Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993030 | KEH43958.1 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 1.52e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993030 | G8A101 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0993030 | 0.920242 | 1.638634e-87 | -8.615850e-47 |
| Msa0627670 | Msa0993030 | 0.895865 | 6.379961e-76 | -8.615850e-47 |
| Msa0993030 | Msa1108650 | 0.896706 | 2.852540e-76 | -8.615850e-47 |
| Msa0993030 | Msa1419030 | 0.930524 | 1.444095e-93 | -8.615850e-47 |
| Msa0502160 | Msa0993030 | 0.862400 | 5.206092e-64 | -8.615850e-47 |
| Msa0514760 | Msa0993030 | 0.944043 | 4.018994e-103 | -8.615850e-47 |
| Msa0541200 | Msa0993030 | 0.850702 | 1.431838e-60 | -8.615850e-47 |
| Msa0863890 | Msa0993030 | 0.897156 | 1.846754e-76 | -8.615850e-47 |
| Msa0875260 | Msa0993030 | 0.933045 | 3.410113e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993030 | MtrunA17_Chr1g0206471 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 0.0 | 508 |
| Msa0993030 | MtrunA17_Chr7g0270401 | 53.333 | 270 | 120 | 1 | 11 | 280 | 10 | 273 | 2.35e-100 | 294 |
| Msa0993030 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 4 | 9 | 196 | 8 | 194 | 4.01e-53 | 171 |
| Msa0993030 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.38e-39 | 137 |
| Msa0993030 | MtrunA17_Chr1g0207921 | 40.845 | 71 | 42 | 0 | 208 | 278 | 127 | 197 | 1.95e-11 | 62.0 |
| Msa0993030 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 7.31e-39 | 134 |
| Msa0993030 | MtrunA17_Chr7g0234161 | 58.333 | 108 | 45 | 0 | 137 | 244 | 16 | 123 | 7.61e-39 | 132 |
| Msa0993030 | MtrunA17_Chr3g0123031 | 55.046 | 109 | 31 | 2 | 172 | 280 | 1 | 91 | 1.55e-31 | 112 |
| Msa0993030 | MtrunA17_Chr6g0473661 | 28.455 | 246 | 156 | 5 | 38 | 275 | 229 | 462 | 2.60e-25 | 104 |
| Msa0993030 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 5.36e-23 | 92.8 |
| Msa0993030 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 4.07e-12 | 63.2 |
| Msa0993030 | MtrunA17_Chr8g0359311 | 48.193 | 83 | 43 | 0 | 197 | 279 | 17 | 99 | 8.75e-23 | 90.1 |
| Msa0993030 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 2.63e-21 | 85.9 |
| Msa0993030 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 5.29e-21 | 84.7 |
| Msa0993030 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 5.22e-14 | 67.0 |
| Msa0993030 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 3.82e-13 | 68.9 |
| Msa0993030 | MtrunA17_Chr6g0473651 | 30.405 | 148 | 84 | 3 | 116 | 256 | 23 | 158 | 7.63e-13 | 68.2 |
| Msa0993030 | MtrunA17_Chr7g0237161 | 38.272 | 81 | 50 | 0 | 180 | 260 | 3 | 83 | 6.38e-13 | 63.2 |
| Msa0993030 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 1.96e-12 | 62.8 |
| Msa0993030 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 5.02e-11 | 60.1 |
| Msa0993030 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 8.04e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 6_4:+64241827 | Msa0993030:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 6_4:-64241910 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 6_4:+64242291 | Msa0993030:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 6_4:+64242211 | Msa0993030:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 6_4:-64242277 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 6_4:+64241834 | Msa0993030:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 6_4:-64241720 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 6_4:-64242361 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 6_4:+64242151 | Msa0993030:intron |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 6_4:+64241809 | Msa0993030:CDS |
| CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | 6_4:+64241949 | Msa0993030:CDS |
| GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | 6_4:+64241935 | Msa0993030:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 6_4:+64241343 | Msa0993030:CDS |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 6_4:-64241477 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 6_4:-64241490 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 6_4:+64242349 | Msa0993030:CDS |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 6_4:+64241961 | Msa0993030:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 6_4:+64241808 | Msa0993030:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 6_4:+64242282 | Msa0993030:CDS |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 6_4:-64241483 | None:intergenic |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 6_4:+64241828 | Msa0993030:CDS |
| CAGGGGATTTATTTAACAAA+GGG | 0.418457 | 6_4:+64241762 | Msa0993030:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 6_4:+64241867 | Msa0993030:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 6_4:-64241521 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 6_4:-64241478 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 6_4:+64242305 | Msa0993030:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 6_4:-64241905 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 6_4:+64241725 | Msa0993030:CDS |
| AGAGCATTGCCACGTCGTTA+TGG | 0.443549 | 6_4:-64241324 | None:intergenic |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 6_4:-64241689 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 6_4:+64242271 | Msa0993030:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 6_4:-64241906 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 6_4:+64241801 | Msa0993030:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 6_4:+64241862 | Msa0993030:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 6_4:-64241695 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 6_4:+64241511 | Msa0993030:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 6_4:-64241962 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 6_4:+64242035 | Msa0993030:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 6_4:-64241984 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 6_4:-64241978 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 6_4:+64241843 | Msa0993030:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 6_4:+64242221 | Msa0993030:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 6_4:+64242281 | Msa0993030:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.507596 | 6_4:+64241761 | Msa0993030:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 6_4:-64242271 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 6_4:+64242274 | Msa0993030:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 6_4:+64242334 | Msa0993030:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 6_4:+64241733 | Msa0993030:CDS |
| GGATTTATTTAACAAAGGGT+TGG | 0.538472 | 6_4:+64241766 | Msa0993030:CDS |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 6_4:+64242277 | Msa0993030:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 6_4:-64242372 | None:intergenic |
| CCTTTGTTAAATAAATCCCC+TGG | 0.546145 | 6_4:-64241761 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 6_4:+64241692 | Msa0993030:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 6_4:-64241482 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 6_4:+64241838 | Msa0993030:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | 6_4:-64241954 | None:intergenic |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 6_4:-64241468 | None:intergenic |
| GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | 6_4:-64241674 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 6_4:+64242201 | Msa0993030:CDS |
| CGATGAACCCTAAAATTCAT+CGG | 0.585773 | 6_4:-64241921 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | 6_4:-64241673 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 6_4:+64242327 | Msa0993030:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 6_4:+64241521 | Msa0993030:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 6_4:+64242297 | Msa0993030:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 6_4:-64241917 | None:intergenic |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 6_4:-64242384 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 6_4:-64241797 | None:intergenic |
| GCATTGCCACGTCGTTATGG+TGG | 0.603259 | 6_4:-64241321 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 6_4:+64241743 | Msa0993030:CDS |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | 6_4:-64241660 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 6_4:+64241695 | Msa0993030:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 6_4:-64241961 | None:intergenic |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 6_4:-64241918 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 6_4:+64242198 | Msa0993030:CDS |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 6_4:+64241549 | Msa0993030:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 6_4:-64242383 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 6_4:+64241744 | Msa0993030:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 6_4:+64242316 | Msa0993030:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 6_4:+64241980 | Msa0993030:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.712618 | 6_4:+64241315 | Msa0993030:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 6_4:+64241745 | Msa0993030:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 6_4:+64242315 | Msa0993030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr6_4:64241598-64241617 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | + | chr6_4:64242135-64242154 | Msa0993030:intron | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr6_4:64241598-64241617 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | + | chr6_4:64242135-64242154 | Msa0993030:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr6_4:64241407-64241426 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr6_4:64241407-64241426 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr6_4:64241408-64241427 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr6_4:64241408-64241427 | Msa0993030:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | chr6_4:64241594-64241613 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr6_4:64241621-64241640 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr6_4:64241622-64241641 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr6_4:64241623-64241642 | Msa0993030:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr6_4:64241624-64241643 | Msa0993030:intron | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr6_4:64241408-64241427 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr6_4:64241408-64241427 | Msa0993030:intron | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | - | chr6_4:64241594-64241613 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr6_4:64241621-64241640 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr6_4:64241622-64241641 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr6_4:64241623-64241642 | Msa0993030:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr6_4:64241624-64241643 | Msa0993030:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr6_4:64241420-64241439 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr6_4:64241493-64241512 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr6_4:64241723-64241742 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr6_4:64241762-64241781 | Msa0993030:CDS | 30.0% | |
| GGATTTATTTAACAAAGGGT+TGG | + | chr6_4:64241766-64241785 | Msa0993030:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr6_4:64241827-64241846 | Msa0993030:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr6_4:64241828-64241847 | Msa0993030:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr6_4:64241834-64241853 | Msa0993030:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr6_4:64241862-64241881 | Msa0993030:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr6_4:64241867-64241886 | Msa0993030:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr6_4:64242043-64242062 | Msa0993030:CDS | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr6_4:64242165-64242184 | Msa0993030:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr6_4:64242198-64242217 | Msa0993030:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr6_4:64241420-64241439 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr6_4:64241493-64241512 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr6_4:64241723-64241742 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr6_4:64241762-64241781 | Msa0993030:CDS | 30.0% | |
| GGATTTATTTAACAAAGGGT+TGG | + | chr6_4:64241766-64241785 | Msa0993030:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr6_4:64241827-64241846 | Msa0993030:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr6_4:64241828-64241847 | Msa0993030:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr6_4:64241834-64241853 | Msa0993030:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr6_4:64241862-64241881 | Msa0993030:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr6_4:64241867-64241886 | Msa0993030:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr6_4:64242043-64242062 | Msa0993030:CDS | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr6_4:64242165-64242184 | Msa0993030:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr6_4:64242198-64242217 | Msa0993030:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr6_4:64241343-64241362 | Msa0993030:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr6_4:64241524-64241543 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr6_4:64241521-64241540 | Msa0993030:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr6_4:64241560-64241579 | Msa0993030:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr6_4:64241663-64241682 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr6_4:64241663-64241682 | Msa0993030:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr6_4:64241764-64241783 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr6_4:64241761-64241780 | Msa0993030:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr6_4:64241800-64241819 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr6_4:64241801-64241820 | Msa0993030:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr6_4:64241838-64241857 | Msa0993030:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr6_4:64241843-64241862 | Msa0993030:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | chr6_4:64241913-64241932 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | chr6_4:64241913-64241932 | Msa0993030:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | chr6_4:64241914-64241933 | Msa0993030:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr6_4:64241924-64241943 | None:intergenic | 35.0% | |
| TGTTGTGTGCTTTGTGAATA+AGG | + | chr6_4:64242107-64242126 | Msa0993030:intron | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr6_4:64242151-64242170 | Msa0993030:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr6_4:64242201-64242220 | Msa0993030:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr6_4:64242254-64242273 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr6_4:64242375-64242394 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr6_4:64241343-64241362 | Msa0993030:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr6_4:64241524-64241543 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr6_4:64241521-64241540 | Msa0993030:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr6_4:64241560-64241579 | Msa0993030:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr6_4:64241663-64241682 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr6_4:64241663-64241682 | Msa0993030:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr6_4:64241764-64241783 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr6_4:64241761-64241780 | Msa0993030:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr6_4:64241800-64241819 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr6_4:64241801-64241820 | Msa0993030:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr6_4:64241838-64241857 | Msa0993030:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr6_4:64241843-64241862 | Msa0993030:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | chr6_4:64241913-64241932 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | chr6_4:64241913-64241932 | Msa0993030:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | chr6_4:64241914-64241933 | Msa0993030:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr6_4:64241924-64241943 | None:intergenic | 35.0% | |
| TGTTGTGTGCTTTGTGAATA+AGG | + | chr6_4:64242107-64242126 | Msa0993030:intron | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr6_4:64242151-64242170 | Msa0993030:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr6_4:64242201-64242220 | Msa0993030:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr6_4:64242254-64242273 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr6_4:64242375-64242394 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr6_4:64241426-64241445 | Msa0993030:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr6_4:64241485-64241504 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr6_4:64241486-64241505 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | chr6_4:64241549-64241568 | Msa0993030:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | chr6_4:64241692-64241711 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr6_4:64241692-64241711 | Msa0993030:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr6_4:64241725-64241744 | Msa0993030:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr6_4:64241733-64241752 | Msa0993030:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr6_4:64241744-64241763 | Msa0993030:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr6_4:64241745-64241764 | Msa0993030:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | chr6_4:64241920-64241939 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | chr6_4:64241921-64241940 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr6_4:64241964-64241983 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr6_4:64242171-64242190 | Msa0993030:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr6_4:64242211-64242230 | Msa0993030:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr6_4:64242221-64242240 | Msa0993030:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr6_4:64242255-64242274 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr6_4:64242364-64242383 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr6_4:64242386-64242405 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr6_4:64241426-64241445 | Msa0993030:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr6_4:64241485-64241504 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr6_4:64241486-64241505 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | + | chr6_4:64241549-64241568 | Msa0993030:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | chr6_4:64241692-64241711 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr6_4:64241692-64241711 | Msa0993030:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr6_4:64241725-64241744 | Msa0993030:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr6_4:64241733-64241752 | Msa0993030:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr6_4:64241744-64241763 | Msa0993030:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr6_4:64241745-64241764 | Msa0993030:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | chr6_4:64241920-64241939 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | chr6_4:64241921-64241940 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr6_4:64241964-64241983 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr6_4:64242171-64242190 | Msa0993030:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr6_4:64242211-64242230 | Msa0993030:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr6_4:64242221-64242240 | Msa0993030:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr6_4:64242255-64242274 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr6_4:64242364-64242383 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr6_4:64242386-64242405 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr6_4:64241511-64241530 | Msa0993030:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | chr6_4:64241676-64241695 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | chr6_4:64241677-64241696 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr6_4:64241698-64241717 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr6_4:64241695-64241714 | Msa0993030:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr6_4:64241743-64241762 | Msa0993030:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr6_4:64241808-64241827 | Msa0993030:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr6_4:64241809-64241828 | Msa0993030:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr6_4:64241908-64241927 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr6_4:64241909-64241928 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | - | chr6_4:64241957-64241976 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr6_4:64241961-64241980 | Msa0993030:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr6_4:64241965-64241984 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr6_4:64241987-64242006 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr6_4:64242035-64242054 | Msa0993030:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr6_4:64242246-64242265 | Msa0993030:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr6_4:64242274-64242293 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr6_4:64242271-64242290 | Msa0993030:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr6_4:64242274-64242293 | Msa0993030:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr6_4:64242280-64242299 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr6_4:64242277-64242296 | Msa0993030:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr6_4:64242281-64242300 | Msa0993030:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr6_4:64242282-64242301 | Msa0993030:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | chr6_4:64242305-64242324 | Msa0993030:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | chr6_4:64242316-64242335 | Msa0993030:CDS | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | - | chr6_4:64242387-64242406 | None:intergenic | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr6_4:64241511-64241530 | Msa0993030:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | chr6_4:64241676-64241695 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | chr6_4:64241677-64241696 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr6_4:64241698-64241717 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr6_4:64241695-64241714 | Msa0993030:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr6_4:64241743-64241762 | Msa0993030:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr6_4:64241808-64241827 | Msa0993030:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr6_4:64241809-64241828 | Msa0993030:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr6_4:64241908-64241927 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr6_4:64241909-64241928 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | - | chr6_4:64241957-64241976 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr6_4:64241961-64241980 | Msa0993030:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr6_4:64241965-64241984 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr6_4:64241987-64242006 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr6_4:64242035-64242054 | Msa0993030:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr6_4:64242246-64242265 | Msa0993030:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr6_4:64242274-64242293 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr6_4:64242271-64242290 | Msa0993030:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr6_4:64242274-64242293 | Msa0993030:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr6_4:64242280-64242299 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr6_4:64242277-64242296 | Msa0993030:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr6_4:64242281-64242300 | Msa0993030:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr6_4:64242282-64242301 | Msa0993030:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | chr6_4:64242305-64242324 | Msa0993030:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | chr6_4:64242316-64242335 | Msa0993030:CDS | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | - | chr6_4:64242387-64242406 | None:intergenic | 45.0% | |
| !! | AGAGCATTGCCACGTCGTTA+TGG | - | chr6_4:64241327-64241346 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr6_4:64241480-64241499 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr6_4:64241481-64241500 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | + | chr6_4:64241935-64241954 | Msa0993030:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr6_4:64241981-64242000 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr6_4:64241980-64241999 | Msa0993030:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | chr6_4:64242297-64242316 | Msa0993030:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | chr6_4:64242315-64242334 | Msa0993030:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr6_4:64242349-64242368 | Msa0993030:CDS | 50.0% |
| !! | AGAGCATTGCCACGTCGTTA+TGG | - | chr6_4:64241327-64241346 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr6_4:64241480-64241499 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr6_4:64241481-64241500 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | + | chr6_4:64241935-64241954 | Msa0993030:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr6_4:64241981-64242000 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr6_4:64241980-64241999 | Msa0993030:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | chr6_4:64242297-64242316 | Msa0993030:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | chr6_4:64242315-64242334 | Msa0993030:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr6_4:64242349-64242368 | Msa0993030:CDS | 50.0% |
| GGCTTTCCACCATAACGACG+TGG | + | chr6_4:64241315-64241334 | Msa0993030:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | - | chr6_4:64241324-64241343 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr6_4:64241471-64241490 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | chr6_4:64241949-64241968 | Msa0993030:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr6_4:64242291-64242310 | Msa0993030:CDS | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | + | chr6_4:64241315-64241334 | Msa0993030:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | - | chr6_4:64241324-64241343 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr6_4:64241471-64241490 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | + | chr6_4:64241949-64241968 | Msa0993030:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr6_4:64242291-64242310 | Msa0993030:CDS | 55.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr6_4:64242327-64242346 | Msa0993030:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr6_4:64242334-64242353 | Msa0993030:CDS | 60.0% |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr6_4:64242327-64242346 | Msa0993030:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr6_4:64242334-64242353 | Msa0993030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 64241313 | 64242411 | 64241313 | ID=Msa0993030;Name=Msa0993030 |
| chr6_4 | mRNA | 64241313 | 64242411 | 64241313 | ID=Msa0993030-mRNA-1;Parent=Msa0993030;Name=Msa0993030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr6_4 | exon | 64241313 | 64241364 | 64241313 | ID=Msa0993030-mRNA-1:exon:12136;Parent=Msa0993030-mRNA-1 |
| chr6_4 | exon | 64241466 | 64241581 | 64241466 | ID=Msa0993030-mRNA-1:exon:12137;Parent=Msa0993030-mRNA-1 |
| chr6_4 | exon | 64241645 | 64242064 | 64241645 | ID=Msa0993030-mRNA-1:exon:12138;Parent=Msa0993030-mRNA-1 |
| chr6_4 | exon | 64242157 | 64242411 | 64242157 | ID=Msa0993030-mRNA-1:exon:12139;Parent=Msa0993030-mRNA-1 |
| chr6_4 | CDS | 64241313 | 64241364 | 64241313 | ID=Msa0993030-mRNA-1:cds;Parent=Msa0993030-mRNA-1 |
| chr6_4 | CDS | 64241466 | 64241581 | 64241466 | ID=Msa0993030-mRNA-1:cds;Parent=Msa0993030-mRNA-1 |
| chr6_4 | CDS | 64241645 | 64242064 | 64241645 | ID=Msa0993030-mRNA-1:cds;Parent=Msa0993030-mRNA-1 |
| chr6_4 | CDS | 64242157 | 64242411 | 64242157 | ID=Msa0993030-mRNA-1:cds;Parent=Msa0993030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
