AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115280 MtrunA17_Chr7g0261511 89.151 212 2 1 1 191 1 212 3.32e-133 371
Msa1115280 MtrunA17_Chr1g0183621 72.642 212 37 1 1 191 5 216 1.13e-109 312
Msa1115280 MtrunA17_Chr2g0303251 70.093 214 39 2 1 189 1 214 2.74e-94 273
Msa1115280 MtrunA17_Chr2g0300321 40.826 218 98 3 3 189 4 221 2.90e-34 120
Msa1115280 MtrunA17_Chr8g0343561 43.182 176 79 1 3 157 4 179 1.84e-31 113
Msa1115280 MtrunA17_Chr4g0028231 30.108 186 99 3 1 160 5 185 1.94e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115280 AT1G03950.1 75.714 210 30 1 1 189 1 210 3.36e-110 313
Msa1115280 AT5G44560.1 65.455 220 45 2 1 189 1 220 7.62e-93 270
Msa1115280 AT5G44560.2 64.500 200 40 2 21 189 1 200 7.23e-82 241
Msa1115280 AT5G44560.4 67.416 178 37 1 1 157 1 178 2.98e-79 234
Msa1115280 AT5G44560.3 65.217 138 27 1 1 117 1 138 5.93e-56 174
Msa1115280 AT2G06530.1 43.182 220 93 5 2 189 4 223 2.95e-37 129
Msa1115280 AT2G06530.2 42.289 201 84 5 21 189 2 202 1.74e-30 110
Msa1115280 AT5G22950.1 29.130 230 118 5 1 190 5 229 1.85e-12 63.9

Find 45 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTGTGCCGATTGTTTC+TGG 0.092577 7_3:+62718983 None:intergenic
ATAACTTTGGCTTGCTTTGC+TGG 0.189100 7_3:+62719015 None:intergenic
CTTTGCTGCGATTCTCCCTT+TGG 0.289266 7_3:+62717761 None:intergenic
ATAGGTATTGAGAGGGAAAT+TGG 0.295401 7_3:-62720408 Msa1115280:intron
ACCTTTGGCGGTGGGTTTCT+TGG 0.303398 7_3:+62720637 None:intergenic
GGCAATGTCAGCTATGAATA+AGG 0.369472 7_3:-62719784 Msa1115280:intron
TTTGCTGCGATTCTCCCTTT+GGG 0.375553 7_3:+62717762 None:intergenic
CTGGAATTCCTGCATAACTT+TGG 0.413362 7_3:+62719002 None:intergenic
GGAAATTGGATCATTACAAT+TGG 0.414552 7_3:-62720394 Msa1115280:CDS
TGCTAATCTTCAGGGTAGTC+GGG 0.416103 7_3:-62720013 Msa1115280:intron
TGATGACCTTGAGAAGCGTT+TGG 0.421971 7_3:-62717496 Msa1115280:CDS
GCACATTCTTCTGTTGCTGT+TGG 0.431120 7_3:-62719825 Msa1115280:CDS
TCTGTTGCTGTTGGCATGAA+AGG 0.439539 7_3:-62719816 Msa1115280:CDS
TTGCTAATCTTCAGGGTAGT+CGG 0.468100 7_3:-62720014 Msa1115280:intron
TGACAGGTGCTTGATGAAAT+CGG 0.480841 7_3:-62717909 Msa1115280:intron
TGGCATGAAAGGCGCTACTA+AGG 0.493496 7_3:-62719805 Msa1115280:CDS
CGGTGTCGATATTGCCTCAC+AGG 0.505099 7_3:-62717889 Msa1115280:intron
ATTAAGAGAACTGCTAAGAC+AGG 0.519875 7_3:-62720250 Msa1115280:CDS
AGAAGAAGAACCTTTGGCGG+TGG 0.535725 7_3:+62720628 None:intergenic
AAAGCAAGCCAAAGTTATGC+AGG 0.535984 7_3:-62719010 Msa1115280:CDS
TGACCTTGAGAAGCGTTTGG+CGG 0.541826 7_3:-62717493 Msa1115280:CDS
GAAGAAGAACCTTTGGCGGT+GGG 0.543040 7_3:+62720629 None:intergenic
ACCAAGAAACCCACCGCCAA+AGG 0.550200 7_3:-62720638 Msa1115280:intron
CCAGAAACAATCGGCACAGA+TGG 0.552247 7_3:-62718983 Msa1115280:CDS
GCAGGAATTCCAGAAACAAT+CGG 0.554202 7_3:-62718992 Msa1115280:CDS
GCAAAGAATACTGAAAATGT+TGG 0.554829 7_3:-62717744 Msa1115280:CDS
AGAATACTGAAAATGTTGGC+AGG 0.560171 7_3:-62717740 Msa1115280:intron
AGATGTCATAGATGATGCCT+TGG 0.571244 7_3:-62718845 Msa1115280:CDS
AGTTATCGTCAGCTCCCAAA+GGG 0.573333 7_3:-62717776 Msa1115280:CDS
TTCAGCTTCATCATCATCCA+AGG 0.587316 7_3:+62718828 None:intergenic
AGAAGAAGAAGAACCTTTGG+CGG 0.589246 7_3:+62720625 None:intergenic
GAGCCGCCAAACGCTTCTCA+AGG 0.592287 7_3:+62717490 None:intergenic
CAGTTATCGTCAGCTCCCAA+AGG 0.599044 7_3:-62717777 Msa1115280:CDS
TCATATATATAGGTATTGAG+AGG 0.599716 7_3:-62720416 Msa1115280:intron
AGAGAATAGATTACCTCTAG+TGG 0.604125 7_3:+62720489 None:intergenic
GGATGATGATGAAGCTGAAG+AGG 0.605718 7_3:-62718824 Msa1115280:CDS
TGGTGAAGATGTTCATCGTG+CGG 0.621599 7_3:+62720657 None:intergenic
GGTAGTCGGGCTCAGATGAG+AGG 0.622685 7_3:-62720000 Msa1115280:CDS
CATATATATAGGTATTGAGA+GGG 0.628943 7_3:-62720415 Msa1115280:intron
AAAGTAGTAGGAAAGTAACA+AGG 0.639375 7_3:-62720731 Msa1115280:five_prime_UTR
TGCGGTATTGTCAACAACGA+AGG 0.653386 7_3:+62720675 None:intergenic
GAAATGACTAACGCCACTAG+AGG 0.662249 7_3:-62720502 Msa1115280:intron
AGGCATAGCAACTCACACGC+AGG 0.676531 7_3:-62719980 Msa1115280:intron
AACTGCTAAGACAGGAAACG+AGG 0.681032 7_3:-62720242 Msa1115280:intron
AAAGCTTATTCCTACCTGTG+AGG 0.707349 7_3:+62717875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTAATTAATAAAATT+AGG + chr7_3:62717858-62717877 None:intergenic 0.0%
!! AAAAAAAATATTATAATAAA+AGG + chr7_3:62719539-62719558 None:intergenic 0.0%
!! TTTAATACTATCATATATAT+AGG - chr7_3:62717873-62717892 Msa1115280:intron 10.0%
!! TAAAGTTAGTAATAATAATA+TGG - chr7_3:62717988-62718007 Msa1115280:intron 10.0%
!!! ATTTATAAATTAGTTTAAGA+GGG + chr7_3:62720128-62720147 None:intergenic 10.0%
!!! TATTTATAAATTAGTTTAAG+AGG + chr7_3:62720129-62720148 None:intergenic 10.0%
!! AAAACAAAAACAAAAACAAA+GGG + chr7_3:62718362-62718381 None:intergenic 15.0%
!! AAAAACAAAAACAAAAACAA+AGG + chr7_3:62718363-62718382 None:intergenic 15.0%
!!! TAGCATTTGATTTTTATTTA+TGG - chr7_3:62718912-62718931 Msa1115280:intron 15.0%
!! AAACAAAAATATAGTTACAT+GGG - chr7_3:62720023-62720042 Msa1115280:intron 15.0%
!!! AAATTTGATGTTTTATTCTC+AGG - chr7_3:62718214-62718233 Msa1115280:intron 20.0%
!!! AATTTGATGTTTTATTCTCA+GGG - chr7_3:62718215-62718234 Msa1115280:intron 20.0%
!!! TGTCCATTTTCATAATATAA+AGG - chr7_3:62718573-62718592 Msa1115280:intron 20.0%
!!! GTCCATTTTCATAATATAAA+GGG - chr7_3:62718574-62718593 Msa1115280:intron 20.0%
!!! TGCAAATGAAAATTCTTTTT+TGG - chr7_3:62718835-62718854 Msa1115280:CDS 20.0%
!!! AAATGAAAATTCTTTTTTGG+AGG - chr7_3:62718838-62718857 Msa1115280:CDS 20.0%
!!! TATCAATGTTTTGTTTAACT+CGG + chr7_3:62719182-62719201 None:intergenic 20.0%
!! GTTAAACAAAACATTGATAT+TGG - chr7_3:62719183-62719202 Msa1115280:intron 20.0%
!!! TTTTCTAGAATTTTACAAGT+TGG - chr7_3:62719363-62719382 Msa1115280:intron 20.0%
!!! CATGTAACTATATTTTTGTT+TGG + chr7_3:62720024-62720043 None:intergenic 20.0%
!! CAAACAAAAATATAGTTACA+TGG - chr7_3:62720022-62720041 Msa1115280:intron 20.0%
!!! GTATTTTATTTGTACTCTTT+TGG - chr7_3:62720499-62720518 Msa1115280:intron 20.0%
!!! AACTTTCTTATTGTTTTTAG+AGG + chr7_3:62720611-62720630 None:intergenic 20.0%
!! ACAAGTTAAAATTTCTTAAG+CGG - chr7_3:62720726-62720745 Msa1115280:five_prime_UTR 20.0%
! AGAAAAAAAGAGAAAGTAGT+AGG - chr7_3:62717556-62717575 Msa1115280:intron 25.0%
!!! TCATATATATAGGTATTGAG+AGG - chr7_3:62717883-62717902 Msa1115280:intron 25.0%
!!! CATATATATAGGTATTGAGA+GGG - chr7_3:62717884-62717903 Msa1115280:intron 25.0%
!!! TATGGATTGTTTGTTTTGTT+AGG - chr7_3:62718006-62718025 Msa1115280:intron 25.0%
!!! ATCTGCAAATTTTTAGTCAT+AGG - chr7_3:62718093-62718112 Msa1115280:intron 25.0%
! TTATCTACTGACATAAACAA+AGG + chr7_3:62718162-62718181 None:intergenic 25.0%
! TCAAATAAGTTAATTCGAAC+AGG - chr7_3:62718184-62718203 Msa1115280:intron 25.0%
!! TATGATATTTGACTTAGCTA+TGG - chr7_3:62718422-62718441 Msa1115280:intron 25.0%
! CACCCTTTATATTATGAAAA+TGG + chr7_3:62718579-62718598 None:intergenic 25.0%
!! CATTTTCATAATATAAAGGG+TGG - chr7_3:62718577-62718596 Msa1115280:intron 25.0%
! ATATTGTTCCAAAACTTGAT+TGG - chr7_3:62718769-62718788 Msa1115280:intron 25.0%
! TATTGTTCCAAAACTTGATT+GGG - chr7_3:62718770-62718789 Msa1115280:intron 25.0%
!! TGTAATAGCAACATTTTGTT+TGG - chr7_3:62718794-62718813 Msa1115280:intron 25.0%
!! TAGAGTTTTCATGAATTTTG+AGG - chr7_3:62718872-62718891 Msa1115280:intron 25.0%
!! TGTTCATTTGCTAAATATTG+TGG - chr7_3:62719021-62719040 Msa1115280:CDS 25.0%
! AATGGTGTAGAAAATATTTG+TGG + chr7_3:62719212-62719231 None:intergenic 25.0%
! AATCATTGTTTACACTTCAA+TGG - chr7_3:62719398-62719417 Msa1115280:intron 25.0%
! TTAAAATGACCTGTAGTTTA+TGG - chr7_3:62719619-62719638 Msa1115280:intron 25.0%
! GTAAATAAACCAATCCAAAT+AGG + chr7_3:62719805-62719824 None:intergenic 25.0%
! TTTATTCACAAAGAGTAAGA+TGG - chr7_3:62720281-62720300 Msa1115280:intron 25.0%
! TTATTCACAAAGAGTAAGAT+GGG - chr7_3:62720282-62720301 Msa1115280:intron 25.0%
! GCTAATATCATCTTAATGTA+AGG + chr7_3:62720321-62720340 None:intergenic 25.0%
!!! CTTATTGTTTTTAGAGGATA+GGG + chr7_3:62720605-62720624 None:intergenic 25.0%
!!! TCTTATTGTTTTTAGAGGAT+AGG + chr7_3:62720606-62720625 None:intergenic 25.0%
! CAATAAGAAAGTTAAGAGAA+AGG - chr7_3:62720618-62720637 Msa1115280:intron 25.0%
! GTAATAACATCAAAATTCCA+AGG + chr7_3:62720772-62720791 None:intergenic 25.0%
!!! ATTTTGATGTTATTACAGCT+CGG - chr7_3:62720776-62720795 Msa1115280:five_prime_UTR 25.0%
! AAAGTTTTACGAGTAGAACA+CGG - chr7_3:62717506-62717525 Msa1115280:CDS 30.0%
AAAGTAGTAGGAAAGTAACA+AGG - chr7_3:62717568-62717587 Msa1115280:intron 30.0%
!! TTTAATTGATTTTCCTGCAG+AGG - chr7_3:62717754-62717773 Msa1115280:CDS 30.0%
GGAAATTGGATCATTACAAT+TGG - chr7_3:62717905-62717924 Msa1115280:CDS 30.0%
ATTGTTCCAAAACTTGATTG+GGG - chr7_3:62718771-62718790 Msa1115280:intron 30.0%
TGGAGCAATGAACAATATTA+AGG - chr7_3:62718968-62718987 Msa1115280:intron 30.0%
GGAGCAATGAACAATATTAA+GGG - chr7_3:62718969-62718988 Msa1115280:intron 30.0%
AACAATATTAAGGGTTGCTA+TGG - chr7_3:62718978-62718997 Msa1115280:CDS 30.0%
AAGGGACTTCAGAAATTAAA+AGG - chr7_3:62719106-62719125 Msa1115280:intron 30.0%
TTGAAGAACTGCTATTATCA+AGG + chr7_3:62719155-62719174 None:intergenic 30.0%
AACGGTAAAAGACTGAAAAA+TGG + chr7_3:62719230-62719249 None:intergenic 30.0%
! TTTACCGTTTCCTAATTTGT+TGG - chr7_3:62719241-62719260 Msa1115280:intron 30.0%
GAATCCAACAAATTAGGAAA+CGG + chr7_3:62719248-62719267 None:intergenic 30.0%
TGCAATGAATCCAACAAATT+AGG + chr7_3:62719254-62719273 None:intergenic 30.0%
AATTATGCTTCTCTGTTTAC+AGG - chr7_3:62719566-62719585 Msa1115280:intron 30.0%
! CCTATTTTGTATCCTAACTT+CGG - chr7_3:62719702-62719721 Msa1115280:intron 30.0%
TTTATTCTTGATTTCCCCAA+GGG + chr7_3:62719736-62719755 None:intergenic 30.0%
! TTTTATTCTTGATTTCCCCA+AGG + chr7_3:62719737-62719756 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr7_3:62719887-62719906 None:intergenic 30.0%
AAATTATCTCCACAAGATCA+TGG + chr7_3:62720066-62720085 None:intergenic 30.0%
TGATCTTGTGGAGATAATTT+AGG - chr7_3:62720066-62720085 Msa1115280:intron 30.0%
GATCTTGTGGAGATAATTTA+GGG - chr7_3:62720067-62720086 Msa1115280:intron 30.0%
ATCTTGTGGAGATAATTTAG+GGG - chr7_3:62720068-62720087 Msa1115280:intron 30.0%
CTAATAATCAGTGAAAGCTT+AGG - chr7_3:62720091-62720110 Msa1115280:intron 30.0%
! AATTAGTTTAAGAGGGTATG+CGG + chr7_3:62720121-62720140 None:intergenic 30.0%
TAGTTACAAGGTTTAAGGAA+TGG - chr7_3:62720255-62720274 Msa1115280:CDS 30.0%
GCAAAGAATACTGAAAATGT+TGG - chr7_3:62720555-62720574 Msa1115280:intron 30.0%
!! TTTGCAAGTTTTAATGACCT+TGG - chr7_3:62720752-62720771 Msa1115280:five_prime_UTR 30.0%
! TTTTGATGTTATTACAGCTC+GGG - chr7_3:62720777-62720796 Msa1115280:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAACCTT+TGG + chr7_3:62717680-62717699 None:intergenic 35.0%
AGAGAATAGATTACCTCTAG+TGG + chr7_3:62717813-62717832 None:intergenic 35.0%
!! ATAGGTATTGAGAGGGAAAT+TGG - chr7_3:62717891-62717910 Msa1115280:CDS 35.0%
ATTAAGAGAACTGCTAAGAC+AGG - chr7_3:62718049-62718068 Msa1115280:intron 35.0%
CAACAGATTGCTAATCTTCA+GGG - chr7_3:62718278-62718297 Msa1115280:intron 35.0%
!! TTGTTGACTTGTGTTTGAGA+TGG - chr7_3:62718390-62718409 Msa1115280:intron 35.0%
! ATTACACCCCAATCAAGTTT+TGG + chr7_3:62718780-62718799 None:intergenic 35.0%
!!! CTTTTTTGGAGGTGATATAG+AGG - chr7_3:62718849-62718868 Msa1115280:CDS 35.0%
CATGTTAGTCCATAAACTAC+AGG + chr7_3:62719631-62719650 None:intergenic 35.0%
CCGAAGTTAGGATACAAAAT+AGG + chr7_3:62719705-62719724 None:intergenic 35.0%
CTTAACTAACTTCACCTAGT+AGG + chr7_3:62719781-62719800 None:intergenic 35.0%
CTACTAGGTGAAGTTAGTTA+AGG - chr7_3:62719779-62719798 Msa1115280:intron 35.0%
GAAGTTAGTTAAGGCCTATT+TGG - chr7_3:62719788-62719807 Msa1115280:CDS 35.0%
TAGTTAAGGCCTATTTGGAT+TGG - chr7_3:62719793-62719812 Msa1115280:CDS 35.0%
TAAGAGCTTGTGAGATTGTT+TGG - chr7_3:62719830-62719849 Msa1115280:CDS 35.0%
AAGAGCTTGTGAGATTGTTT+GGG - chr7_3:62719831-62719850 Msa1115280:CDS 35.0%
! CTTATTTCTTAAAGCTCTCC+AGG - chr7_3:62719901-62719920 Msa1115280:intron 35.0%
TCTGATTTCTTAAGCTATCC+TGG + chr7_3:62719922-62719941 None:intergenic 35.0%
!! TGCATAAGCTATTTCTGTGA+CGG + chr7_3:62719954-62719973 None:intergenic 35.0%
! ATTAGTTTAAGAGGGTATGC+GGG + chr7_3:62720120-62720139 None:intergenic 35.0%
GTCTTCAGAAGGAAACATAA+TGG + chr7_3:62720182-62720201 None:intergenic 35.0%
TGAAGTTCAGAAGTAGTTTC+AGG + chr7_3:62720204-62720223 None:intergenic 35.0%
CAGACTGTCATGATTTCTTA+TGG - chr7_3:62720222-62720241 Msa1115280:intron 35.0%
CCTTAAACCTTGTAACTAAG+TGG + chr7_3:62720253-62720272 None:intergenic 35.0%
CCACTTAGTTACAAGGTTTA+AGG - chr7_3:62720250-62720269 Msa1115280:CDS 35.0%
GTAAGATGGGAATGAATTCA+AGG - chr7_3:62720295-62720314 Msa1115280:intron 35.0%
! ATATCATCTGACAGTGCTTT+TGG - chr7_3:62720464-62720483 Msa1115280:intron 35.0%
AGAATACTGAAAATGTTGGC+AGG - chr7_3:62720559-62720578 Msa1115280:intron 35.0%
CTTGTAATTCGCGAAGAATT+TGG - chr7_3:62720684-62720703 Msa1115280:five_prime_UTR 35.0%
AGAAGAAGAAGAACCTTTGG+CGG + chr7_3:62717677-62717696 None:intergenic 40.0%
GCAACAGATTGCTAATCTTC+AGG - chr7_3:62718277-62718296 Msa1115280:intron 40.0%
TTGCTAATCTTCAGGGTAGT+CGG - chr7_3:62718285-62718304 Msa1115280:intron 40.0%
CAAAGGGTTCAAGTGAACAA+TGG + chr7_3:62718346-62718365 None:intergenic 40.0%
GGCAATGTCAGCTATGAATA+AGG - chr7_3:62718515-62718534 Msa1115280:intron 40.0%
TACACCAGGTTTCCAAGAAA+GGG - chr7_3:62718605-62718624 Msa1115280:intron 40.0%
!! CAAGCTGAGAAGTTGTTTCT+AGG - chr7_3:62718665-62718684 Msa1115280:intron 40.0%
GATTTGAATCTGTGACATCC+AGG - chr7_3:62718687-62718706 Msa1115280:intron 40.0%
TCATGAACTAACATGAGAGC+AGG + chr7_3:62718748-62718767 None:intergenic 40.0%
TTTGTGCGAGTTTGATGGAA+TGG - chr7_3:62718948-62718967 Msa1115280:intron 40.0%
AGAACTGCTATTATCAAGGC+TGG + chr7_3:62719151-62719170 None:intergenic 40.0%
GTTGGATTCATTGCAGCAAA+TGG - chr7_3:62719259-62719278 Msa1115280:intron 40.0%
!! ATAACTTTGGCTTGCTTTGC+TGG + chr7_3:62719287-62719306 None:intergenic 40.0%
AAAGCAAGCCAAAGTTATGC+AGG - chr7_3:62719289-62719308 Msa1115280:intron 40.0%
CTGGAATTCCTGCATAACTT+TGG + chr7_3:62719300-62719319 None:intergenic 40.0%
GCAGGAATTCCAGAAACAAT+CGG - chr7_3:62719307-62719326 Msa1115280:intron 40.0%
AGATGTCATAGATGATGCCT+TGG - chr7_3:62719454-62719473 Msa1115280:intron 40.0%
TTCAGCTTCATCATCATCCA+AGG + chr7_3:62719474-62719493 None:intergenic 40.0%
ACCTTGTGTTACAATCCTTG+AGG - chr7_3:62719654-62719673 Msa1115280:intron 40.0%
CCTTGTGTTACAATCCTTGA+GGG - chr7_3:62719655-62719674 Msa1115280:intron 40.0%
CTACCAAATCGTATCCTACT+AGG - chr7_3:62719764-62719783 Msa1115280:intron 40.0%
TCACCTAGTAGGATACGATT+TGG + chr7_3:62719770-62719789 None:intergenic 40.0%
! ACATTATCAAGAGAAGCGTG+TGG - chr7_3:62720148-62720167 Msa1115280:intron 40.0%
! AGTAGTTTCAGGTCTTCAGA+AGG + chr7_3:62720193-62720212 None:intergenic 40.0%
! TCACTTACCCTTTTCTTGAC+AGG - chr7_3:62720374-62720393 Msa1115280:intron 40.0%
TCAAGCACCTGTCAAGAAAA+GGG + chr7_3:62720384-62720403 None:intergenic 40.0%
ATCAAGCACCTGTCAAGAAA+AGG + chr7_3:62720385-62720404 None:intergenic 40.0%
TGACAGGTGCTTGATGAAAT+CGG - chr7_3:62720390-62720409 Msa1115280:intron 40.0%
AAAGCTTATTCCTACCTGTG+AGG + chr7_3:62720427-62720446 None:intergenic 40.0%
AGGATAGGGAAAGAGTTACA+CGG + chr7_3:62720591-62720610 None:intergenic 40.0%
GAATTACAAGCTACACAGAG+GGG + chr7_3:62720674-62720693 None:intergenic 40.0%
CGAATTACAAGCTACACAGA+GGG + chr7_3:62720675-62720694 None:intergenic 40.0%
TGCGGTATTGTCAACAACGA+AGG + chr7_3:62717627-62717646 None:intergenic 45.0%
TGGTGAAGATGTTCATCGTG+CGG + chr7_3:62717645-62717664 None:intergenic 45.0%
GAAATGACTAACGCCACTAG+AGG - chr7_3:62717797-62717816 Msa1115280:intron 45.0%
AACTGCTAAGACAGGAAACG+AGG - chr7_3:62718057-62718076 Msa1115280:intron 45.0%
TACTAGCTCGTCAGCTGATA+AGG - chr7_3:62718249-62718268 Msa1115280:intron 45.0%
TGCTAATCTTCAGGGTAGTC+GGG - chr7_3:62718286-62718305 Msa1115280:intron 45.0%
!!! GGTTGCTTGTCATTTTGTGC+AGG - chr7_3:62718443-62718462 Msa1115280:intron 45.0%
GCACATTCTTCTGTTGCTGT+TGG - chr7_3:62718474-62718493 Msa1115280:intron 45.0%
! TCTGTTGCTGTTGGCATGAA+AGG - chr7_3:62718483-62718502 Msa1115280:intron 45.0%
GTACACCAGGTTTCCAAGAA+AGG - chr7_3:62718604-62718623 Msa1115280:intron 45.0%
ACACCAGGTTTCCAAGAAAG+GGG - chr7_3:62718606-62718625 Msa1115280:intron 45.0%
CTGGGGAGGGTAAATCTATA+TGG - chr7_3:62718631-62718650 Msa1115280:intron 45.0%
GCAAGTTTGTGCGAGTTTGA+TGG - chr7_3:62718943-62718962 Msa1115280:intron 45.0%
! GGATGATGATGAAGCTGAAG+AGG - chr7_3:62719475-62719494 Msa1115280:intron 45.0%
CCCTCAAGGATTGTAACACA+AGG + chr7_3:62719658-62719677 None:intergenic 45.0%
! CTAAGCATTGCTAACCCTCA+AGG + chr7_3:62719672-62719691 None:intergenic 45.0%
AGTTACATGGGTCATGCCAT+TGG - chr7_3:62720035-62720054 Msa1115280:intron 45.0%
GTTACATGGGTCATGCCATT+GGG - chr7_3:62720036-62720055 Msa1115280:intron 45.0%
CAAGATCATGGATAGCCCAA+TGG + chr7_3:62720054-62720073 None:intergenic 45.0%
TTGGGCTATCCATGATCTTG+TGG - chr7_3:62720054-62720073 Msa1115280:intron 45.0%
! GGCTTTGCCACTTAGTTACA+AGG - chr7_3:62720243-62720262 Msa1115280:CDS 45.0%
AGTTATCGTCAGCTCCCAAA+GGG - chr7_3:62720523-62720542 Msa1115280:CDS 45.0%
TTTGCTGCGATTCTCCCTTT+GGG + chr7_3:62720540-62720559 None:intergenic 45.0%
GCGAATTACAAGCTACACAG+AGG + chr7_3:62720676-62720695 None:intergenic 45.0%
!! TGATGACCTTGAGAAGCGTT+TGG - chr7_3:62720803-62720822 Msa1115280:five_prime_UTR 45.0%
!! GTTAAATTAAATATATTAAA+AGG + chr7_3:62717954-62717973 None:intergenic 5.0%
GAAGAAGAACCTTTGGCGGT+GGG + chr7_3:62717673-62717692 None:intergenic 50.0%
AGAAGAAGAACCTTTGGCGG+TGG + chr7_3:62717674-62717693 None:intergenic 50.0%
CTCGTCAGCTGATAAGGCTT+AGG - chr7_3:62718255-62718274 Msa1115280:intron 50.0%
!! TGGCATGAAAGGCGCTACTA+AGG - chr7_3:62718494-62718513 Msa1115280:intron 50.0%
AAAGGGTGGTCTAGTACACC+AGG - chr7_3:62718591-62718610 Msa1115280:intron 50.0%
CACCAGGTTTCCAAGAAAGG+GGG - chr7_3:62718607-62718626 Msa1115280:intron 50.0%
GTTTCCAAGAAAGGGGGTCT+GGG - chr7_3:62718613-62718632 Msa1115280:intron 50.0%
TTTCCAAGAAAGGGGGTCTG+GGG - chr7_3:62718614-62718633 Msa1115280:intron 50.0%
TGTGACATCCAGGTCACACA+AGG - chr7_3:62718697-62718716 Msa1115280:intron 50.0%
ACTAACATGAGAGCAGGCCT+TGG + chr7_3:62718742-62718761 None:intergenic 50.0%
TGTGTGTGCATGTGACAGGA+GGG + chr7_3:62719070-62719089 None:intergenic 50.0%
TGTGTGTGTGTGCATGTGAC+AGG + chr7_3:62719074-62719093 None:intergenic 50.0%
CACACACACACACACACACA+CGG - chr7_3:62719082-62719101 Msa1115280:intron 50.0%
ACACACACACACACACGGAA+AGG - chr7_3:62719087-62719106 Msa1115280:intron 50.0%
CACACACACACACACGGAAA+GGG - chr7_3:62719088-62719107 Msa1115280:intron 50.0%
!! CCATCTGTGCCGATTGTTTC+TGG + chr7_3:62719319-62719338 None:intergenic 50.0%
CCAGAAACAATCGGCACAGA+TGG - chr7_3:62719316-62719335 Msa1115280:intron 50.0%
!! AGGGTGTTACTGCCGAAGTT+AGG + chr7_3:62719717-62719736 None:intergenic 50.0%
AACTTCGGCAGTAACACCCT+TGG - chr7_3:62719717-62719736 Msa1115280:intron 50.0%
ACTTCGGCAGTAACACCCTT+GGG - chr7_3:62719718-62719737 Msa1115280:intron 50.0%
GTCGATATTGCCTCACAGGT+AGG - chr7_3:62720414-62720433 Msa1115280:intron 50.0%
CAGTTATCGTCAGCTCCCAA+AGG - chr7_3:62720522-62720541 Msa1115280:CDS 50.0%
CTTTGCTGCGATTCTCCCTT+TGG + chr7_3:62720541-62720560 None:intergenic 50.0%
!! TGACCTTGAGAAGCGTTTGG+CGG - chr7_3:62720806-62720825 Msa1115280:five_prime_UTR 50.0%
ACCAAGAAACCCACCGCCAA+AGG - chr7_3:62717661-62717680 Msa1115280:intron 55.0%
! ACCTTTGGCGGTGGGTTTCT+TGG + chr7_3:62717665-62717684 None:intergenic 55.0%
AGGCATAGCAACTCACACGC+AGG - chr7_3:62718319-62718338 Msa1115280:intron 55.0%
GACCCCCTTTCTTGGAAACC+TGG + chr7_3:62718612-62718631 None:intergenic 55.0%
GGTTTCCAAGAAAGGGGGTC+TGG - chr7_3:62718612-62718631 Msa1115280:intron 55.0%
GCAACCTTGCGATTGTGCCA+AGG - chr7_3:62718722-62718741 Msa1115280:intron 55.0%
GTGTGTGTGCATGTGACAGG+AGG + chr7_3:62719071-62719090 None:intergenic 55.0%
CTTCGGCAGTAACACCCTTG+GGG - chr7_3:62719719-62719738 Msa1115280:intron 55.0%
!! CGGTGTCGATATTGCCTCAC+AGG - chr7_3:62720410-62720429 Msa1115280:intron 55.0%
CTCTCACGAAGAGCCTCTGC+AGG + chr7_3:62717770-62717789 None:intergenic 60.0%
GGTAGTCGGGCTCAGATGAG+AGG - chr7_3:62718299-62718318 Msa1115280:intron 60.0%
CAAGAAAGGGGGTCTGGGGA+GGG - chr7_3:62718618-62718637 Msa1115280:intron 60.0%
GGTTGCTGCCTTGTGTGACC+TGG + chr7_3:62718708-62718727 None:intergenic 60.0%
CAGGCCTTGGCACAATCGCA+AGG + chr7_3:62718729-62718748 None:intergenic 60.0%
GAGCCGCCAAACGCTTCTCA+AGG + chr7_3:62720812-62720831 None:intergenic 60.0%
CCTCCCCAGACCCCCTTTCT+TGG + chr7_3:62718620-62718639 None:intergenic 65.0%
CCAAGAAAGGGGGTCTGGGG+AGG - chr7_3:62718617-62718636 Msa1115280:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 62717476 62720845 62717476 ID=Msa1115280;Name=Msa1115280
chr7_3 mRNA 62717476 62720845 62717476 ID=Msa1115280-mRNA-1;Parent=Msa1115280;Name=Msa1115280-mRNA-1;_AED=0.15;_eAED=0.15;_QI=173|0.1|0.18|1|0.9|0.90|11|0|191
chr7_3 exon 62717476 62717527 62717476 ID=Msa1115280-mRNA-1:exon:14548;Parent=Msa1115280-mRNA-1
chr7_3 exon 62717741 62717796 62717741 ID=Msa1115280-mRNA-1:exon:14547;Parent=Msa1115280-mRNA-1
chr7_3 exon 62717890 62717925 62717890 ID=Msa1115280-mRNA-1:exon:14546;Parent=Msa1115280-mRNA-1
chr7_3 exon 62718801 62718881 62718801 ID=Msa1115280-mRNA-1:exon:14545;Parent=Msa1115280-mRNA-1
chr7_3 exon 62718975 62719046 62718975 ID=Msa1115280-mRNA-1:exon:14544;Parent=Msa1115280-mRNA-1
chr7_3 exon 62719785 62719856 62719785 ID=Msa1115280-mRNA-1:exon:14543;Parent=Msa1115280-mRNA-1
chr7_3 exon 62719981 62720022 62719981 ID=Msa1115280-mRNA-1:exon:14542;Parent=Msa1115280-mRNA-1
chr7_3 exon 62720243 62720293 62720243 ID=Msa1115280-mRNA-1:exon:14541;Parent=Msa1115280-mRNA-1
chr7_3 exon 62720392 62720426 62720392 ID=Msa1115280-mRNA-1:exon:14540;Parent=Msa1115280-mRNA-1
chr7_3 exon 62720503 62720547 62720503 ID=Msa1115280-mRNA-1:exon:14539;Parent=Msa1115280-mRNA-1
chr7_3 exon 62720639 62720845 62720639 ID=Msa1115280-mRNA-1:exon:14538;Parent=Msa1115280-mRNA-1
chr7_3 five_prime_UTR 62720673 62720845 62720673 ID=Msa1115280-mRNA-1:five_prime_utr;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62720639 62720672 62720639 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62720503 62720547 62720503 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62720392 62720426 62720392 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62720243 62720293 62720243 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62719981 62720022 62719981 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62719785 62719856 62719785 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62718975 62719046 62718975 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62718801 62718881 62718801 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62717890 62717925 62717890 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62717741 62717796 62717741 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
chr7_3 CDS 62717476 62717527 62717476 ID=Msa1115280-mRNA-1:cds;Parent=Msa1115280-mRNA-1
Gene Sequence

>Msa1115280

ATGAACATCTTCACCAAGAAACCCACCGCCAAAGAGGCTCTTCGTGAGAGTAAACGTGAAATGACTAACGCCACTAGAGGTATTGAGAGGGAAATTGGATCATTACAATTGGAAGAAAAGAAATTAGTTGCTGAGATTAAGAGAACTGCTAAGACAGGAAACGAGGGTAGTCGGGCTCAGATGAGAGGCATAGCAACTCACACGCAGGCAATGCATGCACATTCTTCTGTTGCTGTTGGCATGAAAGGCGCTACTAAGGCAATGTCAGCTATGAATAAGCAAATGGAACCAGCAAAGCAAGCCAAAGTTATGCAGGAATTCCAGAAACAATCGGCACAGATGGATATGACTACTGAAATGATGTCAGATGTCATAGATGATGCCTTGGATGATGATGAAGCTGAAGAGGAAACTGAAGAGCTTACAAATCAAGTGCTTGATGAAATCGGTGTCGATATTGCCTCACAGTTATCGTCAGCTCCCAAAGGGAGAATCGCAGCAAAGAATACTGAAAATGTTGGCAGCTCGGGCGTTGATGACCTTGAGAAGCGTTTGGCGGCTCTAAGAAACCCATAA

Protein sequence

>Msa1115280

MNIFTKKPTAKEALRESKREMTNATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEGSRAQMRGIATHTQAMHAHSSVAVGMKGATKAMSAMNKQMEPAKQAKVMQEFQKQSAQMDMTTEMMSDVIDDALDDDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIAAKNTENVGSSGVDDLEKRLAALRNP*