Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303010 | XP_003597525.1 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 1.74e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303010 | sp|Q9SID1|BBX25_ARATH | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.91e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303010 | G7IHV4 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 8.31e-178 | 497 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0303010 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074140 | Msa0303010 | 0.835029 | 2.128260e-56 | -8.615850e-47 |
| Msa0074180 | Msa0303010 | 0.837557 | 4.844192e-57 | -8.615850e-47 |
| Msa0116590 | Msa0303010 | 0.801835 | 7.466238e-49 | -8.615850e-47 |
| Msa0223780 | Msa0303010 | 0.857100 | 2.054488e-62 | -8.615850e-47 |
| Msa0264960 | Msa0303010 | 0.999742 | 0.000000e+00 | -8.615850e-47 |
| Msa0301260 | Msa0303010 | -0.840095 | 1.069023e-57 | -8.615850e-47 |
| Msa0303010 | Msa0350070 | 0.925366 | 2.023956e-90 | -8.615850e-47 |
| Msa0303010 | Msa0396640 | 0.924661 | 5.223881e-90 | -8.615850e-47 |
| Msa0303010 | Msa0402510 | 0.817913 | 2.576140e-52 | -8.615850e-47 |
| Msa0303010 | Msa0415950 | 0.812752 | 3.619919e-51 | -8.615850e-47 |
| Msa0303010 | Msa0444170 | 0.915952 | 3.191324e-85 | -8.615850e-47 |
| Msa0303010 | Msa0448980 | 0.852521 | 4.371577e-61 | -8.615850e-47 |
| Msa0303010 | Msa0449880 | 0.804636 | 1.964406e-49 | -8.615850e-47 |
| Msa0303010 | Msa0480250 | 0.812363 | 4.403424e-51 | -8.615850e-47 |
| Msa0303010 | Msa0491730 | 0.919330 | 5.154530e-87 | -8.615850e-47 |
| Msa0303010 | Msa0497160 | 0.820512 | 6.595453e-53 | -8.615850e-47 |
| Msa0303010 | Msa0501930 | 0.809079 | 2.259565e-50 | -8.615850e-47 |
| Msa0303010 | Msa0501940 | 0.803190 | 3.923678e-49 | -8.615850e-47 |
| Msa0303010 | Msa0503040 | 0.834171 | 3.497605e-56 | -8.615850e-47 |
| Msa0303010 | Msa0575960 | 0.820282 | 7.447748e-53 | -8.615850e-47 |
| Msa0303010 | Msa0664210 | 0.812609 | 3.890426e-51 | -8.615850e-47 |
| Msa0303010 | Msa0664270 | 0.804575 | 2.023030e-49 | -8.615850e-47 |
| Msa0303010 | Msa0689940 | 0.814784 | 1.291594e-51 | -8.615850e-47 |
| Msa0303010 | Msa0792480 | 0.800912 | 1.153425e-48 | -8.615850e-47 |
| Msa0303010 | Msa0896380 | 0.806141 | 9.498434e-50 | -8.615850e-47 |
| Msa0303010 | Msa0961580 | 0.805038 | 1.618683e-49 | -8.615850e-47 |
| Msa0303010 | Msa1085570 | 0.805229 | 1.476486e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303010 | MtrunA17_Chr2g0329511 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 0.0 | 497 |
| Msa0303010 | MtrunA17_Chr4g0033641 | 70.082 | 244 | 68 | 3 | 1 | 243 | 1 | 240 | 1.61e-123 | 350 |
| Msa0303010 | MtrunA17_Chr2g0314671 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.28e-42 | 144 |
| Msa0303010 | MtrunA17_Chr1g0155811 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 8.62e-37 | 130 |
| Msa0303010 | MtrunA17_Chr3g0142221 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 9.13e-35 | 124 |
| Msa0303010 | MtrunA17_Chr3g0145061 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 6.88e-34 | 122 |
| Msa0303010 | MtrunA17_Chr4g0035651 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.30e-32 | 118 |
| Msa0303010 | MtrunA17_Chr5g0405151 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 2.85e-23 | 93.2 |
| Msa0303010 | MtrunA17_Chr3g0136701 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.86e-17 | 79.7 |
| Msa0303010 | MtrunA17_Chr7g0220721 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 7.41e-17 | 79.0 |
| Msa0303010 | MtrunA17_Chr7g0220721 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 3.46e-11 | 62.4 |
| Msa0303010 | MtrunA17_Chr1g0150471 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 2.61e-16 | 76.6 |
| Msa0303010 | MtrunA17_Chr4g0072871 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 2.94e-15 | 74.3 |
| Msa0303010 | MtrunA17_Chr7g0268691 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 3.56e-13 | 68.2 |
| Msa0303010 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 6.27e-12 | 64.7 |
| Msa0303010 | MtrunA17_Chr3g0120711 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 5.26e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303010 | AT2G31380.1 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.96e-94 | 276 |
| Msa0303010 | AT1G06040.1 | 57.087 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 9.18e-94 | 276 |
| Msa0303010 | AT1G06040.2 | 62.941 | 170 | 52 | 4 | 1 | 161 | 1 | 168 | 9.52e-68 | 207 |
| Msa0303010 | AT1G78600.1 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.50e-41 | 142 |
| Msa0303010 | AT1G78600.2 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 9.98e-41 | 142 |
| Msa0303010 | AT4G10240.1 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.37e-35 | 124 |
| Msa0303010 | AT1G75540.1 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 4.90e-34 | 125 |
| Msa0303010 | AT4G39070.1 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.68e-30 | 113 |
| Msa0303010 | AT2G21320.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 1.77e-23 | 93.6 |
| Msa0303010 | AT4G38960.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.68e-23 | 92.8 |
| Msa0303010 | AT4G38960.6 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.68e-23 | 92.8 |
| Msa0303010 | AT5G15850.1 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 2.85e-17 | 80.1 |
| Msa0303010 | AT2G24790.1 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.22e-17 | 78.2 |
| Msa0303010 | AT2G24790.2 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.05e-16 | 76.6 |
| Msa0303010 | AT3G02380.1 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.19e-15 | 75.5 |
| Msa0303010 | AT5G24930.1 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.47e-15 | 75.5 |
| Msa0303010 | AT5G15840.1 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 5.86e-15 | 73.6 |
| Msa0303010 | AT5G15840.2 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.03e-15 | 72.8 |
| Msa0303010 | AT2G33500.2 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.17e-12 | 65.9 |
| Msa0303010 | AT1G28050.1 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.21e-12 | 65.9 |
| Msa0303010 | AT2G33500.1 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.30e-12 | 65.9 |
| Msa0303010 | AT2G47890.1 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.50e-11 | 61.6 |
| Msa0303010 | AT2G47890.3 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 7.10e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGGGAATAATTTATT+TGG | 0.153400 | 2_3:-60051536 | Msa0303010:three_prime_UTR |
| ACTTGGCATATGTCACATTT+AGG | 0.154164 | 2_3:+60053424 | None:intergenic |
| GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2_3:+60052561 | None:intergenic |
| TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2_3:-60052461 | Msa0303010:CDS |
| TAGTAAGGCTCGTATCTTTA+TGG | 0.266201 | 2_3:-60051314 | Msa0303010:three_prime_UTR |
| CACGGTTGCAATTTCATGTT+TGG | 0.282058 | 2_3:-60051245 | Msa0303010:three_prime_UTR |
| ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2_3:+60052529 | None:intergenic |
| CTTGGCATATGTCACATTTA+GGG | 0.307139 | 2_3:+60053425 | None:intergenic |
| TGATTTGCAGAAAGGCTTCC+AGG | 0.309803 | 2_3:+60052634 | None:intergenic |
| TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2_3:+60051620 | None:intergenic |
| TTTGTTCTTAAAGTTTCATT+AGG | 0.326962 | 2_3:-60053630 | Msa0303010:five_prime_UTR |
| ATTGTATAATATAATATTCA+TGG | 0.339896 | 2_3:+60053727 | None:intergenic |
| AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2_3:+60051669 | None:intergenic |
| CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2_3:-60051797 | Msa0303010:CDS |
| TATGGTGGGATAGTAATAAT+AGG | 0.368705 | 2_3:-60051296 | Msa0303010:three_prime_UTR |
| TTTGGCGCAGTTAGATTTCA+TGG | 0.374267 | 2_3:+60052579 | None:intergenic |
| TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2_3:-60051572 | Msa0303010:CDS |
| TCAACTCAAAGTATTGTATT+CGG | 0.385669 | 2_3:+60051415 | None:intergenic |
| TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2_3:+60051689 | None:intergenic |
| GCACAGCAAATCATTGTTGC+AGG | 0.405281 | 2_3:+60053553 | None:intergenic |
| TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2_3:-60051789 | Msa0303010:CDS |
| CTAGAATGATACAAATAGTA+AGG | 0.464175 | 2_3:-60051329 | Msa0303010:three_prime_UTR |
| CAAAATATCAACTCAAGTAA+TGG | 0.465158 | 2_3:+60053649 | None:intergenic |
| CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2_3:+60051560 | None:intergenic |
| TATTGTATTCGGAGAGAAGT+AGG | 0.478824 | 2_3:+60051426 | None:intergenic |
| AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2_3:+60051718 | None:intergenic |
| AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2_3:+60052493 | None:intergenic |
| TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2_3:+60052532 | None:intergenic |
| TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2_3:+60051646 | None:intergenic |
| CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2_3:-60052543 | Msa0303010:CDS |
| CACCAGCGCTTCCTTGCGAC+AGG | 0.519290 | 2_3:-60052613 | Msa0303010:CDS |
| AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2_3:+60052626 | None:intergenic |
| TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2_3:-60051784 | Msa0303010:CDS |
| AGTTAGATTTCATGGCCACT+TGG | 0.554538 | 2_3:+60052587 | None:intergenic |
| TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2_3:+60051787 | None:intergenic |
| TACCTGTCGCAAGGAAGCGC+TGG | 0.556206 | 2_3:+60052611 | None:intergenic |
| AGACGACGAACAAACTCACT+TGG | 0.565694 | 2_3:-60052557 | Msa0303010:CDS |
| GACGAATCGATTCATTTACC+TGG | 0.577934 | 2_3:-60052652 | Msa0303010:CDS |
| GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2_3:-60051771 | Msa0303010:CDS |
| ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2_3:-60051770 | Msa0303010:CDS |
| TAAGGCTCGTATCTTTATGG+TGG | 0.583599 | 2_3:-60051311 | Msa0303010:three_prime_UTR |
| AGCTTGCAAGCAAGCATCAG+AGG | 0.588673 | 2_3:-60053477 | Msa0303010:CDS |
| AAGTATGTTTATAAGTTGTG+TGG | 0.591103 | 2_3:-60051393 | Msa0303010:three_prime_UTR |
| TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2_3:-60051735 | Msa0303010:CDS |
| AAGGCTCGTATCTTTATGGT+GGG | 0.611081 | 2_3:-60051310 | Msa0303010:three_prime_UTR |
| AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2_3:+60052463 | None:intergenic |
| GGATGAAGCAAATGATCATG+TGG | 0.623188 | 2_3:-60051551 | Msa0303010:exon |
| TACTCTTAAGAGATTTGACA+CGG | 0.623353 | 2_3:-60051263 | Msa0303010:three_prime_UTR |
| GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2_3:+60051565 | None:intergenic |
| CCACTTGGATACCTGTCGCA+AGG | 0.630313 | 2_3:+60052602 | None:intergenic |
| ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2_3:+60052464 | None:intergenic |
| GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2_3:+60051698 | None:intergenic |
| TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2_3:+60052465 | None:intergenic |
| GATGAAGCAAATGATCATGT+GGG | 0.669991 | 2_3:-60051550 | Msa0303010:exon |
| AGACAGGGCACTCTTCTGTG+AGG | 0.698154 | 2_3:-60052680 | Msa0303010:CDS |
| CCTTGCGACAGGTATCCAAG+TGG | 0.753321 | 2_3:-60052602 | Msa0303010:CDS |
| AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2_3:+60052466 | None:intergenic |
| AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2_3:-60051774 | Msa0303010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATAATATAATATTCA+TGG | + | chr2_3:60051310-60051329 | None:intergenic | 10.0% |
| !! | TATAATAAACTCAAATAAAT+CGG | - | chr2_3:60052190-60052209 | Msa0303010:intron | 10.0% |
| !!! | ACAATTTCAAAATTTTAATT+TGG | + | chr2_3:60053583-60053602 | None:intergenic | 10.0% |
| !!! | TTCATATTTTATTTTTCTCT+TGG | - | chr2_3:60051248-60051267 | Msa0303010:three_prime_UTR | 15.0% |
| !! | AAATTATAAAGTATACTTTC+TGG | - | chr2_3:60051837-60051856 | Msa0303010:intron | 15.0% |
| !! | TTTCTTATCTTAATAAGATT+AGG | - | chr2_3:60051888-60051907 | Msa0303010:intron | 15.0% |
| !!! | AGACAAAAAAACATTTTATA+AGG | + | chr2_3:60052737-60052756 | None:intergenic | 15.0% |
| !! | TTTGTTCTTAAAGTTTCATT+AGG | - | chr2_3:60051404-60051423 | Msa0303010:three_prime_UTR | 20.0% |
| !! | AAAAAACAGAGAGAAAATTA+AGG | + | chr2_3:60051648-60051667 | None:intergenic | 20.0% |
| !! | ACATAATAAGTAACAGTTAT+AGG | + | chr2_3:60052268-60052287 | None:intergenic | 20.0% |
| !!! | TTGCAACTTTATTTCATAAT+TGG | - | chr2_3:60052632-60052651 | Msa0303010:CDS | 20.0% |
| !!! | TTACAAATTTTGTTAGTTCA+TGG | + | chr2_3:60052671-60052690 | None:intergenic | 20.0% |
| !! | TGAAATCGAATATTTAACTA+AGG | + | chr2_3:60052699-60052718 | None:intergenic | 20.0% |
| !!! | TTACAAAACTACATGTTTTT+AGG | + | chr2_3:60052770-60052789 | None:intergenic | 20.0% |
| !!! | TTTTGTTATAATTGAGCTAA+GGG | + | chr2_3:60052946-60052965 | None:intergenic | 20.0% |
| !! | ATCATGTATCATTAGATAAT+AGG | + | chr2_3:60052979-60052998 | None:intergenic | 20.0% |
| !! | TATCTAATGATACATGATTA+AGG | - | chr2_3:60052981-60053000 | Msa0303010:intron | 20.0% |
| !! | ATCTAATGATACATGATTAA+GGG | - | chr2_3:60052982-60053001 | Msa0303010:intron | 20.0% |
| !! | CATTTCTTGTATTTAATCAT+GGG | + | chr2_3:60053154-60053173 | None:intergenic | 20.0% |
| !! | ACATTTCTTGTATTTAATCA+TGG | + | chr2_3:60053155-60053174 | None:intergenic | 20.0% |
| ! | CAAAATATCAACTCAAGTAA+TGG | + | chr2_3:60051388-60051407 | None:intergenic | 25.0% |
| !! | TAAGGTGCTAATTAATTACT+TGG | + | chr2_3:60051630-60051649 | None:intergenic | 25.0% |
| ! | TTCATACATGAGTAACTAAT+AGG | - | chr2_3:60051737-60051756 | Msa0303010:CDS | 25.0% |
| !! | TAACCTCTTTTAAACACTTT+AGG | - | chr2_3:60052004-60052023 | Msa0303010:intron | 25.0% |
| !! | AATCCTAAAGTGTTTAAAAG+AGG | + | chr2_3:60052010-60052029 | None:intergenic | 25.0% |
| ! | ACTATTTACATAAGTCATTC+TGG | - | chr2_3:60052120-60052139 | Msa0303010:intron | 25.0% |
| ! | AATTTGTACGAACTAAAATG+TGG | - | chr2_3:60052788-60052807 | Msa0303010:intron | 25.0% |
| !!! | CTTTTGTTATAATTGAGCTA+AGG | + | chr2_3:60052947-60052966 | None:intergenic | 25.0% |
| ! | CTTAGCTCAATTATAACAAA+AGG | - | chr2_3:60052945-60052964 | Msa0303010:intron | 25.0% |
| ! | TTAATCATGGGAAAATACTT+GGG | + | chr2_3:60053142-60053161 | None:intergenic | 25.0% |
| ! | TTTAATCATGGGAAAATACT+TGG | + | chr2_3:60053143-60053162 | None:intergenic | 25.0% |
| ! | TGAAGCACAATAAGAAAAAA+AGG | + | chr2_3:60053219-60053238 | None:intergenic | 25.0% |
| ! | TCATGTGGGAATAATTTATT+TGG | - | chr2_3:60053498-60053517 | Msa0303010:CDS | 25.0% |
| !!! | TCAACTCAAAGTATTGTATT+CGG | + | chr2_3:60053622-60053641 | None:intergenic | 25.0% |
| ! | AAGTATGTTTATAAGTTGTG+TGG | - | chr2_3:60053641-60053660 | Msa0303010:five_prime_UTR | 25.0% |
| ! | CTAGAATGATACAAATAGTA+AGG | - | chr2_3:60053705-60053724 | Msa0303010:five_prime_UTR | 25.0% |
| ! | CAAACAACATTGTCCATTTT+TGG | - | chr2_3:60051331-60051350 | Msa0303010:three_prime_UTR | 30.0% |
| !! | GAAGTGTTTTAAGCCAAAAA+TGG | + | chr2_3:60051347-60051366 | None:intergenic | 30.0% |
| AAAGTTAAGACAACATACCT+TGG | + | chr2_3:60051767-60051786 | None:intergenic | 30.0% | |
| ! | TCATATTTTGTGTTGAAGAC+AGG | - | chr2_3:60052338-60052357 | Msa0303010:intron | 30.0% |
| ! | CATATTTTGTGTTGAAGACA+GGG | - | chr2_3:60052339-60052358 | Msa0303010:intron | 30.0% |
| ATAAAACAACAAAGACAGCT+AGG | - | chr2_3:60052849-60052868 | Msa0303010:intron | 30.0% | |
| TAAAACAACAAAGACAGCTA+GGG | - | chr2_3:60052850-60052869 | Msa0303010:intron | 30.0% | |
| ! | TTTTCTTATTGTGCTTCAGA+AGG | - | chr2_3:60053221-60053240 | Msa0303010:intron | 30.0% |
| AGTTTCTGTGTGATGAATAA+TGG | + | chr2_3:60053368-60053387 | None:intergenic | 30.0% | |
| ! | TATGGTGGGATAGTAATAAT+AGG | - | chr2_3:60053738-60053757 | Msa0303010:five_prime_UTR | 30.0% |
| TACTCTTAAGAGATTTGACA+CGG | - | chr2_3:60053771-60053790 | Msa0303010:five_prime_UTR | 30.0% | |
| CTTGGCATATGTCACATTTA+GGG | + | chr2_3:60051612-60051631 | None:intergenic | 35.0% | |
| ACTTGGCATATGTCACATTT+AGG | + | chr2_3:60051613-60051632 | None:intergenic | 35.0% | |
| AGTAACTAATAGGTCATCCA+AGG | - | chr2_3:60051747-60051766 | Msa0303010:CDS | 35.0% | |
| AAGTAGCATGTATGAGTTAG+TGG | - | chr2_3:60051922-60051941 | Msa0303010:intron | 35.0% | |
| AGTAGCATGTATGAGTTAGT+GGG | - | chr2_3:60051923-60051942 | Msa0303010:intron | 35.0% | |
| TGTATGAGTTAGTGGGAATT+AGG | - | chr2_3:60051930-60051949 | Msa0303010:intron | 35.0% | |
| !! | CAATTGTCTAAGAGCATCTT+TGG | + | chr2_3:60052217-60052236 | None:intergenic | 35.0% |
| ACTTGATGTGTATTCCTCTT+AGG | + | chr2_3:60052508-60052527 | None:intergenic | 35.0% | |
| ATTAAATCTGGGTCACACAA+AGG | + | chr2_3:60053099-60053118 | None:intergenic | 35.0% | |
| TTTGTTAGACATGTGTGACT+TGG | + | chr2_3:60053391-60053410 | None:intergenic | 35.0% | |
| TCACGTATGAGTTCAATTCT+AGG | + | chr2_3:60053417-60053436 | None:intergenic | 35.0% | |
| GATGAAGCAAATGATCATGT+GGG | - | chr2_3:60053484-60053503 | Msa0303010:CDS | 35.0% | |
| TATTGTATTCGGAGAGAAGT+AGG | + | chr2_3:60053611-60053630 | None:intergenic | 35.0% | |
| TAGTAAGGCTCGTATCTTTA+TGG | - | chr2_3:60053720-60053739 | Msa0303010:five_prime_UTR | 35.0% | |
| GTACATACAGGTGAAGCAAA+AGG | + | chr2_3:60052299-60052318 | None:intergenic | 40.0% | |
| CTTCACCTGTATGTACAAAC+AGG | - | chr2_3:60052303-60052322 | Msa0303010:intron | 40.0% | |
| CTTGTCCTGTTTGTACATAC+AGG | + | chr2_3:60052311-60052330 | None:intergenic | 40.0% | |
| ! | GACGAATCGATTCATTTACC+TGG | - | chr2_3:60052382-60052401 | Msa0303010:intron | 40.0% |
| AGTTAGATTTCATGGCCACT+TGG | + | chr2_3:60052450-60052469 | None:intergenic | 40.0% | |
| TTTGGCGCAGTTAGATTTCA+TGG | + | chr2_3:60052458-60052477 | None:intergenic | 40.0% | |
| TGATGTGTATTCCTCTTAGG+TGG | + | chr2_3:60052505-60052524 | None:intergenic | 40.0% | |
| ATAAGTCATCAACACCCCAA+GGG | + | chr2_3:60052573-60052592 | None:intergenic | 40.0% | |
| AATAAGTCATCAACACCCCA+AGG | + | chr2_3:60052574-60052593 | None:intergenic | 40.0% | |
| !! | TTGGGGTGTTGATGACTTAT+TGG | - | chr2_3:60052573-60052592 | Msa0303010:CDS | 40.0% |
| !! | ACATGATTAAGGGAAGCACT+TGG | - | chr2_3:60052992-60053011 | Msa0303010:intron | 40.0% |
| !! | CATGATTAAGGGAAGCACTT+GGG | - | chr2_3:60052993-60053012 | Msa0303010:intron | 40.0% |
| GTGGCTCAGATTTAATGTCA+CGG | + | chr2_3:60053032-60053051 | None:intergenic | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | - | chr2_3:60053103-60053122 | Msa0303010:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr2_3:60053025-60053044 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr2_3:60053024-60053043 | None:intergenic | 40.0% | |
| CATTTGCTTCATCCAAGATC+AGG | + | chr2_3:60053477-60053496 | None:intergenic | 40.0% | |
| GGATGAAGCAAATGATCATG+TGG | - | chr2_3:60053483-60053502 | Msa0303010:CDS | 40.0% | |
| TAAGGCTCGTATCTTTATGG+TGG | - | chr2_3:60053723-60053742 | Msa0303010:five_prime_UTR | 40.0% | |
| AAGGCTCGTATCTTTATGGT+GGG | - | chr2_3:60053724-60053743 | Msa0303010:five_prime_UTR | 40.0% | |
| CACGGTTGCAATTTCATGTT+TGG | - | chr2_3:60053789-60053808 | Msa0303010:five_prime_UTR | 40.0% | |
| GCACAGCAAATCATTGTTGC+AGG | + | chr2_3:60051484-60051503 | None:intergenic | 45.0% | |
| ! | CTTTCTGGAGATGTAGTGTG+AGG | - | chr2_3:60051852-60051871 | Msa0303010:intron | 45.0% |
| ! | TGATTTGCAGAAAGGCTTCC+AGG | + | chr2_3:60052403-60052422 | None:intergenic | 45.0% |
| ! | GTGAGTTTGTTCGTCGTCTT+TGG | + | chr2_3:60052476-60052495 | None:intergenic | 45.0% |
| AGACGACGAACAAACTCACT+TGG | - | chr2_3:60052477-60052496 | Msa0303010:CDS | 45.0% | |
| TAAGTCATCAACACCCCAAG+GGG | + | chr2_3:60052572-60052591 | None:intergenic | 45.0% | |
| ACACATTGCCACACAACATC+TGG | - | chr2_3:60053057-60053076 | Msa0303010:intron | 45.0% | |
| CACATTGCCACACAACATCT+GGG | - | chr2_3:60053058-60053077 | Msa0303010:intron | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | + | chr2_3:60053084-60053103 | None:intergenic | 45.0% |
| CAGAAGGATTCCATGCAGTT+TGG | - | chr2_3:60053237-60053256 | Msa0303010:intron | 45.0% | |
| TTCCATGCAGTTTGGAGAGA+TGG | - | chr2_3:60053245-60053264 | Msa0303010:intron | 45.0% | |
| TTCCATCTCTCCAAACTGCA+TGG | + | chr2_3:60053250-60053269 | None:intergenic | 45.0% | |
| TGCAGTTTGGAGAGATGGAA+TGG | - | chr2_3:60053250-60053269 | Msa0303010:intron | 45.0% | |
| AGAGATGGAATGGTTCACAG+AGG | - | chr2_3:60053260-60053279 | Msa0303010:intron | 45.0% | |
| ATGGAATGGTTCACAGAGGA+GGG | - | chr2_3:60053264-60053283 | Msa0303010:intron | 45.0% | |
| ! | TTCACAGAGGAGGGTCTTTT+TGG | - | chr2_3:60053273-60053292 | Msa0303010:intron | 45.0% |
| TGACTTCACTCAAGAAGCCA+TGG | - | chr2_3:60053299-60053318 | Msa0303010:intron | 45.0% | |
| TGGTTGCTAGCATGAGTTAC+TGG | + | chr2_3:60053348-60053367 | None:intergenic | 45.0% | |
| TACTTTACCGTGCCTGATCT+TGG | - | chr2_3:60053462-60053481 | Msa0303010:CDS | 45.0% | |
| AGCTTGCAAGCAAGCATCAG+AGG | - | chr2_3:60051557-60051576 | Msa0303010:exon | 50.0% | |
| !! | AGCGCTGGTGATTTGCAGAA+AGG | + | chr2_3:60052411-60052430 | None:intergenic | 50.0% |
| CTCACTTGGAACCACCTAAG+AGG | - | chr2_3:60052491-60052510 | Msa0303010:CDS | 50.0% | |
| ! | AAGTCAGGCACTTGCTGAGA+AGG | + | chr2_3:60052544-60052563 | None:intergenic | 50.0% |
| AAGTCATCAACACCCCAAGG+GGG | + | chr2_3:60052571-60052590 | None:intergenic | 50.0% | |
| GTGTGGCAATGTGTGTTGTG+TGG | + | chr2_3:60053051-60053070 | None:intergenic | 50.0% | |
| GATGGAATGGTTCACAGAGG+AGG | - | chr2_3:60053263-60053282 | Msa0303010:intron | 50.0% | |
| GCATGAGTTACTGGAAGCTG+AGG | + | chr2_3:60053339-60053358 | None:intergenic | 50.0% | |
| GCTTCATCCAAGATCAGGCA+CGG | + | chr2_3:60053472-60053491 | None:intergenic | 50.0% | |
| ! | AGACAGGGCACTCTTCTGTG+AGG | - | chr2_3:60052354-60052373 | Msa0303010:intron | 55.0% |
| CCACTTGGATACCTGTCGCA+AGG | + | chr2_3:60052435-60052454 | None:intergenic | 55.0% | |
| CCTTGCGACAGGTATCCAAG+TGG | - | chr2_3:60052432-60052451 | Msa0303010:CDS | 55.0% | |
| TGCCTGACTTTACACCCCCT+TGG | - | chr2_3:60052554-60052573 | Msa0303010:CDS | 55.0% | |
| GCCTGACTTTACACCCCCTT+GGG | - | chr2_3:60052555-60052574 | Msa0303010:CDS | 55.0% | |
| CCTGACTTTACACCCCCTTG+GGG | - | chr2_3:60052556-60052575 | Msa0303010:CDS | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | + | chr2_3:60053068-60053087 | None:intergenic | 55.0% | |
| AGGAACTTCAGCTGCAGCCA+TGG | + | chr2_3:60053319-60053338 | None:intergenic | 55.0% | |
| ! | TACCTGTCGCAAGGAAGCGC+TGG | + | chr2_3:60052426-60052445 | None:intergenic | 60.0% |
| ! | CCCCAAGGGGGTGTAAAGTC+AGG | + | chr2_3:60052559-60052578 | None:intergenic | 60.0% |
| CACCAGCGCTTCCTTGCGAC+AGG | - | chr2_3:60052421-60052440 | Msa0303010:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 60051238 | 60053818 | 60051238 | ID=Msa0303010;Name=Msa0303010 |
| chr2_3 | mRNA | 60051238 | 60053818 | 60051238 | ID=Msa0303010-mRNA-1;Parent=Msa0303010;Name=Msa0303010-mRNA-1;_AED=0.19;_eAED=0.19;_QI=210|1|1|1|1|1|3|330|243 |
| chr2_3 | exon | 60051238 | 60051816 | 60051238 | ID=Msa0303010-mRNA-1:exon:19552;Parent=Msa0303010-mRNA-1 |
| chr2_3 | exon | 60052432 | 60052731 | 60052432 | ID=Msa0303010-mRNA-1:exon:19551;Parent=Msa0303010-mRNA-1 |
| chr2_3 | exon | 60053426 | 60053818 | 60053426 | ID=Msa0303010-mRNA-1:exon:19550;Parent=Msa0303010-mRNA-1 |
| chr2_3 | five_prime_UTR | 60053609 | 60053818 | 60053609 | ID=Msa0303010-mRNA-1:five_prime_utr;Parent=Msa0303010-mRNA-1 |
| chr2_3 | CDS | 60053426 | 60053608 | 60053426 | ID=Msa0303010-mRNA-1:cds;Parent=Msa0303010-mRNA-1 |
| chr2_3 | CDS | 60052432 | 60052731 | 60052432 | ID=Msa0303010-mRNA-1:cds;Parent=Msa0303010-mRNA-1 |
| chr2_3 | CDS | 60051568 | 60051816 | 60051568 | ID=Msa0303010-mRNA-1:cds;Parent=Msa0303010-mRNA-1 |
| chr2_3 | three_prime_UTR | 60051238 | 60051567 | 60051238 | ID=Msa0303010-mRNA-1:three_prime_utr;Parent=Msa0303010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
