDS 50.0%
GGGTCGTGGACCTAGTATTT+GGG + chr6_3:86633415-86633434 Msa0962880:CDS 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr6_3:86634595-86634614 Msa0962880:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr6_3:86634596-86634615 Msa0962880:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG + chr6_3:86634595-86634614 Msa0962880:intron 50.0%
CCAAGAGCAGCAACAACTCT+TGG - chr6_3:86635290-86635309 None:intergenic 50.0%
CCAAGAGTTGTTGCTGCTCT+TGG + chr6_3:86635287-86635306 Msa0962880:CDS 50.0%
!!! ATGGCTTTTTTGCCCCTGGA+AGG + chr6_3:86635318-86635337 Msa0962880:CDS 50.0%
TATGATGCACGGACACTCCT+CGG + chr6_3:86635901-86635920 Msa0962880:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr6_3:86636066-86636085 None:intergenic 50.0%
CAAGGGGATGAATGAACCTG+TGG - chr6_3:86636129-86636148 None:intergenic 50.0%
CAGGCTTCCAAAGTTCACCA+AGG + chr6_3:86636192-86636211 Msa0962880:CDS 50.0%
GCTTCCAAAGTTCACCAAGG+AGG + chr6_3:86636195-86636214 Msa0962880:CDS 50.0%
TCCCTGGCTATCAATCGGAT+TGG + chr6_3:86636311-86636330 Msa0962880:CDS 50.0%
! GCTAAGAATGGAGTGCCTGT+TGG + chr6_3:86636685-86636704 Msa0962880:intron 50.0%
ATGGCTAGCAAAGAGGGTCG+TGG + chr6_3:86633401-86633420 Msa0962880:CDS 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG + chr6_3:86634600-86634619 Msa0962880:intron 55.0%
ACGAGGACACACCTAATCCG+AGG - chr6_3:86635921-86635940 None:intergenic 55.0%
CACGACACGTGTCTAACACG+AGG - chr6_3:86635938-86635957 None:intergenic 55.0%
GCACGGACACTCCTCGGATT+AGG + chr6_3:86635907-86635926 Msa0962880:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 86633153 86637698 86633153 ID=Msa0962880;Name=Msa0962880
chr6_3 mRNA 86633153 86637698 86633153 ID=Msa0962880-mRNA-1;Parent=Msa0962880;Name=Msa0962880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=53|0.88|0.9|1|1|1|10|183|499
chr6_3 exon 86633153 86633458 86633153 ID=Msa0962880-mRNA-1:exon:15647;Parent=Msa0962880-mRNA-1
chr6_3 exon 86634322 86634380 86634322 ID=Msa0962880-mRNA-1:exon:15648;Parent=Msa0962880-mRNA-1
chr6_3 exon 86634659 86634734 86634659 ID=Msa0962880-mRNA-1:exon:15649;Parent=Msa0962880-mRNA-1
chr6_3 exon 86634830 86634901 86634830 ID=Msa0962880-mRNA-1:exon:15650;Parent=Msa0962880-mRNA-1
chr6_3 exon 86635007 86635094 86635007 ID=Msa0962880-mRNA-1:exon:15651;Parent=Msa0962880-mRNA-1
chr6_3 exon 86635208 86635460 86635208 ID=Msa0962880-mRNA-1:exon:15652;Parent=Msa0962880-mRNA-1
chr6_3 exon 86635700 86635815 86635700 ID=Msa0962880-mRNA-1:exon:15653;Parent=Msa0962880-mRNA-1
chr6_3 exon 86636132 86636336 86636132 ID=Msa0962880-mRNA-1:exon:15654;Parent=Msa0962880-mRNA-1
chr6_3 exon 86636838 86636940 86636838 ID=Msa0962880-mRNA-1:exon:15655;Parent=Msa0962880-mRNA-1
chr6_3 exon 86637241 86637698 86637241 ID=Msa0962880-mRNA-1:exon:15656;Parent=Msa0962880-mRNA-1
chr6_3 five_prime_UTR 86633153 86633205 86633153 ID=Msa0962880-mRNA-1:five_prime_utr;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86633206 86633458 86633206 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86634322 86634380 86634322 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86634659 86634734 86634659 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86634830 86634901 86634830 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86635007 86635094 86635007 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86635208 86635460 86635208 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86635700 86635815 86635700 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86636132 86636336 86636132 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86636838 86636940 86636838 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 CDS 86637241 86637515 86637241 ID=Msa0962880-mRNA-1:cds;Parent=Msa0962880-mRNA-1
chr6_3 three_prime_UTR 86637516 86637698 86637516 ID=Msa0962880-mRNA-1:three_prime_utr;Parent=Msa0962880-mRNA-1
Gene Sequence

>Msa0962880

ATGGTGATGTTGGATTCACAACAACATCAATGTTTCTATTACATGTTTTTCTTTTTCTTAGTTGTTCTTGTTAGTTCAGTTAATGGGGATGTAGTGCCTGAAACAGTGCATTTGGATACTGGAGGGTTGAGTAGAGATGTTTTTCCTAAAGGGTTTGTGTTTGGAGTTGCAACTTCTGCTTATCAAGTAGAGGGTATGGCTAGCAAAGAGGGTCGTGGACCTAGTATTTGGGATGTTTTCATCAAAAAACCTGGAATTGTCGCAAATAATGGCACAGGAGAAGTTTCTGTTGATCAATATCATCGCTACAAAGAAGATATAGATCTCATGGCAAAGCTAAATTTTGATCAATACCGGTTCTCAATCTCATGGTCCAGAATTTTTCCAAATGGAACTGGCAAAGTAAATTGGAAAGGTGTAGCATACTACAACAGATTGATCGATTACTTGCTCGAAAAGGGCATTACTCCTTATGCAAATCTCTACCATTATGACCTTCCTTTAGCTCTCGAGTTGAAATACAACGGTTTATTGAGCCGTAACGTTGTGAAAGATTTTGCGGATTATGCAGATTTTTGTTTCAAGACATATGGAGACAGAGTGAAGAACTGGATGACTTTCAATGAACCAAGAGTTGTTGCTGCTCTTGGCTATGATAATGGCTTTTTTGCCCCTGGAAGGTGTTCAAAAGAATATGGAAATTGTACAGCTGGAAATTCAGGAACTGAGCCTTATACTGTAGCTCACAATTTGATATTGTCACATGCTGCTGCTGCTCAAAGATATAGAGAGAAATACCAAGAAAAGCAAAAGGGTAGGATTGGAATTTTGTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGATAACTACGCTGCTCAAAGAGCTAGAGATTTTCATATTGGCTGGTTCATTCATCCCCTTGTTTATGGTGAGTATCCAAGAACTATGCAAAATATTGTTGGGAACAGGCTTCCAAAGTTCACCAAGGAGGAAGTAAAACTTGTGAAGGGCTCAATTGATTTTGTTGGTATCAATCAATATACTACTTACTACATGTATGATCCTCATCAAGCAAAACCAAAAGTCCCTGGCTATCAATCGGATTGGAATGCATATTCATATTGGCTATACAATGTACCATGGGGCTTGTACAAATCAATAATGTACATCAAGGAGCATTATAAAAACCCAACTATGTTCTTATCTGAAAATGGTATGGATGATCCTGGTAATGTAACATTTTCCAAGGGTTTGCATGACACAACAAGAATAAACTATTACAAAGGCTATTTGACTCAACTAAAGAAAGCTATAGATGATGGAGCAAATGTATTTGGATACCATGCTTGGTCATTGCTTGATAACTTTGAATGGAGATTAGGGTACACATCAAGGTTTGGTATTGTCTATGTTGACTTCAAAACTCTCAAGAGAACCCCTAAGATGTCTGCATATTGGTTCAAGCAGCTACTTACCAAAAAGAAGTAA
Protein sequence

>Msa0962880

MVMLDSQQHQCFYYMFFFFLVVLVSSVNGDVVPETVHLDTGGLSRDVFPKGFVFGVATSAYQVEGMASKEGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMAKLNFDQYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYLLEKGITPYANLYHYDLPLALELKYNGLLSRNVVKDFADYADFCFKTYGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYTVAHNLILSHAAAAQRYREKYQEKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHIGWFIHPLVYGEYPRTMQNIVGNRLPKFTKEEVKLVKGSIDFVGINQYTTYYMYDPHQAKPKVPGYQSDWNAYSYWLYNVPWGLYKSIMYIKEHYKNPTMFLSENGMDDPGNVTFSKGLHDTTRINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAYWFKQLLTKKK*