Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063040 | Msa1338620 | 0.882455 | 1.027251e-70 | -8.615850e-47 |
| Msa0719080 | Msa1338620 | 0.856780 | 2.551631e-62 | -8.615850e-47 |
| Msa0719090 | Msa1338620 | 0.851356 | 9.362853e-61 | -8.615850e-47 |
| Msa0719390 | Msa1338620 | 0.839657 | 1.390248e-57 | -8.615850e-47 |
| Msa0789640 | Msa1338620 | 0.843293 | 1.531744e-58 | -8.615850e-47 |
| Msa0213670 | Msa1338620 | 0.823490 | 1.347185e-53 | -8.615850e-47 |
| Msa1305900 | Msa1338620 | 0.842552 | 2.411608e-58 | -8.615850e-47 |
| Msa0988690 | Msa1338620 | 0.809510 | 1.825617e-50 | -8.615850e-47 |
| Msa1077610 | Msa1338620 | 0.800022 | 1.751576e-48 | -8.615850e-47 |
| Msa0319860 | Msa1338620 | 0.855431 | 6.336801e-62 | -8.615850e-47 |
| Msa0500520 | Msa1338620 | 0.816630 | 5.008986e-52 | -8.615850e-47 |
| Msa0500530 | Msa1338620 | 0.802993 | 4.310056e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGGATATGGTTGAGTT+TGG | 0.233721 | tig0002300:+34906 | Msa1338620:CDS |
| TATGGTTGAGTTTGGGGATC+TGG | 0.276601 | tig0002300:+34914 | Msa1338620:CDS |
| CTGCAAAGTGCAAAATGAAT+TGG | 0.361039 | tig0002300:+32198 | Msa1338620:CDS |
| TGTTTGTTAGCAATGGGATA+TGG | 0.369203 | tig0002300:+34896 | Msa1338620:intron |
| AATGGGATATGGTTGAGTTT+GGG | 0.371906 | tig0002300:+34907 | Msa1338620:CDS |
| AAAATAAGTCTACTGTTGAC+TGG | 0.517340 | tig0002300:+32149 | Msa1338620:intron |
| GTCTACTGTTGACTGGAGAA+AGG | 0.533632 | tig0002300:+32156 | Msa1338620:intron |
| ATGGGATATGGTTGAGTTTG+GGG | 0.560484 | tig0002300:+34908 | Msa1338620:CDS |
| ACAATCTGAGCTTAGCAAAG+AGG | 0.576153 | tig0002300:+32227 | Msa1338620:CDS |
| GAAGAAGCAATAGTTCAGCA+AGG | 0.666882 | tig0002300:+34936 | Msa1338620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACAACATATTATTTTATT+GGG | - | tig0002300:32485-32504 | None:intergenic | 10.0% |
| !!! | TTAACAACATATTATTTTAT+TGG | - | tig0002300:32486-32505 | None:intergenic | 10.0% |
| !! | TTATAAAAATAATATTCTTC+TGG | - | tig0002300:33169-33188 | None:intergenic | 10.0% |
| !!! | TATAATAATTTTGAGATTTT+CGG | + | tig0002300:33617-33636 | Msa1338620:intron | 10.0% |
| !! | ATATAATTTACTTTATAAGA+AGG | + | tig0002300:35358-35377 | Msa1338620:intron | 10.0% |
| !! | TATAATTTACTTTATAAGAA+GGG | + | tig0002300:35359-35378 | Msa1338620:intron | 10.0% |
| !! | AAATATACAAAATGAAATCT+GGG | - | tig0002300:32077-32096 | None:intergenic | 15.0% |
| !! | AAAATATACAAAATGAAATC+TGG | - | tig0002300:32078-32097 | None:intergenic | 15.0% |
| !! | CTTAGAAATTTAAAGAAATT+AGG | + | tig0002300:32413-32432 | Msa1338620:intron | 15.0% |
| !!! | ATTTTAACTTTTGTATGATT+TGG | + | tig0002300:32718-32737 | Msa1338620:intron | 15.0% |
| !! | AAAAAATTATCATGTAAAGT+TGG | - | tig0002300:32754-32773 | None:intergenic | 15.0% |
| !!! | TGTTTATCAGTTTTTTTTAT+TGG | + | tig0002300:33326-33345 | Msa1338620:intron | 15.0% |
| !!! | GTTTATCAGTTTTTTTTATT+GGG | + | tig0002300:33327-33346 | Msa1338620:intron | 15.0% |
| !!! | TTTATCAGTTTTTTTTATTG+GGG | + | tig0002300:33328-33347 | Msa1338620:intron | 15.0% |
| !!! | AACAAAAATTTTGATAGAAT+TGG | - | tig0002300:33832-33851 | None:intergenic | 15.0% |
| !! | TTATTTCATATTCAAAAGTT+TGG | + | tig0002300:34130-34149 | Msa1338620:intron | 15.0% |
| !! | AAGAATGAACTTAATTAAAA+TGG | - | tig0002300:34520-34539 | None:intergenic | 15.0% |
| !! | AAAAGAATATTCACAAAATA+AGG | - | tig0002300:34804-34823 | None:intergenic | 15.0% |
| !! | AATGATATGTTAAAGAAATA+AGG | + | tig0002300:35233-35252 | Msa1338620:intron | 15.0% |
| !!! | TGTTTTTTTTTTTTTTTTGC+AGG | + | tig0002300:35999-36018 | Msa1338620:intron | 15.0% |
| !! | TCTAACAATGTATTATTTAT+AGG | + | tig0002300:36127-36146 | Msa1338620:intron | 15.0% |
| !! | CATATGTGTAGATATAAAAT+TGG | + | tig0002300:31943-31962 | Msa1338620:intron | 20.0% |
| !!! | AATGAATAAACAGTTTTTTC+AGG | - | tig0002300:31990-32009 | None:intergenic | 20.0% |
| !!! | AGAGAGCAATAATATTTTTT+TGG | + | tig0002300:32360-32379 | Msa1338620:intron | 20.0% |
| !! | TCTCTAAATTGAAAAGTTTA+AGG | - | tig0002300:32510-32529 | None:intergenic | 20.0% |
| !!! | AGTTTAACTTTTGTTTGATT+TGG | + | tig0002300:32781-32800 | Msa1338620:intron | 20.0% |
| !!! | AAGAAATTTTCATGTAAAGT+TGG | - | tig0002300:32895-32914 | None:intergenic | 20.0% |
| !! | AAAGAAATTCAATTTCTCTT+TGG | + | tig0002300:33202-33221 | Msa1338620:intron | 20.0% |
| !!! | TTATCAGTTTTTTTTATTGG+GGG | + | tig0002300:33329-33348 | Msa1338620:intron | 20.0% |
| !! | AATATTCTTGCATATGTTAA+GGG | + | tig0002300:33372-33391 | Msa1338620:intron | 20.0% |
| !! | AGAGTAAAAAGAATTAAAGT+GGG | - | tig0002300:33707-33726 | None:intergenic | 20.0% |
| !! | AAGAGTAAAAAGAATTAAAG+TGG | - | tig0002300:33708-33727 | None:intergenic | 20.0% |
| !! | ATCTTTAATGGAAATATGAT+TGG | - | tig0002300:33917-33936 | None:intergenic | 20.0% |
| !! | TAGAACTTATAAAGAACTTA+AGG | - | tig0002300:34198-34217 | None:intergenic | 20.0% |
| !! | ATGAACTTAATTAAAATGGA+GGG | - | tig0002300:34516-34535 | None:intergenic | 20.0% |
| !! | AATGAACTTAATTAAAATGG+AGG | - | tig0002300:34517-34536 | None:intergenic | 20.0% |
| !! | AATATGTTGAAATAATGCAT+AGG | + | tig0002300:35113-35132 | Msa1338620:intron | 20.0% |
| !! | ATATGTTGAAATAATGCATA+GGG | + | tig0002300:35114-35133 | Msa1338620:intron | 20.0% |
| !! | TAAGTTATAACATCTCAATA+AGG | - | tig0002300:35316-35335 | None:intergenic | 20.0% |
| !! | AATGAATACCATAAAATGAT+GGG | + | tig0002300:35416-35435 | Msa1338620:intron | 20.0% |
| !!! | TTTTAGCTTTAGTTATCATT+TGG | + | tig0002300:35464-35483 | Msa1338620:intron | 20.0% |
| !!! | AGCTTTAAACTTAATTTTTG+TGG | + | tig0002300:35583-35602 | Msa1338620:intron | 20.0% |
| !! | CATTAAATCATACATAAAGT+TGG | - | tig0002300:35662-35681 | None:intergenic | 20.0% |
| !! | GAAAAATAAATGTAAGAAAC+AGG | - | tig0002300:35796-35815 | None:intergenic | 20.0% |
| !! | AATCCACTACAATTAAAAAA+TGG | + | tig0002300:35922-35941 | Msa1338620:intron | 20.0% |
| !!! | CAACAATGTATATATGTTTT+AGG | + | tig0002300:35958-35977 | Msa1338620:intron | 20.0% |
| ! | CCAAAAACAGAAGAAAAAAA+AGG | - | tig0002300:31758-31777 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTCTTCTGTTTT+TGG | + | tig0002300:31755-31774 | Msa1338620:intron | 25.0% |
| !!! | TTTTGGTGTTGATATATTGA+AGG | + | tig0002300:31772-31791 | Msa1338620:intron | 25.0% |
| !!! | TATCATGTTTTTTCTTGCTT+AGG | - | tig0002300:31876-31895 | None:intergenic | 25.0% |
| !! | GTTCTTGTTGAAAATGTTTT+TGG | + | tig0002300:32299-32318 | Msa1338620:intron | 25.0% |
| ! | AGTAAATGCTAAAGAAAACA+TGG | - | tig0002300:32617-32636 | None:intergenic | 25.0% |
| ! | AAACATGACAATTAAGAATG+CGG | - | tig0002300:33006-33025 | None:intergenic | 25.0% |
| ! | TCTGATAAACAAATGAAAAG+AGG | + | tig0002300:33093-33112 | Msa1338620:intron | 25.0% |
| !!! | TTTAAAGTTTTGAAGCACAT+AGG | - | tig0002300:33245-33264 | None:intergenic | 25.0% |
| ! | GAATATTCTTGCATATGTTA+AGG | + | tig0002300:33371-33390 | Msa1338620:intron | 25.0% |
| ! | TTCTTGCAAATAACTCTAAA+TGG | + | tig0002300:33439-33458 | Msa1338620:intron | 25.0% |
| ! | ACATTTAAAGACGGTTATAT+TGG | - | tig0002300:33659-33678 | None:intergenic | 25.0% |
| ! | TATAACCGTCTTTAAATGTT+TGG | + | tig0002300:33660-33679 | Msa1338620:intron | 25.0% |
| ! | ACAAACCAAACATTTAAAGA+CGG | - | tig0002300:33668-33687 | None:intergenic | 25.0% |
| !! | TATTACCTTGATTTTGTAAG+TGG | - | tig0002300:33745-33764 | None:intergenic | 25.0% |
| ! | CATAAGATAATGCAAAAAAG+AGG | + | tig0002300:33803-33822 | Msa1338620:intron | 25.0% |
| !! | AAAGTTTGGTAATATCTGTT+AGG | + | tig0002300:34144-34163 | Msa1338620:intron | 25.0% |
| ! | CATACTCATAGACTAATTTA+TGG | + | tig0002300:34245-34264 | Msa1338620:intron | 25.0% |
| ! | TTGAGAGTTTCTTCTAAATT+AGG | + | tig0002300:34332-34351 | Msa1338620:intron | 25.0% |
| !! | GGAACTTTTTATATTAGTGT+TGG | - | tig0002300:34662-34681 | None:intergenic | 25.0% |
| !!! | TTTTCTTTGTTTGTTAGCAA+TGG | + | tig0002300:34889-34908 | Msa1338620:intron | 25.0% |
| !! | TTTCTTTGTTTGTTAGCAAT+GGG | + | tig0002300:34890-34909 | Msa1338620:intron | 25.0% |
| ! | TTACAGGTATTAGATAGATA+AGG | - | tig0002300:35004-35023 | None:intergenic | 25.0% |
| !!! | AAAGAGGTATTAGATAGATA+AGG | - | tig0002300:35032-35051 | None:intergenic | 25.0% |
| ! | TTATCTAACAACAGAAAAAG+AGG | - | tig0002300:35048-35067 | None:intergenic | 25.0% |
| ! | TATGTTGAAATAATGCATAG+GGG | + | tig0002300:35115-35134 | Msa1338620:intron | 25.0% |
| ! | ATATGAAAAAAGACCTTCAT+AGG | - | tig0002300:35152-35171 | None:intergenic | 25.0% |
| ! | AAATTTCTAAGTTGTATAGC+AGG | - | tig0002300:35176-35195 | None:intergenic | 25.0% |
| ! | CAATGAATACCATAAAATGA+TGG | + | tig0002300:35415-35434 | Msa1338620:intron | 25.0% |
| ! | AATAAATTATCATGCAAAGC+TGG | - | tig0002300:35500-35519 | None:intergenic | 25.0% |
| ! | TACCATAAAATGATGTATAG+CGG | + | tig0002300:35684-35703 | Msa1338620:intron | 25.0% |
| !!! | CTTACTTTTCACATATACAA+AGG | - | tig0002300:35724-35743 | None:intergenic | 25.0% |
| !!! | CATCCATTTTTTAATTGTAG+TGG | - | tig0002300:35928-35947 | None:intergenic | 25.0% |
| ! | CACTACAATTAAAAAATGGA+TGG | + | tig0002300:35926-35945 | Msa1338620:intron | 25.0% |
| ! | ACTAAAGTAGATAAGAACAA+TGG | + | tig0002300:36093-36112 | Msa1338620:intron | 25.0% |
| ! | TATTATTTATAGGAGTTACC+CGG | + | tig0002300:36137-36156 | Msa1338620:intron | 25.0% |
| ! | ATTTCACTTATTAGAGTAGA+AGG | - | tig0002300:36372-36391 | None:intergenic | 25.0% |
| TGCAAATATATCTTCTGTAG+TGG | + | tig0002300:31639-31658 | Msa1338620:intron | 30.0% | |
| AAAATAAGTCTACTGTTGAC+TGG | + | tig0002300:32149-32168 | Msa1338620:intron | 30.0% | |
| ! | GACAATTGTGATAATGATGT+TGG | + | tig0002300:32547-32566 | Msa1338620:intron | 30.0% |
| ATATCATCATCATGCAAAGT+TGG | - | tig0002300:32681-32700 | None:intergenic | 30.0% | |
| CTGATAGCATTGTTTATTCT+TGG | - | tig0002300:33472-33491 | None:intergenic | 30.0% | |
| AACGAGTAAATATGGTATGT+TGG | - | tig0002300:33776-33795 | None:intergenic | 30.0% | |
| GCATTGAAAACGAGTAAATA+TGG | - | tig0002300:33784-33803 | None:intergenic | 30.0% | |
| ! | TTTGTTGTATATTCACATGC+TGG | + | tig0002300:33846-33865 | Msa1338620:intron | 30.0% |
| ! | ACTTGCGTTTTCATCTTTAA+TGG | - | tig0002300:33929-33948 | None:intergenic | 30.0% |
| !! | ATCTAAACTTGTTAGAGTGT+AGG | + | tig0002300:34030-34049 | Msa1338620:intron | 30.0% |
| !! | TCTAAACTTGTTAGAGTGTA+GGG | + | tig0002300:34031-34050 | Msa1338620:intron | 30.0% |
| ! | ATTAGTCTATGAGTATGACT+GGG | - | tig0002300:34242-34261 | None:intergenic | 30.0% |
| ! | AATTAGTCTATGAGTATGAC+TGG | - | tig0002300:34243-34262 | None:intergenic | 30.0% |
| ! | ATGTAAGCATTCCTTTTAAG+AGG | - | tig0002300:34279-34298 | None:intergenic | 30.0% |
| CACATCTATTAGAAATGGTT+AGG | - | tig0002300:34575-34594 | None:intergenic | 30.0% | |
| ACCATTTCTAATAGATGTGA+TGG | + | tig0002300:34576-34595 | Msa1338620:intron | 30.0% | |
| CCATTTCTAATAGATGTGAT+GGG | + | tig0002300:34577-34596 | Msa1338620:intron | 30.0% | |
| CATTTCTAATAGATGTGATG+GGG | + | tig0002300:34578-34597 | Msa1338620:intron | 30.0% | |
| !! | GCAAAAGTCTTATTAGCATA+GGG | + | tig0002300:34600-34619 | Msa1338620:intron | 30.0% |
| !! | CAAAAGTCTTATTAGCATAG+GGG | + | tig0002300:34601-34620 | Msa1338620:intron | 30.0% |
| ACTATACATCAAGCTTGATA+AGG | - | tig0002300:34762-34781 | None:intergenic | 30.0% | |
| GATAGATAAGGAAAACTTAC+AGG | - | tig0002300:34992-35011 | None:intergenic | 30.0% | |
| GATAGATAAGGAAAACTTAC+AGG | - | tig0002300:34992-35011 | None:intergenic | 30.0% | |
| AACCTCAATGCATTTAGAAA+GGG | - | tig0002300:35081-35100 | None:intergenic | 30.0% | |
| AAAAAGACCTTCATAGGAAA+AGG | - | tig0002300:35146-35165 | None:intergenic | 30.0% | |
| ! | CTTTTTGACCCATCATTTTA+TGG | - | tig0002300:35427-35446 | None:intergenic | 30.0% |
| ACCATAAAATGATGTATAGC+GGG | + | tig0002300:35685-35704 | Msa1338620:intron | 30.0% | |
| TGAAAAGTAAGAGAATGAAG+AGG | + | tig0002300:35733-35752 | Msa1338620:intron | 30.0% | |
| TAGTAGAGTTATTACAAGAG+AGG | - | tig0002300:35832-35851 | None:intergenic | 30.0% | |
| TTGCTTGAGTGATATAAGAT+TGG | - | tig0002300:36048-36067 | None:intergenic | 30.0% | |
| AACCTTGACACAATACATCA+GGG | - | tig0002300:31611-31630 | None:intergenic | 35.0% | |
| ! | CAATTCATTTTGCACTTTGC+AGG | - | tig0002300:32200-32219 | None:intergenic | 35.0% |
| CTGCAAAGTGCAAAATGAAT+TGG | + | tig0002300:32198-32217 | Msa1338620:CDS | 35.0% | |
| AGCTTAGCAAAGAGGTAAAA+AGG | + | tig0002300:32235-32254 | Msa1338620:intron | 35.0% | |
| GCGACTTGTGAAAATGTAAA+TGG | + | tig0002300:32443-32462 | Msa1338620:intron | 35.0% | |
| AACTTTGCTTGCCAATATCT+TGG | + | tig0002300:33523-33542 | Msa1338620:intron | 35.0% | |
| ACTTTGCTTGCCAATATCTT+GGG | + | tig0002300:33524-33543 | Msa1338620:intron | 35.0% | |
| TCAACTCAAACCCAAGATAT+TGG | - | tig0002300:33537-33556 | None:intergenic | 35.0% | |
| TAGCACCACTTACAAAATCA+AGG | + | tig0002300:33737-33756 | Msa1338620:intron | 35.0% | |
| TGGTAGTTTAGCCTCTTAAA+AGG | + | tig0002300:34265-34284 | Msa1338620:intron | 35.0% | |
| !!! | CTGATTGCTCTTGTTTTTTG+TGG | + | tig0002300:34400-34419 | Msa1338620:intron | 35.0% |
| CCCATCACATCTATTAGAAA+TGG | - | tig0002300:34580-34599 | None:intergenic | 35.0% | |
| !! | GGCAAAAGTCTTATTAGCAT+AGG | + | tig0002300:34599-34618 | Msa1338620:intron | 35.0% |
| TCCTGTGACAATTTGCATAA+GGG | - | tig0002300:34730-34749 | None:intergenic | 35.0% | |
| ATCCTGTGACAATTTGCATA+AGG | - | tig0002300:34731-34750 | None:intergenic | 35.0% | |
| ATGCAAATTGTCACAGGATA+AGG | + | tig0002300:34732-34751 | Msa1338620:intron | 35.0% | |
| ! | TGTTTGTTAGCAATGGGATA+TGG | + | tig0002300:34896-34915 | Msa1338620:intron | 35.0% |
| AATGGGATATGGTTGAGTTT+GGG | + | tig0002300:34907-34926 | Msa1338620:CDS | 35.0% | |
| TCAATGCATTTAGAAAGGGT+TGG | - | tig0002300:35077-35096 | None:intergenic | 35.0% | |
| AACCCTTTCTAAATGCATTG+AGG | + | tig0002300:35076-35095 | Msa1338620:intron | 35.0% | |
| CAACCTCAATGCATTTAGAA+AGG | - | tig0002300:35082-35101 | None:intergenic | 35.0% | |
| ! | TCCCGCTATACATCATTTTA+TGG | - | tig0002300:35689-35708 | None:intergenic | 35.0% |
| GAGGTTAAACTGTGTATAGT+TGG | + | tig0002300:35752-35771 | Msa1338620:intron | 35.0% | |
| TAGAGTTATTACAAGAGAGG+TGG | - | tig0002300:35829-35848 | None:intergenic | 35.0% | |
| ! | GAGTATTGTGAAGAAAGAGT+GGG | - | tig0002300:35861-35880 | None:intergenic | 35.0% |
| !! | AGAGTATTGTGAAGAAAGAG+TGG | - | tig0002300:35862-35881 | None:intergenic | 35.0% |
| ATAAGATTGGAAAACATGCG+TGG | - | tig0002300:36035-36054 | None:intergenic | 35.0% | |
| AAGAAAGTTATGAGCCTTTC+CGG | - | tig0002300:36159-36178 | None:intergenic | 35.0% | |
| TTAGAACTCAGCAGATTTGA+TGG | - | tig0002300:36280-36299 | None:intergenic | 35.0% | |
| !! | TCTGCTGAGTTCTAAATTCT+TGG | + | tig0002300:36285-36304 | Msa1338620:intron | 35.0% |
| TACCCTGATGTATTGTGTCA+AGG | + | tig0002300:31606-31625 | Msa1338620:intron | 40.0% | |
| GAACCTTGACACAATACATC+AGG | - | tig0002300:31612-31631 | None:intergenic | 40.0% | |
| CCACACACATTCTACATGAA+GGG | - | tig0002300:31846-31865 | None:intergenic | 40.0% | |
| ACCACACACATTCTACATGA+AGG | - | tig0002300:31847-31866 | None:intergenic | 40.0% | |
| ACAATCTGAGCTTAGCAAAG+AGG | + | tig0002300:32227-32246 | Msa1338620:CDS | 40.0% | |
| TTTGCAAGTGATCTCACTGT+TGG | + | tig0002300:32577-32596 | Msa1338620:intron | 40.0% | |
| TGGGGGCAAATAACTCTAAA+TGG | + | tig0002300:33346-33365 | Msa1338620:intron | 40.0% | |
| GTCTCTCATCATAACTCAGT+AGG | - | tig0002300:34453-34472 | None:intergenic | 40.0% | |
| TACAGTAGGTGAATCTAGGT+GGG | - | tig0002300:34486-34505 | None:intergenic | 40.0% | |
| AACGTACAGTAGGTGAATCT+AGG | - | tig0002300:34490-34509 | None:intergenic | 40.0% | |
| ACCCTTATGCAAATTGTCAC+AGG | + | tig0002300:34726-34745 | Msa1338620:intron | 40.0% | |
| CAATGGGATATGGTTGAGTT+TGG | + | tig0002300:34906-34925 | Msa1338620:CDS | 40.0% | |
| ATGGGATATGGTTGAGTTTG+GGG | + | tig0002300:34908-34927 | Msa1338620:CDS | 40.0% | |
| GAAGAAGCAATAGTTCAGCA+AGG | + | tig0002300:34936-34955 | Msa1338620:CDS | 40.0% | |
| ! | GGTTATGCCTTTTCCTATGA+AGG | + | tig0002300:35136-35155 | Msa1338620:intron | 40.0% |
| CTTTCTTCACAATACTCTGC+AGG | + | tig0002300:35864-35883 | Msa1338620:intron | 40.0% | |
| TTTATAGGAGTTACCCGGAA+AGG | + | tig0002300:36142-36161 | Msa1338620:intron | 40.0% | |
| AGAAAGTTATGAGCCTTTCC+GGG | - | tig0002300:36158-36177 | None:intergenic | 40.0% | |
| TATTACAATCTGCACTGTGC+AGG | - | tig0002300:36250-36269 | None:intergenic | 40.0% | |
| CCCTTCATGTAGAATGTGTG+TGG | + | tig0002300:31843-31862 | Msa1338620:intron | 45.0% | |
| ! | GTCTACTGTTGACTGGAGAA+AGG | + | tig0002300:32156-32175 | Msa1338620:intron | 45.0% |
| ACAGTAGGTGAATCTAGGTG+GGG | - | tig0002300:34485-34504 | None:intergenic | 45.0% | |
| GTACAGTAGGTGAATCTAGG+TGG | - | tig0002300:34487-34506 | None:intergenic | 45.0% | |
| TGGAGGGAAAAACGTACAGT+AGG | - | tig0002300:34500-34519 | None:intergenic | 45.0% | |
| TATGGTTGAGTTTGGGGATC+TGG | + | tig0002300:34914-34933 | Msa1338620:CDS | 45.0% | |
| AGATTGGAAAACATGCGTGG+AGG | - | tig0002300:36032-36051 | None:intergenic | 45.0% | |
| TGCAGGCTATCTCTTGATAG+AGG | - | tig0002300:36233-36252 | None:intergenic | 45.0% | |
| ATGCACAGTGCAGTTTACAC+CGG | + | tig0002300:36335-36354 | Msa1338620:intron | 45.0% | |
| ! | GTAGAAGGCTCTGATTTGAC+CGG | - | tig0002300:36357-36376 | None:intergenic | 45.0% |
| !!! | TTATTTTTTTATAACAAATT+AGG | - | tig0002300:33124-33143 | None:intergenic | 5.0% |
| !!! | TAGAAATATTATTTAAAATT+AGG | - | tig0002300:34683-34702 | None:intergenic | 5.0% |
| !!! | TTTAAATAATATTTCTAATT+AGG | + | tig0002300:34686-34705 | Msa1338620:intron | 5.0% |
| TGAATCTAGGTGGGGGAAGT+GGG | - | tig0002300:34477-34496 | None:intergenic | 50.0% | |
| CAGTAGGTGAATCTAGGTGG+GGG | - | tig0002300:34484-34503 | None:intergenic | 50.0% | |
| AACTCAGTAGGTCGCTGCTC+TGG | - | tig0002300:34441-34460 | None:intergenic | 55.0% | |
| GTGAATCTAGGTGGGGGAAG+TGG | - | tig0002300:34478-34497 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0002300 | gene | 31570 | 36459 | 31570 | ID=Msa1338620;Name=Msa1338620 |
| tig0002300 | mRNA | 31570 | 36459 | 31570 | ID=Msa1338620-mRNA-1;Parent=Msa1338620;Name=Msa1338620-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0.2|0.2|1|1|5|0|66 |
| tig0002300 | exon | 31570 | 31575 | 31570 | ID=Msa1338620-mRNA-1:exon:1724;Parent=Msa1338620-mRNA-1 |
| tig0002300 | exon | 32157 | 32248 | 32157 | ID=Msa1338620-mRNA-1:exon:1725;Parent=Msa1338620-mRNA-1 |
| tig0002300 | exon | 33393 | 33399 | 33393 | ID=Msa1338620-mRNA-1:exon:1726;Parent=Msa1338620-mRNA-1 |
| tig0002300 | exon | 34906 | 34991 | 34906 | ID=Msa1338620-mRNA-1:exon:1727;Parent=Msa1338620-mRNA-1 |
| tig0002300 | exon | 36450 | 36459 | 36450 | ID=Msa1338620-mRNA-1:exon:1728;Parent=Msa1338620-mRNA-1 |
| tig0002300 | CDS | 31570 | 31575 | 31570 | ID=Msa1338620-mRNA-1:cds;Parent=Msa1338620-mRNA-1 |
| tig0002300 | CDS | 32157 | 32248 | 32157 | ID=Msa1338620-mRNA-1:cds;Parent=Msa1338620-mRNA-1 |
| tig0002300 | CDS | 33393 | 33399 | 33393 | ID=Msa1338620-mRNA-1:cds;Parent=Msa1338620-mRNA-1 |
| tig0002300 | CDS | 34906 | 34991 | 34906 | ID=Msa1338620-mRNA-1:cds;Parent=Msa1338620-mRNA-1 |
| tig0002300 | CDS | 36450 | 36459 | 36450 | ID=Msa1338620-mRNA-1:cds;Parent=Msa1338620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
