Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793380 | XP_024630146.1 | 98.611 | 144 | 2 | 0 | 21 | 164 | 1 | 144 | 1.37e-98 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793380 | B7FGY4 | 98.611 | 144 | 2 | 0 | 21 | 164 | 1 | 144 | 6.56e-99 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0793380 | 0.828045 | 1.118279e-54 | -8.615850e-47 |
| Msa0006040 | Msa0793380 | 0.821196 | 4.592324e-53 | -8.615850e-47 |
| Msa0007440 | Msa0793380 | 0.814495 | 1.496356e-51 | -8.615850e-47 |
| Msa0015460 | Msa0793380 | 0.804292 | 2.316406e-49 | -8.615850e-47 |
| Msa0018070 | Msa0793380 | 0.812396 | 4.330915e-51 | -8.615850e-47 |
| Msa0023000 | Msa0793380 | 0.829120 | 6.147757e-55 | -8.615850e-47 |
| Msa0028660 | Msa0793380 | 0.823281 | 1.507100e-53 | -8.615850e-47 |
| Msa0037880 | Msa0793380 | 0.821824 | 3.286880e-53 | -8.615850e-47 |
| Msa0051860 | Msa0793380 | 0.828647 | 8.003078e-55 | -8.615850e-47 |
| Msa0051930 | Msa0793380 | 0.812860 | 3.428103e-51 | -8.615850e-47 |
| Msa0054750 | Msa0793380 | 0.836653 | 8.249430e-57 | -8.615850e-47 |
| Msa0058300 | Msa0793380 | 0.810486 | 1.125379e-50 | -8.615850e-47 |
| Msa0065950 | Msa0793380 | 0.803197 | 3.911146e-49 | -8.615850e-47 |
| Msa0076320 | Msa0793380 | 0.827361 | 1.632769e-54 | -8.615850e-47 |
| Msa0084940 | Msa0793380 | 0.809343 | 1.982847e-50 | -8.615850e-47 |
| Msa0086420 | Msa0793380 | 0.817146 | 3.836672e-52 | -8.615850e-47 |
| Msa0089820 | Msa0793380 | 0.823000 | 1.753170e-53 | -8.615850e-47 |
| Msa0091570 | Msa0793380 | 0.814694 | 1.352155e-51 | -8.615850e-47 |
| Msa0092990 | Msa0793380 | 0.807919 | 3.995062e-50 | -8.615850e-47 |
| Msa0096030 | Msa0793380 | 0.800038 | 1.738003e-48 | -8.615850e-47 |
| Msa0096980 | Msa0793380 | 0.830641 | 2.619338e-55 | -8.615850e-47 |
| Msa0105700 | Msa0793380 | 0.810506 | 1.114096e-50 | -8.615850e-47 |
| Msa0109590 | Msa0793380 | 0.810755 | 9.842991e-51 | -8.615850e-47 |
| Msa0115270 | Msa0793380 | 0.827157 | 1.826466e-54 | -8.615850e-47 |
| Msa0115390 | Msa0793380 | 0.832051 | 1.178529e-55 | -8.615850e-47 |
| Msa0118540 | Msa0793380 | 0.832526 | 8.990663e-56 | -8.615850e-47 |
| Msa0608160 | Msa0793380 | 0.826589 | 2.497169e-54 | -8.615850e-47 |
| Msa0608710 | Msa0793380 | 0.817866 | 2.639998e-52 | -8.615850e-47 |
| Msa0610130 | Msa0793380 | 0.800149 | 1.650175e-48 | -8.615850e-47 |
| Msa0610430 | Msa0793380 | 0.811341 | 7.349706e-51 | -8.615850e-47 |
| Msa0631350 | Msa0793380 | 0.801926 | 7.149321e-49 | -8.615850e-47 |
| Msa0643320 | Msa0793380 | 0.826140 | 3.194962e-54 | -8.615850e-47 |
| Msa0648080 | Msa0793380 | 0.826512 | 2.605377e-54 | -8.615850e-47 |
| Msa0649350 | Msa0793380 | 0.804946 | 1.692338e-49 | -8.615850e-47 |
| Msa0661210 | Msa0793380 | 0.814766 | 1.303274e-51 | -8.615850e-47 |
| Msa0683140 | Msa0793380 | 0.836078 | 1.155212e-56 | -8.615850e-47 |
| Msa0683600 | Msa0793380 | 0.836102 | 1.139076e-56 | -8.615850e-47 |
| Msa0686150 | Msa0793380 | 0.844284 | 8.315352e-59 | -8.615850e-47 |
| Msa0689780 | Msa0793380 | 0.807614 | 4.638036e-50 | -8.615850e-47 |
| Msa0703910 | Msa0793380 | 0.800717 | 1.264164e-48 | -8.615850e-47 |
| Msa0723110 | Msa0793380 | 0.807942 | 3.950905e-50 | -8.615850e-47 |
| Msa0771720 | Msa0793380 | 0.808587 | 2.878372e-50 | -8.615850e-47 |
| Msa0784860 | Msa0793380 | 0.826939 | 2.060107e-54 | -8.615850e-47 |
| Msa0793380 | Msa0820850 | 0.831205 | 1.904390e-55 | -8.615850e-47 |
| Msa0793380 | Msa0849030 | 0.831004 | 2.133737e-55 | -8.615850e-47 |
| Msa0793380 | Msa0854320 | 0.803645 | 3.158387e-49 | -8.615850e-47 |
| Msa0793380 | Msa0858180 | 0.801378 | 9.263132e-49 | -8.615850e-47 |
| Msa0793380 | Msa0860900 | -0.812612 | 3.883709e-51 | -8.615850e-47 |
| Msa0793380 | Msa0861130 | 0.827232 | 1.752902e-54 | -8.615850e-47 |
| Msa0793380 | Msa0861470 | 0.800408 | 1.461550e-48 | -8.615850e-47 |
| Msa0793380 | Msa0861570 | 0.814543 | 1.460118e-51 | -8.615850e-47 |
| Msa0793380 | Msa0869120 | 0.808722 | 2.693229e-50 | -8.615850e-47 |
| Msa0793380 | Msa0870150 | 0.818180 | 2.241905e-52 | -8.615850e-47 |
| Msa0793380 | Msa0876360 | 0.807682 | 4.485745e-50 | -8.615850e-47 |
| Msa0793380 | Msa0876580 | 0.835023 | 2.135799e-56 | -8.615850e-47 |
| Msa0793380 | Msa0887250 | 0.802603 | 5.188425e-49 | -8.615850e-47 |
| Msa0793380 | Msa0888260 | 0.821937 | 3.095935e-53 | -8.615850e-47 |
| Msa0793380 | Msa0927260 | 0.810554 | 1.088105e-50 | -8.615850e-47 |
| Msa0793380 | Msa0933380 | 0.801406 | 9.139732e-49 | -8.615850e-47 |
| Msa0793380 | Msa0935850 | 0.808612 | 2.843652e-50 | -8.615850e-47 |
| Msa0793380 | Msa0937330 | 0.809015 | 2.331899e-50 | -8.615850e-47 |
| Msa0793380 | Msa0942550 | -0.826081 | 3.298508e-54 | -8.615850e-47 |
| Msa0793380 | Msa0942560 | -0.806107 | 9.659537e-50 | -8.615850e-47 |
| Msa0793380 | Msa0947760 | 0.824861 | 6.415788e-54 | -8.615850e-47 |
| Msa0793380 | Msa0958920 | 0.815850 | 7.482554e-52 | -8.615850e-47 |
| Msa0793380 | Msa0962840 | 0.803900 | 2.795590e-49 | -8.615850e-47 |
| Msa0793380 | Msa0969370 | 0.823692 | 1.208194e-53 | -8.615850e-47 |
| Msa0793380 | Msa0971020 | 0.816371 | 5.725723e-52 | -8.615850e-47 |
| Msa0793380 | Msa0974630 | 0.806377 | 8.473969e-50 | -8.615850e-47 |
| Msa0793380 | Msa0978700 | 0.806554 | 7.775540e-50 | -8.615850e-47 |
| Msa0793380 | Msa0982270 | 0.829595 | 4.714073e-55 | -8.615850e-47 |
| Msa0793380 | Msa0987370 | 0.812060 | 5.126379e-51 | -8.615850e-47 |
| Msa0793380 | Msa0993240 | 0.815210 | 1.038950e-51 | -8.615850e-47 |
| Msa0793380 | Msa0994370 | 0.854599 | 1.105487e-61 | -8.615850e-47 |
| Msa0793380 | Msa0996170 | 0.814130 | 1.801732e-51 | -8.615850e-47 |
| Msa0793380 | Msa0999050 | -0.800953 | 1.131565e-48 | -8.615850e-47 |
| Msa0793380 | Msa1006710 | 0.801075 | 1.068151e-48 | -8.615850e-47 |
| Msa0793380 | Msa1012660 | 0.819977 | 8.748847e-53 | -8.615850e-47 |
| Msa0793380 | Msa1012830 | 0.841798 | 3.818806e-58 | -8.615850e-47 |
| Msa0793380 | Msa1023180 | 0.807849 | 4.133671e-50 | -8.615850e-47 |
| Msa0793380 | Msa1029050 | 0.810290 | 1.240851e-50 | -8.615850e-47 |
| Msa0793380 | Msa1029080 | -0.831289 | 1.816676e-55 | -8.615850e-47 |
| Msa0793380 | Msa1037420 | 0.848315 | 6.628610e-60 | -8.615850e-47 |
| Msa0793380 | Msa1039880 | 0.819095 | 1.390503e-52 | -8.615850e-47 |
| Msa0793380 | Msa1043050 | 0.810871 | 9.292198e-51 | -8.615850e-47 |
| Msa0793380 | Msa1054150 | -0.818997 | 1.463360e-52 | -8.615850e-47 |
| Msa0793380 | Msa1063510 | 0.807267 | 5.494121e-50 | -8.615850e-47 |
| Msa0793380 | Msa1071320 | 0.814028 | 1.897846e-51 | -8.615850e-47 |
| Msa0793380 | Msa1081790 | -0.816575 | 5.153818e-52 | -8.615850e-47 |
| Msa0793380 | Msa1091100 | 0.801563 | 8.487990e-49 | -8.615850e-47 |
| Msa0793380 | Msa1094430 | 0.817922 | 2.564254e-52 | -8.615850e-47 |
| Msa0793380 | Msa1107190 | 0.801586 | 8.394713e-49 | -8.615850e-47 |
| Msa0793380 | Msa1123810 | 0.824919 | 6.218393e-54 | -8.615850e-47 |
| Msa0793380 | Msa1133230 | 0.823493 | 1.344816e-53 | -8.615850e-47 |
| Msa0793380 | Msa1133250 | 0.817541 | 3.126234e-52 | -8.615850e-47 |
| Msa0793380 | Msa1140230 | 0.811917 | 5.507199e-51 | -8.615850e-47 |
| Msa0793380 | Msa1143930 | -0.822418 | 2.394705e-53 | -8.615850e-47 |
| Msa0793380 | Msa1144040 | 0.805038 | 1.618867e-49 | -8.615850e-47 |
| Msa0793380 | Msa1150710 | 0.816437 | 5.534008e-52 | -8.615850e-47 |
| Msa0793380 | Msa1156170 | -0.824492 | 7.838868e-54 | -8.615850e-47 |
| Msa0793380 | Msa1166090 | -0.820183 | 7.849298e-53 | -8.615850e-47 |
| Msa0793380 | Msa1170690 | 0.801112 | 1.049694e-48 | -8.615850e-47 |
| Msa0793380 | Msa1174040 | 0.813263 | 2.796405e-51 | -8.615850e-47 |
| Msa0793380 | Msa1181250 | 0.816406 | 5.621185e-52 | -8.615850e-47 |
| Msa0793380 | Msa1181330 | 0.813374 | 2.644295e-51 | -8.615850e-47 |
| Msa0793380 | Msa1206270 | 0.816318 | 5.884043e-52 | -8.615850e-47 |
| Msa0793380 | Msa1206290 | 0.807302 | 5.400907e-50 | -8.615850e-47 |
| Msa0793380 | Msa1207470 | -0.820009 | 8.601032e-53 | -8.615850e-47 |
| Msa0793380 | Msa1208380 | 0.806513 | 7.930456e-50 | -8.615850e-47 |
| Msa0793380 | Msa1210020 | 0.801141 | 1.035601e-48 | -8.615850e-47 |
| Msa0793380 | Msa1211140 | -0.833734 | 4.498596e-56 | -8.615850e-47 |
| Msa0793380 | Msa1217430 | -0.842328 | 2.766121e-58 | -8.615850e-47 |
| Msa0793380 | Msa1217650 | -0.810248 | 1.266873e-50 | -8.615850e-47 |
| Msa0793380 | Msa1224810 | 0.813031 | 3.143769e-51 | -8.615850e-47 |
| Msa0793380 | Msa1231840 | 0.811900 | 5.553649e-51 | -8.615850e-47 |
| Msa0793380 | Msa1254730 | 0.800809 | 1.211053e-48 | -8.615850e-47 |
| Msa0793380 | Msa1259590 | -0.835683 | 1.454895e-56 | -8.615850e-47 |
| Msa0793380 | Msa1270660 | 0.813204 | 2.881243e-51 | -8.615850e-47 |
| Msa0793380 | Msa1274560 | 0.803730 | 3.032491e-49 | -8.615850e-47 |
| Msa0793380 | Msa1275360 | 0.802826 | 4.665319e-49 | -8.615850e-47 |
| Msa0793380 | Msa1276340 | 0.802396 | 5.724073e-49 | -8.615850e-47 |
| Msa0793380 | Msa1276440 | 0.800040 | 1.736362e-48 | -8.615850e-47 |
| Msa0793380 | Msa1280320 | 0.807867 | 4.098444e-50 | -8.615850e-47 |
| Msa0793380 | Msa1280340 | 0.806946 | 6.424883e-50 | -8.615850e-47 |
| Msa0793380 | Msa1294820 | 0.800670 | 1.292512e-48 | -8.615850e-47 |
| Msa0793380 | Msa1295330 | 0.810528 | 1.102371e-50 | -8.615850e-47 |
| Msa0793380 | Msa1298510 | 0.800134 | 1.662120e-48 | -8.615850e-47 |
| Msa0793380 | Msa1299290 | -0.833008 | 6.823132e-56 | -8.615850e-47 |
| Msa0793380 | Msa1302190 | -0.827506 | 1.506817e-54 | -8.615850e-47 |
| Msa0793380 | Msa1307740 | 0.820001 | 8.639059e-53 | -8.615850e-47 |
| Msa0793380 | Msa1322190 | 0.810275 | 1.249998e-50 | -8.615850e-47 |
| Msa0793380 | Msa1332040 | -0.826159 | 3.161897e-54 | -8.615850e-47 |
| Msa0793380 | Msa1348600 | 0.816368 | 5.732496e-52 | -8.615850e-47 |
| Msa0793380 | Msa1355890 | 0.825942 | 3.560200e-54 | -8.615850e-47 |
| Msa0793380 | Msa1359630 | 0.818982 | 1.475050e-52 | -8.615850e-47 |
| Msa0793380 | Msa1362880 | 0.824392 | 8.274603e-54 | -8.615850e-47 |
| Msa0793380 | Msa1371090 | 0.800577 | 1.350493e-48 | -8.615850e-47 |
| Msa0793380 | Msa1385770 | 0.808539 | 2.946389e-50 | -8.615850e-47 |
| Msa0793380 | Msa1388860 | 0.816209 | 6.223405e-52 | -8.615850e-47 |
| Msa0793380 | Msa1396400 | -0.816064 | 6.703229e-52 | -8.615850e-47 |
| Msa0793380 | Msa1398090 | 0.803180 | 3.943139e-49 | -8.615850e-47 |
| Msa0793380 | Msa1403340 | 0.844677 | 6.520446e-59 | -8.615850e-47 |
| Msa0793380 | Msa1409240 | 0.809788 | 1.591233e-50 | -8.615850e-47 |
| Msa0793380 | Msa1419000 | 0.818416 | 1.982839e-52 | -8.615850e-47 |
| Msa0793380 | Msa1420270 | 0.814642 | 1.388394e-51 | -8.615850e-47 |
| Msa0793380 | Msa1422810 | 0.808518 | 2.977298e-50 | -8.615850e-47 |
| Msa0793380 | Msa1434140 | 0.807507 | 4.886116e-50 | -8.615850e-47 |
| Msa0793380 | Msa1444740 | 0.834175 | 3.489636e-56 | -8.615850e-47 |
| Msa0793380 | Msa1448620 | 0.825353 | 4.909218e-54 | -8.615850e-47 |
| Msa0793380 | Msa1459760 | -0.803473 | 3.428669e-49 | -8.615850e-47 |
| Msa0793380 | Msa1460320 | -0.803263 | 3.790298e-49 | -8.615850e-47 |
| Msa0793380 | Msa1465960 | 0.822477 | 2.319802e-53 | -8.615850e-47 |
| Msa0129190 | Msa0793380 | -0.810366 | 1.194884e-50 | -8.615850e-47 |
| Msa0130520 | Msa0793380 | 0.837043 | 6.559798e-57 | -8.615850e-47 |
| Msa0145010 | Msa0793380 | 0.826442 | 2.706400e-54 | -8.615850e-47 |
| Msa0145730 | Msa0793380 | 0.803961 | 2.715627e-49 | -8.615850e-47 |
| Msa0152170 | Msa0793380 | 0.816139 | 6.450505e-52 | -8.615850e-47 |
| Msa0162130 | Msa0793380 | 0.847456 | 1.143454e-59 | -8.615850e-47 |
| Msa0172780 | Msa0793380 | 0.818572 | 1.827423e-52 | -8.615850e-47 |
| Msa0177300 | Msa0793380 | 0.806055 | 9.904420e-50 | -8.615850e-47 |
| Msa0177340 | Msa0793380 | 0.807558 | 4.766650e-50 | -8.615850e-47 |
| Msa0178860 | Msa0793380 | -0.802013 | 6.863030e-49 | -8.615850e-47 |
| Msa0180510 | Msa0793380 | -0.802466 | 5.536128e-49 | -8.615850e-47 |
| Msa0187230 | Msa0793380 | 0.810092 | 1.368715e-50 | -8.615850e-47 |
| Msa0189520 | Msa0793380 | 0.846967 | 1.557286e-59 | -8.615850e-47 |
| Msa0190120 | Msa0793380 | 0.816451 | 5.494416e-52 | -8.615850e-47 |
| Msa0194480 | Msa0793380 | 0.801676 | 8.048036e-49 | -8.615850e-47 |
| Msa0217680 | Msa0793380 | 0.801158 | 1.027524e-48 | -8.615850e-47 |
| Msa0372340 | Msa0793380 | 0.802970 | 4.356506e-49 | -8.615850e-47 |
| Msa0385490 | Msa0793380 | 0.805234 | 1.472757e-49 | -8.615850e-47 |
| Msa0389810 | Msa0793380 | 0.826892 | 2.113916e-54 | -8.615850e-47 |
| Msa0394340 | Msa0793380 | 0.853273 | 2.665038e-61 | -8.615850e-47 |
| Msa0397540 | Msa0793380 | 0.812029 | 5.206771e-51 | -8.615850e-47 |
| Msa0401560 | Msa0793380 | 0.803913 | 2.778418e-49 | -8.615850e-47 |
| Msa0404030 | Msa0793380 | 0.806353 | 8.573367e-50 | -8.615850e-47 |
| Msa0412840 | Msa0793380 | 0.852366 | 4.839204e-61 | -8.615850e-47 |
| Msa0433530 | Msa0793380 | 0.811206 | 7.859693e-51 | -8.615850e-47 |
| Msa0434180 | Msa0793380 | 0.800189 | 1.619410e-48 | -8.615850e-47 |
| Msa0442200 | Msa0793380 | 0.860687 | 1.735572e-63 | -8.615850e-47 |
| Msa0457510 | Msa0793380 | 0.847950 | 8.358343e-60 | -8.615850e-47 |
| Msa0468130 | Msa0793380 | 0.829071 | 6.317460e-55 | -8.615850e-47 |
| Msa0469620 | Msa0793380 | -0.812364 | 4.400424e-51 | -8.615850e-47 |
| Msa0472640 | Msa0793380 | 0.800008 | 1.762935e-48 | -8.615850e-47 |
| Msa0477260 | Msa0793380 | 0.826181 | 3.122665e-54 | -8.615850e-47 |
| Msa0481280 | Msa0793380 | 0.804864 | 1.759874e-49 | -8.615850e-47 |
| Msa0256330 | Msa0793380 | 0.971098 | 1.244874e-132 | -8.615850e-47 |
| Msa0257500 | Msa0793380 | 0.807423 | 5.092883e-50 | -8.615850e-47 |
| Msa0261550 | Msa0793380 | 0.819926 | 8.984719e-53 | -8.615850e-47 |
| Msa0269450 | Msa0793380 | 0.803369 | 3.602829e-49 | -8.615850e-47 |
| Msa0271360 | Msa0793380 | 0.825114 | 5.593200e-54 | -8.615850e-47 |
| Msa0271890 | Msa0793380 | 0.834514 | 2.868255e-56 | -8.615850e-47 |
| Msa0295330 | Msa0793380 | 0.962563 | 5.015160e-121 | -8.615850e-47 |
| Msa0306210 | Msa0793380 | -0.811433 | 7.017909e-51 | -8.615850e-47 |
| Msa0309880 | Msa0793380 | 0.805744 | 1.151157e-49 | -8.615850e-47 |
| Msa0310860 | Msa0793380 | 0.836184 | 1.085543e-56 | -8.615850e-47 |
| Msa0345350 | Msa0793380 | 0.827179 | 1.804771e-54 | -8.615850e-47 |
| Msa0347610 | Msa0793380 | 0.859186 | 4.924443e-63 | -8.615850e-47 |
| Msa0358860 | Msa0793380 | 0.854924 | 8.899402e-62 | -8.615850e-47 |
| Msa0489610 | Msa0793380 | 0.852047 | 5.964065e-61 | -8.615850e-47 |
| Msa0500720 | Msa0793380 | 0.814408 | 1.564442e-51 | -8.615850e-47 |
| Msa0524600 | Msa0793380 | 0.802004 | 6.891884e-49 | -8.615850e-47 |
| Msa0534900 | Msa0793380 | 0.845079 | 5.078729e-59 | -8.615850e-47 |
| Msa0542260 | Msa0793380 | 0.806590 | 7.641470e-50 | -8.615850e-47 |
| Msa0545080 | Msa0793380 | 0.822295 | 2.556794e-53 | -8.615850e-47 |
| Msa0549780 | Msa0793380 | 0.806241 | 9.049395e-50 | -8.615850e-47 |
| Msa0553220 | Msa0793380 | -0.823994 | 1.026119e-53 | -8.615850e-47 |
| Msa0555450 | Msa0793380 | 0.804509 | 2.088149e-49 | -8.615850e-47 |
| Msa0557480 | Msa0793380 | 0.808774 | 2.625123e-50 | -8.615850e-47 |
| Msa0562440 | Msa0793380 | 0.814350 | 1.610851e-51 | -8.615850e-47 |
| Msa0592440 | Msa0793380 | 0.803415 | 3.523750e-49 | -8.615850e-47 |
| Msa0602370 | Msa0793380 | 0.807562 | 4.757807e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793380 | MtrunA17_Chr2g0317561 | 98.611 | 144 | 2 | 0 | 21 | 164 | 1 | 144 | 1.26e-102 | 290 |
| Msa0793380 | MtrunA17_Chr1g0197981 | 98.611 | 144 | 2 | 0 | 21 | 164 | 1 | 144 | 1.74e-102 | 290 |
| Msa0793380 | MtrunA17_Chr2g0282251 | 67.606 | 142 | 46 | 0 | 22 | 163 | 3 | 144 | 3.08e-67 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793380 | AT1G53035.1 | 61.806 | 144 | 55 | 0 | 21 | 164 | 7 | 150 | 9.60e-63 | 190 |
| Msa0793380 | AT1G53035.2 | 61.111 | 144 | 56 | 0 | 21 | 164 | 7 | 150 | 4.83e-62 | 189 |
| Msa0793380 | AT3G15358.1 | 60.417 | 144 | 57 | 0 | 21 | 164 | 1 | 144 | 3.67e-60 | 183 |
Find 35 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGCTTTGGCTATTTCT+TGG | 0.186754 | 5_3:+5361882 | Msa0793380:CDS |
| GAAGAAAGCAATTGAAATTA+TGG | 0.218565 | 5_3:-5361164 | None:intergenic |
| TTAAGACTTCAAAGTGGTTT+TGG | 0.231225 | 5_3:+5361485 | Msa0793380:CDS |
| GGATTATTGTTGTTCACAAT+TGG | 0.247863 | 5_3:+5361698 | Msa0793380:CDS |
| AAAGTATGGAGATTGGAATT+TGG | 0.289357 | 5_3:+5361247 | Msa0793380:exon |
| CAAACATCAGATTCCTTCTC+TGG | 0.317012 | 5_3:+5361677 | Msa0793380:CDS |
| TCTGAAGAGGTACATGTCTT+AGG | 0.336826 | 5_3:+5361593 | Msa0793380:CDS |
| GGTTGCTTGTGTTAAGGATA+TGG | 0.337831 | 5_3:+5361736 | Msa0793380:CDS |
| TCTTGCTTTGGCTATTTCTT+GGG | 0.340551 | 5_3:+5361883 | Msa0793380:CDS |
| GATTATTGTTGTTCACAATT+GGG | 0.349528 | 5_3:+5361699 | Msa0793380:CDS |
| TTCATATTTCAATGGCAGTT+TGG | 0.351079 | 5_3:+5361795 | Msa0793380:CDS |
| ATTGGAATTTGGATGGTAAC+AGG | 0.356802 | 5_3:+5361258 | Msa0793380:CDS |
| AATTGGGTTTCTTGTGTTCA+TGG | 0.359752 | 5_3:+5361715 | Msa0793380:CDS |
| TTTAACATGTGGATCATTGA+TGG | 0.365683 | 5_3:+5361562 | Msa0793380:CDS |
| TGTTGTTGGGGATCTTGCTT+TGG | 0.372557 | 5_3:+5361871 | Msa0793380:CDS |
| AGGTAGCAACCACAAAAGTA+TGG | 0.392478 | 5_3:+5361233 | Msa0793380:exon |
| ATTGGCCTAGGAATGTTGTT+GGG | 0.401238 | 5_3:+5361858 | Msa0793380:CDS |
| TTTCAAAGTTTCTTTGCTAA+AGG | 0.405302 | 5_3:+5361761 | Msa0793380:CDS |
| TTGAAGAACTTGCTTGTGAT+TGG | 0.405372 | 5_3:+5361840 | Msa0793380:CDS |
| ATTGCTTAGTTCAACAAGAA+AGG | 0.440472 | 5_3:+5361213 | Msa0793380:five_prime_UTR |
| GTTCATGGTTGCTTGTGTTA+AGG | 0.446942 | 5_3:+5361730 | Msa0793380:CDS |
| TGTGTTTCTTCATATTTCAA+TGG | 0.458849 | 5_3:+5361787 | Msa0793380:CDS |
| AACTTGCTTGTGATTGGCCT+AGG | 0.490660 | 5_3:+5361846 | Msa0793380:CDS |
| AACCACAAAAGTATGGAGAT+TGG | 0.499882 | 5_3:+5361240 | Msa0793380:exon |
| AGATCCCCAACAACATTCCT+AGG | 0.500133 | 5_3:-5361863 | None:intergenic |
| GATTGGCCTAGGAATGTTGT+TGG | 0.503249 | 5_3:+5361857 | Msa0793380:CDS |
| TATGGAGATTGGAATTTGGA+TGG | 0.527537 | 5_3:+5361251 | Msa0793380:exon |
| AAGACAGCAATAAAGCTACA+AGG | 0.572726 | 5_3:+5361626 | Msa0793380:CDS |
| TCAACAATAGCTTTAACATG+TGG | 0.588889 | 5_3:+5361551 | Msa0793380:CDS |
| TTGGCCTAGGAATGTTGTTG+GGG | 0.595854 | 5_3:+5361859 | Msa0793380:CDS |
| GAGGTACATGTCTTAGGACA+TGG | 0.605633 | 5_3:+5361599 | Msa0793380:CDS |
| GAACAACAATAATCCAGAGA+AGG | 0.611024 | 5_3:-5361690 | None:intergenic |
| GAAACTTTAAGACTTCAAAG+TGG | 0.622567 | 5_3:+5361479 | Msa0793380:intron |
| TGAATTAATAACTGATCATG+TGG | 0.652499 | 5_3:-5361656 | None:intergenic |
| AGACAGCAATAAAGCTACAA+GGG | 0.673413 | 5_3:+5361627 | Msa0793380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CACAAGTATTTGTAATTCAA+AGG | + | chr5_3:5361391-5361410 | Msa0793380:intron | 25.0% |
| !! | ATGAAATTTGAAGTGTTATG+AGG | + | chr5_3:5361450-5361469 | Msa0793380:intron | 25.0% |
| ! | TGAATTAATAACTGATCATG+TGG | - | chr5_3:5361659-5361678 | None:intergenic | 25.0% |
| !! | GATTATTGTTGTTCACAATT+GGG | + | chr5_3:5361699-5361718 | Msa0793380:CDS | 25.0% |
| ! | TTTCAAAGTTTCTTTGCTAA+AGG | + | chr5_3:5361761-5361780 | Msa0793380:CDS | 25.0% |
| ! | TGTGTTTCTTCATATTTCAA+TGG | + | chr5_3:5361787-5361806 | Msa0793380:CDS | 25.0% |
| !! | TTTGGAGATTTTACTTTGTA+GGG | + | chr5_3:5361813-5361832 | Msa0793380:CDS | 25.0% |
| !!! | TGTTTTTTCTTGTGTTTATG+TGG | + | chr5_3:5361906-5361925 | Msa0793380:CDS | 25.0% |
| ! | CACAAGTATTTGTAATTCAA+AGG | + | chr5_3:5361391-5361410 | Msa0793380:intron | 25.0% |
| !! | ATGAAATTTGAAGTGTTATG+AGG | + | chr5_3:5361450-5361469 | Msa0793380:intron | 25.0% |
| ! | TGAATTAATAACTGATCATG+TGG | - | chr5_3:5361659-5361678 | None:intergenic | 25.0% |
| !! | GATTATTGTTGTTCACAATT+GGG | + | chr5_3:5361699-5361718 | Msa0793380:CDS | 25.0% |
| ! | TTTCAAAGTTTCTTTGCTAA+AGG | + | chr5_3:5361761-5361780 | Msa0793380:CDS | 25.0% |
| ! | TGTGTTTCTTCATATTTCAA+TGG | + | chr5_3:5361787-5361806 | Msa0793380:CDS | 25.0% |
| !! | TTTGGAGATTTTACTTTGTA+GGG | + | chr5_3:5361813-5361832 | Msa0793380:CDS | 25.0% |
| !!! | TGTTTTTTCTTGTGTTTATG+TGG | + | chr5_3:5361906-5361925 | Msa0793380:CDS | 25.0% |
| ATTGCTTAGTTCAACAAGAA+AGG | + | chr5_3:5361213-5361232 | Msa0793380:five_prime_UTR | 30.0% | |
| AAAGTATGGAGATTGGAATT+TGG | + | chr5_3:5361247-5361266 | Msa0793380:exon | 30.0% | |
| !! | GAAACTTTAAGACTTCAAAG+TGG | + | chr5_3:5361479-5361498 | Msa0793380:intron | 30.0% |
| ! | TTAAGACTTCAAAGTGGTTT+TGG | + | chr5_3:5361485-5361504 | Msa0793380:CDS | 30.0% |
| !!! | TCAAAGTGGTTTTGGAAAAA+TGG | + | chr5_3:5361493-5361512 | Msa0793380:CDS | 30.0% |
| !!! | CAAAGTGGTTTTGGAAAAAT+GGG | + | chr5_3:5361494-5361513 | Msa0793380:CDS | 30.0% |
| !! | TCAACAATAGCTTTAACATG+TGG | + | chr5_3:5361551-5361570 | Msa0793380:CDS | 30.0% |
| TTTAACATGTGGATCATTGA+TGG | + | chr5_3:5361562-5361581 | Msa0793380:CDS | 30.0% | |
| ! | GGATTATTGTTGTTCACAAT+TGG | + | chr5_3:5361698-5361717 | Msa0793380:CDS | 30.0% |
| TTCATATTTCAATGGCAGTT+TGG | + | chr5_3:5361795-5361814 | Msa0793380:CDS | 30.0% | |
| ! | GTTTGGAGATTTTACTTTGT+AGG | + | chr5_3:5361812-5361831 | Msa0793380:CDS | 30.0% |
| ! | TTTTTCTTGTGTTTATGTGG+AGG | + | chr5_3:5361909-5361928 | Msa0793380:CDS | 30.0% |
| ! | TTTTCTTGTGTTTATGTGGA+GGG | + | chr5_3:5361910-5361929 | Msa0793380:CDS | 30.0% |
| ATTGCTTAGTTCAACAAGAA+AGG | + | chr5_3:5361213-5361232 | Msa0793380:five_prime_UTR | 30.0% | |
| AAAGTATGGAGATTGGAATT+TGG | + | chr5_3:5361247-5361266 | Msa0793380:exon | 30.0% | |
| !! | GAAACTTTAAGACTTCAAAG+TGG | + | chr5_3:5361479-5361498 | Msa0793380:intron | 30.0% |
| ! | TTAAGACTTCAAAGTGGTTT+TGG | + | chr5_3:5361485-5361504 | Msa0793380:CDS | 30.0% |
| !!! | TCAAAGTGGTTTTGGAAAAA+TGG | + | chr5_3:5361493-5361512 | Msa0793380:CDS | 30.0% |
| !!! | CAAAGTGGTTTTGGAAAAAT+GGG | + | chr5_3:5361494-5361513 | Msa0793380:CDS | 30.0% |
| !! | TCAACAATAGCTTTAACATG+TGG | + | chr5_3:5361551-5361570 | Msa0793380:CDS | 30.0% |
| TTTAACATGTGGATCATTGA+TGG | + | chr5_3:5361562-5361581 | Msa0793380:CDS | 30.0% | |
| ! | GGATTATTGTTGTTCACAAT+TGG | + | chr5_3:5361698-5361717 | Msa0793380:CDS | 30.0% |
| TTCATATTTCAATGGCAGTT+TGG | + | chr5_3:5361795-5361814 | Msa0793380:CDS | 30.0% | |
| ! | GTTTGGAGATTTTACTTTGT+AGG | + | chr5_3:5361812-5361831 | Msa0793380:CDS | 30.0% |
| ! | TTTTTCTTGTGTTTATGTGG+AGG | + | chr5_3:5361909-5361928 | Msa0793380:CDS | 30.0% |
| ! | TTTTCTTGTGTTTATGTGGA+GGG | + | chr5_3:5361910-5361929 | Msa0793380:CDS | 30.0% |
| ! | AACCACAAAAGTATGGAGAT+TGG | + | chr5_3:5361240-5361259 | Msa0793380:exon | 35.0% |
| ! | TTCCAATCTCCATACTTTTG+TGG | - | chr5_3:5361245-5361264 | None:intergenic | 35.0% |
| TATGGAGATTGGAATTTGGA+TGG | + | chr5_3:5361251-5361270 | Msa0793380:exon | 35.0% | |
| ATTGGAATTTGGATGGTAAC+AGG | + | chr5_3:5361258-5361277 | Msa0793380:CDS | 35.0% | |
| AATTTGGATGGTAACAGGTA+TGG | + | chr5_3:5361263-5361282 | Msa0793380:intron | 35.0% | |
| AAAAGGAGATGAATCAGAAG+AGG | - | chr5_3:5361360-5361379 | None:intergenic | 35.0% | |
| CTTGTGAAAGAAGTCTGAAA+AGG | - | chr5_3:5361377-5361396 | None:intergenic | 35.0% | |
| !!! | GATGGTTTTTTACTCTGAAG+AGG | + | chr5_3:5361580-5361599 | Msa0793380:CDS | 35.0% |
| AAGACAGCAATAAAGCTACA+AGG | + | chr5_3:5361626-5361645 | Msa0793380:CDS | 35.0% | |
| AGACAGCAATAAAGCTACAA+GGG | + | chr5_3:5361627-5361646 | Msa0793380:CDS | 35.0% | |
| GAACAACAATAATCCAGAGA+AGG | - | chr5_3:5361693-5361712 | None:intergenic | 35.0% | |
| AATTGGGTTTCTTGTGTTCA+TGG | + | chr5_3:5361715-5361734 | Msa0793380:CDS | 35.0% | |
| ! | GAGATTTTACTTTGTAGGGA+AGG | + | chr5_3:5361817-5361836 | Msa0793380:CDS | 35.0% |
| ! | TTGAAGAACTTGCTTGTGAT+TGG | + | chr5_3:5361840-5361859 | Msa0793380:CDS | 35.0% |
| !! | ATCTTGCTTTGGCTATTTCT+TGG | + | chr5_3:5361882-5361901 | Msa0793380:CDS | 35.0% |
| !! | TCTTGCTTTGGCTATTTCTT+GGG | + | chr5_3:5361883-5361902 | Msa0793380:CDS | 35.0% |
| ! | AACCACAAAAGTATGGAGAT+TGG | + | chr5_3:5361240-5361259 | Msa0793380:exon | 35.0% |
| ! | TTCCAATCTCCATACTTTTG+TGG | - | chr5_3:5361245-5361264 | None:intergenic | 35.0% |
| TATGGAGATTGGAATTTGGA+TGG | + | chr5_3:5361251-5361270 | Msa0793380:exon | 35.0% | |
| ATTGGAATTTGGATGGTAAC+AGG | + | chr5_3:5361258-5361277 | Msa0793380:CDS | 35.0% | |
| AATTTGGATGGTAACAGGTA+TGG | + | chr5_3:5361263-5361282 | Msa0793380:intron | 35.0% | |
| AAAAGGAGATGAATCAGAAG+AGG | - | chr5_3:5361360-5361379 | None:intergenic | 35.0% | |
| CTTGTGAAAGAAGTCTGAAA+AGG | - | chr5_3:5361377-5361396 | None:intergenic | 35.0% | |
| !!! | GATGGTTTTTTACTCTGAAG+AGG | + | chr5_3:5361580-5361599 | Msa0793380:CDS | 35.0% |
| AAGACAGCAATAAAGCTACA+AGG | + | chr5_3:5361626-5361645 | Msa0793380:CDS | 35.0% | |
| AGACAGCAATAAAGCTACAA+GGG | + | chr5_3:5361627-5361646 | Msa0793380:CDS | 35.0% | |
| GAACAACAATAATCCAGAGA+AGG | - | chr5_3:5361693-5361712 | None:intergenic | 35.0% | |
| AATTGGGTTTCTTGTGTTCA+TGG | + | chr5_3:5361715-5361734 | Msa0793380:CDS | 35.0% | |
| ! | GAGATTTTACTTTGTAGGGA+AGG | + | chr5_3:5361817-5361836 | Msa0793380:CDS | 35.0% |
| ! | TTGAAGAACTTGCTTGTGAT+TGG | + | chr5_3:5361840-5361859 | Msa0793380:CDS | 35.0% |
| !! | ATCTTGCTTTGGCTATTTCT+TGG | + | chr5_3:5361882-5361901 | Msa0793380:CDS | 35.0% |
| !! | TCTTGCTTTGGCTATTTCTT+GGG | + | chr5_3:5361883-5361902 | Msa0793380:CDS | 35.0% |
| AGGTAGCAACCACAAAAGTA+TGG | + | chr5_3:5361233-5361252 | Msa0793380:exon | 40.0% | |
| ! | TCTGAAGAGGTACATGTCTT+AGG | + | chr5_3:5361593-5361612 | Msa0793380:CDS | 40.0% |
| CAAACATCAGATTCCTTCTC+TGG | + | chr5_3:5361677-5361696 | Msa0793380:CDS | 40.0% | |
| GTTCATGGTTGCTTGTGTTA+AGG | + | chr5_3:5361730-5361749 | Msa0793380:CDS | 40.0% | |
| GGTTGCTTGTGTTAAGGATA+TGG | + | chr5_3:5361736-5361755 | Msa0793380:CDS | 40.0% | |
| ! | ATTGGCCTAGGAATGTTGTT+GGG | + | chr5_3:5361858-5361877 | Msa0793380:CDS | 40.0% |
| AGGTAGCAACCACAAAAGTA+TGG | + | chr5_3:5361233-5361252 | Msa0793380:exon | 40.0% | |
| ! | TCTGAAGAGGTACATGTCTT+AGG | + | chr5_3:5361593-5361612 | Msa0793380:CDS | 40.0% |
| CAAACATCAGATTCCTTCTC+TGG | + | chr5_3:5361677-5361696 | Msa0793380:CDS | 40.0% | |
| GTTCATGGTTGCTTGTGTTA+AGG | + | chr5_3:5361730-5361749 | Msa0793380:CDS | 40.0% | |
| GGTTGCTTGTGTTAAGGATA+TGG | + | chr5_3:5361736-5361755 | Msa0793380:CDS | 40.0% | |
| ! | ATTGGCCTAGGAATGTTGTT+GGG | + | chr5_3:5361858-5361877 | Msa0793380:CDS | 40.0% |
| GAGGTACATGTCTTAGGACA+TGG | + | chr5_3:5361599-5361618 | Msa0793380:CDS | 45.0% | |
| !! | AACTTGCTTGTGATTGGCCT+AGG | + | chr5_3:5361846-5361865 | Msa0793380:CDS | 45.0% |
| !! | GATTGGCCTAGGAATGTTGT+TGG | + | chr5_3:5361857-5361876 | Msa0793380:CDS | 45.0% |
| TTGGCCTAGGAATGTTGTTG+GGG | + | chr5_3:5361859-5361878 | Msa0793380:CDS | 45.0% | |
| AGATCCCCAACAACATTCCT+AGG | - | chr5_3:5361866-5361885 | None:intergenic | 45.0% | |
| TGTTGTTGGGGATCTTGCTT+TGG | + | chr5_3:5361871-5361890 | Msa0793380:CDS | 45.0% | |
| GAGGTACATGTCTTAGGACA+TGG | + | chr5_3:5361599-5361618 | Msa0793380:CDS | 45.0% | |
| !! | AACTTGCTTGTGATTGGCCT+AGG | + | chr5_3:5361846-5361865 | Msa0793380:CDS | 45.0% |
| !! | GATTGGCCTAGGAATGTTGT+TGG | + | chr5_3:5361857-5361876 | Msa0793380:CDS | 45.0% |
| TTGGCCTAGGAATGTTGTTG+GGG | + | chr5_3:5361859-5361878 | Msa0793380:CDS | 45.0% | |
| AGATCCCCAACAACATTCCT+AGG | - | chr5_3:5361866-5361885 | None:intergenic | 45.0% | |
| TGTTGTTGGGGATCTTGCTT+TGG | + | chr5_3:5361871-5361890 | Msa0793380:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5361165 | 5361946 | 5361165 | ID=Msa0793380;Name=Msa0793380 |
| chr5_3 | mRNA | 5361165 | 5361946 | 5361165 | ID=Msa0793380-mRNA-1;Parent=Msa0793380;Name=Msa0793380-mRNA-1;_AED=0.16;_eAED=0.21;_QI=87|0|0.5|1|0|0|2|0|164 |
| chr5_3 | exon | 5361165 | 5361279 | 5361165 | ID=Msa0793380-mRNA-1:exon:2049;Parent=Msa0793380-mRNA-1 |
| chr5_3 | exon | 5361480 | 5361946 | 5361480 | ID=Msa0793380-mRNA-1:exon:2050;Parent=Msa0793380-mRNA-1 |
| chr5_3 | five_prime_UTR | 5361165 | 5361251 | 5361165 | ID=Msa0793380-mRNA-1:five_prime_utr;Parent=Msa0793380-mRNA-1 |
| chr5_3 | CDS | 5361252 | 5361279 | 5361252 | ID=Msa0793380-mRNA-1:cds;Parent=Msa0793380-mRNA-1 |
| chr5_3 | CDS | 5361480 | 5361946 | 5361480 | ID=Msa0793380-mRNA-1:cds;Parent=Msa0793380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
