Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469040 | XP_003601875.1 | 96.585 | 820 | 15 | 3 | 1 | 815 | 1 | 812 | 0.0 | 1623 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469040 | sp|Q9NVU7|SDA1_HUMAN | 37.409 | 548 | 307 | 8 | 26 | 571 | 12 | 525 | 3.97e-112 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469040 | G7J2L9 | 96.585 | 820 | 15 | 3 | 1 | 815 | 1 | 812 | 0.0 | 1623 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0373860 | Msa0469040 | 0.873875 | 1.047044e-67 | -8.615850e-47 |
Msa0422840 | Msa0469040 | 0.848626 | 5.437220e-60 | -8.615850e-47 |
Msa0422920 | Msa0469040 | 0.849769 | 2.613310e-60 | -8.615850e-47 |
Msa0469040 | Msa0554290 | 0.801162 | 1.025335e-48 | -8.615850e-47 |
Msa0469040 | Msa0573140 | 0.809405 | 1.923387e-50 | -8.615850e-47 |
Msa0469040 | Msa0648780 | 0.801022 | 1.095603e-48 | -8.615850e-47 |
Msa0469040 | Msa1119100 | 0.806669 | 7.351763e-50 | -8.615850e-47 |
Msa0469040 | Msa1119200 | 0.805152 | 1.532379e-49 | -8.615850e-47 |
Msa0469040 | Msa1133400 | 0.807088 | 5.996661e-50 | -8.615850e-47 |
Msa0469040 | Msa1380410 | 0.800292 | 1.543544e-48 | -8.615850e-47 |
Msa0469040 | Msa1385810 | 0.807865 | 4.102448e-50 | -8.615850e-47 |
Msa0469040 | Msa1409260 | 0.803722 | 3.043176e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469040 | MtrunA17_Chr3g0123361 | 96.585 | 820 | 15 | 3 | 1 | 815 | 1 | 812 | 0.0 | 1623 |
Msa0469040 | MtrunA17_Chr4g0000571 | 47.162 | 511 | 191 | 9 | 19 | 520 | 20 | 460 | 4.84e-129 | 394 |
Msa0469040 | MtrunA17_Chr4g0000561 | 46.622 | 444 | 179 | 9 | 19 | 448 | 138 | 537 | 1.75e-112 | 353 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0469040 | AT1G13160.1 | 51.691 | 828 | 332 | 10 | 18 | 815 | 15 | 804 | 0.0 | 762 |
Msa0469040 | AT4G31520.1 | 47.313 | 763 | 302 | 12 | 88 | 815 | 1 | 698 | 0.0 | 643 |
Msa0469040 | AT4G31520.2 | 45.508 | 679 | 270 | 12 | 88 | 731 | 1 | 614 | 0.0 | 535 |
Find 197 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATACACTTTCGTTGTTTA+TGG | 0.108154 | 3_3:-70713072 | Msa0469040:CDS |
TGGCTTCATCCTTATGCTTT+TGG | 0.189883 | 3_3:+70712973 | None:intergenic |
CTCATGTGACTTCTTATATA+GGG | 0.264350 | 3_3:+70709091 | None:intergenic |
TCTCATGTGACTTCTTATAT+AGG | 0.264450 | 3_3:+70709090 | None:intergenic |
CACCTCAAGTTATTCTTAGA+AGG | 0.274420 | 3_3:-70712385 | Msa0469040:CDS |
AGAGAGGTGCTGAGGGTAAA+AGG | 0.276260 | 3_3:+70713308 | None:intergenic |
AGCTTTATCGGCAAGATCTT+TGG | 0.285756 | 3_3:+70713353 | None:intergenic |
TAAGCCTTTGGTCTTGCCTT+GGG | 0.288436 | 3_3:+70708876 | None:intergenic |
AGTTCGGATTCGTAGCCTTC+AGG | 0.288526 | 3_3:+70713480 | None:intergenic |
TGGGAGGAAAGCGTGGAAAT+AGG | 0.291046 | 3_3:-70707335 | Msa0469040:exon |
ATGAACTTCACTTCCATTTC+CGG | 0.293716 | 3_3:-70713399 | Msa0469040:CDS |
TTTATAGAATTTCTTTAGAT+TGG | 0.299879 | 3_3:-70707152 | Msa0469040:three_prime_UTR |
AAAAGTTTAACAACATTAAC+TGG | 0.315137 | 3_3:+70710021 | None:intergenic |
AGCAACTCAGCGAGTTTGTT+AGG | 0.319583 | 3_3:+70713279 | None:intergenic |
TAGAAGGGAGACGGTTTATA+AGG | 0.324057 | 3_3:-70712369 | Msa0469040:intron |
AGCGGCTGTCAAACAGAAAA+AGG | 0.332497 | 3_3:-70707894 | Msa0469040:intron |
TTTGATTGCAGCAGCGGTTC+AGG | 0.336211 | 3_3:-70709865 | Msa0469040:CDS |
CTGGTGGTGGCTACGTTTCA+TGG | 0.337870 | 3_3:+70713593 | None:intergenic |
TGAAGAGGATGGTGGGATTT+CGG | 0.354594 | 3_3:-70708550 | Msa0469040:CDS |
AAGAAATAAATTTCTTCCTC+TGG | 0.366191 | 3_3:+70707114 | None:intergenic |
AATTTGTAACATCTCGTTGA+TGG | 0.369737 | 3_3:+70709886 | None:intergenic |
TTCATCTTTGATTGAAGTGC+TGG | 0.370954 | 3_3:+70713510 | None:intergenic |
AAAGTGATAGCTCGAACAAT+TGG | 0.375067 | 3_3:-70710050 | Msa0469040:CDS |
ATAAGCCTTTGGTCTTGCCT+TGG | 0.384961 | 3_3:+70708875 | None:intergenic |
CCTTTAGTTCCTTGATCCTC+TGG | 0.385498 | 3_3:+70708316 | None:intergenic |
GGCTTCATCATCATCACTTC+CGG | 0.386181 | 3_3:+70708680 | None:intergenic |
GGTTCAGGCTTGCCATGATA+TGG | 0.390505 | 3_3:-70709850 | Msa0469040:intron |
GATGGTGATCTGCATATTCT+TGG | 0.390989 | 3_3:-70708516 | Msa0469040:CDS |
TTGACTTCTCCATAAGCCTT+TGG | 0.392390 | 3_3:+70708864 | None:intergenic |
AAGGCAAGACCAAAGGCTTA+TGG | 0.393421 | 3_3:-70708873 | Msa0469040:CDS |
AAGAATAACTTGAGGTGATT+CGG | 0.393544 | 3_3:+70712391 | None:intergenic |
TGCTTTCATCATCACTATCT+TGG | 0.393872 | 3_3:+70712429 | None:intergenic |
AATGTTGCGGCTGACGTTCC+TGG | 0.394316 | 3_3:-70708843 | Msa0469040:CDS |
CCTCCGTCGCGGCATGGCTC+TGG | 0.401059 | 3_3:+70713574 | None:intergenic |
GCTGCTCGAACACTTCCTTC+TGG | 0.402199 | 3_3:-70713249 | Msa0469040:CDS |
AGAGAGGAACATAGCTTTAT+CGG | 0.404843 | 3_3:+70713341 | None:intergenic |
GTCGTTGGAGATGCCGGAAA+TGG | 0.407008 | 3_3:+70713386 | None:intergenic |
GGGAGGAAAGCGTGGAAATA+GGG | 0.412726 | 3_3:-70707334 | Msa0469040:exon |
TGGATATATTTCTGAAGATA+AGG | 0.421960 | 3_3:+70709996 | None:intergenic |
CCCTTCACTGCTAATTAAGA+AGG | 0.422140 | 3_3:-70708919 | Msa0469040:CDS |
TGAATTGACTGCGGATTAAG+AGG | 0.422788 | 3_3:+70713457 | None:intergenic |
TGATTCACCATCATGATCTT+CGG | 0.432423 | 3_3:+70708659 | None:intergenic |
CCAGAGGATCAAGGAACTAA+AGG | 0.433159 | 3_3:-70708316 | Msa0469040:intron |
AGCTTCTCGTTGATTGCAGT+TGG | 0.434838 | 3_3:+70707219 | None:intergenic |
TATGTTTAGGCTATCACTGT+TGG | 0.451491 | 3_3:-70709507 | Msa0469040:intron |
AACAAGGGCTCAACTGCATC+AGG | 0.452014 | 3_3:+70709669 | None:intergenic |
CGGTATTATCACTGCCTAGC+TGG | 0.453796 | 3_3:+70708700 | None:intergenic |
AAATGAGCAGGAAGATGATC+AGG | 0.456808 | 3_3:-70708748 | Msa0469040:CDS |
CAGCTGCTGATTCAAGTCTC+CGG | 0.457694 | 3_3:-70708419 | Msa0469040:CDS |
AGGATAAAACAGCAGCGGTC+TGG | 0.462249 | 3_3:-70707370 | Msa0469040:CDS |
ATTGTTGTTGGAAGAGTTCA+AGG | 0.462630 | 3_3:+70713427 | None:intergenic |
TTTATGGAGCTTCAAACGTT+AGG | 0.463249 | 3_3:-70713056 | Msa0469040:CDS |
ATTTGTAACATCTCGTTGAT+GGG | 0.464321 | 3_3:+70709887 | None:intergenic |
GAAAATTACGCCAATGAACT+AGG | 0.464720 | 3_3:+70707089 | None:intergenic |
TTCTTTCTCTTTGCAACTAA+CGG | 0.465469 | 3_3:+70707418 | None:intergenic |
AAAAGGAGGTGAGGTGAGAG+AGG | 0.467153 | 3_3:+70713325 | None:intergenic |
GGTCTTGCCTTGGGGTCAGT+AGG | 0.471014 | 3_3:+70708885 | None:intergenic |
AAACCTGTGGATCTTTAAGA+TGG | 0.472028 | 3_3:+70710370 | None:intergenic |
CGGGCTTTGAAGAAGTTGGC+AGG | 0.472242 | 3_3:-70708399 | Msa0469040:CDS |
GGTGGGGTCGTTGGAGATGC+CGG | 0.472718 | 3_3:+70713380 | None:intergenic |
CTGTTGGAATAAATGCAGTC+AGG | 0.474637 | 3_3:-70709491 | Msa0469040:CDS |
TCGCGGCATGGCTCTGGTGG+TGG | 0.475743 | 3_3:+70713580 | None:intergenic |
ACTGCGGATTAAGAGGAGTT+CGG | 0.476230 | 3_3:+70713464 | None:intergenic |
TGCTAGCTGATGTACCTTGG+TGG | 0.479650 | 3_3:+70710496 | None:intergenic |
GCAAGATCTTTGGCGACGGT+GGG | 0.479776 | 3_3:+70713363 | None:intergenic |
TCCTTCTTAATTAGCAGTGA+AGG | 0.480554 | 3_3:+70708918 | None:intergenic |
TCACAAGCGCCCTCTTTGCC+CGG | 0.481814 | 3_3:+70712691 | None:intergenic |
AGCTGCTGATTCAAGTCTCC+GGG | 0.485711 | 3_3:-70708418 | Msa0469040:CDS |
GCAACTCAGCGAGTTTGTTA+GGG | 0.486274 | 3_3:+70713280 | None:intergenic |
GGATATATTTCTGAAGATAA+GGG | 0.490544 | 3_3:+70709997 | None:intergenic |
AAACAAACCTTGACGATGGA+TGG | 0.491961 | 3_3:+70712595 | None:intergenic |
GTTCGGATTCGTAGCCTTCA+GGG | 0.495722 | 3_3:+70713481 | None:intergenic |
AAACCTAGTTGATCAGAGCT+TGG | 0.498249 | 3_3:+70708145 | None:intergenic |
ACGTATGAACCAAAAGCATA+AGG | 0.500516 | 3_3:-70712982 | Msa0469040:CDS |
AAGTGATAGCTCGAACAATT+GGG | 0.501384 | 3_3:-70710049 | Msa0469040:CDS |
TTTGGCGACGGTGGGGTCGT+TGG | 0.501512 | 3_3:+70713371 | None:intergenic |
TGGGGTCAGTAGGCCTCCCT+CGG | 0.502050 | 3_3:+70708895 | None:intergenic |
GGATGAAGACCGGGCAAAGA+GGG | 0.502850 | 3_3:-70712700 | Msa0469040:CDS |
AGGTTGGCAATGGTTAGAGC+AGG | 0.507284 | 3_3:-70707947 | Msa0469040:CDS |
TCTCCGGGCTTTGAAGAAGT+TGG | 0.508552 | 3_3:-70708403 | Msa0469040:CDS |
GAAATGCAATGAGCGATTTG+AGG | 0.509530 | 3_3:-70710226 | Msa0469040:intron |
AGTTCATGGCGGATTGTTGT+TGG | 0.511020 | 3_3:+70713415 | None:intergenic |
TATAAGAAGTCACATGAGAA+AGG | 0.511774 | 3_3:-70709086 | Msa0469040:CDS |
GGCAAGATCTTTGGCGACGG+TGG | 0.512528 | 3_3:+70713362 | None:intergenic |
GGAAATGGAAGTGAAGTTCA+TGG | 0.515511 | 3_3:+70713401 | None:intergenic |
CTGCCAACTTCTTCAAAGCC+CGG | 0.516353 | 3_3:+70708400 | None:intergenic |
TTATCTTCAGAAATATATCC+AGG | 0.516944 | 3_3:-70709994 | Msa0469040:intron |
CCGTCGCGGCATGGCTCTGG+TGG | 0.517615 | 3_3:+70713577 | None:intergenic |
GTTGGCTTAACATAAAATAG+AGG | 0.517664 | 3_3:+70707237 | None:intergenic |
ATTTACAATTTGTTTAAACA+AGG | 0.521288 | 3_3:+70709653 | None:intergenic |
CAGTGAAGAGGCTGATGAAG+AGG | 0.523376 | 3_3:-70708565 | Msa0469040:CDS |
TATTGATGATGATGTTGAGC+AGG | 0.523614 | 3_3:-70708802 | Msa0469040:CDS |
GTTTGACAGCCGCTCGAGCA+TGG | 0.525793 | 3_3:+70707903 | None:intergenic |
GCTTAACAAGGAGGAGAGGT+TGG | 0.526219 | 3_3:-70707963 | Msa0469040:CDS |
AAGCCTTTGGTCTTGCCTTG+GGG | 0.527111 | 3_3:+70708877 | None:intergenic |
CTTAACATAAAATAGAGGTC+CGG | 0.528152 | 3_3:+70707242 | None:intergenic |
ACCTCAAGTTATTCTTAGAA+GGG | 0.528603 | 3_3:-70712384 | Msa0469040:CDS |
TGGTCTAAGTAACAAGCAAA+AGG | 0.529533 | 3_3:-70707458 | Msa0469040:CDS |
GATCCTCTGGAAGTCTGCAT+TGG | 0.533194 | 3_3:+70708329 | None:intergenic |
CAATATGCAGTACCATATCA+TGG | 0.533875 | 3_3:+70709838 | None:intergenic |
GAAATGCCTCCGTCGCGGCA+TGG | 0.534644 | 3_3:+70713568 | None:intergenic |
TACAAATTTGATTGCAGCAG+CGG | 0.536492 | 3_3:-70709871 | Msa0469040:CDS |
CTTCCTTCCATCCATCGTCA+AGG | 0.537262 | 3_3:-70712602 | Msa0469040:intron |
AGAACTGCATTAGCGCAGCA+CGG | 0.538011 | 3_3:-70708196 | Msa0469040:CDS |
TCATCTTTGATTGAAGTGCT+GGG | 0.538336 | 3_3:+70713511 | None:intergenic |
AGGCTGATGAAGAGGATGGT+GGG | 0.545198 | 3_3:-70708557 | Msa0469040:CDS |
CCACCAGAGCCATGCCGCGA+CGG | 0.547880 | 3_3:-70713577 | Msa0469040:CDS |
TGCAGACTTCCAGAGGATCA+AGG | 0.553115 | 3_3:-70708325 | Msa0469040:CDS |
ACGGAGGCATTTCTCCCCTC+CGG | 0.553911 | 3_3:-70713558 | Msa0469040:CDS |
ATTCCAAGCTCTGATCAACT+AGG | 0.555451 | 3_3:-70708148 | Msa0469040:CDS |
AGTTATTCTTAGAAGGGAGA+CGG | 0.556840 | 3_3:-70712378 | Msa0469040:CDS |
CAACCATCTTAAAGATCCAC+AGG | 0.558634 | 3_3:-70710373 | Msa0469040:intron |
AGAGCAGGGAGGGAGGAAAG+AGG | 0.560920 | 3_3:-70707932 | Msa0469040:CDS |
GCCCTGCCAGAAAATGAAGA+TGG | 0.561534 | 3_3:-70708360 | Msa0469040:CDS |
ATCTGCAACAACTCAGCACC+AGG | 0.561871 | 3_3:+70708825 | None:intergenic |
ATAGGGCAAGGTCTTGAAGT+AGG | 0.562189 | 3_3:+70709108 | None:intergenic |
CAAGAACTAAGATAGAGAAA+AGG | 0.563545 | 3_3:-70707390 | Msa0469040:CDS |
GAACTGCATTAGCGCAGCAC+GGG | 0.565852 | 3_3:-70708195 | Msa0469040:CDS |
CTAGGTTTAAAGCGAGTGGA+TGG | 0.570555 | 3_3:-70708130 | Msa0469040:CDS |
TTGTTGGAAGAGTTCAAGGG+AGG | 0.570603 | 3_3:+70713431 | None:intergenic |
CCTTCTTAATTAGCAGTGAA+GGG | 0.572476 | 3_3:+70708919 | None:intergenic |
AATAGCAAGAGGATGAAGAC+CGG | 0.575025 | 3_3:-70712710 | Msa0469040:intron |
ATTATCAGCATCATCACCAC+TGG | 0.575178 | 3_3:+70708602 | None:intergenic |
TATACTACTTGTTAATCGTG+AGG | 0.577763 | 3_3:-70713199 | Msa0469040:intron |
AGTTCTCATTCTGATGATTG+CGG | 0.578631 | 3_3:-70708777 | Msa0469040:CDS |
GGCAATGGTTAGAGCAGGGA+GGG | 0.578720 | 3_3:-70707942 | Msa0469040:CDS |
AACAACGTGGGAGGAAAGCG+TGG | 0.583188 | 3_3:-70707342 | Msa0469040:CDS |
GCTGAGGGTAAAAGGAGGTG+AGG | 0.584102 | 3_3:+70713316 | None:intergenic |
AAAAGCTTAACAAGGAGGAG+AGG | 0.586507 | 3_3:-70707967 | Msa0469040:CDS |
AAACCTTGACGATGGATGGA+AGG | 0.587340 | 3_3:+70712599 | None:intergenic |
AGGATGAAGACCGGGCAAAG+AGG | 0.587878 | 3_3:-70712701 | Msa0469040:CDS |
GATATGCCTGCGTATGCCAC+TGG | 0.588647 | 3_3:-70709466 | Msa0469040:intron |
CAAGGAGGAGAGGTTGGCAA+TGG | 0.589667 | 3_3:-70707957 | Msa0469040:CDS |
CAGCTAGGCAGTGATAATAC+CGG | 0.590821 | 3_3:-70708699 | Msa0469040:CDS |
CCAGAGCCATGCCGCGACGG+AGG | 0.592746 | 3_3:-70713574 | Msa0469040:CDS |
GTGACTTCTTATATAGGGCA+AGG | 0.593175 | 3_3:+70709096 | None:intergenic |
GAGGCTGATGAAGAGGATGG+TGG | 0.593619 | 3_3:-70708558 | Msa0469040:CDS |
TGTTGGAATAAATGCAGTCA+GGG | 0.594175 | 3_3:-70709490 | Msa0469040:CDS |
TTGCGGTTCAGAAAATGAGC+AGG | 0.597937 | 3_3:-70708760 | Msa0469040:CDS |
TTTCCAATGCAGACTTCCAG+AGG | 0.598028 | 3_3:-70708332 | Msa0469040:CDS |
TTTACAATTTGTTTAAACAA+GGG | 0.598053 | 3_3:+70709654 | None:intergenic |
AATGGTTAGAGCAGGGAGGG+AGG | 0.598243 | 3_3:-70707939 | Msa0469040:CDS |
ATTTCGGAACATGAAGGAGA+TGG | 0.601769 | 3_3:-70708534 | Msa0469040:CDS |
GGTGGGATTTCGGAACATGA+AGG | 0.604100 | 3_3:-70708540 | Msa0469040:CDS |
TCAACTAGGTTTAAAGCGAG+TGG | 0.604947 | 3_3:-70708134 | Msa0469040:CDS |
CAAGATCTTTGGCGACGGTG+GGG | 0.605254 | 3_3:+70713364 | None:intergenic |
ATCGGCAAGATCTTTGGCGA+CGG | 0.608165 | 3_3:+70713359 | None:intergenic |
AGAGCTACTTACTTCAAGCA+TGG | 0.609650 | 3_3:+70708105 | None:intergenic |
GGAATTCAGAGAGGTGCTGA+GGG | 0.610468 | 3_3:+70713301 | None:intergenic |
GTTAGTTGCAAAGAGAAAGA+AGG | 0.613009 | 3_3:-70707416 | Msa0469040:CDS |
GGGAATTCAGAGAGGTGCTG+AGG | 0.616172 | 3_3:+70713300 | None:intergenic |
AGGGAGGCCTACTGACCCCA+AGG | 0.616449 | 3_3:-70708892 | Msa0469040:CDS |
TTTGTAACATCTCGTTGATG+GGG | 0.624366 | 3_3:+70709888 | None:intergenic |
GGGCTTTGAAGAAGTTGGCA+GGG | 0.625113 | 3_3:-70708398 | Msa0469040:CDS |
TATGTGAGCTTCACAAGAGA+CGG | 0.625829 | 3_3:-70712665 | Msa0469040:CDS |
AAATCGTTACGAAGTCCAGA+AGG | 0.627630 | 3_3:+70713234 | None:intergenic |
AAAGAATGTTCTGAAGTGCA+CGG | 0.632826 | 3_3:+70712946 | None:intergenic |
TACTTACCAGTGGCATACGC+AGG | 0.634401 | 3_3:+70709460 | None:intergenic |
AGCTTCACAAGAGACGGACA+TGG | 0.637224 | 3_3:-70712659 | Msa0469040:CDS |
TCTGCATATTCTTGGAAGTG+TGG | 0.637853 | 3_3:-70708508 | Msa0469040:CDS |
AAGAGCGCGGATCATCTGAA+AGG | 0.638139 | 3_3:-70710422 | Msa0469040:CDS |
TGACCCCAAGGCAAGACCAA+AGG | 0.640319 | 3_3:-70708880 | Msa0469040:CDS |
ATAGCAAGAGGATGAAGACC+GGG | 0.645784 | 3_3:-70712709 | Msa0469040:intron |
GATTTGATTCTGCATTCCAG+AGG | 0.646076 | 3_3:-70707130 | Msa0469040:three_prime_UTR |
ACATGACCGCTCACGTCCAG+AGG | 0.646176 | 3_3:-70709622 | Msa0469040:intron |
TCTTTGATTGAAGTGCTGGG+AGG | 0.647190 | 3_3:+70713514 | None:intergenic |
TCTGACGATGACAACCAGCT+AGG | 0.648692 | 3_3:-70708714 | Msa0469040:CDS |
TGCTAATTAAGAAGGACCGA+GGG | 0.650296 | 3_3:-70708911 | Msa0469040:CDS |
TGATCTAGAAGACAGTGAAG+AGG | 0.650869 | 3_3:-70708577 | Msa0469040:CDS |
GGTTGGCAATGGTTAGAGCA+GGG | 0.652549 | 3_3:-70707946 | Msa0469040:CDS |
GAAGTTGGCAGGGACAACAA+TGG | 0.655026 | 3_3:-70708388 | Msa0469040:CDS |
CTGCTAATTAAGAAGGACCG+AGG | 0.659236 | 3_3:-70708912 | Msa0469040:CDS |
AGGACAGTACCATGCTCGAG+CGG | 0.659615 | 3_3:-70707912 | Msa0469040:CDS |
TTGTTGTTGGAAGAGTTCAA+GGG | 0.662039 | 3_3:+70713428 | None:intergenic |
CTGGTAAACAACAACGTGGG+AGG | 0.662104 | 3_3:-70707351 | Msa0469040:CDS |
AAGATGAAATGCGACCCTGA+AGG | 0.662503 | 3_3:-70713495 | Msa0469040:CDS |
TAATTAAGAAGGACCGAGGG+AGG | 0.664397 | 3_3:-70708908 | Msa0469040:CDS |
TGGCAATGGTTAGAGCAGGG+AGG | 0.665731 | 3_3:-70707943 | Msa0469040:CDS |
AGAAAAGGATAAAACAGCAG+CGG | 0.669573 | 3_3:-70707375 | Msa0469040:CDS |
AAGGGCTCAACTGCATCAGG+AGG | 0.671557 | 3_3:+70709672 | None:intergenic |
TTATGGAGAAGTCAATGTTG+CGG | 0.672631 | 3_3:-70708856 | Msa0469040:CDS |
AGTTGCAAAGAGAAAGAAGG+TGG | 0.672753 | 3_3:-70707413 | Msa0469040:CDS |
GGGGAGAAATGCCTCCGTCG+CGG | 0.674537 | 3_3:+70713563 | None:intergenic |
TAAAGACCTCTGGACGTGAG+CGG | 0.676998 | 3_3:+70709616 | None:intergenic |
TGATGATGAAAGCAGTGACG+AGG | 0.678657 | 3_3:-70712420 | Msa0469040:CDS |
TCTCATTACATTATTCCGAG+AGG | 0.680546 | 3_3:-70709042 | Msa0469040:intron |
GTTTGTTAGGGAATTCAGAG+AGG | 0.681328 | 3_3:+70713292 | None:intergenic |
GGGAGGAATTGAATTGACTG+CGG | 0.685428 | 3_3:+70713448 | None:intergenic |
CGGTCTGGTAAACAACAACG+TGG | 0.692778 | 3_3:-70707355 | Msa0469040:CDS |
GGATCTTTAAGATGGTTGAG+TGG | 0.692797 | 3_3:+70710378 | None:intergenic |
GAAGAGGCTGATGAAGAGGA+TGG | 0.693614 | 3_3:-70708561 | Msa0469040:CDS |
TCCCTTCTAAGAATAACTTG+AGG | 0.695578 | 3_3:+70712383 | None:intergenic |
AGTTCTGATTACGAAACCAG+TGG | 0.696679 | 3_3:-70708618 | Msa0469040:CDS |
GATGAAGCCGAAGATCATGA+TGG | 0.710456 | 3_3:-70708666 | Msa0469040:CDS |
GAGGTGCTGAGGGTAAAAGG+AGG | 0.711938 | 3_3:+70713311 | None:intergenic |
GGTCTGGTAAACAACAACGT+GGG | 0.766215 | 3_3:-70707354 | Msa0469040:CDS |
AATGGAAGTGAAGTTCATGG+CGG | 0.785076 | 3_3:+70713404 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTTGAAGAAATAATT+TGG | - | chr3_3:70709083-70709102 | Msa0469040:CDS | 10.0% |
!! | TATATTTGAAGAAATAATTT+GGG | - | chr3_3:70709084-70709103 | Msa0469040:CDS | 10.0% |
!! | ATATTTGAAGAAATAATTTG+GGG | - | chr3_3:70709085-70709104 | Msa0469040:CDS | 15.0% |
!!! | GTTTTCATATACAATAATAT+AGG | + | chr3_3:70710526-70710545 | None:intergenic | 15.0% |
!!! | TTTACAATTTGTTTAAACAA+GGG | + | chr3_3:70711046-70711065 | None:intergenic | 15.0% |
!!! | ATTTACAATTTGTTTAAACA+AGG | + | chr3_3:70711047-70711066 | None:intergenic | 15.0% |
!!! | ATTTGTTTACTTTTATTCAT+AGG | - | chr3_3:70712464-70712483 | Msa0469040:CDS | 15.0% |
!!! | ATATTTTTAAAAATGAGCAA+GGG | + | chr3_3:70712840-70712859 | None:intergenic | 15.0% |
!!! | AATATTTTTAAAAATGAGCA+AGG | + | chr3_3:70712841-70712860 | None:intergenic | 15.0% |
!! | TTTATAGAATTTCTTTAGAT+TGG | - | chr3_3:70713545-70713564 | Msa0469040:CDS | 15.0% |
!!! | TTTTTTTCTTTTGTTCACTT+TGG | - | chr3_3:70708122-70708141 | Msa0469040:CDS | 20.0% |
!! | ATTTACGAACAAAAGATATT+TGG | + | chr3_3:70708616-70708635 | None:intergenic | 20.0% |
!!! | TTCTTTTCTTCTAACTTATA+AGG | + | chr3_3:70708805-70708824 | None:intergenic | 20.0% |
!! | TTTAATTAACAAGAAATGCT+TGG | - | chr3_3:70709815-70709834 | Msa0469040:intron | 20.0% |
!!! | AATCACACTTTCAAAATTTT+AGG | - | chr3_3:70710607-70710626 | Msa0469040:intron | 20.0% |
!! | AAAAGTTTAACAACATTAAC+TGG | + | chr3_3:70710679-70710698 | None:intergenic | 20.0% |
!! | TAGTTAAATTTGGTAAACTT+TGG | - | chr3_3:70710732-70710751 | Msa0469040:intron | 20.0% |
!!! | TTAATTGTCTTATGCATTTT+TGG | - | chr3_3:70712884-70712903 | Msa0469040:intron | 20.0% |
!! | AAAAAAATACACATCCATAT+TGG | + | chr3_3:70713202-70713221 | None:intergenic | 20.0% |
!!! | TTTTTTTTGTATTGAACAGA+CGG | - | chr3_3:70713215-70713234 | Msa0469040:CDS | 20.0% |
! | GGAAATGGAAATTTGTATAT+TGG | - | chr3_3:70707556-70707575 | Msa0469040:intron | 25.0% |
!!! | TTTCATTTTTTTGTTGTGTG+TGG | - | chr3_3:70707579-70707598 | Msa0469040:intron | 25.0% |
!!! | ACGTTGTTTGGTTTTTTTAT+AGG | - | chr3_3:70707804-70707823 | Msa0469040:intron | 25.0% |
! | TGTAAAATTTGAATAGCAAG+AGG | - | chr3_3:70707976-70707995 | Msa0469040:CDS | 25.0% |
!!! | ATATTGGCATTGATTATCTA+AGG | - | chr3_3:70708484-70708503 | Msa0469040:CDS | 25.0% |
! | TATATTTAGAAGTTCAGAAG+AGG | - | chr3_3:70708508-70708527 | Msa0469040:CDS | 25.0% |
! | ATATTTAGAAGTTCAGAAGA+GGG | - | chr3_3:70708509-70708528 | Msa0469040:CDS | 25.0% |
! | ATTTAAACTTGAAATGCCAT+TGG | + | chr3_3:70708671-70708690 | None:intergenic | 25.0% |
!! | CAAGTTAGCTAAAATTTTCA+AGG | - | chr3_3:70708982-70709001 | Msa0469040:intron | 25.0% |
! | TTGCTTATTTGCTCATTTAA+GGG | + | chr3_3:70709023-70709042 | None:intergenic | 25.0% |
!!! | TTCATAGAAGCTTTAGAATT+AGG | - | chr3_3:70709057-70709076 | Msa0469040:CDS | 25.0% |
! | TGATGTGGTATTATATCATT+TGG | - | chr3_3:70709144-70709163 | Msa0469040:intron | 25.0% |
! | GATGTGGTATTATATCATTT+GGG | - | chr3_3:70709145-70709164 | Msa0469040:intron | 25.0% |
! | TTATATCATTTGGGTAGTAT+AGG | - | chr3_3:70709154-70709173 | Msa0469040:intron | 25.0% |
! | TATATCATTTGGGTAGTATA+GGG | - | chr3_3:70709155-70709174 | Msa0469040:intron | 25.0% |
! | ATGTTAACATTCAACTCAAA+TGG | + | chr3_3:70709295-70709314 | None:intergenic | 25.0% |
! | AATTTACGTTCTATTCACTT+AGG | - | chr3_3:70709326-70709345 | Msa0469040:intron | 25.0% |
! | AATACAAAATCCTCCTAATT+TGG | - | chr3_3:70709453-70709472 | Msa0469040:intron | 25.0% |
! | ATACAAAATCCTCCTAATTT+GGG | - | chr3_3:70709454-70709473 | Msa0469040:intron | 25.0% |
! | AACTTAGTTATCAGTAATCA+TGG | - | chr3_3:70710152-70710171 | Msa0469040:intron | 25.0% |
! | ACTTAGTTATCAGTAATCAT+GGG | - | chr3_3:70710153-70710172 | Msa0469040:intron | 25.0% |
!! | GGTCATTCTTACAAAATTTT+AGG | - | chr3_3:70710174-70710193 | Msa0469040:intron | 25.0% |
! | CTAGCAAAAAGAAAAAGAAA+AGG | - | chr3_3:70710218-70710237 | Msa0469040:intron | 25.0% |
!! | TTTTCATGTTACGTATTATG+CGG | + | chr3_3:70710252-70710271 | None:intergenic | 25.0% |
! | TACAAAAATTTACAAACCTG+TGG | + | chr3_3:70710343-70710362 | None:intergenic | 25.0% |
! | AATCATTGGAAGATTTCAAA+AGG | + | chr3_3:70710557-70710576 | None:intergenic | 25.0% |
! | ATTGTACAAACCAGTAAATA+TGG | + | chr3_3:70710590-70710609 | None:intergenic | 25.0% |
!! | GGATATATTTCTGAAGATAA+GGG | + | chr3_3:70710703-70710722 | None:intergenic | 25.0% |
!! | TGGATATATTTCTGAAGATA+AGG | + | chr3_3:70710704-70710723 | None:intergenic | 25.0% |
! | TTATCTTCAGAAATATATCC+AGG | - | chr3_3:70710703-70710722 | Msa0469040:intron | 25.0% |
! | CAAATTTAACTAAAGATACC+TGG | + | chr3_3:70710724-70710743 | None:intergenic | 25.0% |
! | CAGGTATCTTTAGTTAAATT+TGG | - | chr3_3:70710722-70710741 | Msa0469040:intron | 25.0% |
! | TTTGTATCCTATTTCATTCA+AGG | - | chr3_3:70710981-70711000 | Msa0469040:intron | 25.0% |
! | AATAACACCTTGAATGAAAT+AGG | + | chr3_3:70710991-70711010 | None:intergenic | 25.0% |
!!! | TTCATTCAAGGTGTTATTTT+TGG | - | chr3_3:70710993-70711012 | Msa0469040:intron | 25.0% |
! | CACAATCAAAATATCAACAT+AGG | + | chr3_3:70711547-70711566 | None:intergenic | 25.0% |
!!! | CTATGTTGATATTTTGATTG+TGG | - | chr3_3:70711545-70711564 | Msa0469040:intron | 25.0% |
!!! | ATTTTAGCTTACTGAATAAG+AGG | + | chr3_3:70712415-70712434 | None:intergenic | 25.0% |
! | TGTAAAGAAAAAGCTTAACA+AGG | - | chr3_3:70712722-70712741 | Msa0469040:intron | 25.0% |
!! | AATTCTAGATGTCATGTTTT+GGG | + | chr3_3:70712927-70712946 | None:intergenic | 25.0% |
!! | AAATTCTAGATGTCATGTTT+TGG | + | chr3_3:70712928-70712947 | None:intergenic | 25.0% |
! | TGTTATATTTGGAGAATCAT+TGG | + | chr3_3:70712960-70712979 | None:intergenic | 25.0% |
!!! | TTTTTTTGTATTGAACAGAC+GGG | - | chr3_3:70713216-70713235 | Msa0469040:CDS | 25.0% |
!!! | AGAATGTACCATTTTTTTTC+CGG | - | chr3_3:70713436-70713455 | Msa0469040:CDS | 25.0% |
! | AAGAAATAAATTTCTTCCTC+TGG | + | chr3_3:70713586-70713605 | None:intergenic | 25.0% |
!! | TATTTCTTTTCCTAGTTCAT+TGG | - | chr3_3:70713598-70713617 | Msa0469040:exon | 25.0% |
! | TATACTACTTGTTAATCGTG+AGG | - | chr3_3:70707498-70707517 | Msa0469040:intron | 30.0% |
AGATACACTTTCGTTGTTTA+TGG | - | chr3_3:70707625-70707644 | Msa0469040:intron | 30.0% | |
! | GATTGTGTTTTGTGTTTGTT+TGG | - | chr3_3:70707826-70707845 | Msa0469040:intron | 30.0% |
!!! | ATGCTTGTTTGTGTTTTTTC+TGG | - | chr3_3:70707868-70707887 | Msa0469040:intron | 30.0% |
CTAACTTAGAATTGTGTGTT+TGG | + | chr3_3:70707946-70707965 | None:intergenic | 30.0% | |
CACAATTCTAAGTTAGTGAA+TGG | - | chr3_3:70707950-70707969 | Msa0469040:CDS | 30.0% | |
AAAAAAACAAACCTTGACGA+TGG | + | chr3_3:70708109-70708128 | None:intergenic | 30.0% | |
AAGAATAACTTGAGGTGATT+CGG | + | chr3_3:70708309-70708328 | None:intergenic | 30.0% | |
ACCTCAAGTTATTCTTAGAA+GGG | - | chr3_3:70708313-70708332 | Msa0469040:intron | 30.0% | |
! | TACTCTGTTTGAGTTTAGAA+AGG | + | chr3_3:70708441-70708460 | None:intergenic | 30.0% |
!! | TAAGTTGATATGCACGATAT+TGG | - | chr3_3:70708468-70708487 | Msa0469040:CDS | 30.0% |
TGGCACTTCCAAAAAAATAA+GGG | + | chr3_3:70708651-70708670 | None:intergenic | 30.0% | |
TTGGCACTTCCAAAAAAATA+AGG | + | chr3_3:70708652-70708671 | None:intergenic | 30.0% | |
!!! | TATTTTTTTGGAAGTGCCAA+TGG | - | chr3_3:70708652-70708671 | Msa0469040:CDS | 30.0% |
TTATTTATGAACTTGCGTAG+TGG | + | chr3_3:70708717-70708736 | None:intergenic | 30.0% | |
AAGAAAAGAATTCAGATCGA+AGG | - | chr3_3:70708815-70708834 | Msa0469040:CDS | 30.0% | |
TGCATGTGCAAAGTTAAATA+TGG | + | chr3_3:70708861-70708880 | None:intergenic | 30.0% | |
! | TATTTAACTTTGCACATGCA+TGG | - | chr3_3:70708861-70708880 | Msa0469040:CDS | 30.0% |
GCTATGTATTCTATTTACCA+AGG | + | chr3_3:70708930-70708949 | None:intergenic | 30.0% | |
CTTGCTTATTTGCTCATTTA+AGG | + | chr3_3:70709024-70709043 | None:intergenic | 30.0% | |
GTGATTAATATCGAATGATG+TGG | - | chr3_3:70709129-70709148 | Msa0469040:intron | 30.0% | |
ATATCATTTGGGTAGTATAG+GGG | - | chr3_3:70709156-70709175 | Msa0469040:intron | 30.0% | |
GATTAGATAGACAAGAAAAG+TGG | - | chr3_3:70709194-70709213 | Msa0469040:intron | 30.0% | |
!! | ATAGCTTTGGAAAAAAAGGA+AGG | - | chr3_3:70709382-70709401 | Msa0469040:intron | 30.0% |
TACAAAATCCTCCTAATTTG+GGG | - | chr3_3:70709455-70709474 | Msa0469040:intron | 30.0% | |
GAACTCAAAAATTGTATTGG+AGG | - | chr3_3:70709478-70709497 | Msa0469040:CDS | 30.0% | |
TTCAATCTCTGTATATGTGT+GGG | + | chr3_3:70709760-70709779 | None:intergenic | 30.0% | |
TAACAAGAAATGCTTGGTTA+TGG | - | chr3_3:70709821-70709840 | Msa0469040:intron | 30.0% | |
TCTAGTATGAAAGTCGAAAA+AGG | + | chr3_3:70709914-70709933 | None:intergenic | 30.0% | |
TCATATGAGATAAGGATGTT+AGG | - | chr3_3:70710003-70710022 | Msa0469040:CDS | 30.0% | |
CATAGAATCAAGATGTTGAT+TGG | + | chr3_3:70710409-70710428 | None:intergenic | 30.0% | |
TTGATTCTATGTGATCTACA+GGG | - | chr3_3:70710418-70710437 | Msa0469040:CDS | 30.0% | |
! | ATAATATAGGCATGTTGCTT+TGG | + | chr3_3:70710513-70710532 | None:intergenic | 30.0% |
ATGGAGTCTTCAATAATCAT+TGG | + | chr3_3:70710571-70710590 | None:intergenic | 30.0% | |
ATTGAAGACTCCATATTTAC+TGG | - | chr3_3:70710577-70710596 | Msa0469040:intron | 30.0% | |
ATTTGTAACATCTCGTTGAT+GGG | + | chr3_3:70710813-70710832 | None:intergenic | 30.0% | |
AATTTGTAACATCTCGTTGA+TGG | + | chr3_3:70710814-70710833 | None:intergenic | 30.0% | |
!!! | ACCAGTTTTGTTTTTATCGT+TGG | - | chr3_3:70710894-70710913 | Msa0469040:intron | 30.0% |
ACCAACGATAAAAACAAAAC+TGG | + | chr3_3:70710898-70710917 | None:intergenic | 30.0% | |
!!! | AGTTTTGTTTTTATCGTTGG+TGG | - | chr3_3:70710897-70710916 | Msa0469040:intron | 30.0% |
TATCATTTGATATAGTGCTG+CGG | - | chr3_3:70711116-70711135 | Msa0469040:intron | 30.0% | |
! | TGAGTTTGGTTGATATGTTT+AGG | - | chr3_3:70711177-70711196 | Msa0469040:intron | 30.0% |
AAAATTTCAGTACTTACCAG+TGG | + | chr3_3:70711250-70711269 | None:intergenic | 30.0% | |
!!! | TGGTAAGTACTGAAATTTTC+CGG | - | chr3_3:70711251-70711270 | Msa0469040:intron | 30.0% |
GCAAAATGCATATATTTCCA+AGG | + | chr3_3:70711278-70711297 | None:intergenic | 30.0% | |
ACTAATGAAAGAACACATGT+AGG | + | chr3_3:70711405-70711424 | None:intergenic | 30.0% | |
!!! | CAGGATATAGTTTTAAGCAA+GGG | + | chr3_3:70711489-70711508 | None:intergenic | 30.0% |
!!! | ACAGGATATAGTTTTAAGCA+AGG | + | chr3_3:70711490-70711509 | None:intergenic | 30.0% |
ATGAAGTTAACAGAAAACAC+AGG | + | chr3_3:70711508-70711527 | None:intergenic | 30.0% | |
AAAATATCAACATAGGACGA+AGG | + | chr3_3:70711540-70711559 | None:intergenic | 30.0% | |
CTCATGTGACTTCTTATATA+GGG | + | chr3_3:70711609-70711628 | None:intergenic | 30.0% | |
TCTCATGTGACTTCTTATAT+AGG | + | chr3_3:70711610-70711629 | None:intergenic | 30.0% | |
TATAAGAAGTCACATGAGAA+AGG | - | chr3_3:70711611-70711630 | Msa0469040:intron | 30.0% | |
CAAACAACATTAATCAAGTG+TGG | + | chr3_3:70711746-70711765 | None:intergenic | 30.0% | |
! | GATTAATGTTGTTTGTTTGC+AGG | - | chr3_3:70711751-70711770 | Msa0469040:intron | 30.0% |
TAAAAGACTCAGCAAAAAAG+AGG | - | chr3_3:70712227-70712246 | Msa0469040:intron | 30.0% | |
! | AGAATTCCATCTTCATTTTC+TGG | + | chr3_3:70712346-70712365 | None:intergenic | 30.0% |
CATGACAAAAAGAGAAAACA+CGG | - | chr3_3:70712657-70712676 | Msa0469040:CDS | 30.0% | |
ATGACAAAAAGAGAAAACAC+GGG | - | chr3_3:70712658-70712677 | Msa0469040:CDS | 30.0% | |
AAAGAAAAAGCTTAACAAGG+AGG | - | chr3_3:70712725-70712744 | Msa0469040:intron | 30.0% | |
ATTCTCCAAATATAACAGTG+TGG | - | chr3_3:70712963-70712982 | Msa0469040:CDS | 30.0% | |
TATTGCCACACTGTTATATT+TGG | + | chr3_3:70712971-70712990 | None:intergenic | 30.0% | |
! | TGTGGTTCTGTTTATCAATT+TGG | + | chr3_3:70713028-70713047 | None:intergenic | 30.0% |
!! | TAACATTTTGATCAACTGAC+TGG | + | chr3_3:70713060-70713079 | None:intergenic | 30.0% |
TTCTTTCTCTTTGCAACTAA+CGG | + | chr3_3:70713282-70713301 | None:intergenic | 30.0% | |
CAAGAACTAAGATAGAGAAA+AGG | - | chr3_3:70713307-70713326 | Msa0469040:CDS | 30.0% | |
CTTAACATAAAATAGAGGTC+CGG | + | chr3_3:70713458-70713477 | None:intergenic | 30.0% | |
! | GTTGGCTTAACATAAAATAG+AGG | + | chr3_3:70713463-70713482 | None:intergenic | 30.0% |
! | TCATCTTTGATTGAAGTGCT+GGG | + | chr3_3:70707189-70707208 | None:intergenic | 35.0% |
TTCATCTTTGATTGAAGTGC+TGG | + | chr3_3:70707190-70707209 | None:intergenic | 35.0% | |
! | TTGTTGTTGGAAGAGTTCAA+GGG | + | chr3_3:70707272-70707291 | None:intergenic | 35.0% |
! | ATTGTTGTTGGAAGAGTTCA+AGG | + | chr3_3:70707273-70707292 | None:intergenic | 35.0% |
ATGAACTTCACTTCCATTTC+CGG | - | chr3_3:70707298-70707317 | Msa0469040:three_prime_UTR | 35.0% | |
!! | AGAGAGGAACATAGCTTTAT+CGG | + | chr3_3:70707359-70707378 | None:intergenic | 35.0% |
!! | TGTTGAGTTTGCTATGTGAT+TGG | - | chr3_3:70707535-70707554 | Msa0469040:intron | 35.0% |
!! | GTTTGCTATGTGATTGGAAA+TGG | - | chr3_3:70707541-70707560 | Msa0469040:intron | 35.0% |
TTTATGGAGCTTCAAACGTT+AGG | - | chr3_3:70707641-70707660 | Msa0469040:intron | 35.0% | |
GTTAGGTGATAAAAAGCTGA+GGG | - | chr3_3:70707658-70707677 | Msa0469040:intron | 35.0% | |
! | ACGTATGAACCAAAAGCATA+AGG | - | chr3_3:70707715-70707734 | Msa0469040:intron | 35.0% |
!! | AAAGAATGTTCTGAAGTGCA+CGG | + | chr3_3:70707754-70707773 | None:intergenic | 35.0% |
! | CATTCTTTTTGTCATGTTGC+AGG | - | chr3_3:70707766-70707785 | Msa0469040:intron | 35.0% |
! | GTCAATGTTTCTACGTTGTT+TGG | - | chr3_3:70707792-70707811 | Msa0469040:intron | 35.0% |
TGCTTTCATCATCACTATCT+TGG | + | chr3_3:70708271-70708290 | None:intergenic | 35.0% | |
CACCTCAAGTTATTCTTAGA+AGG | - | chr3_3:70708312-70708331 | Msa0469040:intron | 35.0% | |
! | TCCCTTCTAAGAATAACTTG+AGG | + | chr3_3:70708317-70708336 | None:intergenic | 35.0% |
AGTTATTCTTAGAAGGGAGA+CGG | - | chr3_3:70708319-70708338 | Msa0469040:CDS | 35.0% | |
!! | GAAATTTTGATGCAGCGAAA+AGG | - | chr3_3:70708543-70708562 | Msa0469040:CDS | 35.0% |
TGCAACAAAGATCAGATCTA+CGG | - | chr3_3:70708737-70708756 | Msa0469040:CDS | 35.0% | |
! | AAGAAATAATTTGGGGCTGA+GGG | - | chr3_3:70709092-70709111 | Msa0469040:CDS | 35.0% |
GATATGACTTCAGATGAAGA+TGG | + | chr3_3:70709247-70709266 | None:intergenic | 35.0% | |
!! | TTAGGCTTTGTTTGTGAGTT+TGG | - | chr3_3:70709344-70709363 | Msa0469040:intron | 35.0% |
ACAAAATCCTCCTAATTTGG+GGG | - | chr3_3:70709456-70709475 | Msa0469040:intron | 35.0% | |
!!! | TTTTTGAGTTCCCCCAAATT+AGG | + | chr3_3:70709469-70709488 | None:intergenic | 35.0% |
GGGGAACTCAAAAATTGTAT+TGG | - | chr3_3:70709475-70709494 | Msa0469040:CDS | 35.0% | |
CTCAAAAATTGTATTGGAGG+AGG | - | chr3_3:70709481-70709500 | Msa0469040:CDS | 35.0% | |
! | ATTGTATTGGAGGAGGATTT+TGG | - | chr3_3:70709488-70709507 | Msa0469040:CDS | 35.0% |
TTAAATTGCGTTCTCTAGTC+CGG | - | chr3_3:70709731-70709750 | Msa0469040:intron | 35.0% | |
GTTCAATCTCTGTATATGTG+TGG | + | chr3_3:70709761-70709780 | None:intergenic | 35.0% | |
TGGCAAATATCACTTATACG+AGG | - | chr3_3:70709841-70709860 | Msa0469040:intron | 35.0% | |
GAGGAAAAAAAATGTCTGAC+AGG | - | chr3_3:70709860-70709879 | Msa0469040:CDS | 35.0% | |
AACTTGAAGCTAAGTTTGGA+GGG | + | chr3_3:70709963-70709982 | None:intergenic | 35.0% | |
AAGGAACTTGAAGCTAAGTT+TGG | + | chr3_3:70709967-70709986 | None:intergenic | 35.0% | |
AACTTGAAGCTAAGTTTGGA+TGG | + | chr3_3:70709963-70709982 | None:intergenic | 35.0% | |
AAGGAACTTGAAGCTAAGTT+TGG | + | chr3_3:70709967-70709986 | None:intergenic | 35.0% | |
AACATGAAAAAGAAAGAGCG+CGG | - | chr3_3:70710262-70710281 | Msa0469040:intron | 35.0% | |
! | AAACCTGTGGATCTTTAAGA+TGG | + | chr3_3:70710330-70710349 | None:intergenic | 35.0% |
CTTGATTCTATGTGATCTAC+AGG | - | chr3_3:70710417-70710436 | Msa0469040:CDS | 35.0% | |
AAAGTGATAGCTCGAACAAT+TGG | - | chr3_3:70710647-70710666 | Msa0469040:intron | 35.0% | |
AAGTGATAGCTCGAACAATT+GGG | - | chr3_3:70710648-70710667 | Msa0469040:intron | 35.0% | |
TTTGTAACATCTCGTTGATG+GGG | + | chr3_3:70710812-70710831 | None:intergenic | 35.0% | |
TACAAATTTGATTGCAGCAG+CGG | - | chr3_3:70710826-70710845 | Msa0469040:intron | 35.0% | |
CAATATGCAGTACCATATCA+TGG | + | chr3_3:70710862-70710881 | None:intergenic | 35.0% | |
!!! | AAGGTGTTATTTTTGGATGC+AGG | - | chr3_3:70711000-70711019 | Msa0469040:intron | 35.0% |
! | TGCGGACTTTTTATTATGAC+AGG | - | chr3_3:70711134-70711153 | Msa0469040:intron | 35.0% |
TATGTTTAGGCTATCACTGT+TGG | - | chr3_3:70711190-70711209 | Msa0469040:intron | 35.0% | |
TGTTGGAATAAATGCAGTCA+GGG | - | chr3_3:70711207-70711226 | Msa0469040:intron | 35.0% | |
ATGCATATATTTCCAAGGAC+CGG | + | chr3_3:70711273-70711292 | None:intergenic | 35.0% | |
TAGTTAAAACCAACCCTTGT+TGG | + | chr3_3:70711335-70711354 | None:intergenic | 35.0% | |
!!! | AAGGGTTGGTTTTAACTAGT+AGG | - | chr3_3:70711337-70711356 | Msa0469040:intron | 35.0% |
! | CATACTGAACAAAGTACTCA+TGG | + | chr3_3:70711435-70711454 | None:intergenic | 35.0% |
TCTCATTACATTATTCCGAG+AGG | - | chr3_3:70711655-70711674 | Msa0469040:intron | 35.0% | |
! | ATTACCGTAACTCTTTTGTG+TGG | - | chr3_3:70711680-70711699 | Msa0469040:intron | 35.0% |
! | TTACCGTAACTCTTTTGTGT+GGG | - | chr3_3:70711681-70711700 | Msa0469040:intron | 35.0% |
CCTTCTTAATTAGCAGTGAA+GGG | + | chr3_3:70711781-70711800 | None:intergenic | 35.0% | |
TCCTTCTTAATTAGCAGTGA+AGG | + | chr3_3:70711782-70711801 | None:intergenic | 35.0% | |
TTATGGAGAAGTCAATGTTG+CGG | - | chr3_3:70711841-70711860 | Msa0469040:intron | 35.0% | |
!! | TATTGATGATGATGTTGAGC+AGG | - | chr3_3:70711895-70711914 | Msa0469040:intron | 35.0% |
AGTTCTCATTCTGATGATTG+CGG | - | chr3_3:70711920-70711939 | Msa0469040:intron | 35.0% | |
TGATTCACCATCATGATCTT+CGG | + | chr3_3:70712041-70712060 | None:intergenic | 35.0% | |
! | CGTGTTTTCTCTTTTTGTCA+TGG | + | chr3_3:70712659-70712678 | None:intergenic | 35.0% |
TATTTATGTGTGCACCTTCT+AGG | - | chr3_3:70712695-70712714 | Msa0469040:CDS | 35.0% | |
TTTCTTTACATGAGCCTAGA+AGG | + | chr3_3:70712712-70712731 | None:intergenic | 35.0% | |
!! | TTTGGAGAATCATTGGTTTG+TGG | + | chr3_3:70712953-70712972 | None:intergenic | 35.0% |
!!! | ACTGACTGGTTTTAATAGTG+TGG | + | chr3_3:70713046-70713065 | None:intergenic | 35.0% |
GATTGCACTCTAATCCAATA+TGG | - | chr3_3:70713185-70713204 | Msa0469040:intron | 35.0% | |
TGGTCTAAGTAACAAGCAAA+AGG | - | chr3_3:70713239-70713258 | Msa0469040:CDS | 35.0% | |
GTTAGTTGCAAAGAGAAAGA+AGG | - | chr3_3:70713281-70713300 | Msa0469040:CDS | 35.0% | |
AGAAAAGGATAAAACAGCAG+CGG | - | chr3_3:70713322-70713341 | Msa0469040:CDS | 35.0% | |
ATAGAGGTCCGGAAAAAAAA+TGG | + | chr3_3:70713447-70713466 | None:intergenic | 35.0% | |
! | TTTTCGGATTTTAGACCGGA+GGG | + | chr3_3:70707157-70707176 | None:intergenic | 40.0% |
! | GAGCTTTTCGGATTTTAGAC+CGG | + | chr3_3:70707161-70707180 | None:intergenic | 40.0% |
! | TGAATTGACTGCGGATTAAG+AGG | + | chr3_3:70707243-70707262 | None:intergenic | 40.0% |
AATGGAAGTGAAGTTCATGG+CGG | + | chr3_3:70707296-70707315 | None:intergenic | 40.0% | |
GGAAATGGAAGTGAAGTTCA+TGG | + | chr3_3:70707299-70707318 | None:intergenic | 40.0% | |
! | AGCTTTATCGGCAAGATCTT+TGG | + | chr3_3:70707347-70707366 | None:intergenic | 40.0% |
! | GTTTGTTAGGGAATTCAGAG+AGG | + | chr3_3:70707408-70707427 | None:intergenic | 40.0% |
AAATCGTTACGAAGTCCAGA+AGG | + | chr3_3:70707466-70707485 | None:intergenic | 40.0% | |
CGTTAGGTGATAAAAAGCTG+AGG | - | chr3_3:70707657-70707676 | Msa0469040:intron | 40.0% | |
! | TGGCTTCATCCTTATGCTTT+TGG | + | chr3_3:70707727-70707746 | None:intergenic | 40.0% |
AATAGCAAGAGGATGAAGAC+CGG | - | chr3_3:70707987-70708006 | Msa0469040:intron | 40.0% | |
TATGTGAGCTTCACAAGAGA+CGG | - | chr3_3:70708032-70708051 | Msa0469040:intron | 40.0% | |
AAACAAACCTTGACGATGGA+TGG | + | chr3_3:70708105-70708124 | None:intergenic | 40.0% | |
TAGAAGGGAGACGGTTTATA+AGG | - | chr3_3:70708328-70708347 | Msa0469040:CDS | 40.0% | |
TTTAGAAGTTCAGAAGAGGG+TGG | - | chr3_3:70708512-70708531 | Msa0469040:CDS | 40.0% | |
TTAGAAGTTCAGAAGAGGGT+GGG | - | chr3_3:70708513-70708532 | Msa0469040:CDS | 40.0% | |
!!! | GAGTCGAGCCCTTATTTTTT+TGG | - | chr3_3:70708640-70708659 | Msa0469040:CDS | 40.0% |
TTGAGCATGCTTTAACACCT+TGG | - | chr3_3:70708910-70708929 | Msa0469040:CDS | 40.0% | |
GCTTCTATGAATGCTAACTC+AGG | + | chr3_3:70709048-70709067 | None:intergenic | 40.0% | |
! | GAAGAAATAATTTGGGGCTG+AGG | - | chr3_3:70709091-70709110 | Msa0469040:CDS | 40.0% |
!! | AGAAAAGTGGACTGTTCTTG+AGG | - | chr3_3:70709207-70709226 | Msa0469040:intron | 40.0% |
!! | GAAAAGTGGACTGTTCTTGA+GGG | - | chr3_3:70709208-70709227 | Msa0469040:intron | 40.0% |
!! | AAAAGTGGACTGTTCTTGAG+GGG | - | chr3_3:70709209-70709228 | Msa0469040:intron | 40.0% |
!! | GCTTTGTTTGTGAGTTTGGA+GGG | - | chr3_3:70709348-70709367 | Msa0469040:intron | 40.0% |
!! | GGGGATAGCTTTGGAAAAAA+AGG | - | chr3_3:70709378-70709397 | Msa0469040:intron | 40.0% |
GAAAAAAAGGAAGGAGCAGA+TGG | - | chr3_3:70709391-70709410 | Msa0469040:intron | 40.0% | |
! | TATTGGAGGAGGATTTTGGA+GGG | - | chr3_3:70709492-70709511 | Msa0469040:CDS | 40.0% |
GTGGGAAATATAGGGGAAAT+TGG | + | chr3_3:70709644-70709663 | None:intergenic | 40.0% | |
TTTGGGAGGTGGGAAATATA+GGG | + | chr3_3:70709652-70709671 | None:intergenic | 40.0% | |
TCTGTATATGTGTGGGATAC+CGG | + | chr3_3:70709753-70709772 | None:intergenic | 40.0% | |
GAGATTGAACTCAATAGTGC+AGG | - | chr3_3:70709771-70709790 | Msa0469040:intron | 40.0% | |
GGAAGAGAATTCAGCTCAAA+TGG | - | chr3_3:70709881-70709900 | Msa0469040:CDS | 40.0% | |
GAACTTGAAGCTAAGTTTGG+AGG | + | chr3_3:70709964-70709983 | None:intergenic | 40.0% | |
GCACTCGTTCATATGAGATA+AGG | - | chr3_3:70709995-70710014 | Msa0469040:CDS | 40.0% | |
TGAAGCTAAGTTTGGATGGA+GGG | + | chr3_3:70710036-70710055 | None:intergenic | 40.0% | |
TTGAAGCTAAGTTTGGATGG+AGG | + | chr3_3:70710037-70710056 | None:intergenic | 40.0% | |
CATCCTTATCTCCTATGAAC+GGG | + | chr3_3:70710078-70710097 | None:intergenic | 40.0% | |
GCATCCTTATCTCCTATGAA+CGG | + | chr3_3:70710079-70710098 | None:intergenic | 40.0% | |
TCATAGGAGATAAGGATGCT+AGG | - | chr3_3:70710080-70710099 | Msa0469040:intron | 40.0% | |
! | AAATTTTAGGCAAGCCACCA+AGG | - | chr3_3:70710187-70710206 | Msa0469040:intron | 40.0% |
! | TTTTGCTAGCTGATGTACCT+TGG | + | chr3_3:70710207-70710226 | None:intergenic | 40.0% |
!! | GGATCTTTAAGATGGTTGAG+TGG | + | chr3_3:70710322-70710341 | None:intergenic | 40.0% |
CAACCATCTTAAAGATCCAC+AGG | - | chr3_3:70710324-70710343 | Msa0469040:intron | 40.0% | |
GGATAGAGCAAAATGCAAAC+AGG | + | chr3_3:70710388-70710407 | None:intergenic | 40.0% | |
! | ATGTGATCTACAGGGTTTTG+TGG | - | chr3_3:70710426-70710445 | Msa0469040:CDS | 40.0% |
GAAATGCAATGAGCGATTTG+AGG | - | chr3_3:70710471-70710490 | Msa0469040:CDS | 40.0% | |
! | CTTTGATTGGCTGATGAGTT+TGG | - | chr3_3:70711163-70711182 | Msa0469040:intron | 40.0% |
CTGTTGGAATAAATGCAGTC+AGG | - | chr3_3:70711206-70711225 | Msa0469040:intron | 40.0% | |
! | TACTGAAATTTTCCGGTCCT+TGG | - | chr3_3:70711258-70711277 | Msa0469040:intron | 40.0% |
TATATCTTGCGCATCCAACA+AGG | - | chr3_3:70711318-70711337 | Msa0469040:intron | 40.0% | |
ATATCTTGCGCATCCAACAA+GGG | - | chr3_3:70711319-70711338 | Msa0469040:intron | 40.0% | |
ACTAAGCTGACTAAAAGTCC+TGG | - | chr3_3:70711365-70711384 | Msa0469040:intron | 40.0% | |
TAGGAATCAAACTCAAGACC+AGG | + | chr3_3:70711386-70711405 | None:intergenic | 40.0% | |
TATCAACATAGGACGAAGGA+AGG | + | chr3_3:70711536-70711555 | None:intergenic | 40.0% | |
GTGACTTCTTATATAGGGCA+AGG | + | chr3_3:70711604-70711623 | None:intergenic | 40.0% | |
GAGTTACGGTAATTACCTCT+CGG | + | chr3_3:70711673-70711692 | None:intergenic | 40.0% | |
! | TACCGTAACTCTTTTGTGTG+GGG | - | chr3_3:70711682-70711701 | Msa0469040:intron | 40.0% |
CCCTTCACTGCTAATTAAGA+AGG | - | chr3_3:70711778-70711797 | Msa0469040:intron | 40.0% | |
TGCTAATTAAGAAGGACCGA+GGG | - | chr3_3:70711786-70711805 | Msa0469040:intron | 40.0% | |
TTGACTTCTCCATAAGCCTT+TGG | + | chr3_3:70711836-70711855 | None:intergenic | 40.0% | |
AAATGAGCAGGAAGATGATC+AGG | - | chr3_3:70711949-70711968 | Msa0469040:intron | 40.0% | |
! | AGTTCTGATTACGAAACCAG+TGG | - | chr3_3:70712079-70712098 | Msa0469040:intron | 40.0% |
ATTATCAGCATCATCACCAC+TGG | + | chr3_3:70712098-70712117 | None:intergenic | 40.0% | |
TGATCTAGAAGACAGTGAAG+AGG | - | chr3_3:70712120-70712139 | Msa0469040:intron | 40.0% | |
ATTTCGGAACATGAAGGAGA+TGG | - | chr3_3:70712163-70712182 | Msa0469040:intron | 40.0% | |
GATGGTGATCTGCATATTCT+TGG | - | chr3_3:70712181-70712200 | Msa0469040:intron | 40.0% | |
TCTGCATATTCTTGGAAGTG+TGG | - | chr3_3:70712189-70712208 | Msa0469040:intron | 40.0% | |
!! | TCCATCTTCATTTTCTGGCA+GGG | + | chr3_3:70712341-70712360 | None:intergenic | 40.0% |
!! | TTCCATCTTCATTTTCTGGC+AGG | + | chr3_3:70712342-70712361 | None:intergenic | 40.0% |
! | TGCAGTTCTTGCTTCGTTTT+TGG | + | chr3_3:70712490-70712509 | None:intergenic | 40.0% |
! | ATTCCAAGCTCTGATCAACT+AGG | - | chr3_3:70712549-70712568 | Msa0469040:intron | 40.0% |
AAACCTAGTTGATCAGAGCT+TGG | + | chr3_3:70712555-70712574 | None:intergenic | 40.0% | |
! | TCAACTAGGTTTAAAGCGAG+TGG | - | chr3_3:70712563-70712582 | Msa0469040:intron | 40.0% |
AGAGCTACTTACTTCAAGCA+TGG | + | chr3_3:70712595-70712614 | None:intergenic | 40.0% | |
AAAAGCTTAACAAGGAGGAG+AGG | - | chr3_3:70712730-70712749 | Msa0469040:intron | 40.0% | |
! | TTTTGTATTGAACAGACGGG+TGG | - | chr3_3:70713219-70713238 | Msa0469040:CDS | 40.0% |
AGTTGCAAAGAGAAAGAAGG+TGG | - | chr3_3:70713284-70713303 | Msa0469040:CDS | 40.0% | |
GATTTGATTCTGCATTCCAG+AGG | - | chr3_3:70713567-70713586 | Msa0469040:CDS | 40.0% | |
! | TTTCGGATTTTAGACCGGAG+GGG | + | chr3_3:70707156-70707175 | None:intergenic | 45.0% |
! | CTTTTCGGATTTTAGACCGG+AGG | + | chr3_3:70707158-70707177 | None:intergenic | 45.0% |
!! | TCTTTGATTGAAGTGCTGGG+AGG | + | chr3_3:70707186-70707205 | None:intergenic | 45.0% |
AAGATGAAATGCGACCCTGA+AGG | - | chr3_3:70707202-70707221 | Msa0469040:three_prime_UTR | 45.0% | |
! | ACTGCGGATTAAGAGGAGTT+CGG | + | chr3_3:70707236-70707255 | None:intergenic | 45.0% |
GGGAGGAATTGAATTGACTG+CGG | + | chr3_3:70707252-70707271 | None:intergenic | 45.0% | |
TTGTTGGAAGAGTTCAAGGG+AGG | + | chr3_3:70707269-70707288 | None:intergenic | 45.0% | |
!! | AGTTCATGGCGGATTGTTGT+TGG | + | chr3_3:70707285-70707304 | None:intergenic | 45.0% |
!! | GCAACTCAGCGAGTTTGTTA+GGG | + | chr3_3:70707420-70707439 | None:intergenic | 45.0% |
! | AGCAACTCAGCGAGTTTGTT+AGG | + | chr3_3:70707421-70707440 | None:intergenic | 45.0% |
!!! | GTTCTGAAGTGCACGGTTTT+TGG | + | chr3_3:70707747-70707766 | None:intergenic | 45.0% |
ATAGCAAGAGGATGAAGACC+GGG | - | chr3_3:70707988-70708007 | Msa0469040:intron | 45.0% | |
AAACCTTGACGATGGATGGA+AGG | + | chr3_3:70708101-70708120 | None:intergenic | 45.0% | |
! | TGATGATGAAAGCAGTGACG+AGG | - | chr3_3:70708277-70708296 | Msa0469040:intron | 45.0% |
GAGACGGTTTATAAGGTGAG+AGG | - | chr3_3:70708335-70708354 | Msa0469040:CDS | 45.0% | |
TAGAAGTTCAGAAGAGGGTG+GGG | - | chr3_3:70708514-70708533 | Msa0469040:CDS | 45.0% | |
TTCTTGAGGGGATTGACAGA+GGG | - | chr3_3:70709221-70709240 | Msa0469040:intron | 45.0% | |
!! | GGCTTTGTTTGTGAGTTTGG+AGG | - | chr3_3:70709347-70709366 | Msa0469040:intron | 45.0% |
GTTTGTGAGTTTGGAGGGAA+AGG | - | chr3_3:70709353-70709372 | Msa0469040:intron | 45.0% | |
GAGCAGATGGAAGAAGTTGA+GGG | - | chr3_3:70709404-70709423 | Msa0469040:intron | 45.0% | |
! | TGGAAGAAGTTGAGGGCTTT+TGG | - | chr3_3:70709411-70709430 | Msa0469040:intron | 45.0% |
! | GGAAGAAGTTGAGGGCTTTT+GGG | - | chr3_3:70709412-70709431 | Msa0469040:intron | 45.0% |
! | GAAGAAGTTGAGGGCTTTTG+GGG | - | chr3_3:70709413-70709432 | Msa0469040:intron | 45.0% |
! | AAGAAGTTGAGGGCTTTTGG+GGG | - | chr3_3:70709414-70709433 | Msa0469040:intron | 45.0% |
TTGAGTTCCCCCAAATTAGG+AGG | + | chr3_3:70709466-70709485 | None:intergenic | 45.0% | |
! | GTATTGGAGGAGGATTTTGG+AGG | - | chr3_3:70709491-70709510 | Msa0469040:CDS | 45.0% |
TTGGGAGGTGGGAAATATAG+GGG | + | chr3_3:70709651-70709670 | None:intergenic | 45.0% | |
! | CTTTGGGAGGTGGGAAATAT+AGG | + | chr3_3:70709653-70709672 | None:intergenic | 45.0% |
TTTGGGAGTTCGAACAGAAG+GGG | + | chr3_3:70709680-70709699 | None:intergenic | 45.0% | |
GTTTGGGAGTTCGAACAGAA+GGG | + | chr3_3:70709681-70709700 | None:intergenic | 45.0% | |
TGTTTGGGAGTTCGAACAGA+AGG | + | chr3_3:70709682-70709701 | None:intergenic | 45.0% | |
GAACTCCCAAACAAAGCCTT+GGG | - | chr3_3:70709689-70709708 | Msa0469040:intron | 45.0% | |
AACTCCCAAACAAAGCCTTG+GGG | - | chr3_3:70709690-70709709 | Msa0469040:intron | 45.0% | |
!! | TAGACCCCAAGGCTTTGTTT+GGG | + | chr3_3:70709697-70709716 | None:intergenic | 45.0% |
!! | ATAGACCCCAAGGCTTTGTT+TGG | + | chr3_3:70709698-70709717 | None:intergenic | 45.0% |
AAAGCCTTGGGGTCTATCTT+TGG | - | chr3_3:70709701-70709720 | Msa0469040:intron | 45.0% | |
AAGCCTTGGGGTCTATCTTT+GGG | - | chr3_3:70709702-70709721 | Msa0469040:intron | 45.0% | |
AAACCCAAAGATAGACCCCA+AGG | + | chr3_3:70709708-70709727 | None:intergenic | 45.0% | |
TGAAGCTAAGTTTGGAGGGA+GGG | + | chr3_3:70709959-70709978 | None:intergenic | 45.0% | |
TTGAAGCTAAGTTTGGAGGG+AGG | + | chr3_3:70709960-70709979 | None:intergenic | 45.0% | |
TGAACGAGTGCAAGTGCAAA+AGG | + | chr3_3:70709986-70710005 | None:intergenic | 45.0% | |
TGAACGGGTGCAAGTACAAA+AGG | + | chr3_3:70710063-70710082 | None:intergenic | 45.0% | |
TTGTACTTGCACCCGTTCAT+AGG | - | chr3_3:70710064-70710083 | Msa0469040:CDS | 45.0% | |
! | TGACAGGAGTACGCTTTGAT+TGG | - | chr3_3:70711150-70711169 | Msa0469040:intron | 45.0% |
TGTTCAGTATGCTTGTAGCG+TGG | - | chr3_3:70711444-70711463 | Msa0469040:intron | 45.0% | |
AAGGGAGTTATCCCATTCCA+AGG | + | chr3_3:70711471-70711490 | None:intergenic | 45.0% | |
ATAGGGCAAGGTCTTGAAGT+AGG | + | chr3_3:70711592-70711611 | None:intergenic | 45.0% | |
! | ACCGTAACTCTTTTGTGTGG+GGG | - | chr3_3:70711683-70711702 | Msa0469040:intron | 45.0% |
CTGCTAATTAAGAAGGACCG+AGG | - | chr3_3:70711785-70711804 | Msa0469040:intron | 45.0% | |
TAATTAAGAAGGACCGAGGG+AGG | - | chr3_3:70711789-70711808 | Msa0469040:intron | 45.0% | |
!! | TAAGCCTTTGGTCTTGCCTT+GGG | + | chr3_3:70711824-70711843 | None:intergenic | 45.0% |
!! | ATAAGCCTTTGGTCTTGCCT+TGG | + | chr3_3:70711825-70711844 | None:intergenic | 45.0% |
AAGGCAAGACCAAAGGCTTA+TGG | - | chr3_3:70711824-70711843 | Msa0469040:intron | 45.0% | |
TTGCGGTTCAGAAAATGAGC+AGG | - | chr3_3:70711937-70711956 | Msa0469040:intron | 45.0% | |
CAGCTAGGCAGTGATAATAC+CGG | - | chr3_3:70711998-70712017 | Msa0469040:intron | 45.0% | |
GGCTTCATCATCATCACTTC+CGG | + | chr3_3:70712020-70712039 | None:intergenic | 45.0% | |
GATGAAGCCGAAGATCATGA+TGG | - | chr3_3:70712031-70712050 | Msa0469040:intron | 45.0% | |
!! | TGAAGAGGATGGTGGGATTT+CGG | - | chr3_3:70712147-70712166 | Msa0469040:intron | 45.0% |
TTTCCAATGCAGACTTCCAG+AGG | - | chr3_3:70712365-70712384 | Msa0469040:intron | 45.0% | |
! | CCTTTAGTTCCTTGATCCTC+TGG | + | chr3_3:70712384-70712403 | None:intergenic | 45.0% |
CCAGAGGATCAAGGAACTAA+AGG | - | chr3_3:70712381-70712400 | Msa0469040:CDS | 45.0% | |
! | CTAGGTTTAAAGCGAGTGGA+TGG | - | chr3_3:70712567-70712586 | Msa0469040:intron | 45.0% |
AGCGGCTGTCAAACAGAAAA+AGG | - | chr3_3:70712803-70712822 | Msa0469040:intron | 45.0% | |
GGTCTGGTAAACAACAACGT+GGG | - | chr3_3:70713343-70713362 | Msa0469040:CDS | 45.0% | |
! | AGCTTCTCGTTGATTGCAGT+TGG | + | chr3_3:70713481-70713500 | None:intergenic | 45.0% |
!!! | TTTTTTTTTTTTTAAATATC+AGG | - | chr3_3:70708162-70708181 | Msa0469040:CDS | 5.0% |
!!! | TTTTTTATATTAAATTTTGA+TGG | - | chr3_3:70713515-70713534 | Msa0469040:CDS | 5.0% |
GTTCGGATTCGTAGCCTTCA+GGG | + | chr3_3:70707219-70707238 | None:intergenic | 50.0% | |
AGTTCGGATTCGTAGCCTTC+AGG | + | chr3_3:70707220-70707239 | None:intergenic | 50.0% | |
ATCGGCAAGATCTTTGGCGA+CGG | + | chr3_3:70707341-70707360 | None:intergenic | 50.0% | |
AAAAGGAGGTGAGGTGAGAG+AGG | + | chr3_3:70707375-70707394 | None:intergenic | 50.0% | |
!! | AGAGAGGTGCTGAGGGTAAA+AGG | + | chr3_3:70707392-70707411 | None:intergenic | 50.0% |
!! | GGAATTCAGAGAGGTGCTGA+GGG | + | chr3_3:70707399-70707418 | None:intergenic | 50.0% |
AGCTTCACAAGAGACGGACA+TGG | - | chr3_3:70708038-70708057 | Msa0469040:intron | 50.0% | |
CTTCCTTCCATCCATCGTCA+AGG | - | chr3_3:70708095-70708114 | Msa0469040:intron | 50.0% | |
GTTCTTGAGGGGATTGACAG+AGG | - | chr3_3:70709220-70709239 | Msa0469040:intron | 50.0% | |
TGAGTTTGGAGGGAAAGGCA+GGG | - | chr3_3:70709358-70709377 | Msa0469040:intron | 50.0% | |
GGAGCAGATGGAAGAAGTTG+AGG | - | chr3_3:70709403-70709422 | Msa0469040:intron | 50.0% | |
CGAACTCCCAAACAAAGCCT+TGG | - | chr3_3:70709688-70709707 | Msa0469040:intron | 50.0% | |
GCACCCGTTCATAGGAGATA+AGG | - | chr3_3:70710072-70710091 | Msa0469040:intron | 50.0% | |
TGCTAGCTGATGTACCTTGG+TGG | + | chr3_3:70710204-70710223 | None:intergenic | 50.0% | |
! | AAGAGCGCGGATCATCTGAA+AGG | - | chr3_3:70710275-70710294 | Msa0469040:intron | 50.0% |
! | TAACATCTCGTTGATGGGGC+TGG | + | chr3_3:70710808-70710827 | None:intergenic | 50.0% |
TTTGATTGCAGCAGCGGTTC+AGG | - | chr3_3:70710832-70710851 | Msa0469040:intron | 50.0% | |
GGTTCAGGCTTGCCATGATA+TGG | - | chr3_3:70710847-70710866 | Msa0469040:intron | 50.0% | |
AACAAGGGCTCAACTGCATC+AGG | + | chr3_3:70711031-70711050 | None:intergenic | 50.0% | |
TACTTACCAGTGGCATACGC+AGG | + | chr3_3:70711240-70711259 | None:intergenic | 50.0% | |
TATGCTTGTAGCGTGGTCCT+TGG | - | chr3_3:70711451-70711470 | Msa0469040:intron | 50.0% | |
TTGTAGCGTGGTCCTTGGAA+TGG | - | chr3_3:70711456-70711475 | Msa0469040:intron | 50.0% | |
TGTAGCGTGGTCCTTGGAAT+GGG | - | chr3_3:70711457-70711476 | Msa0469040:intron | 50.0% | |
CCCCCCACACAAAAGAGTTA+CGG | + | chr3_3:70711687-70711706 | None:intergenic | 50.0% | |
! | CCGTAACTCTTTTGTGTGGG+GGG | - | chr3_3:70711684-70711703 | Msa0469040:intron | 50.0% |
!! | AAGCCTTTGGTCTTGCCTTG+GGG | + | chr3_3:70711823-70711842 | None:intergenic | 50.0% |
ATCTGCAACAACTCAGCACC+AGG | + | chr3_3:70711875-70711894 | None:intergenic | 50.0% | |
TCTGACGATGACAACCAGCT+AGG | - | chr3_3:70711983-70712002 | Msa0469040:intron | 50.0% | |
CGGTATTATCACTGCCTAGC+TGG | + | chr3_3:70712000-70712019 | None:intergenic | 50.0% | |
CAGTGAAGAGGCTGATGAAG+AGG | - | chr3_3:70712132-70712151 | Msa0469040:intron | 50.0% | |
GAAGAGGCTGATGAAGAGGA+TGG | - | chr3_3:70712136-70712155 | Msa0469040:intron | 50.0% | |
AGGCTGATGAAGAGGATGGT+GGG | - | chr3_3:70712140-70712159 | Msa0469040:intron | 50.0% | |
GGTGGGATTTCGGAACATGA+AGG | - | chr3_3:70712157-70712176 | Msa0469040:intron | 50.0% | |
!! | CAGCTGCTGATTCAAGTCTC+CGG | - | chr3_3:70712278-70712297 | Msa0469040:intron | 50.0% |
!! | AGCTGCTGATTCAAGTCTCC+GGG | - | chr3_3:70712279-70712298 | Msa0469040:intron | 50.0% |
!! | TCTCCGGGCTTTGAAGAAGT+TGG | - | chr3_3:70712294-70712313 | Msa0469040:intron | 50.0% |
CTGCCAACTTCTTCAAAGCC+CGG | + | chr3_3:70712300-70712319 | None:intergenic | 50.0% | |
!! | GGGCTTTGAAGAAGTTGGCA+GGG | - | chr3_3:70712299-70712318 | Msa0469040:intron | 50.0% |
GAAGTTGGCAGGGACAACAA+TGG | - | chr3_3:70712309-70712328 | Msa0469040:intron | 50.0% | |
GCCCTGCCAGAAAATGAAGA+TGG | - | chr3_3:70712337-70712356 | Msa0469040:intron | 50.0% | |
! | GATCCTCTGGAAGTCTGCAT+TGG | + | chr3_3:70712371-70712390 | None:intergenic | 50.0% |
TGCAGACTTCCAGAGGATCA+AGG | - | chr3_3:70712372-70712391 | Msa0469040:CDS | 50.0% | |
AGAACTGCATTAGCGCAGCA+CGG | - | chr3_3:70712501-70712520 | Msa0469040:intron | 50.0% | |
GCTTAACAAGGAGGAGAGGT+TGG | - | chr3_3:70712734-70712753 | Msa0469040:intron | 50.0% | |
AGGTTGGCAATGGTTAGAGC+AGG | - | chr3_3:70712750-70712769 | Msa0469040:intron | 50.0% | |
GGTTGGCAATGGTTAGAGCA+GGG | - | chr3_3:70712751-70712770 | Msa0469040:intron | 50.0% | |
AGGATAAAACAGCAGCGGTC+TGG | - | chr3_3:70713327-70713346 | Msa0469040:CDS | 50.0% | |
CGGTCTGGTAAACAACAACG+TGG | - | chr3_3:70713342-70713361 | Msa0469040:CDS | 50.0% | |
CTGGTAAACAACAACGTGGG+AGG | - | chr3_3:70713346-70713365 | Msa0469040:CDS | 50.0% | |
! | TGGGAGGAAAGCGTGGAAAT+AGG | - | chr3_3:70713362-70713381 | Msa0469040:CDS | 50.0% |
! | GGGAGGAAAGCGTGGAAATA+GGG | - | chr3_3:70713363-70713382 | Msa0469040:CDS | 50.0% |
!! | CTGGTGGTGGCTACGTTTCA+TGG | + | chr3_3:70707107-70707126 | None:intergenic | 55.0% |
! | TGCTGGGAGGCTGAGCTTTT+CGG | + | chr3_3:70707173-70707192 | None:intergenic | 55.0% |
GTCGTTGGAGATGCCGGAAA+TGG | + | chr3_3:70707314-70707333 | None:intergenic | 55.0% | |
CAAGATCTTTGGCGACGGTG+GGG | + | chr3_3:70707336-70707355 | None:intergenic | 55.0% | |
GCAAGATCTTTGGCGACGGT+GGG | + | chr3_3:70707337-70707356 | None:intergenic | 55.0% | |
GCTGAGGGTAAAAGGAGGTG+AGG | + | chr3_3:70707384-70707403 | None:intergenic | 55.0% | |
!! | GAGGTGCTGAGGGTAAAAGG+AGG | + | chr3_3:70707389-70707408 | None:intergenic | 55.0% |
!! | GGGAATTCAGAGAGGTGCTG+AGG | + | chr3_3:70707400-70707419 | None:intergenic | 55.0% |
GCTGCTCGAACACTTCCTTC+TGG | - | chr3_3:70707448-70707467 | Msa0469040:CDS | 55.0% | |
AGGATGAAGACCGGGCAAAG+AGG | - | chr3_3:70707996-70708015 | Msa0469040:intron | 55.0% | |
GGATGAAGACCGGGCAAAGA+GGG | - | chr3_3:70707997-70708016 | Msa0469040:intron | 55.0% | |
AGTTCAGAAGAGGGTGGGGT+TGG | - | chr3_3:70708518-70708537 | Msa0469040:CDS | 55.0% | |
GTTCAGAAGAGGGTGGGGTT+GGG | - | chr3_3:70708519-70708538 | Msa0469040:CDS | 55.0% | |
! | GCTGAGGGCATGTTAGTTGG+AGG | - | chr3_3:70709107-70709126 | Msa0469040:CDS | 55.0% |
GTGAGTTTGGAGGGAAAGGC+AGG | - | chr3_3:70709357-70709376 | Msa0469040:intron | 55.0% | |
GAGTTTGGAGGGAAAGGCAG+GGG | - | chr3_3:70709359-70709378 | Msa0469040:intron | 55.0% | |
GGAAAGGCAGGGGATAGCTT+TGG | - | chr3_3:70709369-70709388 | Msa0469040:intron | 55.0% | |
GAACAGAAGGGGAGGGCTTT+GGG | + | chr3_3:70709669-70709688 | None:intergenic | 55.0% | |
GGAGTTCGAACAGAAGGGGA+GGG | + | chr3_3:70709676-70709695 | None:intergenic | 55.0% | |
AAGGGCTCAACTGCATCAGG+AGG | + | chr3_3:70711028-70711047 | None:intergenic | 55.0% | |
GATATGCCTGCGTATGCCAC+TGG | - | chr3_3:70711231-70711250 | Msa0469040:intron | 55.0% | |
CTTGCGCATCCAACAAGGGT+TGG | - | chr3_3:70711323-70711342 | Msa0469040:intron | 55.0% | |
TGACCCCAAGGCAAGACCAA+AGG | - | chr3_3:70711817-70711836 | Msa0469040:intron | 55.0% | |
AATGTTGCGGCTGACGTTCC+TGG | - | chr3_3:70711854-70711873 | Msa0469040:intron | 55.0% | |
GAGGCTGATGAAGAGGATGG+TGG | - | chr3_3:70712139-70712158 | Msa0469040:intron | 55.0% | |
!! | CGGGCTTTGAAGAAGTTGGC+AGG | - | chr3_3:70712298-70712317 | Msa0469040:intron | 55.0% |
GAACTGCATTAGCGCAGCAC+GGG | - | chr3_3:70712502-70712521 | Msa0469040:intron | 55.0% | |
CAAGGAGGAGAGGTTGGCAA+TGG | - | chr3_3:70712740-70712759 | Msa0469040:intron | 55.0% | |
TGGCAATGGTTAGAGCAGGG+AGG | - | chr3_3:70712754-70712773 | Msa0469040:intron | 55.0% | |
GGCAATGGTTAGAGCAGGGA+GGG | - | chr3_3:70712755-70712774 | Msa0469040:intron | 55.0% | |
AATGGTTAGAGCAGGGAGGG+AGG | - | chr3_3:70712758-70712777 | Msa0469040:intron | 55.0% | |
AGGACAGTACCATGCTCGAG+CGG | - | chr3_3:70712785-70712804 | Msa0469040:intron | 55.0% | |
AACAACGTGGGAGGAAAGCG+TGG | - | chr3_3:70713355-70713374 | Msa0469040:CDS | 55.0% | |
!! | ACGGAGGCATTTCTCCCCTC+CGG | - | chr3_3:70707139-70707158 | Msa0469040:three_prime_UTR | 60.0% |
GGCAAGATCTTTGGCGACGG+TGG | + | chr3_3:70707338-70707357 | None:intergenic | 60.0% | |
TCACAAGCGCCCTCTTTGCC+CGG | + | chr3_3:70708009-70708028 | None:intergenic | 60.0% | |
! | GGGGCTGAGGGCATGTTAGT+TGG | - | chr3_3:70709104-70709123 | Msa0469040:CDS | 60.0% |
CGAACAGAAGGGGAGGGCTT+TGG | + | chr3_3:70709670-70709689 | None:intergenic | 60.0% | |
GGGAGTTCGAACAGAAGGGG+AGG | + | chr3_3:70709677-70709696 | None:intergenic | 60.0% | |
TGGAGGGAGGGAGTAGAGCA+GGG | + | chr3_3:70709947-70709966 | None:intergenic | 60.0% | |
TTGGAGGGAGGGAGTAGAGC+AGG | + | chr3_3:70709948-70709967 | None:intergenic | 60.0% | |
GGTCTTGCCTTGGGGTCAGT+AGG | + | chr3_3:70711815-70711834 | None:intergenic | 60.0% | |
AGAGCAGGGAGGGAGGAAAG+AGG | - | chr3_3:70712765-70712784 | Msa0469040:intron | 60.0% | |
GTTTGACAGCCGCTCGAGCA+TGG | + | chr3_3:70712797-70712816 | None:intergenic | 60.0% | |
GAAATGCCTCCGTCGCGGCA+TGG | + | chr3_3:70707132-70707151 | None:intergenic | 65.0% | |
GGGGAGAAATGCCTCCGTCG+CGG | + | chr3_3:70707137-70707156 | None:intergenic | 65.0% | |
GGTGGGGTCGTTGGAGATGC+CGG | + | chr3_3:70707320-70707339 | None:intergenic | 65.0% | |
TTTGGCGACGGTGGGGTCGT+TGG | + | chr3_3:70707329-70707348 | None:intergenic | 65.0% | |
!! | AGGGGAGGGCTTTGGGAGGT+GGG | + | chr3_3:70709662-70709681 | None:intergenic | 65.0% |
!! | AAGGGGAGGGCTTTGGGAGG+TGG | + | chr3_3:70709663-70709682 | None:intergenic | 65.0% |
!! | CAGAAGGGGAGGGCTTTGGG+AGG | + | chr3_3:70709666-70709685 | None:intergenic | 65.0% |
TGGGGTCAGTAGGCCTCCCT+CGG | + | chr3_3:70711805-70711824 | None:intergenic | 65.0% | |
AGGGAGGCCTACTGACCCCA+AGG | - | chr3_3:70711805-70711824 | Msa0469040:intron | 65.0% | |
!! | TCGCGGCATGGCTCTGGTGG+TGG | + | chr3_3:70707120-70707139 | None:intergenic | 70.0% |
CCACCAGAGCCATGCCGCGA+CGG | - | chr3_3:70707120-70707139 | Msa0469040:three_prime_UTR | 70.0% | |
!! | CCGTCGCGGCATGGCTCTGG+TGG | + | chr3_3:70707123-70707142 | None:intergenic | 75.0% |
CCTCCGTCGCGGCATGGCTC+TGG | + | chr3_3:70707126-70707145 | None:intergenic | 75.0% | |
CCAGAGCCATGCCGCGACGG+AGG | - | chr3_3:70707123-70707142 | Msa0469040:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 70707097 | 70713622 | 70707097 | ID=Msa0469040;Name=Msa0469040 |
chr3_3 | mRNA | 70707097 | 70713622 | 70707097 | ID=Msa0469040-mRNA-1;Parent=Msa0469040;Name=Msa0469040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=9|1|1|1|1|1|15|239|815 |
chr3_3 | exon | 70707097 | 70707485 | 70707097 | ID=Msa0469040-mRNA-1:exon:17300;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70707895 | 70708002 | 70707895 | ID=Msa0469040-mRNA-1:exon:17299;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70708117 | 70708233 | 70708117 | ID=Msa0469040-mRNA-1:exon:17298;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70708317 | 70708946 | 70708317 | ID=Msa0469040-mRNA-1:exon:17297;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70709043 | 70709144 | 70709043 | ID=Msa0469040-mRNA-1:exon:17296;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70709467 | 70709520 | 70709467 | ID=Msa0469040-mRNA-1:exon:17295;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70709623 | 70709697 | 70709623 | ID=Msa0469040-mRNA-1:exon:17294;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70709851 | 70709910 | 70709851 | ID=Msa0469040-mRNA-1:exon:17293;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70709995 | 70710090 | 70709995 | ID=Msa0469040-mRNA-1:exon:17292;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70710227 | 70710280 | 70710227 | ID=Msa0469040-mRNA-1:exon:17291;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70710374 | 70710523 | 70710374 | ID=Msa0469040-mRNA-1:exon:17290;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70712370 | 70712505 | 70712370 | ID=Msa0469040-mRNA-1:exon:17289;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70712603 | 70712727 | 70712603 | ID=Msa0469040-mRNA-1:exon:17288;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70712932 | 70713108 | 70712932 | ID=Msa0469040-mRNA-1:exon:17287;Parent=Msa0469040-mRNA-1 |
chr3_3 | exon | 70713200 | 70713622 | 70713200 | ID=Msa0469040-mRNA-1:exon:17286;Parent=Msa0469040-mRNA-1 |
chr3_3 | five_prime_UTR | 70713614 | 70713622 | 70713614 | ID=Msa0469040-mRNA-1:five_prime_utr;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70713200 | 70713613 | 70713200 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70712932 | 70713108 | 70712932 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70712603 | 70712727 | 70712603 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70712370 | 70712505 | 70712370 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70710374 | 70710523 | 70710374 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70710227 | 70710280 | 70710227 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70709995 | 70710090 | 70709995 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70709851 | 70709910 | 70709851 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70709623 | 70709697 | 70709623 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70709467 | 70709520 | 70709467 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70709043 | 70709144 | 70709043 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70708317 | 70708946 | 70708317 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70708117 | 70708233 | 70708117 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70707895 | 70708002 | 70707895 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | CDS | 70707336 | 70707485 | 70707336 | ID=Msa0469040-mRNA-1:cds;Parent=Msa0469040-mRNA-1 |
chr3_3 | three_prime_UTR | 70707097 | 70707335 | 70707097 | ID=Msa0469040-mRNA-1:three_prime_utr;Parent=Msa0469040-mRNA-1 |
Gene Sequence |
Protein sequence |