Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264960 | XP_003597525.1 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 1.74e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264960 | sp|Q9SID1|BBX25_ARATH | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.91e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264960 | G7IHV4 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 8.31e-178 | 497 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0264960 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074140 | Msa0264960 | 0.836337 | 9.925935e-57 | -8.615850e-47 |
| Msa0074180 | Msa0264960 | 0.838636 | 2.556642e-57 | -8.615850e-47 |
| Msa0116590 | Msa0264960 | 0.802121 | 6.518388e-49 | -8.615850e-47 |
| Msa0223780 | Msa0264960 | 0.856554 | 2.974108e-62 | -8.615850e-47 |
| Msa0264960 | Msa0301260 | -0.839279 | 1.742057e-57 | -8.615850e-47 |
| Msa0264960 | Msa0303010 | 0.999742 | 0.000000e+00 | -8.615850e-47 |
| Msa0264960 | Msa0350070 | 0.924100 | 1.105308e-89 | -8.615850e-47 |
| Msa0264960 | Msa0396640 | 0.923241 | 3.440986e-89 | -8.615850e-47 |
| Msa0264960 | Msa0402510 | 0.816706 | 4.816082e-52 | -8.615850e-47 |
| Msa0264960 | Msa0415950 | 0.812852 | 3.441060e-51 | -8.615850e-47 |
| Msa0264960 | Msa0444170 | 0.914551 | 1.678908e-84 | -8.615850e-47 |
| Msa0264960 | Msa0448980 | 0.854001 | 1.645565e-61 | -8.615850e-47 |
| Msa0264960 | Msa0449880 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0264960 | Msa0480250 | 0.812685 | 3.744242e-51 | -8.615850e-47 |
| Msa0264960 | Msa0491730 | 0.918132 | 2.272554e-86 | -8.615850e-47 |
| Msa0264960 | Msa0497160 | 0.820911 | 5.341874e-53 | -8.615850e-47 |
| Msa0264960 | Msa0501930 | 0.807126 | 5.887225e-50 | -8.615850e-47 |
| Msa0264960 | Msa0501940 | 0.801065 | 1.073424e-48 | -8.615850e-47 |
| Msa0264960 | Msa0503040 | 0.833021 | 6.773067e-56 | -8.615850e-47 |
| Msa0264960 | Msa0575960 | 0.817563 | 3.091136e-52 | -8.615850e-47 |
| Msa0264960 | Msa0664210 | 0.810943 | 8.963370e-51 | -8.615850e-47 |
| Msa0264960 | Msa0664270 | 0.802984 | 4.328564e-49 | -8.615850e-47 |
| Msa0264960 | Msa0689940 | 0.815238 | 1.024306e-51 | -8.615850e-47 |
| Msa0264960 | Msa0792480 | 0.802696 | 4.963258e-49 | -8.615850e-47 |
| Msa0264960 | Msa0896380 | 0.806365 | 8.523428e-50 | -8.615850e-47 |
| Msa0264960 | Msa0961580 | 0.805175 | 1.515727e-49 | -8.615850e-47 |
| Msa0264960 | Msa1085570 | 0.802249 | 6.136433e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264960 | MtrunA17_Chr2g0329511 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 0.0 | 497 |
| Msa0264960 | MtrunA17_Chr4g0033641 | 70.082 | 244 | 68 | 3 | 1 | 243 | 1 | 240 | 1.61e-123 | 350 |
| Msa0264960 | MtrunA17_Chr2g0314671 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.28e-42 | 144 |
| Msa0264960 | MtrunA17_Chr1g0155811 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 8.62e-37 | 130 |
| Msa0264960 | MtrunA17_Chr3g0142221 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 9.13e-35 | 124 |
| Msa0264960 | MtrunA17_Chr3g0145061 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 6.88e-34 | 122 |
| Msa0264960 | MtrunA17_Chr4g0035651 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.30e-32 | 118 |
| Msa0264960 | MtrunA17_Chr5g0405151 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 2.85e-23 | 93.2 |
| Msa0264960 | MtrunA17_Chr3g0136701 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.86e-17 | 79.7 |
| Msa0264960 | MtrunA17_Chr7g0220721 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 7.41e-17 | 79.0 |
| Msa0264960 | MtrunA17_Chr7g0220721 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 3.46e-11 | 62.4 |
| Msa0264960 | MtrunA17_Chr1g0150471 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 2.61e-16 | 76.6 |
| Msa0264960 | MtrunA17_Chr4g0072871 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 2.94e-15 | 74.3 |
| Msa0264960 | MtrunA17_Chr7g0268691 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 3.56e-13 | 68.2 |
| Msa0264960 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 6.27e-12 | 64.7 |
| Msa0264960 | MtrunA17_Chr3g0120711 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 5.26e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264960 | AT2G31380.1 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.96e-94 | 276 |
| Msa0264960 | AT1G06040.1 | 57.087 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 9.18e-94 | 276 |
| Msa0264960 | AT1G06040.2 | 62.941 | 170 | 52 | 4 | 1 | 161 | 1 | 168 | 9.52e-68 | 207 |
| Msa0264960 | AT1G78600.1 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.50e-41 | 142 |
| Msa0264960 | AT1G78600.2 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 9.98e-41 | 142 |
| Msa0264960 | AT4G10240.1 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.37e-35 | 124 |
| Msa0264960 | AT1G75540.1 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 4.90e-34 | 125 |
| Msa0264960 | AT4G39070.1 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.68e-30 | 113 |
| Msa0264960 | AT2G21320.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 1.77e-23 | 93.6 |
| Msa0264960 | AT4G38960.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.68e-23 | 92.8 |
| Msa0264960 | AT4G38960.6 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.68e-23 | 92.8 |
| Msa0264960 | AT5G15850.1 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 2.85e-17 | 80.1 |
| Msa0264960 | AT2G24790.1 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.22e-17 | 78.2 |
| Msa0264960 | AT2G24790.2 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.05e-16 | 76.6 |
| Msa0264960 | AT3G02380.1 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.19e-15 | 75.5 |
| Msa0264960 | AT5G24930.1 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.47e-15 | 75.5 |
| Msa0264960 | AT5G15840.1 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 5.86e-15 | 73.6 |
| Msa0264960 | AT5G15840.2 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.03e-15 | 72.8 |
| Msa0264960 | AT2G33500.2 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.17e-12 | 65.9 |
| Msa0264960 | AT1G28050.1 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.21e-12 | 65.9 |
| Msa0264960 | AT2G33500.1 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.30e-12 | 65.9 |
| Msa0264960 | AT2G47890.1 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.50e-11 | 61.6 |
| Msa0264960 | AT2G47890.3 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 7.10e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGGGAATAATTTATT+TGG | 0.153400 | 2_2:-65116761 | Msa0264960:three_prime_UTR |
| ACTTGGCATATGTCACATTT+AGG | 0.154164 | 2_2:+65118586 | None:intergenic |
| GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2_2:+65117786 | None:intergenic |
| TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2_2:-65117686 | Msa0264960:CDS |
| TAGTAAGGCTCGTATCTTTA+TGG | 0.266201 | 2_2:-65116539 | Msa0264960:three_prime_UTR |
| CACGGTTGCAATTTCATGTT+TGG | 0.282058 | 2_2:-65116470 | Msa0264960:three_prime_UTR |
| ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2_2:+65117754 | None:intergenic |
| CTTGGCATATGTCACATTTA+GGG | 0.307139 | 2_2:+65118587 | None:intergenic |
| TGATTTGCAGAAAGGCTTCC+AGG | 0.309803 | 2_2:+65117859 | None:intergenic |
| TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2_2:+65116845 | None:intergenic |
| TTTGTTCTTAAAGTTTCATT+AGG | 0.326962 | 2_2:-65118792 | Msa0264960:five_prime_UTR |
| ATTGTATAATATAATATTCA+TGG | 0.339896 | 2_2:+65118889 | None:intergenic |
| AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2_2:+65116894 | None:intergenic |
| CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2_2:-65117022 | Msa0264960:CDS |
| TATGGTGGGATAGTAATAAT+AGG | 0.368705 | 2_2:-65116521 | Msa0264960:three_prime_UTR |
| TTTGGCGCAGTTAGATTTCA+TGG | 0.374267 | 2_2:+65117804 | None:intergenic |
| TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2_2:-65116797 | Msa0264960:CDS |
| TCAACTCAAAGTATTGTATT+CGG | 0.385669 | 2_2:+65116640 | None:intergenic |
| TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2_2:+65116914 | None:intergenic |
| GCACAGCAAATCATTGTTGC+AGG | 0.405281 | 2_2:+65118715 | None:intergenic |
| TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2_2:-65117014 | Msa0264960:CDS |
| CTAGAATGATACAAATAGTA+AGG | 0.464175 | 2_2:-65116554 | Msa0264960:three_prime_UTR |
| CAAAATATCAACTCAAGTAA+TGG | 0.465158 | 2_2:+65118811 | None:intergenic |
| CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2_2:+65116785 | None:intergenic |
| TATTGTATTCGGAGAGAAGT+AGG | 0.478824 | 2_2:+65116651 | None:intergenic |
| AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2_2:+65116943 | None:intergenic |
| AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2_2:+65117718 | None:intergenic |
| TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2_2:+65117757 | None:intergenic |
| TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2_2:+65116871 | None:intergenic |
| CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2_2:-65117768 | Msa0264960:CDS |
| CACCAGCGCTTCCTTGCGAC+AGG | 0.519290 | 2_2:-65117838 | Msa0264960:CDS |
| AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2_2:+65117851 | None:intergenic |
| TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2_2:-65117009 | Msa0264960:CDS |
| AGTTAGATTTCATGGCCACT+TGG | 0.554538 | 2_2:+65117812 | None:intergenic |
| TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2_2:+65117012 | None:intergenic |
| TACCTGTCGCAAGGAAGCGC+TGG | 0.556206 | 2_2:+65117836 | None:intergenic |
| AGACGACGAACAAACTCACT+TGG | 0.565694 | 2_2:-65117782 | Msa0264960:CDS |
| GACGAATCGATTCATTTACC+TGG | 0.577934 | 2_2:-65117877 | Msa0264960:CDS |
| GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2_2:-65116996 | Msa0264960:CDS |
| ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2_2:-65116995 | Msa0264960:CDS |
| TAAGGCTCGTATCTTTATGG+TGG | 0.583599 | 2_2:-65116536 | Msa0264960:three_prime_UTR |
| AGCTTGCAAGCAAGCATCAG+AGG | 0.588673 | 2_2:-65118639 | Msa0264960:CDS |
| AAGTATGTTTATAAGTTGTG+TGG | 0.591103 | 2_2:-65116618 | Msa0264960:three_prime_UTR |
| TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2_2:-65116960 | Msa0264960:CDS |
| AAGGCTCGTATCTTTATGGT+GGG | 0.611081 | 2_2:-65116535 | Msa0264960:three_prime_UTR |
| AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2_2:+65117688 | None:intergenic |
| GGATGAAGCAAATGATCATG+TGG | 0.623188 | 2_2:-65116776 | Msa0264960:exon |
| TACTCTTAAGAGATTTGACA+CGG | 0.623353 | 2_2:-65116488 | Msa0264960:three_prime_UTR |
| GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2_2:+65116790 | None:intergenic |
| CCACTTGGATACCTGTCGCA+AGG | 0.630313 | 2_2:+65117827 | None:intergenic |
| ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2_2:+65117689 | None:intergenic |
| GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2_2:+65116923 | None:intergenic |
| TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2_2:+65117690 | None:intergenic |
| GATGAAGCAAATGATCATGT+GGG | 0.669991 | 2_2:-65116775 | Msa0264960:exon |
| AGACAGGGCACTCTTCTGTG+AGG | 0.698154 | 2_2:-65117905 | Msa0264960:CDS |
| CCTTGCGACAGGTATCCAAG+TGG | 0.753321 | 2_2:-65117827 | Msa0264960:CDS |
| AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2_2:+65117691 | None:intergenic |
| AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2_2:-65116999 | Msa0264960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATAATATAATATTCA+TGG | + | chr2_2:65116535-65116554 | None:intergenic | 10.0% |
| !! | TATAATAAACTCAAATAAAT+CGG | - | chr2_2:65117352-65117371 | Msa0264960:intron | 10.0% |
| !!! | ACAATTTCAAAATTTTAATT+TGG | + | chr2_2:65118745-65118764 | None:intergenic | 10.0% |
| !!! | TTCATATTTTATTTTTCTCT+TGG | - | chr2_2:65116473-65116492 | Msa0264960:three_prime_UTR | 15.0% |
| !!! | AGACAAAAAAACATTTTATA+AGG | + | chr2_2:65117899-65117918 | None:intergenic | 15.0% |
| !! | TTTGTTCTTAAAGTTTCATT+AGG | - | chr2_2:65116629-65116648 | Msa0264960:three_prime_UTR | 20.0% |
| !! | AAAAAACAGAGAGAAAATTA+AGG | + | chr2_2:65116873-65116892 | None:intergenic | 20.0% |
| !! | TTCATACATGAGAAATTAAT+AGG | - | chr2_2:65116961-65116980 | Msa0264960:CDS | 20.0% |
| !!! | TTCACAATTAATTCTTCTTT+TGG | - | chr2_2:65117020-65117039 | Msa0264960:CDS | 20.0% |
| !! | ACATAATAAGTAACAGTTAT+AGG | + | chr2_2:65117430-65117449 | None:intergenic | 20.0% |
| !!! | ATGCAACTTTATTTCATAAT+TGG | - | chr2_2:65117794-65117813 | Msa0264960:CDS | 20.0% |
| !!! | TTACAAATTTTGTTAGTTCA+TGG | + | chr2_2:65117833-65117852 | None:intergenic | 20.0% |
| !! | TGAAATCGAATATTTAACTA+AGG | + | chr2_2:65117861-65117880 | None:intergenic | 20.0% |
| !!! | TTACAAAACTACATGTTTTT+AGG | + | chr2_2:65117932-65117951 | None:intergenic | 20.0% |
| !!! | TTTTGTTATAATTGAGCTAA+GGG | + | chr2_2:65118108-65118127 | None:intergenic | 20.0% |
| !! | ATCATGTATCATTAGATAAT+AGG | + | chr2_2:65118141-65118160 | None:intergenic | 20.0% |
| !! | TATCTAATGATACATGATTA+AGG | - | chr2_2:65118143-65118162 | Msa0264960:intron | 20.0% |
| !! | ATCTAATGATACATGATTAA+GGG | - | chr2_2:65118144-65118163 | Msa0264960:intron | 20.0% |
| !! | CATTTCTTGTATTTAATCAT+GGG | + | chr2_2:65118316-65118335 | None:intergenic | 20.0% |
| !! | ACATTTCTTGTATTTAATCA+TGG | + | chr2_2:65118317-65118336 | None:intergenic | 20.0% |
| ! | CAAAATATCAACTCAAGTAA+TGG | + | chr2_2:65116613-65116632 | None:intergenic | 25.0% |
| !! | TAAGGTGCTAATTAATTACT+TGG | + | chr2_2:65116855-65116874 | None:intergenic | 25.0% |
| !! | TAACCTCTTTTAAACACTTT+AGG | - | chr2_2:65117166-65117185 | Msa0264960:intron | 25.0% |
| !! | AATCCTAAAGTGTTTAAAAG+AGG | + | chr2_2:65117172-65117191 | None:intergenic | 25.0% |
| ! | ACTATTTACATAAGTCATTC+TGG | - | chr2_2:65117282-65117301 | Msa0264960:intron | 25.0% |
| ! | AATTTGTACGAACTAAAATG+TGG | - | chr2_2:65117950-65117969 | Msa0264960:intron | 25.0% |
| !!! | CTTTTGTTATAATTGAGCTA+AGG | + | chr2_2:65118109-65118128 | None:intergenic | 25.0% |
| ! | CTTAGCTCAATTATAACAAA+AGG | - | chr2_2:65118107-65118126 | Msa0264960:intron | 25.0% |
| ! | TTAATCATGGGAAAATACTT+GGG | + | chr2_2:65118304-65118323 | None:intergenic | 25.0% |
| ! | TTTAATCATGGGAAAATACT+TGG | + | chr2_2:65118305-65118324 | None:intergenic | 25.0% |
| ! | TGAAGCACAATAAGAAAAAA+AGG | + | chr2_2:65118381-65118400 | None:intergenic | 25.0% |
| ! | TCATGTGGGAATAATTTATT+TGG | - | chr2_2:65118660-65118679 | Msa0264960:CDS | 25.0% |
| !!! | TCAACTCAAAGTATTGTATT+CGG | + | chr2_2:65118784-65118803 | None:intergenic | 25.0% |
| ! | AAGTATGTTTATAAGTTGTG+TGG | - | chr2_2:65118803-65118822 | Msa0264960:five_prime_UTR | 25.0% |
| ! | CTAGAATGATACAAATAGTA+AGG | - | chr2_2:65118867-65118886 | Msa0264960:five_prime_UTR | 25.0% |
| ! | CAAACAACATTGTCCATTTT+TGG | - | chr2_2:65116556-65116575 | Msa0264960:three_prime_UTR | 30.0% |
| !! | GAAGTGTTTTAAGCCAAAAA+TGG | + | chr2_2:65116572-65116591 | None:intergenic | 30.0% |
| GAAATTAATAGGTCATCCAA+AGG | - | chr2_2:65116972-65116991 | Msa0264960:CDS | 30.0% | |
| AAGTTAAGACAACATACCTT+TGG | + | chr2_2:65116991-65117010 | None:intergenic | 30.0% | |
| ! | TCATATTTTGTGTTGAAGAC+AGG | - | chr2_2:65117500-65117519 | Msa0264960:intron | 30.0% |
| ! | CATATTTTGTGTTGAAGACA+GGG | - | chr2_2:65117501-65117520 | Msa0264960:intron | 30.0% |
| ATAAAACAACAAAGACAGCT+AGG | - | chr2_2:65118011-65118030 | Msa0264960:intron | 30.0% | |
| TAAAACAACAAAGACAGCTA+GGG | - | chr2_2:65118012-65118031 | Msa0264960:intron | 30.0% | |
| ! | TTTTCTTATTGTGCTTCAGA+AGG | - | chr2_2:65118383-65118402 | Msa0264960:intron | 30.0% |
| AGTTTCTGTGTGATGAATAA+TGG | + | chr2_2:65118530-65118549 | None:intergenic | 30.0% | |
| ! | TATGGTGGGATAGTAATAAT+AGG | - | chr2_2:65118900-65118919 | Msa0264960:five_prime_UTR | 30.0% |
| TACTCTTAAGAGATTTGACA+CGG | - | chr2_2:65118933-65118952 | Msa0264960:five_prime_UTR | 30.0% | |
| CTTGGCATATGTCACATTTA+GGG | + | chr2_2:65116837-65116856 | None:intergenic | 35.0% | |
| ACTTGGCATATGTCACATTT+AGG | + | chr2_2:65116838-65116857 | None:intergenic | 35.0% | |
| ! | TTAATTCTTCTTTTGGCCCT+TGG | - | chr2_2:65117027-65117046 | Msa0264960:intron | 35.0% |
| AAGTAGCATGTATGAGTTAG+TGG | - | chr2_2:65117084-65117103 | Msa0264960:intron | 35.0% | |
| AGTAGCATGTATGAGTTAGT+GGG | - | chr2_2:65117085-65117104 | Msa0264960:intron | 35.0% | |
| TGTATGAGTTAGTGGGAATT+AGG | - | chr2_2:65117092-65117111 | Msa0264960:intron | 35.0% | |
| !! | CAATTGTCTAAGAGCATCTT+TGG | + | chr2_2:65117379-65117398 | None:intergenic | 35.0% |
| ACTTGATGTGTATTCCTCTT+AGG | + | chr2_2:65117670-65117689 | None:intergenic | 35.0% | |
| ATTAAATCTGGGTCACACAA+AGG | + | chr2_2:65118261-65118280 | None:intergenic | 35.0% | |
| TTTGTTAGACATGTGTGACT+TGG | + | chr2_2:65118553-65118572 | None:intergenic | 35.0% | |
| TCACGTATGAGTTCAATTCT+AGG | + | chr2_2:65118579-65118598 | None:intergenic | 35.0% | |
| GATGAAGCAAATGATCATGT+GGG | - | chr2_2:65118646-65118665 | Msa0264960:CDS | 35.0% | |
| TATTGTATTCGGAGAGAAGT+AGG | + | chr2_2:65118773-65118792 | None:intergenic | 35.0% | |
| TAGTAAGGCTCGTATCTTTA+TGG | - | chr2_2:65118882-65118901 | Msa0264960:five_prime_UTR | 35.0% | |
| CTTTGAGCTTGGTCAAGATT+AGG | - | chr2_2:65117051-65117070 | Msa0264960:intron | 40.0% | |
| GTACATACAGGTGAAGCAAA+AGG | + | chr2_2:65117461-65117480 | None:intergenic | 40.0% | |
| CTTCACCTGTATGTACAAAC+AGG | - | chr2_2:65117465-65117484 | Msa0264960:intron | 40.0% | |
| CTTGTCCTGTTTGTACATAC+AGG | + | chr2_2:65117473-65117492 | None:intergenic | 40.0% | |
| ! | GACGAATCGATTCATTTACC+TGG | - | chr2_2:65117544-65117563 | Msa0264960:intron | 40.0% |
| AGTTAGATTTCATGGCCACT+TGG | + | chr2_2:65117612-65117631 | None:intergenic | 40.0% | |
| TTTGGCGCAGTTAGATTTCA+TGG | + | chr2_2:65117620-65117639 | None:intergenic | 40.0% | |
| TGATGTGTATTCCTCTTAGG+TGG | + | chr2_2:65117667-65117686 | None:intergenic | 40.0% | |
| ATAAGTCATCAACACCCCAA+GGG | + | chr2_2:65117735-65117754 | None:intergenic | 40.0% | |
| AATAAGTCATCAACACCCCA+AGG | + | chr2_2:65117736-65117755 | None:intergenic | 40.0% | |
| !! | TTGGGGTGTTGATGACTTAT+TGG | - | chr2_2:65117735-65117754 | Msa0264960:CDS | 40.0% |
| !! | ACATGATTAAGGGAAGCACT+TGG | - | chr2_2:65118154-65118173 | Msa0264960:intron | 40.0% |
| !! | CATGATTAAGGGAAGCACTT+GGG | - | chr2_2:65118155-65118174 | Msa0264960:intron | 40.0% |
| GTGGCTCAGATTTAATGTCA+CGG | + | chr2_2:65118194-65118213 | None:intergenic | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | - | chr2_2:65118265-65118284 | Msa0264960:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr2_2:65118187-65118206 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr2_2:65118186-65118205 | None:intergenic | 40.0% | |
| CATTTGCTTCATCCAAGATC+AGG | + | chr2_2:65118639-65118658 | None:intergenic | 40.0% | |
| GGATGAAGCAAATGATCATG+TGG | - | chr2_2:65118645-65118664 | Msa0264960:CDS | 40.0% | |
| TAAGGCTCGTATCTTTATGG+TGG | - | chr2_2:65118885-65118904 | Msa0264960:five_prime_UTR | 40.0% | |
| AAGGCTCGTATCTTTATGGT+GGG | - | chr2_2:65118886-65118905 | Msa0264960:five_prime_UTR | 40.0% | |
| CACGGTTGCAATTTCATGTT+TGG | - | chr2_2:65118951-65118970 | Msa0264960:five_prime_UTR | 40.0% | |
| GCACAGCAAATCATTGTTGC+AGG | + | chr2_2:65116709-65116728 | None:intergenic | 45.0% | |
| TGACCAAGCTCAAAGTCCAA+GGG | + | chr2_2:65117046-65117065 | None:intergenic | 45.0% | |
| TTGACCAAGCTCAAAGTCCA+AGG | + | chr2_2:65117047-65117066 | None:intergenic | 45.0% | |
| ! | TGATTTGCAGAAAGGCTTCC+AGG | + | chr2_2:65117565-65117584 | None:intergenic | 45.0% |
| ! | GTGAGTTTGTTCGTCGTCTT+TGG | + | chr2_2:65117638-65117657 | None:intergenic | 45.0% |
| AGACGACGAACAAACTCACT+TGG | - | chr2_2:65117639-65117658 | Msa0264960:intron | 45.0% | |
| TAAGTCATCAACACCCCAAG+GGG | + | chr2_2:65117734-65117753 | None:intergenic | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | + | chr2_2:65118246-65118265 | None:intergenic | 45.0% |
| CAGAAGGATTCCATGCAGTT+TGG | - | chr2_2:65118399-65118418 | Msa0264960:intron | 45.0% | |
| TTCCATGCAGTTTGGAGAGA+TGG | - | chr2_2:65118407-65118426 | Msa0264960:intron | 45.0% | |
| TTCCATCTCTCCAAACTGCA+TGG | + | chr2_2:65118412-65118431 | None:intergenic | 45.0% | |
| TGCAGTTTGGAGAGATGGAA+TGG | - | chr2_2:65118412-65118431 | Msa0264960:intron | 45.0% | |
| AGAGATGGAATGGTTCACAG+AGG | - | chr2_2:65118422-65118441 | Msa0264960:intron | 45.0% | |
| ATGGAATGGTTCACAGAGGA+GGG | - | chr2_2:65118426-65118445 | Msa0264960:intron | 45.0% | |
| ! | TTCACAGAGGAGGGTCTTTT+TGG | - | chr2_2:65118435-65118454 | Msa0264960:intron | 45.0% |
| TGACTTCACTCAAGAAGCCA+TGG | - | chr2_2:65118461-65118480 | Msa0264960:intron | 45.0% | |
| TGGTTGCTAGCATGAGTTAC+TGG | + | chr2_2:65118510-65118529 | None:intergenic | 45.0% | |
| TACTTTACCGTGCCTGATCT+TGG | - | chr2_2:65118624-65118643 | Msa0264960:CDS | 45.0% | |
| AGCTTGCAAGCAAGCATCAG+AGG | - | chr2_2:65116782-65116801 | Msa0264960:exon | 50.0% | |
| !! | AGCGCTGGTGATTTGCAGAA+AGG | + | chr2_2:65117573-65117592 | None:intergenic | 50.0% |
| CTCACTTGGAACCACCTAAG+AGG | - | chr2_2:65117653-65117672 | Msa0264960:intron | 50.0% | |
| ! | AAGTCAGGCACTTGCTGAGA+AGG | + | chr2_2:65117706-65117725 | None:intergenic | 50.0% |
| AAGTCATCAACACCCCAAGG+GGG | + | chr2_2:65117733-65117752 | None:intergenic | 50.0% | |
| GTGTGGCAATGTGTGTTGTG+TGG | + | chr2_2:65118213-65118232 | None:intergenic | 50.0% | |
| ACACATTGCCACACAGCATC+TGG | - | chr2_2:65118219-65118238 | Msa0264960:intron | 50.0% | |
| CACATTGCCACACAGCATCT+GGG | - | chr2_2:65118220-65118239 | Msa0264960:intron | 50.0% | |
| GATGGAATGGTTCACAGAGG+AGG | - | chr2_2:65118425-65118444 | Msa0264960:intron | 50.0% | |
| GCATGAGTTACTGGAAGCTG+AGG | + | chr2_2:65118501-65118520 | None:intergenic | 50.0% | |
| GCTTCATCCAAGATCAGGCA+CGG | + | chr2_2:65118634-65118653 | None:intergenic | 50.0% | |
| TGGCCCTTGGACTTTGAGCT+TGG | - | chr2_2:65117040-65117059 | Msa0264960:intron | 55.0% | |
| ! | AGACAGGGCACTCTTCTGTG+AGG | - | chr2_2:65117516-65117535 | Msa0264960:intron | 55.0% |
| CCACTTGGATACCTGTCGCA+AGG | + | chr2_2:65117597-65117616 | None:intergenic | 55.0% | |
| CCTTGCGACAGGTATCCAAG+TGG | - | chr2_2:65117594-65117613 | Msa0264960:intron | 55.0% | |
| TGCCTGACTTTACACCCCCT+TGG | - | chr2_2:65117716-65117735 | Msa0264960:CDS | 55.0% | |
| GCCTGACTTTACACCCCCTT+GGG | - | chr2_2:65117717-65117736 | Msa0264960:CDS | 55.0% | |
| CCTGACTTTACACCCCCTTG+GGG | - | chr2_2:65117718-65117737 | Msa0264960:CDS | 55.0% | |
| AGGAACTTCAGCTGCAGCCA+TGG | + | chr2_2:65118481-65118500 | None:intergenic | 55.0% | |
| ! | TACCTGTCGCAAGGAAGCGC+TGG | + | chr2_2:65117588-65117607 | None:intergenic | 60.0% |
| ! | CCCCAAGGGGGTGTAAAGTC+AGG | + | chr2_2:65117721-65117740 | None:intergenic | 60.0% |
| TGTGTGGCCCAGATGCTGTG+TGG | + | chr2_2:65118230-65118249 | None:intergenic | 60.0% | |
| CACCAGCGCTTCCTTGCGAC+AGG | - | chr2_2:65117583-65117602 | Msa0264960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 65116463 | 65118980 | 65116463 | ID=Msa0264960;Name=Msa0264960 |
| chr2_2 | mRNA | 65116463 | 65118980 | 65116463 | ID=Msa0264960-mRNA-1;Parent=Msa0264960;Name=Msa0264960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=210|1|1|1|1|1|3|330|243 |
| chr2_2 | exon | 65116463 | 65117041 | 65116463 | ID=Msa0264960-mRNA-1:exon:20452;Parent=Msa0264960-mRNA-1 |
| chr2_2 | exon | 65117657 | 65117956 | 65117657 | ID=Msa0264960-mRNA-1:exon:20451;Parent=Msa0264960-mRNA-1 |
| chr2_2 | exon | 65118588 | 65118980 | 65118588 | ID=Msa0264960-mRNA-1:exon:20450;Parent=Msa0264960-mRNA-1 |
| chr2_2 | five_prime_UTR | 65118771 | 65118980 | 65118771 | ID=Msa0264960-mRNA-1:five_prime_utr;Parent=Msa0264960-mRNA-1 |
| chr2_2 | CDS | 65118588 | 65118770 | 65118588 | ID=Msa0264960-mRNA-1:cds;Parent=Msa0264960-mRNA-1 |
| chr2_2 | CDS | 65117657 | 65117956 | 65117657 | ID=Msa0264960-mRNA-1:cds;Parent=Msa0264960-mRNA-1 |
| chr2_2 | CDS | 65116793 | 65117041 | 65116793 | ID=Msa0264960-mRNA-1:cds;Parent=Msa0264960-mRNA-1 |
| chr2_2 | three_prime_UTR | 65116463 | 65116792 | 65116463 | ID=Msa0264960-mRNA-1:three_prime_utr;Parent=Msa0264960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
