AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1018720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018720 MtrunA17_Chr7g0234131 89.011 91 10 0 34 124 448 538 3.80e-55 179
Msa1018720 MtrunA17_Chr7g0234111 81.818 88 16 0 34 121 447 534 6.22e-47 158
Msa1018720 MtrunA17_Chr7g0234091 78.409 88 19 0 34 121 447 534 3.82e-45 153
Msa1018720 MtrunA17_Chr7g0236741 85.000 60 9 0 65 124 9 68 1.08e-32 109
Msa1018720 MtrunA17_Chr7g0227591 70.370 54 16 0 66 119 13 66 1.01e-24 89.4
Msa1018720 MtrunA17_Chr4g0043091 45.455 77 42 0 42 118 425 501 2.97e-21 87.8
Msa1018720 MtrunA17_Chr5g0418861 38.824 85 51 1 36 119 7 91 9.27e-20 77.4
Msa1018720 MtrunA17_Chr4g0033201 42.169 83 48 0 36 118 428 510 8.07e-18 77.8
Msa1018720 MtrunA17_Chr4g0033191 39.759 83 50 0 36 118 435 517 1.08e-17 77.8
Msa1018720 MtrunA17_Chr2g0329191 38.554 83 51 0 36 118 425 507 1.88e-17 77.0
Msa1018720 MtrunA17_Chr2g0301231 38.554 83 51 0 36 118 308 390 3.20e-17 75.9
Msa1018720 MtrunA17_Chr4g0042171 37.500 88 54 1 36 122 415 502 1.29e-16 74.7
Msa1018720 MtrunA17_Chr6g0482081 38.554 83 51 0 36 118 429 511 2.20e-16 73.9
Msa1018720 MtrunA17_Chr6g0482131 36.145 83 53 0 36 118 428 510 2.24e-16 73.9
Msa1018720 MtrunA17_Chr6g0482071 37.500 88 55 0 36 123 429 516 2.81e-16 73.6
Msa1018720 MtrunA17_Chr5g0430451 36.145 83 53 0 36 118 414 496 7.71e-16 72.4
Msa1018720 MtrunA17_Chr4g0033271 38.554 83 51 0 36 118 427 509 1.21e-15 71.6
Msa1018720 MtrunA17_Chr4g0074551 37.778 90 50 2 34 118 434 522 1.60e-15 71.2
Msa1018720 MtrunA17_Chr3g0090111 32.927 82 55 0 37 118 398 479 2.71e-15 70.9
Msa1018720 MtrunA17_Chr4g0033331 36.782 87 55 0 36 122 431 517 3.12e-15 70.5
Msa1018720 MtrunA17_Chr4g0006111 34.146 82 54 0 37 118 442 523 5.43e-15 70.1
Msa1018720 MtrunA17_Chr3g0087201 39.726 73 44 0 46 118 270 342 5.84e-15 69.3
Msa1018720 MtrunA17_Chr4g0033231 33.735 83 55 0 36 118 409 491 7.60e-15 69.3
Msa1018720 MtrunA17_Chr3g0090131 34.146 82 54 0 37 118 401 482 1.70e-14 68.6
Msa1018720 MtrunA17_Chr1g0195611 39.474 76 45 1 44 118 412 487 1.80e-14 68.6
Msa1018720 MtrunA17_Chr4g0033261 34.940 83 54 0 36 118 409 491 1.84e-14 68.6
Msa1018720 MtrunA17_Chr2g0329321 33.735 83 55 0 36 118 404 486 2.81e-14 67.8
Msa1018720 MtrunA17_Chr4g0074561 37.975 79 48 1 40 118 433 510 3.17e-14 67.8
Msa1018720 MtrunA17_Chr4g0033341 37.805 82 51 0 37 118 460 541 3.18e-14 67.8
Msa1018720 MtrunA17_Chr4g0033401 35.632 87 56 0 36 122 426 512 3.19e-14 67.8
Msa1018720 MtrunA17_Chr2g0288071 39.474 76 45 1 44 119 467 541 3.45e-14 67.8
Msa1018720 MtrunA17_Chr5g0428831 39.189 74 44 1 46 118 415 488 4.06e-14 67.4
Msa1018720 MtrunA17_Chr2g0288021 36.842 76 47 1 44 119 434 508 4.36e-14 67.4
Msa1018720 MtrunA17_Chr3g0088441 33.735 83 55 0 36 118 430 512 1.01e-13 66.2
Msa1018720 MtrunA17_Chr2g0329201 32.530 83 56 0 36 118 423 505 2.13e-13 65.5
Msa1018720 MtrunA17_Chr4g0033311 32.927 82 55 0 37 118 432 513 3.04e-13 65.1
Msa1018720 MtrunA17_Chr7g0242691 38.158 76 46 1 44 118 418 493 3.57e-13 64.7
Msa1018720 MtrunA17_Chr4g0006971 36.905 84 49 2 44 123 414 497 4.29e-13 64.3
Msa1018720 MtrunA17_Chr4g0033321 33.333 84 56 0 36 119 425 508 4.42e-13 64.3
Msa1018720 MtrunA17_Chr3g0087271 39.189 74 45 0 45 118 435 508 9.86e-13 63.5
Msa1018720 MtrunA17_Chr7g0242681 39.474 76 44 2 44 118 425 499 1.24e-12 63.2
Msa1018720 MtrunA17_Chr4g0010501 36.000 75 48 0 44 118 418 492 1.69e-12 62.8
Msa1018720 MtrunA17_Chr4g0006131 28.125 96 68 1 29 123 409 504 4.46e-12 61.6
Msa1018720 MtrunA17_Chr2g0317841 36.000 75 47 1 44 118 430 503 1.32e-11 60.1
Msa1018720 MtrunA17_Chr2g0317821 36.000 75 47 1 44 118 430 503 2.18e-11 59.7
Msa1018720 MtrunA17_Chr6g0482951 38.158 76 46 1 44 119 437 511 2.56e-11 59.3
Msa1018720 MtrunA17_Chr6g0482941 38.158 76 46 1 44 119 437 511 3.17e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018720 AT1G61820.3 40.964 83 48 1 36 118 284 365 2.95e-18 79.3
Msa1018720 AT1G61820.1 40.964 83 48 1 36 118 423 504 4.88e-18 79.0
Msa1018720 AT5G44640.1 43.421 76 43 0 44 119 427 502 1.59e-17 77.4
Msa1018720 AT2G44470.3 40.260 77 45 1 44 119 430 506 7.60e-17 75.5
Msa1018720 AT1G61810.5 41.333 75 43 1 44 118 334 407 2.93e-16 73.9
Msa1018720 AT1G61810.1 41.333 75 43 1 44 118 434 507 3.19e-16 73.9
Msa1018720 AT2G44460.2 39.474 76 45 1 44 118 283 358 4.77e-16 73.2
Msa1018720 AT2G44490.1 38.372 86 52 1 37 121 410 495 4.95e-16 73.2
Msa1018720 AT2G44460.1 39.474 76 45 1 44 118 429 504 6.16e-16 73.2
Msa1018720 AT2G44450.2 41.333 75 44 0 44 118 275 349 8.84e-16 72.4
Msa1018720 AT2G44450.1 41.333 75 44 0 44 118 426 500 1.51e-15 72.0
Msa1018720 AT3G60140.1 40.789 76 44 1 44 118 427 502 1.75e-15 71.6
Msa1018720 AT5G42260.1 42.254 71 41 0 44 114 427 497 2.15e-15 71.6
Msa1018720 AT1G26560.1 39.744 78 46 1 42 118 429 506 2.56e-15 71.2
Msa1018720 AT5G36890.1 34.118 85 56 0 37 121 398 482 3.50e-15 70.9
Msa1018720 AT5G36890.2 34.118 85 56 0 37 121 398 482 3.66e-15 70.9
Msa1018720 AT1G75940.1 42.105 76 43 1 44 118 442 517 5.14e-15 70.5
Msa1018720 AT4G27820.2 39.474 76 45 1 44 118 322 397 9.93e-15 69.3
Msa1018720 AT4G27820.3 39.474 76 45 1 44 118 322 397 9.93e-15 69.3
Msa1018720 AT4G21760.1 37.333 75 46 1 44 118 438 511 1.38e-14 69.3
Msa1018720 AT4G21760.2 37.333 75 46 1 44 118 448 521 1.43e-14 68.9
Msa1018720 AT3G60130.2 40.000 75 45 0 44 118 374 448 1.48e-14 68.9
Msa1018720 AT3G60130.3 40.000 75 45 0 44 118 363 437 1.50e-14 68.9
Msa1018720 AT4G27820.1 39.474 76 45 1 44 118 407 482 1.87e-14 68.9
Msa1018720 AT3G60130.1 40.000 75 45 0 44 118 426 500 2.56e-14 68.6
Msa1018720 AT5G54570.2 34.524 84 54 1 36 118 325 408 2.65e-14 68.2
Msa1018720 AT5G54570.1 34.524 84 54 1 36 118 422 505 3.34e-14 68.2
Msa1018720 AT5G24550.1 38.158 76 46 1 44 118 434 509 5.64e-14 67.4
Msa1018720 AT4G27830.2 38.158 76 46 1 44 118 321 396 7.39e-14 67.0
Msa1018720 AT4G27830.1 38.158 76 46 1 44 118 409 484 1.25e-13 66.2
Msa1018720 AT2G25630.1 40.000 75 45 0 44 118 409 483 1.27e-13 66.2
Msa1018720 AT3G60120.1 39.474 76 45 1 44 118 414 489 1.30e-13 66.2
Msa1018720 AT1G52400.3 38.667 75 45 1 45 118 441 515 1.43e-13 66.2
Msa1018720 AT1G52400.1 38.667 75 45 1 45 118 441 515 1.43e-13 66.2
Msa1018720 AT3G09260.1 38.667 75 45 1 46 119 437 511 2.76e-13 65.5
Msa1018720 AT1G66270.2 40.000 75 44 1 46 119 435 509 7.27e-13 64.3
Msa1018720 AT1G66270.1 40.000 75 44 1 46 119 437 511 7.56e-13 64.3
Msa1018720 AT3G21370.1 36.842 76 47 1 44 118 436 511 8.75e-13 63.9
Msa1018720 AT1G02850.5 36.842 76 47 1 44 118 433 508 9.17e-13 63.9
Msa1018720 AT1G66280.1 40.541 74 43 1 46 118 437 510 1.12e-12 63.5
Msa1018720 AT2G44480.5 34.066 91 55 1 34 119 213 303 1.29e-12 63.2
Msa1018720 AT1G45191.6 38.667 75 45 1 45 118 420 494 1.31e-12 63.5
Msa1018720 AT5G24540.1 35.526 76 48 1 44 118 434 509 1.32e-12 63.5
Msa1018720 AT1G45191.1 38.667 75 45 1 45 118 432 506 1.33e-12 63.5
Msa1018720 AT1G45191.2 38.667 75 45 1 45 118 415 489 1.37e-12 63.5
Msa1018720 AT1G02850.1 36.842 76 47 1 44 118 383 458 1.43e-12 63.5
Msa1018720 AT1G02850.2 36.842 76 47 1 44 118 410 485 1.51e-12 63.2
Msa1018720 AT1G45191.4 38.667 75 45 1 45 118 409 483 1.53e-12 63.2
Msa1018720 AT3G18070.1 35.897 78 49 1 44 121 423 499 1.55e-12 63.2
Msa1018720 AT2G44480.2 34.066 91 55 1 34 119 317 407 1.81e-12 63.2
Msa1018720 AT3G62750.6 38.158 76 46 1 44 118 313 388 2.01e-12 62.8
Msa1018720 AT3G62750.5 38.158 76 46 1 44 118 313 388 2.01e-12 62.8
Msa1018720 AT2G44480.3 34.066 91 55 1 34 119 450 540 2.32e-12 62.8
Msa1018720 AT2G44480.1 34.066 91 55 1 34 119 419 509 2.37e-12 62.8
Msa1018720 AT5G28510.1 32.927 82 54 1 39 119 439 520 2.57e-12 62.8
Msa1018720 AT3G18070.7 35.443 79 50 1 44 122 234 311 3.20e-12 62.0
Msa1018720 AT3G62750.1 38.158 76 46 1 44 118 398 473 3.21e-12 62.4
Msa1018720 AT3G62750.2 38.158 76 46 1 44 118 424 499 3.49e-12 62.4
Msa1018720 AT3G18070.3 35.443 79 50 1 44 122 417 494 4.42e-12 62.0
Msa1018720 AT3G18070.2 35.443 79 50 1 44 122 346 423 4.71e-12 62.0
Msa1018720 AT1G60090.1 37.975 79 48 1 45 122 415 493 9.73e-12 60.8
Msa1018720 AT1G60090.2 37.975 79 48 1 45 122 408 486 1.02e-11 60.8
Msa1018720 AT3G62740.1 36.842 76 47 1 44 118 403 478 1.93e-11 60.1
Msa1018720 AT1G02850.4 36.364 77 47 2 44 118 433 509 3.00e-11 59.7
Msa1018720 AT2G32860.2 33.333 81 53 1 39 118 491 571 3.73e-11 59.3
Msa1018720 AT4G22100.1 38.667 75 45 1 45 118 408 482 3.96e-11 59.3
Msa1018720 AT2G32860.1 33.333 81 53 1 39 118 490 570 4.39e-11 59.3
Msa1018720 AT1G51470.1 32.895 76 51 0 44 119 435 510 6.19e-11 58.5
Msa1018720 AT1G47600.2 32.895 76 51 0 44 119 434 509 6.82e-11 58.5
Msa1018720 AT1G47600.1 32.895 76 51 0 44 119 435 510 6.89e-11 58.5

Find 110 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTTACATCACTGAAAA+TGG 0.207133 7_1:-39182386 Msa1018720:CDS
GTAGTAATCTTAGTTCTATT+TGG 0.238425 7_1:+39183046 None:intergenic
GCATTTCAAGAGGGAGAAAT+TGG 0.239700 7_1:-39183475 Msa1018720:five_prime_UTR
TGTTCGTCTTTCAATGGATT+TGG 0.245425 7_1:+39182239 None:intergenic
TGTATAGATGGAACCTTAAA+AGG 0.256228 7_1:-39184387 Msa1018720:intron
TAACAAGCAGATGCTTATTC+TGG 0.258919 7_1:-39187809 Msa1018720:intron
CAAGATTGCAAGAATGGTTT+TGG 0.275978 7_1:+39190121 None:intergenic
AAAGGAAGTACAGACTTTAT+TGG 0.307324 7_1:-39183106 Msa1018720:five_prime_UTR
TCCCTAGATTCCCTATGATT+TGG 0.311293 7_1:-39190342 Msa1018720:five_prime_UTR
TTAGCTCTTCAACAAAATAT+TGG 0.312168 7_1:-39184146 Msa1018720:five_prime_UTR
AAAACAATACTCCAAATCAT+AGG 0.312318 7_1:+39190331 None:intergenic
TACTTACTTAATTGTTGCTT+TGG 0.328890 7_1:+39182181 None:intergenic
TTATACATAGCTTGGAGTTC+CGG 0.337255 7_1:+39183887 None:intergenic
TACCGACAAACACAGCTAAA+TGG 0.341207 7_1:-39181213 Msa1018720:CDS
AAGGAAGTACAGACTTTATT+GGG 0.346048 7_1:-39183105 Msa1018720:five_prime_UTR
CTCCAAATCATAGGGAATCT+AGG 0.346688 7_1:+39190340 None:intergenic
CGATGGATATTCTAAACATA+TGG 0.349115 7_1:-39181275 Msa1018720:CDS
GTTCGTCTTTCAATGGATTT+GGG 0.349241 7_1:+39182240 None:intergenic
ACAATATATTAGTTGGTCAT+TGG 0.379206 7_1:+39181041 None:intergenic
ATCCTCAGGCTTTGAACTAT+AGG 0.387607 7_1:+39183423 None:intergenic
CTAAATGTTGTTATGTTGAT+TGG 0.389110 7_1:-39181158 Msa1018720:exon
ATGAAGAATCAAACTTAAAG+TGG 0.389543 7_1:+39181106 None:intergenic
AAAGACTAACAGATTTCAAA+TGG 0.396482 7_1:-39183387 Msa1018720:five_prime_UTR
AAGAAATTATATAATCCTTC+GGG 0.397214 7_1:+39182440 None:intergenic
CAAGAAATTATATAATCCTT+CGG 0.404534 7_1:+39182439 None:intergenic
TACCATTTAGCTGTGTTTGT+CGG 0.406392 7_1:+39181211 None:intergenic
TCCTCAGGCTTTGAACTATA+GGG 0.406947 7_1:+39183424 None:intergenic
AAGCGACAAGATTGCAAGAA+TGG 0.419932 7_1:+39190115 None:intergenic
CACGAGTAACATTGTGTAGT+TGG 0.422919 7_1:-39190281 Msa1018720:five_prime_UTR
GTTCGATGTTCGTCTTTCAA+TGG 0.424862 7_1:+39182233 None:intergenic
AAACTATTTGACACTTGATT+CGG 0.425725 7_1:-39181185 Msa1018720:CDS
TGAGCATTACAAGAGATATA+AGG 0.430977 7_1:-39187762 Msa1018720:intron
GCTTTCCAACATTCGGGTCC+AGG 0.435440 7_1:-39190087 Msa1018720:five_prime_UTR
AGACATAGTTACAACCATAT+TGG 0.442280 7_1:+39182465 None:intergenic
ATGGTGATCGAGTGAAATAT+TGG 0.443015 7_1:-39183925 Msa1018720:five_prime_UTR
GTAATAGACAATATATTAGT+TGG 0.447179 7_1:+39181034 None:intergenic
TGTTGGAACTTCAGCCCCTC+AGG 0.449481 7_1:-39189476 Msa1018720:intron
CGTGGGAATGATGTCCGGTT+TGG 0.450598 7_1:+39189514 None:intergenic
GATCACCATATGTTTCGAAT+AGG 0.457073 7_1:+39183939 None:intergenic
TTGGTCTCAACTTGGAGAAA+AGG 0.457228 7_1:-39181139 Msa1018720:three_prime_UTR
CTTACAGATTCTCCATATGT+TGG 0.458794 7_1:-39185518 Msa1018720:five_prime_UTR
AAGACTAACAGATTTCAAAT+GGG 0.467207 7_1:-39183386 Msa1018720:five_prime_UTR
TGAGCAGCATCCACATCCTC+AGG 0.468802 7_1:+39183409 None:intergenic
ATTCATCAAGCTTTCCAAAC+CGG 0.469139 7_1:-39189528 Msa1018720:five_prime_UTR
CATGAAGGAGGAAGAGGGCT+TGG 0.471579 7_1:-39189352 Msa1018720:five_prime_UTR
TAGTTCAAAGCCTGAGGATG+TGG 0.472759 7_1:-39183419 Msa1018720:five_prime_UTR
CCATGTAATTATACATAGCT+TGG 0.476657 7_1:+39183879 None:intergenic
GATGGATATTCTAAACATAT+GGG 0.476851 7_1:-39181274 Msa1018720:CDS
AAATGCTCAAACCTTGTGCC+TGG 0.484270 7_1:+39190069 None:intergenic
AAGACCAACGTAATACAGAT+TGG 0.490162 7_1:-39189598 Msa1018720:five_prime_UTR
TATTACTCTACTCCAACATA+TGG 0.490769 7_1:+39185506 None:intergenic
GCTCTTCAACAAAATATTGG+CGG 0.493169 7_1:-39184143 Msa1018720:five_prime_UTR
AGTGATGGCGTAAACGTTCG+TGG 0.494004 7_1:-39181337 Msa1018720:CDS
GAGCTCCTATTCGAAACATA+TGG 0.495479 7_1:-39183944 Msa1018720:five_prime_UTR
TCCAAATCATAGGGAATCTA+GGG 0.495988 7_1:+39190341 None:intergenic
TTTACATCACTGAAAATGGT+TGG 0.498482 7_1:-39182382 Msa1018720:intron
GTAACATTGTGTAGTTGGAT+TGG 0.507899 7_1:-39190276 Msa1018720:five_prime_UTR
AGCTACGTGGGAATGATGTC+CGG 0.515458 7_1:+39189509 None:intergenic
TTCTCCATCTAAGAAAACTC+TGG 0.516160 7_1:+39190173 None:intergenic
GTGCAACGATTGAAGAAACT+TGG 0.522017 7_1:-39185549 Msa1018720:five_prime_UTR
CCAAGCTATGTATAATTACA+TGG 0.523068 7_1:-39183879 Msa1018720:five_prime_UTR
AGAGGGCTTGGTATATTTGA+CGG 0.523788 7_1:-39189340 Msa1018720:intron
GGATCTCATGAAGGAGGAAG+AGG 0.525860 7_1:-39189358 Msa1018720:five_prime_UTR
AAACAATACTCCAAATCATA+GGG 0.528440 7_1:+39190332 None:intergenic
AACATTCGGGTCCAGGCACA+AGG 0.536095 7_1:-39190080 Msa1018720:intron
AAAGGAGGTATAAACAAAGA+AGG 0.536911 7_1:-39184369 Msa1018720:five_prime_UTR
TATAATTACATGGACAATGT+AGG 0.537414 7_1:-39183869 Msa1018720:five_prime_UTR
AAGTGCAGGATAGTCACAAA+AGG 0.542923 7_1:+39184179 None:intergenic
TATGTTGATTGGTCTCAACT+TGG 0.548685 7_1:-39181147 Msa1018720:three_prime_UTR
AATGAGAAAGAACTGTTGAA+AGG 0.550913 7_1:-39183124 Msa1018720:five_prime_UTR
GATGCCTTGGCTGTTTCAGA+AGG 0.551991 7_1:-39183010 Msa1018720:intron
CGTTGAGATGGTTTCTCCGA+GGG 0.553604 7_1:+39189852 None:intergenic
GGATTTGGGATATTGAAAGA+AGG 0.554731 7_1:+39182254 None:intergenic
ACGTGACTTATCTACTTCAC+AGG 0.561889 7_1:-39189832 Msa1018720:intron
AAAATAATGAGAAAGCTAGT+GGG 0.562146 7_1:-39183172 Msa1018720:five_prime_UTR
CTTGTATAGCTTTGAAACTG+TGG 0.562671 7_1:+39183763 None:intergenic
ATTGAAGGTGGATCTCATGA+AGG 0.567066 7_1:-39189367 Msa1018720:five_prime_UTR
AGGAATACTTCTACTTCCCT+CGG 0.567485 7_1:-39189868 Msa1018720:five_prime_UTR
GTAGATAAGTCACGTTGAGA+TGG 0.567628 7_1:+39189840 None:intergenic
TTCTCCAATCTGTATTACGT+TGG 0.568300 7_1:+39189594 None:intergenic
CAATGTAGGTCATTATTCTA+CGG 0.570204 7_1:-39183855 Msa1018720:five_prime_UTR
TTGGACTACATTCAATGAGC+CGG 0.573984 7_1:-39183906 Msa1018720:five_prime_UTR
CTCAACTTGGAGAAAAGGCA+AGG 0.581677 7_1:-39181134 Msa1018720:three_prime_UTR
TTGTGACTGTAGATTGAAGG+TGG 0.582632 7_1:-39189379 Msa1018720:intron
TAACAGATTTCAAATGGGGA+TGG 0.588010 7_1:-39183381 Msa1018720:intron
GGATAATCTCCGTTGAACAA+TGG 0.588982 7_1:+39183196 None:intergenic
TGAAGAATCAAACTTAAAGT+GGG 0.591619 7_1:+39181107 None:intergenic
CTAATGGATAGTCAAAGTGC+AGG 0.594493 7_1:+39184165 None:intergenic
TTTACCTTCTGAAACAGCCA+AGG 0.602078 7_1:+39183006 None:intergenic
TTTGGTAGCATTTATATGTG+CGG 0.602905 7_1:+39182199 None:intergenic
TTGTGCCTGGACCCGAATGT+TGG 0.603731 7_1:+39190082 None:intergenic
TGTCATTGTCAAAGTAGTGT+CGG 0.616382 7_1:+39190302 None:intergenic
AACGTAATACAGATTGGAGA+AGG 0.625593 7_1:-39189592 Msa1018720:five_prime_UTR
GATCTCATGAAGGAGGAAGA+GGG 0.629006 7_1:-39189357 Msa1018720:five_prime_UTR
TTGGCATAGGCATTTCAAGA+GGG 0.629474 7_1:-39183484 Msa1018720:intron
TCCCTATAGTTCAAAGCCTG+AGG 0.632973 7_1:-39183425 Msa1018720:five_prime_UTR
ATCAACGAATTACTCAACAA+TGG 0.634260 7_1:-39184324 Msa1018720:intron
AAATAATGAGAAAGCTAGTG+GGG 0.638767 7_1:-39183171 Msa1018720:five_prime_UTR
AGACTAACAGATTTCAAATG+GGG 0.641684 7_1:-39183385 Msa1018720:five_prime_UTR
ATGGATATTCTAAACATATG+GGG 0.647267 7_1:-39181273 Msa1018720:CDS
GAAGGTGGATCTCATGAAGG+AGG 0.648268 7_1:-39189364 Msa1018720:five_prime_UTR
TGTAACTATGTCTACCCCGA+AGG 0.653655 7_1:-39182455 Msa1018720:CDS
TCAACTTGGAGAAAAGGCAA+GGG 0.664287 7_1:-39181133 Msa1018720:three_prime_UTR
TGTTGGAGTAGAGTAATACC+AGG 0.665387 7_1:-39185501 Msa1018720:intron
CATATGTTTAGAATATCCAT+CGG 0.669960 7_1:+39181276 None:intergenic
TTTGGCATAGGCATTTCAAG+AGG 0.676014 7_1:-39183485 Msa1018720:intron
ATAGATGGAACCTTAAAAGG+AGG 0.682953 7_1:-39184384 Msa1018720:intron
TGTAGGTCATTATTCTACGG+AGG 0.695859 7_1:-39183852 Msa1018720:five_prime_UTR
ACGTTGAGATGGTTTCTCCG+AGG 0.696524 7_1:+39189851 None:intergenic
AGAAATTATATAATCCTTCG+GGG 0.724914 7_1:+39182441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATTTACTTTACA+TGG + chr7_1:39181400-39181419 None:intergenic 10.0%
!! GTTATTTAAATGTAAAAAAT+TGG - chr7_1:39182779-39182798 Msa1018720:five_prime_UTR 10.0%
!!! TATAATCTTTTAGTTTTTTT+TGG - chr7_1:39183334-39183353 Msa1018720:intron 10.0%
!! TAAAAAAAAAAAGGAAAAAA+AGG + chr7_1:39183659-39183678 None:intergenic 10.0%
!! TAATTGTAGTAAAAAAAAAA+AGG + chr7_1:39183668-39183687 None:intergenic 10.0%
!!! TTTATTTGTTTTAATTTGAA+TGG - chr7_1:39185781-39185800 Msa1018720:intron 10.0%
!!! TTTTATTTCTAAAAATTAGT+AGG - chr7_1:39186038-39186057 Msa1018720:intron 10.0%
!!! TTTTGTTAAAATCAAATTTT+AGG - chr7_1:39187379-39187398 Msa1018720:intron 10.0%
!! ATTTAAATAATTGTATACAA+AGG - chr7_1:39188409-39188428 Msa1018720:intron 10.0%
!!! TATTAAGAATGATATTTTTT+AGG - chr7_1:39188628-39188647 Msa1018720:intron 10.0%
!!! ATTAAGAATGATATTTTTTA+GGG - chr7_1:39188629-39188648 Msa1018720:intron 10.0%
!!! TATTAACTTTTCAAATTATA+AGG + chr7_1:39189225-39189244 None:intergenic 10.0%
!!! TATCTAATTTTTATTTTCTA+AGG - chr7_1:39189243-39189262 Msa1018720:intron 10.0%
!! AAAATATATGTAATATCAAA+AGG - chr7_1:39189877-39189896 Msa1018720:intron 10.0%
!!! TTTTTGTTATAAATAAAATG+CGG - chr7_1:39190295-39190314 Msa1018720:five_prime_UTR 10.0%
!! GATAAAATAGTATAATTGAA+TGG + chr7_1:39182275-39182294 None:intergenic 15.0%
!! CTAATAGAAAAATTGATAAA+CGG - chr7_1:39182420-39182439 Msa1018720:CDS 15.0%
!! TAATAGAAAAATTGATAAAC+GGG - chr7_1:39182421-39182440 Msa1018720:CDS 15.0%
!!! CTTTTTATTTTTTTTTATGG+TGG - chr7_1:39182540-39182559 Msa1018720:intron 15.0%
!! AAATAATTAACCACTAAAAT+TGG + chr7_1:39182694-39182713 None:intergenic 15.0%
!!! TTTTTTTTTTCTATTCATCT+CGG - chr7_1:39182711-39182730 Msa1018720:intron 15.0%
!! AGAAGAAAAAAAAAACTTAA+AGG + chr7_1:39182869-39182888 None:intergenic 15.0%
!! TTATTTAACCATAACAATTT+GGG - chr7_1:39182910-39182929 Msa1018720:intron 15.0%
!! GTTACAATTAAAAAACTTAA+AGG - chr7_1:39182970-39182989 Msa1018720:intron 15.0%
!! TATATACTACATATTCTATA+AGG + chr7_1:39183318-39183337 None:intergenic 15.0%
!!! TTCTTATTTTGATAAGAATA+TGG - chr7_1:39183778-39183797 Msa1018720:five_prime_UTR 15.0%
!! TTATTTCATGTGTAATTTAA+GGG + chr7_1:39184890-39184909 None:intergenic 15.0%
!! ATTATTTCATGTGTAATTTA+AGG + chr7_1:39184891-39184910 None:intergenic 15.0%
!!! TTATTCGCAAAATTTTATTT+TGG + chr7_1:39185124-39185143 None:intergenic 15.0%
!! TTAATTAATAAGTTACTCTT+TGG + chr7_1:39185940-39185959 None:intergenic 15.0%
!! AAAGAGTAACTTATTAATTA+AGG - chr7_1:39185939-39185958 Msa1018720:intron 15.0%
!! AAGAGTAACTTATTAATTAA+GGG - chr7_1:39185940-39185959 Msa1018720:intron 15.0%
!!! AATTTTTTTTCTCTTCATTA+GGG + chr7_1:39186094-39186113 None:intergenic 15.0%
!!! TAATTTTTTTTCTCTTCATT+AGG + chr7_1:39186095-39186114 None:intergenic 15.0%
!!! TATTTTTCTTTACATAAAGA+TGG - chr7_1:39186122-39186141 Msa1018720:intron 15.0%
!! AAAATTACATGTTACATATA+TGG - chr7_1:39187654-39187673 Msa1018720:intron 15.0%
!! ATTATTACTATTACGTTAAT+CGG + chr7_1:39187756-39187775 None:intergenic 15.0%
!!! TTTTTCTATATAGTTTTCTA+TGG - chr7_1:39188083-39188102 Msa1018720:intron 15.0%
!!! TTAAGAATGATATTTTTTAG+GGG - chr7_1:39188630-39188649 Msa1018720:intron 15.0%
!!! TTTTTTTATCAACTAATGTA+GGG - chr7_1:39189310-39189329 Msa1018720:intron 15.0%
!! TAAAAACTTTCATACAAAAA+AGG + chr7_1:39190358-39190377 None:intergenic 15.0%
!! TATTATAATGTTACTATTGC+AGG - chr7_1:39181479-39181498 Msa1018720:intron 20.0%
!! TGGTAAAAACATAAAGAAAA+AGG + chr7_1:39182255-39182274 None:intergenic 20.0%
!! TCATAATTGAACACTATTAT+AGG - chr7_1:39182357-39182376 Msa1018720:intron 20.0%
!!! CGTTTATCAATTTTTCTATT+AGG + chr7_1:39182422-39182441 None:intergenic 20.0%
!!! TAGTACATTTTATGTTTAAC+TGG + chr7_1:39182468-39182487 None:intergenic 20.0%
!! TAAATAACTTAAAGAACCTA+TGG + chr7_1:39182767-39182786 None:intergenic 20.0%
!! GTACGAGAAAAAAAATTTAA+AGG + chr7_1:39182806-39182825 None:intergenic 20.0%
!! AATAACTTAAAGGATCTAAT+CGG + chr7_1:39182895-39182914 None:intergenic 20.0%
!! GTTATGGTTAAATAACTTAA+AGG + chr7_1:39182905-39182924 None:intergenic 20.0%
!! GTTATTTAACCATAACAATT+TGG - chr7_1:39182909-39182928 Msa1018720:intron 20.0%
!! TATTTAACCATAACAATTTG+GGG - chr7_1:39182911-39182930 Msa1018720:intron 20.0%
!! GTGTTACAAAAAATACTTAA+AGG - chr7_1:39182999-39183018 Msa1018720:intron 20.0%
!! CTAACGATTAAATAAATTCA+AGG - chr7_1:39183023-39183042 Msa1018720:five_prime_UTR 20.0%
!! GAAATAAACTTAAATAACCA+TGG - chr7_1:39183059-39183078 Msa1018720:five_prime_UTR 20.0%
!! GTTGTAATTAGATAACTTAA+AGG - chr7_1:39183083-39183102 Msa1018720:five_prime_UTR 20.0%
!!! AGCCTAGTTTTTTTTTTTTA+AGG - chr7_1:39183121-39183140 Msa1018720:five_prime_UTR 20.0%
!!! GCCTAGTTTTTTTTTTTTAA+GGG - chr7_1:39183122-39183141 Msa1018720:five_prime_UTR 20.0%
!! ACCCTTAAAAAAAAAAAACT+AGG + chr7_1:39183126-39183145 None:intergenic 20.0%
!!! TTTTTTTTAAGGGTTGAAAT+AGG - chr7_1:39183132-39183151 Msa1018720:five_prime_UTR 20.0%
!!! TCAAAATATTTTAGTCTCTA+TGG - chr7_1:39183857-39183876 Msa1018720:five_prime_UTR 20.0%
!! AAAAATGAGATTGTTAAAAG+AGG - chr7_1:39184163-39184182 Msa1018720:five_prime_UTR 20.0%
!! AAAATGAGATTGTTAAAAGA+GGG - chr7_1:39184164-39184183 Msa1018720:five_prime_UTR 20.0%
!!! ATACTTCTTTTCATTTTGTA+AGG - chr7_1:39184552-39184571 Msa1018720:intron 20.0%
!!! CCATTTGAAATTTTATACAT+AGG + chr7_1:39184584-39184603 None:intergenic 20.0%
!! CCTATGTATAAAATTTCAAA+TGG - chr7_1:39184581-39184600 Msa1018720:intron 20.0%
!! TGCATATAAAATAGAATAAG+TGG - chr7_1:39184854-39184873 Msa1018720:intron 20.0%
!!! TTTTGCGAATAAAATTTCAA+AGG - chr7_1:39185132-39185151 Msa1018720:intron 20.0%
!!! GTATTCGCAAAATTTTATTT+TGG + chr7_1:39185181-39185200 None:intergenic 20.0%
!! AAATATAATCTCAAAATCGT+AGG - chr7_1:39185218-39185237 Msa1018720:intron 20.0%
!!! ATAGTTTCTTTTGTTGTAAT+GGG - chr7_1:39185665-39185684 Msa1018720:intron 20.0%
!! ATAAGCAAACAATTTATTCA+AGG + chr7_1:39185711-39185730 None:intergenic 20.0%
!! TCTAAAAATTAGTAGGTTTA+TGG - chr7_1:39186045-39186064 Msa1018720:intron 20.0%
!!! TTTAATCTACTAGTATGTTT+TGG - chr7_1:39186188-39186207 Msa1018720:intron 20.0%
!!! TATCATTTTCCTTTCTATTT+AGG - chr7_1:39186377-39186396 Msa1018720:intron 20.0%
!!! ATCATTTTCCTTTCTATTTA+GGG - chr7_1:39186378-39186397 Msa1018720:intron 20.0%
!! AAAACACTAGATCTATAATT+TGG - chr7_1:39186437-39186456 Msa1018720:intron 20.0%
!! AAACACTAGATCTATAATTT+GGG - chr7_1:39186438-39186457 Msa1018720:intron 20.0%
!!! ATCAAAAAGCTTTTAAGTTA+AGG - chr7_1:39186572-39186591 Msa1018720:intron 20.0%
!!! TCAAAAAGCTTTTAAGTTAA+GGG - chr7_1:39186573-39186592 Msa1018720:intron 20.0%
!! ATAATTATATGGATGTTCAA+AGG - chr7_1:39186705-39186724 Msa1018720:intron 20.0%
!!! AGTTTTTTTTTGTTTTGAAG+AGG + chr7_1:39186784-39186803 None:intergenic 20.0%
!! ACTATTATATATTGCAAGAA+AGG + chr7_1:39186926-39186945 None:intergenic 20.0%
!! CTAGTTATAGAAATGAATAT+TGG + chr7_1:39187084-39187103 None:intergenic 20.0%
!!! TTTAAGGTTGAATCAATTTA+TGG + chr7_1:39187312-39187331 None:intergenic 20.0%
!!! AAATTTTAGGAAACATTTCA+AGG - chr7_1:39187392-39187411 Msa1018720:intron 20.0%
!!! TTTTCAAAATATGTCTTACT+TGG + chr7_1:39187638-39187657 None:intergenic 20.0%
!! TTATTACTATTACGTTAATC+GGG + chr7_1:39187755-39187774 None:intergenic 20.0%
!! CTATATAGAAAAATCAAGAA+GGG + chr7_1:39188076-39188095 None:intergenic 20.0%
!! ACTATATAGAAAAATCAAGA+AGG + chr7_1:39188077-39188096 None:intergenic 20.0%
!!! CATATCAAATTTTTGTTTTG+CGG - chr7_1:39188118-39188137 Msa1018720:intron 20.0%
!!! TTTCTCATTTTTAGTGAATT+CGG + chr7_1:39188232-39188251 None:intergenic 20.0%
!! AATTTAATTCGTAGAGTTTA+TGG + chr7_1:39188468-39188487 None:intergenic 20.0%
!!! TAAGAATGATATTTTTTAGG+GGG - chr7_1:39188631-39188650 Msa1018720:intron 20.0%
!!! AAGTTTTTTTTTTTTTGGTC+AGG + chr7_1:39188799-39188818 None:intergenic 20.0%
!! AAGAAATTATATAATCCTTC+GGG + chr7_1:39188930-39188949 None:intergenic 20.0%
!! CAAGAAATTATATAATCCTT+CGG + chr7_1:39188931-39188950 None:intergenic 20.0%
!!! GTTTTTTTATCAACTAATGT+AGG - chr7_1:39189309-39189328 Msa1018720:intron 20.0%
!!! TAAAGTTTTATACTATCTGT+GGG + chr7_1:39189667-39189686 None:intergenic 20.0%
!!! ATAAAGTTTTATACTATCTG+TGG + chr7_1:39189668-39189687 None:intergenic 20.0%
!! GTAATAGACAATATATTAGT+TGG + chr7_1:39190336-39190355 None:intergenic 20.0%
!!! TTTTGTATGAAAGTTTTTAG+AGG - chr7_1:39190359-39190378 Msa1018720:five_prime_UTR 20.0%
! AAACAATACTCCAAATCATA+GGG + chr7_1:39181038-39181057 None:intergenic 25.0%
! AAAACAATACTCCAAATCAT+AGG + chr7_1:39181039-39181058 None:intergenic 25.0%
!!! CTTTTTTAATCAAGCAAACA+TGG - chr7_1:39181371-39181390 Msa1018720:intron 25.0%
!!! TTATTTTTTTTTATGGTGGC+CGG - chr7_1:39182544-39182563 Msa1018720:intron 25.0%
!! TATTTGACATCCAATTTTAG+TGG - chr7_1:39182681-39182700 Msa1018720:intron 25.0%
!!! TTTTTTTTCTCGTACTACTA+TGG - chr7_1:39182811-39182830 Msa1018720:intron 25.0%
! AAAACTAGGCTAAATTACAT+GGG + chr7_1:39183112-39183131 None:intergenic 25.0%
! AAAAACTAGGCTAAATTACA+TGG + chr7_1:39183113-39183132 None:intergenic 25.0%
! TAGAGATCTTTATTCTCAAT+GGG + chr7_1:39184060-39184079 None:intergenic 25.0%
! ATAGAGATCTTTATTCTCAA+TGG + chr7_1:39184061-39184080 None:intergenic 25.0%
!!! GTTATTTTAGACCAAAGATT+TGG + chr7_1:39184097-39184116 None:intergenic 25.0%
! ATTGTTAAAAGAGGGAATTA+TGG - chr7_1:39184172-39184191 Msa1018720:five_prime_UTR 25.0%
!! TTGGATTGATAATTTAGGAA+GGG + chr7_1:39184391-39184410 None:intergenic 25.0%
!! TTTGGATTGATAATTTAGGA+AGG + chr7_1:39184392-39184411 None:intergenic 25.0%
!! TGTGTTTGGATTGATAATTT+AGG + chr7_1:39184396-39184415 None:intergenic 25.0%
!! AATTTCAAATGGATTTCCTT+TGG - chr7_1:39184592-39184611 Msa1018720:intron 25.0%
!! ATTTCAAATGGATTTCCTTT+GGG - chr7_1:39184593-39184612 Msa1018720:intron 25.0%
!! TACATAAGTATTTCAAGTGT+GGG + chr7_1:39185003-39185022 None:intergenic 25.0%
!! TTACATAAGTATTTCAAGTG+TGG + chr7_1:39185004-39185023 None:intergenic 25.0%
!!! TTCGCAAAATTTTATTTTGG+TGG + chr7_1:39185121-39185140 None:intergenic 25.0%
!!! TTCGCAAAATTTTATTTTGG+TGG + chr7_1:39185121-39185140 None:intergenic 25.0%
! AACTACCATGAATTCATTAT+CGG - chr7_1:39185266-39185285 Msa1018720:intron 25.0%
!!! GATAGTTTCTTTTGTTGTAA+TGG - chr7_1:39185664-39185683 Msa1018720:intron 25.0%
!!! TAGTTTCTTTTGTTGTAATG+GGG - chr7_1:39185666-39185685 Msa1018720:intron 25.0%
! ATTTATTCAAGGTAGTACAA+GGG + chr7_1:39185700-39185719 None:intergenic 25.0%
! AATTTATTCAAGGTAGTACA+AGG + chr7_1:39185701-39185720 None:intergenic 25.0%
! AGTACATTAATTAGTTGTTG+TGG - chr7_1:39185971-39185990 Msa1018720:intron 25.0%
!!! GGGATGTCATATTTTATTTT+CGG - chr7_1:39186353-39186372 Msa1018720:intron 25.0%
! AACACTAGATCTATAATTTG+GGG - chr7_1:39186439-39186458 Msa1018720:intron 25.0%
! TTAGTCAAACAAAATGCTAA+CGG - chr7_1:39186536-39186555 Msa1018720:intron 25.0%
! TCGATAAACTATATTTCACA+TGG - chr7_1:39186878-39186897 Msa1018720:intron 25.0%
!! TTTGTTTATACCTCCTTTTA+AGG + chr7_1:39186996-39187015 None:intergenic 25.0%
!! ATATTTTGTTGAAGAGCTAA+TGG + chr7_1:39187221-39187240 None:intergenic 25.0%
!! TTAGCTCTTCAACAAAATAT+TGG - chr7_1:39187221-39187240 Msa1018720:intron 25.0%
! ATTCAAGTGAATTTACACAA+TGG + chr7_1:39187264-39187283 None:intergenic 25.0%
! ATGTTTGTGAGACTAATTTA+AGG + chr7_1:39187328-39187347 None:intergenic 25.0%
! TATAATTACATGGACAATGT+AGG - chr7_1:39187498-39187517 Msa1018720:intron 25.0%
! TATTACTATTACGTTAATCG+GGG + chr7_1:39187754-39187773 None:intergenic 25.0%
!!! GTCGTTTTCCATTAAATATT+TGG - chr7_1:39187864-39187883 Msa1018720:intron 25.0%
! TTCCATTAAATATTTGGCAT+AGG - chr7_1:39187870-39187889 Msa1018720:intron 25.0%
! AAAGACTAACAGATTTCAAA+TGG - chr7_1:39187980-39187999 Msa1018720:intron 25.0%
! AAGACTAACAGATTTCAAAT+GGG - chr7_1:39187981-39188000 Msa1018720:intron 25.0%
! GATAAAACACAAAATATGAG+TGG + chr7_1:39188038-39188057 None:intergenic 25.0%
!!! ACTAGCTTTCTCATTATTTT+TGG + chr7_1:39188195-39188214 None:intergenic 25.0%
! AAAAATAATGAGAAAGCTAG+TGG - chr7_1:39188194-39188213 Msa1018720:intron 25.0%
! AAAATAATGAGAAAGCTAGT+GGG - chr7_1:39188195-39188214 Msa1018720:intron 25.0%
!!! TTCTCATTTTTAGTGAATTC+GGG + chr7_1:39188231-39188250 None:intergenic 25.0%
!!! GTAGTAATCTTAGTTCTATT+TGG + chr7_1:39188324-39188343 None:intergenic 25.0%
! ACTGCAATAAAGAAAGAATA+AGG + chr7_1:39188553-39188572 None:intergenic 25.0%
!!! AAGAATGATATTTTTTAGGG+GGG - chr7_1:39188632-39188651 Msa1018720:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr7_1:39188707-39188726 Msa1018720:intron 25.0%
!!! GTTCACTTTTGATATTTTGT+AGG - chr7_1:39188878-39188897 Msa1018720:intron 25.0%
! AGAAATTATATAATCCTTCG+GGG + chr7_1:39188929-39188948 None:intergenic 25.0%
!! TTTTCAGTGATGTAAATTCT+TGG + chr7_1:39188981-39189000 None:intergenic 25.0%
! AGAATTTACATCACTGAAAA+TGG - chr7_1:39188981-39189000 Msa1018720:intron 25.0%
!! TACTTACTTAATTGTTGCTT+TGG + chr7_1:39189189-39189208 None:intergenic 25.0%
!! CTTTTCAAATTATAAGGATG+TGG + chr7_1:39189219-39189238 None:intergenic 25.0%
! GGAAAATAGTCATTTCATAA+CGG - chr7_1:39189552-39189571 Msa1018720:five_prime_UTR 25.0%
! GAAACTTGATACTTATAAGA+TGG - chr7_1:39189580-39189599 Msa1018720:five_prime_UTR 25.0%
! ATACTTATAAGATGGTAAGT+AGG - chr7_1:39189588-39189607 Msa1018720:five_prime_UTR 25.0%
! TATTGTATTGTTCACTTTGA+AGG - chr7_1:39189821-39189840 Msa1018720:intron 25.0%
! AACAAGCATTAGTATTTGAA+AGG - chr7_1:39189924-39189943 Msa1018720:intron 25.0%
!!! TGTTTTTACATTGATAGTGA+TGG - chr7_1:39190015-39190034 Msa1018720:intron 25.0%
!! CATATGTTTAGAATATCCAT+CGG + chr7_1:39190094-39190113 None:intergenic 25.0%
! GATGGATATTCTAAACATAT+GGG - chr7_1:39190093-39190112 Msa1018720:five_prime_UTR 25.0%
! ATGGATATTCTAAACATATG+GGG - chr7_1:39190094-39190113 Msa1018720:five_prime_UTR 25.0%
! AAACTATTTGACACTTGATT+CGG - chr7_1:39190182-39190201 Msa1018720:five_prime_UTR 25.0%
! CTAAATGTTGTTATGTTGAT+TGG - chr7_1:39190209-39190228 Msa1018720:five_prime_UTR 25.0%
! TGAAGAATCAAACTTAAAGT+GGG + chr7_1:39190263-39190282 None:intergenic 25.0%
! ATGAAGAATCAAACTTAAAG+TGG + chr7_1:39190264-39190283 None:intergenic 25.0%
! ACAATATATTAGTTGGTCAT+TGG + chr7_1:39190329-39190348 None:intergenic 25.0%
! GTTTTCTTAGATGGAGAAAA+TGG - chr7_1:39181199-39181218 Msa1018720:CDS 30.0%
!! TTGTTTTGCTTTCCAACATT+CGG - chr7_1:39181273-39181292 Msa1018720:CDS 30.0%
TTCCGATCTCAAATATAAGA+GGG - chr7_1:39181660-39181679 Msa1018720:intron 30.0%
TCAAACAAGATTGTTGTATC+TGG - chr7_1:39181691-39181710 Msa1018720:intron 30.0%
CAATCGCAAAAACTTATCAT+AGG + chr7_1:39181938-39181957 None:intergenic 30.0%
! TTTTTGCGATTGTAGATTGA+AGG - chr7_1:39181946-39181965 Msa1018720:intron 30.0%
! TTTTTGTGACTGTAGATTGA+AGG - chr7_1:39181985-39182004 Msa1018720:intron 30.0%
ATCCATACCTGTATATATAG+AGG - chr7_1:39182054-39182073 Msa1018720:intron 30.0%
TCCATACCTGTATATATAGA+GGG - chr7_1:39182055-39182074 Msa1018720:intron 30.0%
AAGTATTTCCCAAGAAAAAG+CGG + chr7_1:39182097-39182116 None:intergenic 30.0%
! CTTTTTCTTGGGAAATACTT+TGG - chr7_1:39182097-39182116 Msa1018720:intron 30.0%
!! AAATACTTTGGTGCCATTAA+TGG - chr7_1:39182109-39182128 Msa1018720:intron 30.0%
CATTAATGGTCAGGATTTAA+TGG - chr7_1:39182197-39182216 Msa1018720:CDS 30.0%
AAAATTGATAAACGGGCAAT+TGG - chr7_1:39182428-39182447 Msa1018720:CDS 30.0%
!!! TATTTTTTTTTATGGTGGCC+GGG - chr7_1:39182545-39182564 Msa1018720:intron 30.0%
! TTTTTCTTTAAATCGAACCC+CGG + chr7_1:39182566-39182585 None:intergenic 30.0%
AATTATAAGCTAAGCTCATG+AGG - chr7_1:39182584-39182603 Msa1018720:intron 30.0%
!!! CGGAATATGTAGTAGTTTTT+TGG - chr7_1:39182731-39182750 Msa1018720:five_prime_UTR 30.0%
!! TTTTGGCTAAATTACACCAT+AGG - chr7_1:39182748-39182767 Msa1018720:five_prime_UTR 30.0%
AGAAATTCCCCAAATTGTTA+TGG + chr7_1:39182921-39182940 None:intergenic 30.0%
GTTATCTAATTACAACACCA+TGG + chr7_1:39183079-39183098 None:intergenic 30.0%
ATAGAATGAGAAAAGAGTAG+TGG - chr7_1:39183168-39183187 Msa1018720:five_prime_UTR 30.0%
! CATCTGCTTGTTAAAAAGAA+AGG + chr7_1:39183551-39183570 None:intergenic 30.0%
TGAGCATTACAAGAGATATA+AGG - chr7_1:39183605-39183624 Msa1018720:intron 30.0%
TTAGAATCGAGAGTTAATGA+GGG + chr7_1:39183814-39183833 None:intergenic 30.0%
ATTAGAATCGAGAGTTAATG+AGG + chr7_1:39183815-39183834 None:intergenic 30.0%
! TCTTATTTGTTACTTAGACC+TGG + chr7_1:39184008-39184027 None:intergenic 30.0%
! ATTTTAGACCAAAGATTTGG+CGG + chr7_1:39184094-39184113 None:intergenic 30.0%
AATAACCAAACTATCCATTG+TGG - chr7_1:39184111-39184130 Msa1018720:intron 30.0%
AATCTTTACTATGTTCCCAA+AGG + chr7_1:39184611-39184630 None:intergenic 30.0%
TACGTGCAAACAAAAGAATT+TGG - chr7_1:39184640-39184659 Msa1018720:intron 30.0%
ACGTGCAAACAAAAGAATTT+GGG - chr7_1:39184641-39184660 Msa1018720:intron 30.0%
TGCAGACAACAATAAATACA+AGG - chr7_1:39184708-39184727 Msa1018720:intron 30.0%
! GTTTTATGCATAATCGGTAA+GGG - chr7_1:39184745-39184764 Msa1018720:intron 30.0%
AGAATCGTTACATTATTCGT+AGG - chr7_1:39184781-39184800 Msa1018720:intron 30.0%
! TCTCAAAATCGTAGGATTTT+AGG - chr7_1:39185226-39185245 Msa1018720:intron 30.0%
GTCATATTAGAGGAAAACAT+TGG - chr7_1:39185347-39185366 Msa1018720:intron 30.0%
CATTGTGGAAAGCAATAATT+TGG - chr7_1:39185384-39185403 Msa1018720:intron 30.0%
AAGCAATAATTTGGTCGTTA+TGG - chr7_1:39185393-39185412 Msa1018720:intron 30.0%
AAAAGTTGCAAACTTTAACG+AGG - chr7_1:39185445-39185464 Msa1018720:intron 30.0%
!!! GCGACTTAGTAATGATTTTT+TGG - chr7_1:39185571-39185590 Msa1018720:intron 30.0%
ATACCAATTTATTGATGCCA+TGG - chr7_1:39185600-39185619 Msa1018720:intron 30.0%
!! AATTTGAATGGTCTTGTAGA+AGG - chr7_1:39185793-39185812 Msa1018720:intron 30.0%
TATTACTCTACTCCAACATA+TGG + chr7_1:39185864-39185883 None:intergenic 30.0%
! GTTAGTTCAAAAGTTTTACC+TGG + chr7_1:39185887-39185906 None:intergenic 30.0%
CATTAATTAGTTGTTGTGGA+CGG - chr7_1:39185975-39185994 Msa1018720:intron 30.0%
CTTTACATAAAGATGGTTGA+TGG - chr7_1:39186129-39186148 Msa1018720:intron 30.0%
!!! TTTTTTGTCTGTCTTAGAGT+AGG - chr7_1:39186246-39186265 Msa1018720:intron 30.0%
CCAACATTGGATGTTATATT+TGG + chr7_1:39186283-39186302 None:intergenic 30.0%
CCAAATATAACATCCAATGT+TGG - chr7_1:39186280-39186299 Msa1018720:intron 30.0%
! TAGGAAAAGTTTTCCAACAT+TGG + chr7_1:39186296-39186315 None:intergenic 30.0%
! ACTACATTTTCATAGTAGTG+TGG - chr7_1:39186332-39186351 Msa1018720:intron 30.0%
! CTACATTTTCATAGTAGTGT+GGG - chr7_1:39186333-39186352 Msa1018720:intron 30.0%
CGTCTAATAAGCATAAATGT+AGG - chr7_1:39186492-39186511 Msa1018720:intron 30.0%
ATGTAATTAGAGTGACGATT+TGG + chr7_1:39186748-39186767 None:intergenic 30.0%
TGTATAGATGGAACCTTAAA+AGG - chr7_1:39186980-39186999 Msa1018720:intron 30.0%
! AAAGGAGGTATAAACAAAGA+AGG - chr7_1:39186998-39187017 Msa1018720:intron 30.0%
ATCAACGAATTACTCAACAA+TGG - chr7_1:39187043-39187062 Msa1018720:intron 30.0%
TTCAATACCTGCACATTTAA+AGG + chr7_1:39187168-39187187 None:intergenic 30.0%
CCATGTAATTATACATAGCT+TGG + chr7_1:39187491-39187510 None:intergenic 30.0%
CCAAGCTATGTATAATTACA+TGG - chr7_1:39187488-39187507 Msa1018720:intron 30.0%
CAATGTAGGTCATTATTCTA+CGG - chr7_1:39187512-39187531 Msa1018720:intron 30.0%
AGATTGACAACATGACTAAA+GGG - chr7_1:39187720-39187739 Msa1018720:intron 30.0%
TGCCTATGCCAAATATTTAA+TGG + chr7_1:39187875-39187894 None:intergenic 30.0%
AGACTAACAGATTTCAAATG+GGG - chr7_1:39187982-39188001 Msa1018720:intron 30.0%
CACAAAATATGAGTGGTTTA+TGG + chr7_1:39188031-39188050 None:intergenic 30.0%
AAATAATGAGAAAGCTAGTG+GGG - chr7_1:39188196-39188215 Msa1018720:intron 30.0%
AATGAGAAAGAACTGTTGAA+AGG - chr7_1:39188243-39188262 Msa1018720:intron 30.0%
! AAAGGAAGTACAGACTTTAT+TGG - chr7_1:39188261-39188280 Msa1018720:intron 30.0%
! AAGGAAGTACAGACTTTATT+GGG - chr7_1:39188262-39188281 Msa1018720:intron 30.0%
AAATATGTAAGAGAATCGCA+AGG - chr7_1:39188497-39188516 Msa1018720:intron 30.0%
!!! CTTTATTGCAGTTTTGAATG+TGG - chr7_1:39188561-39188580 Msa1018720:intron 30.0%
!!! AGAATGATATTTTTTAGGGG+GGG - chr7_1:39188633-39188652 Msa1018720:intron 30.0%
GACAATGCATTATTATATGC+AGG - chr7_1:39188706-39188725 Msa1018720:intron 30.0%
CAATGCATTATTATATGCAG+GGG - chr7_1:39188708-39188727 Msa1018720:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr7_1:39188756-39188775 None:intergenic 30.0%
! GATATTTTGTAGGACCAATA+TGG - chr7_1:39188888-39188907 Msa1018720:intron 30.0%
AGACATAGTTACAACCATAT+TGG + chr7_1:39188905-39188924 None:intergenic 30.0%
TTTACATCACTGAAAATGGT+TGG - chr7_1:39188985-39189004 Msa1018720:intron 30.0%
! TTGTTACATCCTCTTTTTGT+AGG - chr7_1:39189086-39189105 Msa1018720:intron 30.0%
! TTTGGTAGCATTTATATGTG+CGG + chr7_1:39189171-39189190 None:intergenic 30.0%
CACTTGGACATATTTATTGA+TGG + chr7_1:39189411-39189430 None:intergenic 30.0%
CATCAATAAATATGTCCAAG+TGG - chr7_1:39189409-39189428 Msa1018720:intron 30.0%
TAAATACATTACGTACCACT+TGG + chr7_1:39189427-39189446 None:intergenic 30.0%
AAGTGGTACGTAATGTATTT+AGG - chr7_1:39189426-39189445 Msa1018720:intron 30.0%
AGATCTCTAACTCTTACATA+TGG - chr7_1:39189473-39189492 Msa1018720:intron 30.0%
ATGGACAAAACTCAAATTTG+AGG - chr7_1:39189492-39189511 Msa1018720:five_prime_UTR 30.0%
TGGACAAAACTCAAATTTGA+GGG - chr7_1:39189493-39189512 Msa1018720:five_prime_UTR 30.0%
AAATAGTCATTTCATAACGG+CGG - chr7_1:39189555-39189574 Msa1018720:five_prime_UTR 30.0%
CATTAAAGATCAGTTTCTTG+TGG + chr7_1:39189989-39190008 None:intergenic 30.0%
CGATGGATATTCTAAACATA+TGG - chr7_1:39190092-39190111 Msa1018720:five_prime_UTR 30.0%
TCCAAATCATAGGGAATCTA+GGG + chr7_1:39181029-39181048 None:intergenic 35.0%
TGTCATTGTCAAAGTAGTGT+CGG + chr7_1:39181068-39181087 None:intergenic 35.0%
GTAACATTGTGTAGTTGGAT+TGG - chr7_1:39181091-39181110 Msa1018720:three_prime_UTR 35.0%
! ACTTCCAGAGTTTTCTTAGA+TGG - chr7_1:39181190-39181209 Msa1018720:CDS 35.0%
TTCTCCATCTAAGAAAACTC+TGG + chr7_1:39181197-39181216 None:intergenic 35.0%
! CAAGATTGCAAGAATGGTTT+TGG + chr7_1:39181249-39181268 None:intergenic 35.0%
! TGTTTTGCTTTCCAACATTC+GGG - chr7_1:39181274-39181293 Msa1018720:CDS 35.0%
TCTACTTCACAGGTAGTTAT+TGG - chr7_1:39181545-39181564 Msa1018720:intron 35.0%
!!! ATATCCGTAGTTTTAGCCAT+AGG - chr7_1:39181570-39181589 Msa1018720:intron 35.0%
ACTCAATATAACTGTGCCTA+TGG + chr7_1:39181589-39181608 None:intergenic 35.0%
! CTCTTATATTTGAGATCGGA+AGG + chr7_1:39181661-39181680 None:intergenic 35.0%
CTTCCGATCTCAAATATAAG+AGG - chr7_1:39181659-39181678 Msa1018720:intron 35.0%
TCCGATCTCAAATATAAGAG+GGG - chr7_1:39181661-39181680 Msa1018720:intron 35.0%
! TCCCCTCTTATATTTGAGAT+CGG + chr7_1:39181665-39181684 None:intergenic 35.0%
AAGACCAACGTAATACAGAT+TGG - chr7_1:39181769-39181788 Msa1018720:intron 35.0%
TTCTCCAATCTGTATTACGT+TGG + chr7_1:39181776-39181795 None:intergenic 35.0%
AACGTAATACAGATTGGAGA+AGG - chr7_1:39181775-39181794 Msa1018720:intron 35.0%
ATTCATCAAGCTTTCCAAAC+CGG - chr7_1:39181839-39181858 Msa1018720:intron 35.0%
!! ACTTTTTAGCATGTACCTGA+GGG + chr7_1:39181909-39181928 None:intergenic 35.0%
CCATACCTGTATATATAGAG+GGG - chr7_1:39182056-39182075 Msa1018720:intron 35.0%
TGTATCCCCTCTATATATAC+AGG + chr7_1:39182064-39182083 None:intergenic 35.0%
!!! AGTTTTATGCCGCTTTTTCT+TGG - chr7_1:39182085-39182104 Msa1018720:intron 35.0%
!!! GTTTTATGCCGCTTTTTCTT+GGG - chr7_1:39182086-39182105 Msa1018720:intron 35.0%
!! TAATGGTATGGTGCCATTAA+TGG + chr7_1:39182125-39182144 None:intergenic 35.0%
!!! ATTTTTTTTTATGGTGGCCG+GGG - chr7_1:39182546-39182565 Msa1018720:intron 35.0%
ATCAAGGGAGAGAATAAATG+TGG + chr7_1:39183202-39183221 None:intergenic 35.0%
AAGGAGATAGGAGAAATCAA+GGG + chr7_1:39183217-39183236 None:intergenic 35.0%
AAAGGAGATAGGAGAAATCA+AGG + chr7_1:39183218-39183237 None:intergenic 35.0%
AAGACACACAAAAAGGAGAT+AGG + chr7_1:39183229-39183248 None:intergenic 35.0%
! TCCTTTTTGTGTGTCTTAGA+GGG - chr7_1:39183232-39183251 Msa1018720:intron 35.0%
TCCATCCAAAATGAAGATTG+AGG - chr7_1:39183268-39183287 Msa1018720:intron 35.0%
CCATCCAAAATGAAGATTGA+GGG - chr7_1:39183269-39183288 Msa1018720:intron 35.0%
CATCCAAAATGAAGATTGAG+GGG - chr7_1:39183270-39183289 Msa1018720:intron 35.0%
AAAATGAAGATTGAGGGGAT+GGG - chr7_1:39183275-39183294 Msa1018720:intron 35.0%
TAACAAGCAGAAGCTTATTC+TGG - chr7_1:39183455-39183474 Msa1018720:five_prime_UTR 35.0%
TAACAAGCAGATGCTTATTC+TGG - chr7_1:39183558-39183577 Msa1018720:intron 35.0%
! GAGTTAATGAGGGATTTTGA+TGG + chr7_1:39183804-39183823 None:intergenic 35.0%
!! TACAAGAAGTACTTAAGTCC+AGG - chr7_1:39183987-39184006 Msa1018720:intron 35.0%
!! TTTATTCTCAATGGGTTGTC+TGG + chr7_1:39184052-39184071 None:intergenic 35.0%
! TTTTAGACCAAAGATTTGGC+GGG + chr7_1:39184093-39184112 None:intergenic 35.0%
AGATTTCTAACCATCCACAA+TGG + chr7_1:39184128-39184147 None:intergenic 35.0%
ATTATGGTGTGTTTGGATGA+TGG - chr7_1:39184188-39184207 Msa1018720:five_prime_UTR 35.0%
! TGTTTGGATGATGGTTTAAG+AGG - chr7_1:39184197-39184216 Msa1018720:intron 35.0%
! GTTTGGATGATGGTTTAAGA+GGG - chr7_1:39184198-39184217 Msa1018720:intron 35.0%
! TTTGGATGATGGTTTAAGAG+GGG - chr7_1:39184199-39184218 Msa1018720:intron 35.0%
TGTCAAGTACAACATCTACA+AGG + chr7_1:39184419-39184438 None:intergenic 35.0%
! GAACGGAAGCATATATCTAT+TGG - chr7_1:39184481-39184500 Msa1018720:intron 35.0%
AATTAAATAGCACTGCCCTT+CGG + chr7_1:39184507-39184526 None:intergenic 35.0%
!! AAGGGCAGTGCTATTTAATT+TGG - chr7_1:39184507-39184526 Msa1018720:intron 35.0%
TGCAAACAAAAGAATTTGGG+AGG - chr7_1:39184644-39184663 Msa1018720:intron 35.0%
ACAGACACGTGAAAAGAATA+TGG + chr7_1:39184676-39184695 None:intergenic 35.0%
!! GTCGAGGTTTTATGCATAAT+CGG - chr7_1:39184739-39184758 Msa1018720:intron 35.0%
!! GGTTTTATGCATAATCGGTA+AGG - chr7_1:39184744-39184763 Msa1018720:intron 35.0%
TTTGGTGGAATCTTGTATCT+TGG + chr7_1:39185106-39185125 None:intergenic 35.0%
ACCATGAATTCATTATCGGA+TGG - chr7_1:39185270-39185289 Msa1018720:intron 35.0%
CCATGAATTCATTATCGGAT+GGG - chr7_1:39185271-39185290 Msa1018720:intron 35.0%
CATGAATTCATTATCGGATG+GGG - chr7_1:39185272-39185291 Msa1018720:intron 35.0%
AATGAGTGACAATGCTGTAA+TGG + chr7_1:39185312-39185331 None:intergenic 35.0%
AGCATTGTCACTCATTTCAT+GGG - chr7_1:39185316-39185335 Msa1018720:intron 35.0%
GAAAACATTGGCAAAAGCTT+CGG - chr7_1:39185359-39185378 Msa1018720:intron 35.0%
TTCTTCATCTAGCAATGAAG+AGG + chr7_1:39185502-39185521 None:intergenic 35.0%
TGGCATATCCAATTTCCAAT+AGG - chr7_1:39185549-39185568 Msa1018720:five_prime_UTR 35.0%
ATCATTACTAAGTCGCCTAT+TGG + chr7_1:39185567-39185586 None:intergenic 35.0%
CTACCATGGCATCAATAAAT+TGG + chr7_1:39185606-39185625 None:intergenic 35.0%
ATGTTACCAAAACACTACCA+TGG + chr7_1:39185620-39185639 None:intergenic 35.0%
CTTACAGATTCTCCATATGT+TGG - chr7_1:39185849-39185868 Msa1018720:intron 35.0%
AGTAGTTGTACAACGAATGT+AGG + chr7_1:39186315-39186334 None:intergenic 35.0%
AGAACTAGCCCTAAATAGAA+AGG + chr7_1:39186389-39186408 None:intergenic 35.0%
AGAATACTTGAGAAACCAAG+TGG - chr7_1:39186610-39186629 Msa1018720:intron 35.0%
ACTTATTTGTAGGTTCCACT+TGG + chr7_1:39186628-39186647 None:intergenic 35.0%
TCAACAACCACTTGTATAGA+TGG - chr7_1:39186968-39186987 Msa1018720:intron 35.0%
TAAGGTTCCATCTATACAAG+TGG + chr7_1:39186978-39186997 None:intergenic 35.0%
ATAGATGGAACCTTAAAAGG+AGG - chr7_1:39186983-39187002 Msa1018720:intron 35.0%
ACATGATCCTTTAAATGTGC+AGG - chr7_1:39187158-39187177 Msa1018720:intron 35.0%
GCTCTTCAACAAAATATTGG+CGG - chr7_1:39187224-39187243 Msa1018720:intron 35.0%
GATCACCATATGTTTCGAAT+AGG + chr7_1:39187431-39187450 None:intergenic 35.0%
ATGGTGATCGAGTGAAATAT+TGG - chr7_1:39187442-39187461 Msa1018720:intron 35.0%
TTATACATAGCTTGGAGTTC+CGG + chr7_1:39187483-39187502 None:intergenic 35.0%
!! CTTGTATAGCTTTGAAACTG+TGG + chr7_1:39187607-39187626 None:intergenic 35.0%
GAGATTGACAACATGACTAA+AGG - chr7_1:39187719-39187738 Msa1018720:intron 35.0%
TAACAGATTTCAAATGGGGA+TGG - chr7_1:39187986-39188005 Msa1018720:intron 35.0%
!!! GTTTTAGAGCCATTGTTCAA+CGG - chr7_1:39188162-39188181 Msa1018720:intron 35.0%
!! TAGTGACAATTTTGATGCCT+TGG - chr7_1:39188344-39188363 Msa1018720:intron 35.0%
!!! ATTGCAGTTTTGAATGTGGA+AGG - chr7_1:39188565-39188584 Msa1018720:intron 35.0%
AATGTGGAAGGAAAAACTCT+TGG - chr7_1:39188577-39188596 Msa1018720:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr7_1:39188755-39188774 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr7_1:39188757-39188776 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr7_1:39188768-39188787 None:intergenic 35.0%
GAAGGAATTCCTACAAAAAG+AGG + chr7_1:39189098-39189117 None:intergenic 35.0%
! GGATTTGGGATATTGAAAGA+AGG + chr7_1:39189116-39189135 None:intergenic 35.0%
! GTTCGTCTTTCAATGGATTT+GGG + chr7_1:39189130-39189149 None:intergenic 35.0%
! TGTTCGTCTTTCAATGGATT+TGG + chr7_1:39189131-39189150 None:intergenic 35.0%
TATTTAGGCCCATAAGCTAA+TGG - chr7_1:39189441-39189460 Msa1018720:intron 35.0%
GGACAAAACTCAAATTTGAG+GGG - chr7_1:39189494-39189513 Msa1018720:five_prime_UTR 35.0%
! TTTTCCGCCAACGAATTTAT+GGG + chr7_1:39189538-39189557 None:intergenic 35.0%
! ATTTTCCGCCAACGAATTTA+TGG + chr7_1:39189539-39189558 None:intergenic 35.0%
! GATACGTATGATTTTACCGA+TGG - chr7_1:39190075-39190094 Msa1018720:intron 35.0%
TACCATTTAGCTGTGTTTGT+CGG + chr7_1:39190159-39190178 None:intergenic 35.0%
!! TATGTTGATTGGTCTCAACT+TGG - chr7_1:39190220-39190239 Msa1018720:five_prime_UTR 35.0%
TCCCTAGATTCCCTATGATT+TGG - chr7_1:39181025-39181044 Msa1018720:three_prime_UTR 40.0%
CTCCAAATCATAGGGAATCT+AGG + chr7_1:39181030-39181049 None:intergenic 40.0%
CACGAGTAACATTGTGTAGT+TGG - chr7_1:39181086-39181105 Msa1018720:three_prime_UTR 40.0%
AAGCGACAAGATTGCAAGAA+TGG + chr7_1:39181255-39181274 None:intergenic 40.0%
AGGAATACTTCTACTTCCCT+CGG - chr7_1:39181499-39181518 Msa1018720:intron 40.0%
GTAGATAAGTCACGTTGAGA+TGG + chr7_1:39181530-39181549 None:intergenic 40.0%
ACGTGACTTATCTACTTCAC+AGG - chr7_1:39181535-39181554 Msa1018720:intron 40.0%
TGTGCCTATGGCTAAAACTA+CGG + chr7_1:39181577-39181596 None:intergenic 40.0%
! TTCCCACGTAGCTTTTTGTT+TGG - chr7_1:39181868-39181887 Msa1018720:intron 40.0%
CACCAAACAAAAAGCTACGT+GGG + chr7_1:39181873-39181892 None:intergenic 40.0%
ACACCAAACAAAAAGCTACG+TGG + chr7_1:39181874-39181893 None:intergenic 40.0%
!!! CGTAGCTTTTTGTTTGGTGT+TGG - chr7_1:39181874-39181893 Msa1018720:intron 40.0%
!! CTTTTTAGCATGTACCTGAG+GGG + chr7_1:39181908-39181927 None:intergenic 40.0%
!! GACTTTTTAGCATGTACCTG+AGG + chr7_1:39181910-39181929 None:intergenic 40.0%
TTGTGACTGTAGATTGAAGG+TGG - chr7_1:39181988-39182007 Msa1018720:intron 40.0%
ATTGAAGGTGGATCTCATGA+AGG - chr7_1:39182000-39182019 Msa1018720:intron 40.0%
! AGAGGGCTTGGTATATTTGA+CGG - chr7_1:39182027-39182046 Msa1018720:intron 40.0%
CCCCTCTATATATACAGGTA+TGG + chr7_1:39182059-39182078 None:intergenic 40.0%
AATGTGTGGCTCAGATCTAA+TGG + chr7_1:39182142-39182161 None:intergenic 40.0%
GTGTGTGTGGGTTTCATTAA+TGG - chr7_1:39182183-39182202 Msa1018720:intron 40.0%
TGTGGGTTTCATTAATGGTC+AGG - chr7_1:39182188-39182207 Msa1018720:CDS 40.0%
ATGGTCAGGATTTAATGGCA+CGG - chr7_1:39182202-39182221 Msa1018720:CDS 40.0%
AAGAAAAAGGAGCAGCACTT+GGG + chr7_1:39182242-39182261 None:intergenic 40.0%
AAAGAAAAAGGAGCAGCACT+TGG + chr7_1:39182243-39182262 None:intergenic 40.0%
GGGTTGAAATAGGTAGTAGT+TGG - chr7_1:39183142-39183161 Msa1018720:five_prime_UTR 40.0%
AGGGAGAGAATAAATGTGGA+TGG + chr7_1:39183198-39183217 None:intergenic 40.0%
! CTCCTTTTTGTGTGTCTTAG+AGG - chr7_1:39183231-39183250 Msa1018720:intron 40.0%
!! ACCCTCTAAGACACACAAAA+AGG + chr7_1:39183236-39183255 None:intergenic 40.0%
! CCCTCAATCTTCATTTTGGA+TGG + chr7_1:39183272-39183291 None:intergenic 40.0%
! CATCCCCTCAATCTTCATTT+TGG + chr7_1:39183276-39183295 None:intergenic 40.0%
CAAAATGAAGATTGAGGGGA+TGG - chr7_1:39183274-39183293 Msa1018720:intron 40.0%
AAATGAAGATTGAGGGGATG+GGG - chr7_1:39183276-39183295 Msa1018720:intron 40.0%
ACCAAACTATCCATTGTGGA+TGG - chr7_1:39184115-39184134 Msa1018720:intron 40.0%
ACCATCCACAATGGATAGTT+TGG + chr7_1:39184119-39184138 None:intergenic 40.0%
AGAGGGAATTATGGTGTGTT+TGG - chr7_1:39184181-39184200 Msa1018720:five_prime_UTR 40.0%
CAACATCTACAAGGTGTGTT+TGG + chr7_1:39184410-39184429 None:intergenic 40.0%
AGAAGAAGAACCTTTCCTCT+TGG - chr7_1:39184459-39184478 Msa1018720:intron 40.0%
AAGAACCTTTCCTCTTGGAA+CGG - chr7_1:39184464-39184483 Msa1018720:intron 40.0%
ATATATGCTTCCGTTCCAAG+AGG + chr7_1:39184477-39184496 None:intergenic 40.0%
AGCATATATCTATTGGCCGA+AGG - chr7_1:39184488-39184507 Msa1018720:intron 40.0%
GCATATATCTATTGGCCGAA+GGG - chr7_1:39184489-39184508 Msa1018720:intron 40.0%
ATACAAGGTAATCACAGTCG+AGG - chr7_1:39184723-39184742 Msa1018720:intron 40.0%
TATGCATAATCGGTAAGGGA+AGG - chr7_1:39184749-39184768 Msa1018720:intron 40.0%
CCCATCCGATAATGAATTCA+TGG + chr7_1:39185274-39185293 None:intergenic 40.0%
AATTCATTATCGGATGGGGA+TGG - chr7_1:39185276-39185295 Msa1018720:intron 40.0%
CAGCATTGTCACTCATTTCA+TGG - chr7_1:39185315-39185334 Msa1018720:intron 40.0%
ACTCATTTCATGGGATACGA+AGG - chr7_1:39185325-39185344 Msa1018720:intron 40.0%
GGATACGAAGGTCATATTAG+AGG - chr7_1:39185337-39185356 Msa1018720:intron 40.0%
TTTGGTCGTTATGGACAATG+AGG - chr7_1:39185402-39185421 Msa1018720:intron 40.0%
CTTTAACGAGGCGATTTCAA+AGG - chr7_1:39185457-39185476 Msa1018720:intron 40.0%
AAAGGCGAAACCCTTATCAT+GGG - chr7_1:39185475-39185494 Msa1018720:intron 40.0%
TTAGTTGATCCCTTTCAGAC+TGG - chr7_1:39185525-39185544 Msa1018720:five_prime_UTR 40.0%
ATATGCCAACCAGTCTGAAA+GGG + chr7_1:39185537-39185556 None:intergenic 40.0%
CTAAGTCGCCTATTGGAAAT+TGG + chr7_1:39185560-39185579 None:intergenic 40.0%
!! TTGATGCCATGGTAGTGTTT+TGG - chr7_1:39185611-39185630 Msa1018720:intron 40.0%
!! TTCTTTTGTTGTAATGGGGC+TGG - chr7_1:39185670-39185689 Msa1018720:intron 40.0%
GTGCAACGATTGAAGAAACT+TGG - chr7_1:39185818-39185837 Msa1018720:intron 40.0%
TGTTGGAGTAGAGTAATACC+AGG - chr7_1:39185866-39185885 Msa1018720:intron 40.0%
AAGTGCAGGATAGTCACAAA+AGG + chr7_1:39187191-39187210 None:intergenic 40.0%
! CTAATGGATAGTCAAAGTGC+AGG + chr7_1:39187205-39187224 None:intergenic 40.0%
GAGCTCCTATTCGAAACATA+TGG - chr7_1:39187423-39187442 Msa1018720:intron 40.0%
TTGGACTACATTCAATGAGC+CGG - chr7_1:39187461-39187480 Msa1018720:intron 40.0%
TGTAGGTCATTATTCTACGG+AGG - chr7_1:39187515-39187534 Msa1018720:intron 40.0%
TTTGGCATAGGCATTTCAAG+AGG - chr7_1:39187882-39187901 Msa1018720:intron 40.0%
TTGGCATAGGCATTTCAAGA+GGG - chr7_1:39187883-39187902 Msa1018720:intron 40.0%
GCATTTCAAGAGGGAGAAAT+TGG - chr7_1:39187892-39187911 Msa1018720:intron 40.0%
!! TCCTCAGGCTTTGAACTATA+GGG + chr7_1:39187946-39187965 None:intergenic 40.0%
!! ATCCTCAGGCTTTGAACTAT+AGG + chr7_1:39187947-39187966 None:intergenic 40.0%
!! AATGGCTCTAAAACCCTGAA+AGG + chr7_1:39188156-39188175 None:intergenic 40.0%
GGATAATCTCCGTTGAACAA+TGG + chr7_1:39188174-39188193 None:intergenic 40.0%
!! TTTACCTTCTGAAACAGCCA+AGG + chr7_1:39188364-39188383 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr7_1:39188752-39188771 Msa1018720:intron 40.0%
TAAGGTGAATTCTAGCCATC+AGG - chr7_1:39188770-39188789 Msa1018720:intron 40.0%
GTTCGATGTTCGTCTTTCAA+TGG + chr7_1:39189137-39189156 None:intergenic 40.0%
! ACTCGTGACCATTAGCTTAT+GGG + chr7_1:39189452-39189471 None:intergenic 40.0%
! AACTCGTGACCATTAGCTTA+TGG + chr7_1:39189453-39189472 None:intergenic 40.0%
AATTTATGGGGCACACAAGA+TGG + chr7_1:39189525-39189544 None:intergenic 40.0%
TTTCCGCCAACGAATTTATG+GGG + chr7_1:39189537-39189556 None:intergenic 40.0%
!!! ACGTTCGTGGATTTTTTGCA+TGG - chr7_1:39190043-39190062 Msa1018720:intron 40.0%
!!! CGTTCGTGGATTTTTTGCAT+GGG - chr7_1:39190044-39190063 Msa1018720:intron 40.0%
TACCGACAAACACAGCTAAA+TGG - chr7_1:39190154-39190173 Msa1018720:five_prime_UTR 40.0%
TTGGTCTCAACTTGGAGAAA+AGG - chr7_1:39190228-39190247 Msa1018720:five_prime_UTR 40.0%
TCAACTTGGAGAAAAGGCAA+GGG - chr7_1:39190234-39190253 Msa1018720:five_prime_UTR 40.0%
AAATGCTCAAACCTTGTGCC+TGG + chr7_1:39181301-39181320 None:intergenic 45.0%
GATCTCATGAAGGAGGAAGA+GGG - chr7_1:39182010-39182029 Msa1018720:intron 45.0%
GTGGCTCAGATCTAATGGTA+TGG + chr7_1:39182137-39182156 None:intergenic 45.0%
CACACATCACACACACACTT+GGG + chr7_1:39182166-39182185 None:intergenic 45.0%
ACACACATCACACACACACT+TGG + chr7_1:39182167-39182186 None:intergenic 45.0%
TGTGTGTGATGTGTGTGTGT+GGG - chr7_1:39182171-39182190 Msa1018720:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - chr7_1:39182214-39182233 Msa1018720:CDS 45.0%
TTTGTGTGTCTTAGAGGGTG+AGG - chr7_1:39183237-39183256 Msa1018720:intron 45.0%
!! ATTCTCAATGGGTTGTCTGG+TGG + chr7_1:39184049-39184068 None:intergenic 45.0%
GGTGGAATCTTGTATCTTGG+TGG + chr7_1:39185103-39185122 None:intergenic 45.0%
CAAAGGCGAAACCCTTATCA+TGG - chr7_1:39185474-39185493 Msa1018720:intron 45.0%
AAGGCGAAACCCTTATCATG+GGG - chr7_1:39185476-39185495 Msa1018720:intron 45.0%
ATGAAGAGGCCCCATGATAA+GGG + chr7_1:39185488-39185507 None:intergenic 45.0%
AATGAAGAGGCCCCATGATA+AGG + chr7_1:39185489-39185508 None:intergenic 45.0%
TTGATCCCTTTCAGACTGGT+TGG - chr7_1:39185529-39185548 Msa1018720:five_prime_UTR 45.0%
GATATGCCAACCAGTCTGAA+AGG + chr7_1:39185538-39185557 None:intergenic 45.0%
TCCCTATAGTTCAAAGCCTG+AGG - chr7_1:39187942-39187961 Msa1018720:intron 45.0%
TAGTTCAAAGCCTGAGGATG+TGG - chr7_1:39187948-39187967 Msa1018720:intron 45.0%
! GCGTTTGATTTCGCCTTTCA+GGG - chr7_1:39188140-39188159 Msa1018720:intron 45.0%
TACCAACTGAGCTATGCTCA+CGG + chr7_1:39188685-39188704 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr7_1:39188712-39188731 Msa1018720:intron 45.0%
CATTATTATATGCAGGGGCC+GGG - chr7_1:39188713-39188732 Msa1018720:intron 45.0%
ATTATTATATGCAGGGGCCG+GGG - chr7_1:39188714-39188733 Msa1018720:intron 45.0%
!! TTTTTGGTCAGGTAGCCTGA+TGG + chr7_1:39188788-39188807 None:intergenic 45.0%
TGTAACTATGTCTACCCCGA+AGG - chr7_1:39188912-39188931 Msa1018720:intron 45.0%
TGTGTGCCCCATAAATTCGT+TGG - chr7_1:39189528-39189547 Msa1018720:five_prime_UTR 45.0%
TAGTCATTTCATAACGGCGG+TGG - chr7_1:39189558-39189577 Msa1018720:five_prime_UTR 45.0%
CTCAACTTGGAGAAAAGGCA+AGG - chr7_1:39190233-39190252 Msa1018720:five_prime_UTR 45.0%
!!! TATCTTTTTATTTTTTTTTA+TGG - chr7_1:39182537-39182556 Msa1018720:intron 5.0%
!!! ATAATATTATAAGTTTTTTT+AGG - chr7_1:39183713-39183732 Msa1018720:intron 5.0%
!!! TAATATTATAAGTTTTTTTA+GGG - chr7_1:39183714-39183733 Msa1018720:intron 5.0%
!!! AATTATAATATATTTTTATG+AGG + chr7_1:39183760-39183779 None:intergenic 5.0%
!!! TACTTTTATTTTTAAAATTA+TGG - chr7_1:39184238-39184257 Msa1018720:intron 5.0%
!! ATATATTGTATATAATTATA+TGG - chr7_1:39186694-39186713 Msa1018720:intron 5.0%
!! ATACAATTATTTAAATAAAA+TGG + chr7_1:39188405-39188424 None:intergenic 5.0%
!!! TAATAAAGTTTTTTTTTTTT+TGG + chr7_1:39188804-39188823 None:intergenic 5.0%
CGTTGAGATGGTTTCTCCGA+GGG + chr7_1:39181518-39181537 None:intergenic 50.0%
ACGTTGAGATGGTTTCTCCG+AGG + chr7_1:39181519-39181538 None:intergenic 50.0%
AGCTACGTGGGAATGATGTC+CGG + chr7_1:39181861-39181880 None:intergenic 50.0%
GAAGGTGGATCTCATGAAGG+AGG - chr7_1:39182003-39182022 Msa1018720:intron 50.0%
GGATCTCATGAAGGAGGAAG+AGG - chr7_1:39182009-39182028 Msa1018720:intron 50.0%
ACACACACTTGGGCAATGTG+TGG + chr7_1:39182156-39182175 None:intergenic 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - chr7_1:39182170-39182189 Msa1018720:intron 50.0%
!! CAGCACTTGGGTGCCATTAA+TGG + chr7_1:39182230-39182249 None:intergenic 50.0%
TGTCTTAGAGGGTGAGGTTG+TGG - chr7_1:39183243-39183262 Msa1018720:intron 50.0%
GTCTTAGAGGGTGAGGTTGT+GGG - chr7_1:39183244-39183263 Msa1018720:intron 50.0%
AGACCAAAGATTTGGCGGGA+GGG + chr7_1:39184089-39184108 None:intergenic 50.0%
TAGACCAAAGATTTGGCGGG+AGG + chr7_1:39184090-39184109 None:intergenic 50.0%
ATGGTTTAAGAGGGGAAGCG+AGG - chr7_1:39184207-39184226 Msa1018720:intron 50.0%
TGGTTTAAGAGGGGAAGCGA+GGG - chr7_1:39184208-39184227 Msa1018720:intron 50.0%
TGCTTCCGTTCCAAGAGGAA+AGG + chr7_1:39184472-39184491 None:intergenic 50.0%
ATTATCGGATGGGGATGGCT+GGG - chr7_1:39185281-39185300 Msa1018720:intron 50.0%
GCAAAAGCTTCGGCACATTG+TGG - chr7_1:39185369-39185388 Msa1018720:intron 50.0%
! GGCGTTTGATTTCGCCTTTC+AGG - chr7_1:39188139-39188158 Msa1018720:intron 50.0%
! GATGCCTTGGCTGTTTCAGA+AGG - chr7_1:39188357-39188376 Msa1018720:intron 50.0%
ACCAACTGAGCTATGCTCAC+GGG + chr7_1:39188684-39188703 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr7_1:39188684-39188703 Msa1018720:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr7_1:39188748-39188767 None:intergenic 50.0%
GTGCCCCATAAATTCGTTGG+CGG - chr7_1:39189531-39189550 Msa1018720:five_prime_UTR 50.0%
! AGTGATGGCGTAAACGTTCG+TGG - chr7_1:39190030-39190049 Msa1018720:intron 50.0%
GCTTTCCAACATTCGGGTCC+AGG - chr7_1:39181280-39181299 Msa1018720:CDS 55.0%
TTGTGCCTGGACCCGAATGT+TGG + chr7_1:39181288-39181307 None:intergenic 55.0%
AACATTCGGGTCCAGGCACA+AGG - chr7_1:39181287-39181306 Msa1018720:CDS 55.0%
CGTGGGAATGATGTCCGGTT+TGG + chr7_1:39181856-39181875 None:intergenic 55.0%
TGTTGGAACTTCAGCCCCTC+AGG - chr7_1:39181891-39181910 Msa1018720:intron 55.0%
CATGAAGGAGGAAGAGGGCT+TGG - chr7_1:39182015-39182034 Msa1018720:intron 55.0%
GGTTTAAGAGGGGAAGCGAG+GGG - chr7_1:39184209-39184228 Msa1018720:intron 55.0%
CATTATCGGATGGGGATGGC+TGG - chr7_1:39185280-39185299 Msa1018720:intron 55.0%
TTATCGGATGGGGATGGCTG+GGG - chr7_1:39185282-39185301 Msa1018720:intron 55.0%
TGAGCAGCATCCACATCCTC+AGG + chr7_1:39187961-39187980 None:intergenic 55.0%
TCCCGTGAGCATAGCTCAGT+TGG - chr7_1:39188680-39188699 Msa1018720:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr7_1:39188746-39188765 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr7_1:39188747-39188766 None:intergenic 55.0%
CCAAAGATTTGGCGGGAGGG+AGG + chr7_1:39184086-39184105 None:intergenic 60.0%
CCTCCCTCCCGCCAAATCTT+TGG - chr7_1:39184083-39184102 Msa1018720:intron 60.0%
TTAAGAGGGGAAGCGAGGGG+AGG - chr7_1:39184212-39184231 Msa1018720:intron 60.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr7_1:39188734-39188753 None:intergenic 70.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr7_1:39188726-39188745 Msa1018720:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 39180953 39190436 39180953 ID=Msa1018720;Name=Msa1018720
chr7_1 mRNA 39180953 39190436 39180953 ID=Msa1018720-mRNA-1;Parent=Msa1018720;Name=Msa1018720-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1644|0.92|0.93|1|0.92|0.86|15|224|124
chr7_1 exon 39180953 39181357 39180953 ID=Msa1018720-mRNA-1:exon:7626;Parent=Msa1018720-mRNA-1
chr7_1 exon 39182188 39182281 39182188 ID=Msa1018720-mRNA-1:exon:7625;Parent=Msa1018720-mRNA-1
chr7_1 exon 39182383 39182555 39182383 ID=Msa1018720-mRNA-1:exon:7624;Parent=Msa1018720-mRNA-1
chr7_1 exon 39182722 39182817 39182722 ID=Msa1018720-mRNA-1:exon:7623;Parent=Msa1018720-mRNA-1
chr7_1 exon 39183011 39183228 39183011 ID=Msa1018720-mRNA-1:exon:7622;Parent=Msa1018720-mRNA-1
chr7_1 exon 39183382 39183497 39183382 ID=Msa1018720-mRNA-1:exon:7621;Parent=Msa1018720-mRNA-1
chr7_1 exon 39183751 39183988 39183751 ID=Msa1018720-mRNA-1:exon:7620;Parent=Msa1018720-mRNA-1
chr7_1 exon 39184122 39184209 39184122 ID=Msa1018720-mRNA-1:exon:7619;Parent=Msa1018720-mRNA-1
chr7_1 exon 39184325 39184402 39184325 ID=Msa1018720-mRNA-1:exon:7618;Parent=Msa1018720-mRNA-1
chr7_1 exon 39185502 39185577 39185502 ID=Msa1018720-mRNA-1:exon:7617;Parent=Msa1018720-mRNA-1
chr7_1 exon 39187763 39187821 39187763 ID=Msa1018720-mRNA-1:exon:7616;Parent=Msa1018720-mRNA-1
chr7_1 exon 39189341 39189389 39189341 ID=Msa1018720-mRNA-1:exon:7615;Parent=Msa1018720-mRNA-1
chr7_1 exon 39189477 39189617 39189477 ID=Msa1018720-mRNA-1:exon:7614;Parent=Msa1018720-mRNA-1
chr7_1 exon 39189833 39189888 39189833 ID=Msa1018720-mRNA-1:exon:7613;Parent=Msa1018720-mRNA-1
chr7_1 exon 39190081 39190436 39190081 ID=Msa1018720-mRNA-1:exon:7612;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39190081 39190436 39190081 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39189833 39189888 39189833 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39189477 39189617 39189477 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39189341 39189389 39189341 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39187763 39187821 39187763 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39185502 39185577 39185502 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39184325 39184402 39184325 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39184122 39184209 39184122 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39183751 39183988 39183751 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39183382 39183497 39183382 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39183011 39183228 39183011 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39182722 39182817 39182722 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 five_prime_UTR 39182483 39182555 39182483 ID=Msa1018720-mRNA-1:five_prime_utr;Parent=Msa1018720-mRNA-1
chr7_1 CDS 39182383 39182482 39182383 ID=Msa1018720-mRNA-1:cds;Parent=Msa1018720-mRNA-1
chr7_1 CDS 39182188 39182281 39182188 ID=Msa1018720-mRNA-1:cds;Parent=Msa1018720-mRNA-1
chr7_1 CDS 39181177 39181357 39181177 ID=Msa1018720-mRNA-1:cds;Parent=Msa1018720-mRNA-1
chr7_1 three_prime_UTR 39180953 39181176 39180953 ID=Msa1018720-mRNA-1:three_prime_utr;Parent=Msa1018720-mRNA-1
Gene Sequence

>Msa1018720

ATGGTTGTAACTATGTCTACCCCGAAGGATTATATAATTTCTTGCTTTACGTTAACAAAAAGTATAAAAATCCAAGAATTTACATCACTGAAAATGGTTGGAATTCCTTCTTTCAATATCCCAAATCCATTGAAAGACGAACATCGAACTGCTTACATCGCCGCACATATAAATGCTACCAAAGCAACAATTAATGATGGCGTAAACGTTCGTGGATTTTTTGCATGGGCAGCATTTGATACGTATGATTTTACCGATGGATATTCTAAACATATGGGGCTTTATCATGTCGATTTTGATGATAATCTCAAACGTATACCGACAAACACAGCTAAATGGTACAAAAACTATTTGACACTTGATTCGGTACACTAA
Protein sequence

>Msa1018720

MVVTMSTPKDYIISCFTLTKSIKIQEFTSLKMVGIPSFNIPNPLKDEHRTAYIAAHINATKATINDGVNVRGFFAWAAFDTYDFTDGYSKHMGLYHVDFDDNLKRIPTNTAKWYKNYLTLDSVH*