Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502160 | KEH43958.1 | 85.000 | 280 | 36 | 1 | 1 | 280 | 1 | 274 | 1.04e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502160 | G8A101 | 85.000 | 280 | 36 | 1 | 1 | 280 | 1 | 274 | 4.96e-180 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0502160 | 0.857000 | 2.199177e-62 | -8.615850e-47 |
| Msa0502160 | Msa0514760 | 0.839624 | 1.417619e-57 | -8.615850e-47 |
| Msa0502160 | Msa0541200 | 0.800151 | 1.648660e-48 | -8.615850e-47 |
| Msa0502160 | Msa0627670 | 0.814332 | 1.626046e-51 | -8.615850e-47 |
| Msa0502160 | Msa0740760 | 0.804992 | 1.655306e-49 | -8.615850e-47 |
| Msa0502160 | Msa0863890 | 0.837553 | 4.857965e-57 | -8.615850e-47 |
| Msa0502160 | Msa0875260 | 0.831361 | 1.744144e-55 | -8.615850e-47 |
| Msa0502160 | Msa0993030 | 0.862400 | 5.206092e-64 | -8.615850e-47 |
| Msa0502160 | Msa1108650 | 0.826304 | 2.920064e-54 | -8.615850e-47 |
| Msa0502160 | Msa1419030 | 0.828996 | 6.590352e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502160 | MtrunA17_Chr1g0206471 | 85.000 | 280 | 36 | 1 | 1 | 280 | 1 | 274 | 0.0 | 506 |
| Msa0502160 | MtrunA17_Chr7g0270401 | 53.532 | 269 | 119 | 1 | 11 | 279 | 10 | 272 | 3.81e-100 | 294 |
| Msa0502160 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 3 | 9 | 196 | 8 | 194 | 7.12e-53 | 171 |
| Msa0502160 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.33e-39 | 137 |
| Msa0502160 | MtrunA17_Chr1g0207921 | 38.961 | 77 | 47 | 0 | 202 | 278 | 121 | 197 | 2.05e-11 | 62.0 |
| Msa0502160 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 7.00e-39 | 134 |
| Msa0502160 | MtrunA17_Chr7g0234161 | 57.407 | 108 | 46 | 0 | 137 | 244 | 16 | 123 | 5.51e-38 | 130 |
| Msa0502160 | MtrunA17_Chr3g0123031 | 54.128 | 109 | 32 | 2 | 172 | 280 | 1 | 91 | 6.72e-31 | 110 |
| Msa0502160 | MtrunA17_Chr6g0473661 | 28.455 | 246 | 156 | 5 | 38 | 275 | 229 | 462 | 1.24e-25 | 105 |
| Msa0502160 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 5.83e-23 | 92.8 |
| Msa0502160 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 4.45e-12 | 63.2 |
| Msa0502160 | MtrunA17_Chr8g0359311 | 48.193 | 83 | 43 | 0 | 197 | 279 | 17 | 99 | 9.23e-23 | 90.1 |
| Msa0502160 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 2.66e-21 | 85.9 |
| Msa0502160 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 5.13e-21 | 84.7 |
| Msa0502160 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 6.02e-14 | 67.0 |
| Msa0502160 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 1.57e-13 | 70.1 |
| Msa0502160 | MtrunA17_Chr6g0473651 | 30.405 | 148 | 84 | 3 | 116 | 256 | 23 | 158 | 7.56e-13 | 68.2 |
| Msa0502160 | MtrunA17_Chr7g0237161 | 38.272 | 81 | 50 | 0 | 180 | 260 | 3 | 83 | 6.71e-13 | 63.2 |
| Msa0502160 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 2.00e-12 | 62.8 |
| Msa0502160 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 4.93e-11 | 60.1 |
| Msa0502160 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 8.53e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 3_4:+44154966 | Msa0502160:CDS |
| AAAATTCATCGGAGGGTTAA+AGG | 0.265971 | 3_4:-44155049 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 3_4:+44155430 | Msa0502160:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 3_4:+44155350 | Msa0502160:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 3_4:-44155416 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 3_4:+44154973 | Msa0502160:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 3_4:-44154859 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 3_4:-44155500 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 3_4:+44155290 | Msa0502160:intron |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 3_4:+44154948 | Msa0502160:CDS |
| CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | 3_4:+44155088 | Msa0502160:CDS |
| GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | 3_4:+44155074 | Msa0502160:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 3_4:+44154482 | Msa0502160:CDS |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 3_4:-44154616 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 3_4:-44154629 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 3_4:+44155488 | Msa0502160:CDS |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 3_4:+44155100 | Msa0502160:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 3_4:+44154947 | Msa0502160:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 3_4:+44155421 | Msa0502160:CDS |
| AGAGCATCGCCACGTCGTTA+TGG | 0.401580 | 3_4:-44154463 | None:intergenic |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 3_4:-44154622 | None:intergenic |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 3_4:+44154901 | Msa0502160:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 3_4:+44154967 | Msa0502160:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 3_4:+44155006 | Msa0502160:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 3_4:-44154660 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 3_4:-44154617 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 3_4:+44154864 | Msa0502160:CDS |
| TCATCGGAGGGTTAAAGGTT+GGG | 0.441584 | 3_4:-44155044 | None:intergenic |
| GAGTAGCATATTGTTGGATC+TGG | 0.449360 | 3_4:-44154828 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 3_4:+44155410 | Msa0502160:CDS |
| AGCTTATGGTCAAAGCTAGA+AGG | 0.458142 | 3_4:+44155444 | Msa0502160:CDS |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 3_4:+44154940 | Msa0502160:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 3_4:+44155001 | Msa0502160:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 3_4:-44154834 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 3_4:+44154650 | Msa0502160:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 3_4:-44155101 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 3_4:+44155174 | Msa0502160:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 3_4:-44155123 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 3_4:-44155117 | None:intergenic |
| TTCATCGGAGGGTTAAAGGT+TGG | 0.478777 | 3_4:-44155045 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 3_4:+44154982 | Msa0502160:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 3_4:+44155360 | Msa0502160:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 3_4:+44155420 | Msa0502160:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 3_4:+44154900 | Msa0502160:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 3_4:-44155410 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 3_4:+44155413 | Msa0502160:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 3_4:+44155473 | Msa0502160:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 3_4:+44154872 | Msa0502160:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 3_4:-44154900 | None:intergenic |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 3_4:+44155416 | Msa0502160:CDS |
| GCATCGCCACGTCGTTATGG+TGG | 0.543846 | 3_4:-44154460 | None:intergenic |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 3_4:+44154905 | Msa0502160:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 3_4:-44155511 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 3_4:+44154831 | Msa0502160:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 3_4:-44154621 | None:intergenic |
| GGATCTGGTCCCCAAAATCA+CGG | 0.560539 | 3_4:-44154813 | None:intergenic |
| GATCTGGTCCCCAAAATCAC+GGG | 0.562207 | 3_4:-44154812 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 3_4:+44154977 | Msa0502160:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | 3_4:-44155093 | None:intergenic |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 3_4:-44154607 | None:intergenic |
| CGATGAACCCTAAAATTCAT+CGG | 0.578599 | 3_4:-44155060 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 3_4:+44155340 | Msa0502160:CDS |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 3_4:+44155466 | Msa0502160:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 3_4:+44154660 | Msa0502160:CDS |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 3_4:-44155523 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 3_4:-44154936 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 3_4:+44154882 | Msa0502160:CDS |
| GAACCCTAAAATTCATCGGA+GGG | 0.608005 | 3_4:-44155056 | None:intergenic |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | 3_4:-44154799 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 3_4:+44154834 | Msa0502160:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 3_4:-44155100 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 3_4:+44155337 | Msa0502160:CDS |
| TGAACCCTAAAATTCATCGG+AGG | 0.658564 | 3_4:-44155057 | None:intergenic |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 3_4:+44154688 | Msa0502160:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 3_4:-44155522 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 3_4:+44154883 | Msa0502160:CDS |
| AAAGCTAGAAGGTTCACAGA+GGG | 0.686944 | 3_4:+44155455 | Msa0502160:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 3_4:+44155119 | Msa0502160:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.714975 | 3_4:+44154454 | Msa0502160:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 3_4:+44154884 | Msa0502160:CDS |
| CAAAGCTAGAAGGTTCACAG+AGG | 0.776341 | 3_4:+44155454 | Msa0502160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr3_4:44154737-44154756 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | + | chr3_4:44155274-44155293 | Msa0502160:intron | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr3_4:44154737-44154756 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | + | chr3_4:44155274-44155293 | Msa0502160:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr3_4:44154546-44154565 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr3_4:44154546-44154565 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr3_4:44154547-44154566 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr3_4:44154547-44154566 | Msa0502160:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | chr3_4:44154733-44154752 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr3_4:44154760-44154779 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr3_4:44154761-44154780 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr3_4:44154762-44154781 | Msa0502160:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr3_4:44154763-44154782 | Msa0502160:intron | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr3_4:44154547-44154566 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr3_4:44154547-44154566 | Msa0502160:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | chr3_4:44154733-44154752 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr3_4:44154760-44154779 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr3_4:44154761-44154780 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr3_4:44154762-44154781 | Msa0502160:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr3_4:44154763-44154782 | Msa0502160:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr3_4:44154559-44154578 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr3_4:44154632-44154651 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr3_4:44154862-44154881 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr3_4:44154901-44154920 | Msa0502160:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr3_4:44154966-44154985 | Msa0502160:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr3_4:44154967-44154986 | Msa0502160:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr3_4:44154973-44154992 | Msa0502160:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr3_4:44155001-44155020 | Msa0502160:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr3_4:44155006-44155025 | Msa0502160:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr3_4:44155182-44155201 | Msa0502160:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | chr3_4:44155246-44155265 | Msa0502160:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr3_4:44155304-44155323 | Msa0502160:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr3_4:44155337-44155356 | Msa0502160:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr3_4:44154559-44154578 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr3_4:44154632-44154651 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr3_4:44154862-44154881 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr3_4:44154901-44154920 | Msa0502160:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr3_4:44154966-44154985 | Msa0502160:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr3_4:44154967-44154986 | Msa0502160:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr3_4:44154973-44154992 | Msa0502160:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr3_4:44155001-44155020 | Msa0502160:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr3_4:44155006-44155025 | Msa0502160:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr3_4:44155182-44155201 | Msa0502160:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | chr3_4:44155246-44155265 | Msa0502160:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr3_4:44155304-44155323 | Msa0502160:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr3_4:44155337-44155356 | Msa0502160:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr3_4:44154482-44154501 | Msa0502160:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr3_4:44154663-44154682 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr3_4:44154660-44154679 | Msa0502160:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr3_4:44154699-44154718 | Msa0502160:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr3_4:44154802-44154821 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr3_4:44154802-44154821 | Msa0502160:CDS | 35.0% |
| ! | TGATGTTTTCCCGTGATTTT+GGG | + | chr3_4:44154803-44154822 | Msa0502160:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr3_4:44154903-44154922 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr3_4:44154900-44154919 | Msa0502160:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | chr3_4:44154905-44154924 | Msa0502160:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr3_4:44154939-44154958 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr3_4:44154940-44154959 | Msa0502160:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr3_4:44154977-44154996 | Msa0502160:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr3_4:44154982-44155001 | Msa0502160:CDS | 35.0% | |
| AAAATTCATCGGAGGGTTAA+AGG | - | chr3_4:44155052-44155071 | None:intergenic | 35.0% | |
| ! | TTAACCCTCCGATGAATTTT+AGG | + | chr3_4:44155052-44155071 | Msa0502160:CDS | 35.0% |
| ! | TAACCCTCCGATGAATTTTA+GGG | + | chr3_4:44155053-44155072 | Msa0502160:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr3_4:44155063-44155082 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr3_4:44155290-44155309 | Msa0502160:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr3_4:44155340-44155359 | Msa0502160:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr3_4:44155393-44155412 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr3_4:44155514-44155533 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr3_4:44154482-44154501 | Msa0502160:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr3_4:44154663-44154682 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr3_4:44154660-44154679 | Msa0502160:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr3_4:44154699-44154718 | Msa0502160:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr3_4:44154802-44154821 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr3_4:44154802-44154821 | Msa0502160:CDS | 35.0% |
| ! | TGATGTTTTCCCGTGATTTT+GGG | + | chr3_4:44154803-44154822 | Msa0502160:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr3_4:44154903-44154922 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr3_4:44154900-44154919 | Msa0502160:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | chr3_4:44154905-44154924 | Msa0502160:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr3_4:44154939-44154958 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr3_4:44154940-44154959 | Msa0502160:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr3_4:44154977-44154996 | Msa0502160:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr3_4:44154982-44155001 | Msa0502160:CDS | 35.0% | |
| AAAATTCATCGGAGGGTTAA+AGG | - | chr3_4:44155052-44155071 | None:intergenic | 35.0% | |
| ! | TTAACCCTCCGATGAATTTT+AGG | + | chr3_4:44155052-44155071 | Msa0502160:CDS | 35.0% |
| ! | TAACCCTCCGATGAATTTTA+GGG | + | chr3_4:44155053-44155072 | Msa0502160:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr3_4:44155063-44155082 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr3_4:44155290-44155309 | Msa0502160:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr3_4:44155340-44155359 | Msa0502160:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr3_4:44155393-44155412 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr3_4:44155514-44155533 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr3_4:44154565-44154584 | Msa0502160:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr3_4:44154624-44154643 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr3_4:44154625-44154644 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | chr3_4:44154688-44154707 | Msa0502160:CDS | 40.0% | |
| ! | GATGTTTTCCCGTGATTTTG+GGG | + | chr3_4:44154804-44154823 | Msa0502160:CDS | 40.0% |
| GAGTAGCATATTGTTGGATC+TGG | - | chr3_4:44154831-44154850 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr3_4:44154831-44154850 | Msa0502160:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr3_4:44154864-44154883 | Msa0502160:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr3_4:44154872-44154891 | Msa0502160:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr3_4:44154883-44154902 | Msa0502160:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr3_4:44154884-44154903 | Msa0502160:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGA+GGG | - | chr3_4:44155059-44155078 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+AGG | - | chr3_4:44155060-44155079 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr3_4:44155103-44155122 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr3_4:44155310-44155329 | Msa0502160:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr3_4:44155350-44155369 | Msa0502160:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr3_4:44155360-44155379 | Msa0502160:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr3_4:44155394-44155413 | None:intergenic | 40.0% | |
| AGCTTATGGTCAAAGCTAGA+AGG | + | chr3_4:44155444-44155463 | Msa0502160:CDS | 40.0% | |
| AAAGCTAGAAGGTTCACAGA+GGG | + | chr3_4:44155455-44155474 | Msa0502160:CDS | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr3_4:44155503-44155522 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr3_4:44155525-44155544 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr3_4:44154565-44154584 | Msa0502160:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr3_4:44154624-44154643 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr3_4:44154625-44154644 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | chr3_4:44154688-44154707 | Msa0502160:CDS | 40.0% | |
| ! | GATGTTTTCCCGTGATTTTG+GGG | + | chr3_4:44154804-44154823 | Msa0502160:CDS | 40.0% |
| GAGTAGCATATTGTTGGATC+TGG | - | chr3_4:44154831-44154850 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr3_4:44154831-44154850 | Msa0502160:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr3_4:44154864-44154883 | Msa0502160:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr3_4:44154872-44154891 | Msa0502160:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr3_4:44154883-44154902 | Msa0502160:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr3_4:44154884-44154903 | Msa0502160:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGA+GGG | - | chr3_4:44155059-44155078 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+AGG | - | chr3_4:44155060-44155079 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr3_4:44155103-44155122 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr3_4:44155310-44155329 | Msa0502160:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr3_4:44155350-44155369 | Msa0502160:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr3_4:44155360-44155379 | Msa0502160:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr3_4:44155394-44155413 | None:intergenic | 40.0% | |
| AGCTTATGGTCAAAGCTAGA+AGG | + | chr3_4:44155444-44155463 | Msa0502160:CDS | 40.0% | |
| AAAGCTAGAAGGTTCACAGA+GGG | + | chr3_4:44155455-44155474 | Msa0502160:CDS | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr3_4:44155503-44155522 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr3_4:44155525-44155544 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr3_4:44154650-44154669 | Msa0502160:CDS | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr3_4:44154837-44154856 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr3_4:44154834-44154853 | Msa0502160:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr3_4:44154882-44154901 | Msa0502160:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr3_4:44154947-44154966 | Msa0502160:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr3_4:44154948-44154967 | Msa0502160:CDS | 45.0% |
| TCATCGGAGGGTTAAAGGTT+GGG | - | chr3_4:44155047-44155066 | None:intergenic | 45.0% | |
| TTCATCGGAGGGTTAAAGGT+TGG | - | chr3_4:44155048-44155067 | None:intergenic | 45.0% | |
| ACAAACCAATCAAGGGTGAC+CGG | - | chr3_4:44155096-44155115 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr3_4:44155100-44155119 | Msa0502160:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr3_4:44155104-44155123 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr3_4:44155126-44155145 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr3_4:44155174-44155193 | Msa0502160:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr3_4:44155385-44155404 | Msa0502160:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr3_4:44155413-44155432 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr3_4:44155410-44155429 | Msa0502160:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr3_4:44155413-44155432 | Msa0502160:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr3_4:44155419-44155438 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr3_4:44155416-44155435 | Msa0502160:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr3_4:44155420-44155439 | Msa0502160:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr3_4:44155421-44155440 | Msa0502160:CDS | 45.0% | |
| CAAAGCTAGAAGGTTCACAG+AGG | + | chr3_4:44155454-44155473 | Msa0502160:CDS | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | - | chr3_4:44155526-44155545 | None:intergenic | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr3_4:44154650-44154669 | Msa0502160:CDS | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr3_4:44154837-44154856 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr3_4:44154834-44154853 | Msa0502160:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr3_4:44154882-44154901 | Msa0502160:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr3_4:44154947-44154966 | Msa0502160:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr3_4:44154948-44154967 | Msa0502160:CDS | 45.0% |
| TCATCGGAGGGTTAAAGGTT+GGG | - | chr3_4:44155047-44155066 | None:intergenic | 45.0% | |
| TTCATCGGAGGGTTAAAGGT+TGG | - | chr3_4:44155048-44155067 | None:intergenic | 45.0% | |
| ACAAACCAATCAAGGGTGAC+CGG | - | chr3_4:44155096-44155115 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr3_4:44155100-44155119 | Msa0502160:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr3_4:44155104-44155123 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr3_4:44155126-44155145 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr3_4:44155174-44155193 | Msa0502160:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr3_4:44155385-44155404 | Msa0502160:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr3_4:44155413-44155432 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr3_4:44155410-44155429 | Msa0502160:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr3_4:44155413-44155432 | Msa0502160:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr3_4:44155419-44155438 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr3_4:44155416-44155435 | Msa0502160:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr3_4:44155420-44155439 | Msa0502160:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr3_4:44155421-44155440 | Msa0502160:CDS | 45.0% | |
| CAAAGCTAGAAGGTTCACAG+AGG | + | chr3_4:44155454-44155473 | Msa0502160:CDS | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | - | chr3_4:44155526-44155545 | None:intergenic | 45.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr3_4:44154619-44154638 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr3_4:44154620-44154639 | None:intergenic | 50.0% |
| GATCTGGTCCCCAAAATCAC+GGG | - | chr3_4:44154815-44154834 | None:intergenic | 50.0% | |
| GGATCTGGTCCCCAAAATCA+CGG | - | chr3_4:44154816-44154835 | None:intergenic | 50.0% | |
| GGTTCATCGCAATGCTGTTC+CGG | + | chr3_4:44155074-44155093 | Msa0502160:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr3_4:44155120-44155139 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr3_4:44155119-44155138 | Msa0502160:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr3_4:44155488-44155507 | Msa0502160:CDS | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr3_4:44154619-44154638 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr3_4:44154620-44154639 | None:intergenic | 50.0% |
| GATCTGGTCCCCAAAATCAC+GGG | - | chr3_4:44154815-44154834 | None:intergenic | 50.0% | |
| GGATCTGGTCCCCAAAATCA+CGG | - | chr3_4:44154816-44154835 | None:intergenic | 50.0% | |
| GGTTCATCGCAATGCTGTTC+CGG | + | chr3_4:44155074-44155093 | Msa0502160:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr3_4:44155120-44155139 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr3_4:44155119-44155138 | Msa0502160:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr3_4:44155488-44155507 | Msa0502160:CDS | 50.0% |
| GGCTTTCCACCATAACGACG+TGG | + | chr3_4:44154454-44154473 | Msa0502160:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | - | chr3_4:44154466-44154485 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr3_4:44154610-44154629 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | chr3_4:44155088-44155107 | Msa0502160:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr3_4:44155430-44155449 | Msa0502160:CDS | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | + | chr3_4:44154454-44154473 | Msa0502160:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | - | chr3_4:44154466-44154485 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr3_4:44154610-44154629 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | chr3_4:44155088-44155107 | Msa0502160:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr3_4:44155430-44155449 | Msa0502160:CDS | 55.0% | |
| GCATCGCCACGTCGTTATGG+TGG | - | chr3_4:44154463-44154482 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr3_4:44155466-44155485 | Msa0502160:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr3_4:44155473-44155492 | Msa0502160:CDS | 60.0% |
| GCATCGCCACGTCGTTATGG+TGG | - | chr3_4:44154463-44154482 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr3_4:44155466-44155485 | Msa0502160:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr3_4:44155473-44155492 | Msa0502160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 44154452 | 44155550 | 44154452 | ID=Msa0502160;Name=Msa0502160 |
| chr3_4 | mRNA | 44154452 | 44155550 | 44154452 | ID=Msa0502160-mRNA-1;Parent=Msa0502160;Name=Msa0502160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr3_4 | exon | 44154452 | 44154503 | 44154452 | ID=Msa0502160-mRNA-1:exon:9396;Parent=Msa0502160-mRNA-1 |
| chr3_4 | exon | 44154605 | 44154720 | 44154605 | ID=Msa0502160-mRNA-1:exon:9397;Parent=Msa0502160-mRNA-1 |
| chr3_4 | exon | 44154784 | 44155203 | 44154784 | ID=Msa0502160-mRNA-1:exon:9398;Parent=Msa0502160-mRNA-1 |
| chr3_4 | exon | 44155296 | 44155550 | 44155296 | ID=Msa0502160-mRNA-1:exon:9399;Parent=Msa0502160-mRNA-1 |
| chr3_4 | CDS | 44154452 | 44154503 | 44154452 | ID=Msa0502160-mRNA-1:cds;Parent=Msa0502160-mRNA-1 |
| chr3_4 | CDS | 44154605 | 44154720 | 44154605 | ID=Msa0502160-mRNA-1:cds;Parent=Msa0502160-mRNA-1 |
| chr3_4 | CDS | 44154784 | 44155203 | 44154784 | ID=Msa0502160-mRNA-1:cds;Parent=Msa0502160-mRNA-1 |
| chr3_4 | CDS | 44155296 | 44155550 | 44155296 | ID=Msa0502160-mRNA-1:cds;Parent=Msa0502160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
