Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0875260 | KEH43958.1 | 85.714 | 280 | 34 | 1 | 1 | 280 | 1 | 274 | 1.35e-180 | 508 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011170 | Msa0875260 | 0.807269 | 5.490147e-50 | -8.615850e-47 |
Msa0014710 | Msa0875260 | 0.812805 | 3.524105e-51 | -8.615850e-47 |
Msa0033420 | Msa0875260 | 0.904645 | 9.880625e-80 | -8.615850e-47 |
Msa0120300 | Msa0875260 | 0.800659 | 1.299209e-48 | -8.615850e-47 |
Msa0627670 | Msa0875260 | 0.884769 | 1.444710e-71 | -8.615850e-47 |
Msa0820850 | Msa0875260 | 0.800925 | 1.146413e-48 | -8.615850e-47 |
Msa0405370 | Msa0875260 | 0.812959 | 3.260857e-51 | -8.615850e-47 |
Msa0288100 | Msa0875260 | 0.807060 | 6.077582e-50 | -8.615850e-47 |
Msa0502160 | Msa0875260 | 0.831361 | 1.744144e-55 | -8.615850e-47 |
Msa0514760 | Msa0875260 | 0.914527 | 1.727167e-84 | -8.615850e-47 |
Msa0541200 | Msa0875260 | 0.851113 | 1.096321e-60 | -8.615850e-47 |
Msa0863890 | Msa0875260 | 0.910963 | 1.039950e-82 | -8.615850e-47 |
Msa0875260 | Msa0969520 | 0.808043 | 3.760125e-50 | -8.615850e-47 |
Msa0875260 | Msa0974070 | 0.804103 | 2.536483e-49 | -8.615850e-47 |
Msa0875260 | Msa0993030 | 0.933045 | 3.410113e-95 | -8.615850e-47 |
Msa0875260 | Msa1000890 | 0.806094 | 9.720480e-50 | -8.615850e-47 |
Msa0875260 | Msa1000900 | 0.800768 | 1.234523e-48 | -8.615850e-47 |
Msa0875260 | Msa1014540 | 0.826000 | 3.448964e-54 | -8.615850e-47 |
Msa0875260 | Msa1108650 | 0.870858 | 1.061860e-66 | -8.615850e-47 |
Msa0875260 | Msa1113170 | 0.812338 | 4.457403e-51 | -8.615850e-47 |
Msa0875260 | Msa1165540 | 0.827133 | 1.850632e-54 | -8.615850e-47 |
Msa0875260 | Msa1233890 | 0.806630 | 7.491684e-50 | -8.615850e-47 |
Msa0875260 | Msa1284680 | 0.816382 | 5.691081e-52 | -8.615850e-47 |
Msa0875260 | Msa1419030 | 0.982917 | 2.420952e-156 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0875260 | MtrunA17_Chr1g0206471 | 85.714 | 280 | 34 | 1 | 1 | 280 | 1 | 274 | 0.0 | 508 |
Msa0875260 | MtrunA17_Chr7g0270401 | 52.963 | 270 | 121 | 1 | 11 | 280 | 10 | 273 | 3.68e-100 | 294 |
Msa0875260 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 4 | 9 | 196 | 8 | 194 | 3.88e-53 | 171 |
Msa0875260 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.24e-39 | 137 |
Msa0875260 | MtrunA17_Chr1g0207921 | 42.254 | 71 | 41 | 0 | 208 | 278 | 127 | 197 | 1.24e-11 | 62.4 |
Msa0875260 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 7.31e-39 | 134 |
Msa0875260 | MtrunA17_Chr7g0234161 | 57.407 | 108 | 46 | 0 | 137 | 244 | 16 | 123 | 1.55e-38 | 131 |
Msa0875260 | MtrunA17_Chr3g0123031 | 55.046 | 109 | 31 | 2 | 172 | 280 | 1 | 91 | 1.43e-31 | 112 |
Msa0875260 | MtrunA17_Chr6g0473661 | 28.455 | 246 | 156 | 5 | 38 | 275 | 229 | 462 | 3.41e-25 | 104 |
Msa0875260 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 5.31e-23 | 92.8 |
Msa0875260 | MtrunA17_Chr8g0361581 | 38.961 | 77 | 47 | 0 | 202 | 278 | 92 | 168 | 2.58e-12 | 63.9 |
Msa0875260 | MtrunA17_Chr8g0359311 | 48.193 | 83 | 43 | 0 | 197 | 279 | 17 | 99 | 1.03e-22 | 89.7 |
Msa0875260 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 2.66e-21 | 85.9 |
Msa0875260 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 5.13e-21 | 84.7 |
Msa0875260 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 5.22e-14 | 67.0 |
Msa0875260 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 3.89e-13 | 68.9 |
Msa0875260 | MtrunA17_Chr6g0473651 | 29.730 | 148 | 85 | 3 | 116 | 256 | 23 | 158 | 1.25e-12 | 67.4 |
Msa0875260 | MtrunA17_Chr7g0237161 | 39.506 | 81 | 49 | 0 | 180 | 260 | 3 | 83 | 4.21e-13 | 63.5 |
Msa0875260 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 1.90e-12 | 62.8 |
Msa0875260 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 5.94e-11 | 59.7 |
Msa0875260 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 9.61e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 82 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 6_1:+11516263 | Msa0875260:CDS |
AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 6_1:-11516346 | None:intergenic |
TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 6_1:+11516726 | Msa0875260:CDS |
CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 6_1:-11516712 | None:intergenic |
ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 6_1:+11516270 | Msa0875260:CDS |
ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 6_1:-11516156 | None:intergenic |
GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 6_1:-11516796 | None:intergenic |
TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 6_1:+11516586 | Msa0875260:intron |
CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 6_1:+11516245 | Msa0875260:CDS |
GTAGATGTGGTGGACGAAAA+TGG | 0.365502 | 6_1:+11516646 | Msa0875260:CDS |
CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | 6_1:+11516385 | Msa0875260:CDS |
GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | 6_1:+11516371 | Msa0875260:CDS |
CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 6_1:+11515779 | Msa0875260:CDS |
TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 6_1:-11515913 | None:intergenic |
GTTGATCATCATATCGATTT+CGG | 0.376802 | 6_1:-11515926 | None:intergenic |
GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 6_1:+11516784 | Msa0875260:CDS |
CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 6_1:+11516397 | Msa0875260:CDS |
ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 6_1:+11516244 | Msa0875260:CDS |
CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 6_1:+11516717 | Msa0875260:CDS |
ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 6_1:-11515919 | None:intergenic |
CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 6_1:+11516198 | Msa0875260:CDS |
TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 6_1:+11516264 | Msa0875260:CDS |
ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 6_1:+11516303 | Msa0875260:CDS |
CCATGTATGTCCTATACTTA+AGG | 0.423908 | 6_1:-11515957 | None:intergenic |
ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 6_1:-11515914 | None:intergenic |
AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 6_1:+11516740 | Msa0875260:CDS |
TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 6_1:-11516341 | None:intergenic |
ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 6_1:+11516161 | Msa0875260:CDS |
AGAGCATTGCCACGTCGTTA+TGG | 0.443549 | 6_1:-11515760 | None:intergenic |
GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 6_1:-11516125 | None:intergenic |
CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 6_1:+11516706 | Msa0875260:CDS |
TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 6_1:-11516342 | None:intergenic |
GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 6_1:+11516237 | Msa0875260:CDS |
TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 6_1:+11516298 | Msa0875260:CDS |
CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 6_1:-11516131 | None:intergenic |
ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 6_1:+11515947 | Msa0875260:CDS |
GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 6_1:-11516398 | None:intergenic |
GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 6_1:+11516471 | Msa0875260:CDS |
TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 6_1:-11516420 | None:intergenic |
TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 6_1:-11516414 | None:intergenic |
TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 6_1:+11516279 | Msa0875260:CDS |
TGGACGAAAATGGCAACATA+TGG | 0.496896 | 6_1:+11516656 | Msa0875260:CDS |
ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 6_1:+11516716 | Msa0875260:CDS |
CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 6_1:+11516197 | Msa0875260:CDS |
CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 6_1:-11516706 | None:intergenic |
GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 6_1:+11516709 | Msa0875260:CDS |
GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 6_1:+11516769 | Msa0875260:CDS |
AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 6_1:+11516169 | Msa0875260:CDS |
GGATTTATTTAACAAAGGGC+TGG | 0.538099 | 6_1:+11516202 | Msa0875260:CDS |
CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 6_1:-11516197 | None:intergenic |
CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 6_1:+11516712 | Msa0875260:CDS |
AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 6_1:-11516807 | None:intergenic |
GATCCAACAATATGCTACTC+TGG | 0.547737 | 6_1:+11516128 | Msa0875260:CDS |
TCATATCGATTTCGGTCACT+GGG | 0.559152 | 6_1:-11515918 | None:intergenic |
TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 6_1:+11516274 | Msa0875260:CDS |
ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | 6_1:-11516390 | None:intergenic |
GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 6_1:-11515904 | None:intergenic |
GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | 6_1:-11516110 | None:intergenic |
CGATGAACCCTAAAATTCAT+CGG | 0.585773 | 6_1:-11516357 | None:intergenic |
GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | 6_1:-11516109 | None:intergenic |
GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 6_1:+11516762 | Msa0875260:CDS |
CCTTAAGTATAGGACATACA+TGG | 0.594115 | 6_1:+11515957 | Msa0875260:CDS |
TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 6_1:+11516732 | Msa0875260:CDS |
GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 6_1:-11516353 | None:intergenic |
GACGAATCACACAGAAGTAG+AGG | 0.600845 | 6_1:-11516819 | None:intergenic |
ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 6_1:-11516233 | None:intergenic |
GCATTGCCACGTCGTTATGG+TGG | 0.603259 | 6_1:-11515757 | None:intergenic |
GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 6_1:+11516179 | Msa0875260:CDS |
AAATCACGGGAAAACATCAT+CGG | 0.616708 | 6_1:-11516096 | None:intergenic |
AACTTCGATAGTAGATGTGG+TGG | 0.617921 | 6_1:+11516636 | Msa0875260:CDS |
CCAACAATATGCTACTCTGG+TGG | 0.620541 | 6_1:+11516131 | Msa0875260:CDS |
CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 6_1:-11516397 | None:intergenic |
AGAAACTTCGATAGTAGATG+TGG | 0.629208 | 6_1:+11516633 | Msa0875260:CDS |
TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 6_1:-11516354 | None:intergenic |
GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 6_1:+11515985 | Msa0875260:CDS |
ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 6_1:-11516818 | None:intergenic |
CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 6_1:+11516180 | Msa0875260:CDS |
AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 6_1:+11516751 | Msa0875260:CDS |
AAGGCCATTCATGCATGACG+AGG | 0.690981 | 6_1:+11516416 | Msa0875260:CDS |
GGCTTTCCACCATAACGACG+TGG | 0.712618 | 6_1:+11515751 | Msa0875260:CDS |
TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 6_1:+11516181 | Msa0875260:CDS |
CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 6_1:+11516750 | Msa0875260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr6_1:11516034-11516053 | None:intergenic | 15.0% |
!!! | TTTTAAAAAAGAATAACAGA+TGG | - | chr6_1:11516034-11516053 | None:intergenic | 15.0% |
!!! | GACATTTTTTATGTTTTTTC+AGG | + | chr6_1:11516570-11516589 | Msa0875260:intron | 20.0% |
!!! | GACATTTTTTATGTTTTTTC+AGG | + | chr6_1:11516570-11516589 | Msa0875260:intron | 20.0% |
!!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr6_1:11515844-11515863 | Msa0875260:intron | 25.0% |
! | AAAAAAGAATAACAGATGGA+AGG | - | chr6_1:11516030-11516049 | None:intergenic | 25.0% |
! | TGAAACAAATAACATTGTCA+GGG | - | chr6_1:11516057-11516076 | None:intergenic | 25.0% |
! | TTGAAACAAATAACATTGTC+AGG | - | chr6_1:11516058-11516077 | None:intergenic | 25.0% |
!! | ACAATGTTATTTGTTTCAAC+AGG | + | chr6_1:11516059-11516078 | Msa0875260:intron | 25.0% |
!! | CAATGTTATTTGTTTCAACA+GGG | + | chr6_1:11516060-11516079 | Msa0875260:intron | 25.0% |
!!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr6_1:11515844-11515863 | Msa0875260:intron | 25.0% |
! | AAAAAAGAATAACAGATGGA+AGG | - | chr6_1:11516030-11516049 | None:intergenic | 25.0% |
! | TGAAACAAATAACATTGTCA+GGG | - | chr6_1:11516057-11516076 | None:intergenic | 25.0% |
! | TTGAAACAAATAACATTGTC+AGG | - | chr6_1:11516058-11516077 | None:intergenic | 25.0% |
!! | ACAATGTTATTTGTTTCAAC+AGG | + | chr6_1:11516059-11516078 | Msa0875260:intron | 25.0% |
!! | CAATGTTATTTGTTTCAACA+GGG | + | chr6_1:11516060-11516079 | Msa0875260:intron | 25.0% |
ATCTTCAAACCGCAAAAATA+AGG | - | chr6_1:11515856-11515875 | None:intergenic | 30.0% | |
!! | GTTGATCATCATATCGATTT+CGG | - | chr6_1:11515929-11515948 | None:intergenic | 30.0% |
! | ACTTCAAACTGATTGTGTTT+TGG | - | chr6_1:11516159-11516178 | None:intergenic | 30.0% |
CAGGGGATTTATTTAACAAA+GGG | + | chr6_1:11516198-11516217 | Msa0875260:CDS | 30.0% | |
TTGGGTTACAATTGTGTTTA+TGG | + | chr6_1:11516263-11516282 | Msa0875260:CDS | 30.0% | |
TGGGTTACAATTGTGTTTAT+GGG | + | chr6_1:11516264-11516283 | Msa0875260:CDS | 30.0% | |
ACAATTGTGTTTATGGGAAA+TGG | + | chr6_1:11516270-11516289 | Msa0875260:CDS | 30.0% | |
TTGGTATTAGAATCAAGAAC+AGG | + | chr6_1:11516298-11516317 | Msa0875260:CDS | 30.0% | |
ATTAGAATCAAGAACAGGTT+TGG | + | chr6_1:11516303-11516322 | Msa0875260:CDS | 30.0% | |
!! | TGATGTTGAAAGTGGATTTT+TGG | + | chr6_1:11516479-11516498 | Msa0875260:CDS | 30.0% |
! | TGTTGTCTGTTTTGTGAATA+AGG | + | chr6_1:11516543-11516562 | Msa0875260:intron | 30.0% |
!!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr6_1:11516600-11516619 | Msa0875260:CDS | 30.0% |
ATCTTCAAACCGCAAAAATA+AGG | - | chr6_1:11515856-11515875 | None:intergenic | 30.0% | |
!! | GTTGATCATCATATCGATTT+CGG | - | chr6_1:11515929-11515948 | None:intergenic | 30.0% |
! | ACTTCAAACTGATTGTGTTT+TGG | - | chr6_1:11516159-11516178 | None:intergenic | 30.0% |
CAGGGGATTTATTTAACAAA+GGG | + | chr6_1:11516198-11516217 | Msa0875260:CDS | 30.0% | |
TTGGGTTACAATTGTGTTTA+TGG | + | chr6_1:11516263-11516282 | Msa0875260:CDS | 30.0% | |
TGGGTTACAATTGTGTTTAT+GGG | + | chr6_1:11516264-11516283 | Msa0875260:CDS | 30.0% | |
ACAATTGTGTTTATGGGAAA+TGG | + | chr6_1:11516270-11516289 | Msa0875260:CDS | 30.0% | |
TTGGTATTAGAATCAAGAAC+AGG | + | chr6_1:11516298-11516317 | Msa0875260:CDS | 30.0% | |
ATTAGAATCAAGAACAGGTT+TGG | + | chr6_1:11516303-11516322 | Msa0875260:CDS | 30.0% | |
!! | TGATGTTGAAAGTGGATTTT+TGG | + | chr6_1:11516479-11516498 | Msa0875260:CDS | 30.0% |
! | TGTTGTCTGTTTTGTGAATA+AGG | + | chr6_1:11516543-11516562 | Msa0875260:intron | 30.0% |
!!! | TGATATTGGTTTTGCTCAAA+TGG | + | chr6_1:11516600-11516619 | Msa0875260:CDS | 30.0% |
CTCTCTTACAACATGTTGAT+TGG | + | chr6_1:11515779-11515798 | Msa0875260:CDS | 35.0% | |
CCATGTATGTCCTATACTTA+AGG | - | chr6_1:11515960-11515979 | None:intergenic | 35.0% | |
CCTTAAGTATAGGACATACA+TGG | + | chr6_1:11515957-11515976 | Msa0875260:CDS | 35.0% | |
!!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr6_1:11515996-11516015 | Msa0875260:CDS | 35.0% |
AAATCACGGGAAAACATCAT+CGG | - | chr6_1:11516099-11516118 | None:intergenic | 35.0% | |
! | ATGATGTTTTCCCGTGATTT+TGG | + | chr6_1:11516099-11516118 | Msa0875260:CDS | 35.0% |
CCTTTGTTAAATAAATCCCC+TGG | - | chr6_1:11516200-11516219 | None:intergenic | 35.0% | |
CCAGGGGATTTATTTAACAA+AGG | + | chr6_1:11516197-11516216 | Msa0875260:CDS | 35.0% | |
GGATTTATTTAACAAAGGGC+TGG | + | chr6_1:11516202-11516221 | Msa0875260:CDS | 35.0% | |
ACTGCACTTTGTAGAAATCA+CGG | - | chr6_1:11516236-11516255 | None:intergenic | 35.0% | |
GATTTCTACAAAGTGCAGTT+TGG | + | chr6_1:11516237-11516256 | Msa0875260:CDS | 35.0% | |
TTGTGTTTATGGGAAATGGA+AGG | + | chr6_1:11516274-11516293 | Msa0875260:CDS | 35.0% | |
TTTATGGGAAATGGAAGGTT+TGG | + | chr6_1:11516279-11516298 | Msa0875260:CDS | 35.0% | |
!! | AAAATTCATCGGTGGGTTAA+AGG | - | chr6_1:11516349-11516368 | None:intergenic | 35.0% |
! | TTAACCCACCGATGAATTTT+AGG | + | chr6_1:11516349-11516368 | Msa0875260:CDS | 35.0% |
! | TAACCCACCGATGAATTTTA+GGG | + | chr6_1:11516350-11516369 | Msa0875260:CDS | 35.0% |
CGATGAACCCTAAAATTCAT+CGG | - | chr6_1:11516360-11516379 | None:intergenic | 35.0% | |
!! | TTTCAGGAACTTGCTGATAT+TGG | + | chr6_1:11516586-11516605 | Msa0875260:intron | 35.0% |
AGAAACTTCGATAGTAGATG+TGG | + | chr6_1:11516633-11516652 | Msa0875260:CDS | 35.0% | |
AGGATCCATCGAAAAACTAA+GGG | - | chr6_1:11516689-11516708 | None:intergenic | 35.0% | |
AGAAGTAGAGGGTTAAATTC+AGG | - | chr6_1:11516810-11516829 | None:intergenic | 35.0% | |
CTCTCTTACAACATGTTGAT+TGG | + | chr6_1:11515779-11515798 | Msa0875260:CDS | 35.0% | |
CCATGTATGTCCTATACTTA+AGG | - | chr6_1:11515960-11515979 | None:intergenic | 35.0% | |
CCTTAAGTATAGGACATACA+TGG | + | chr6_1:11515957-11515976 | Msa0875260:CDS | 35.0% | |
!!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr6_1:11515996-11516015 | Msa0875260:CDS | 35.0% |
AAATCACGGGAAAACATCAT+CGG | - | chr6_1:11516099-11516118 | None:intergenic | 35.0% | |
! | ATGATGTTTTCCCGTGATTT+TGG | + | chr6_1:11516099-11516118 | Msa0875260:CDS | 35.0% |
CCTTTGTTAAATAAATCCCC+TGG | - | chr6_1:11516200-11516219 | None:intergenic | 35.0% | |
CCAGGGGATTTATTTAACAA+AGG | + | chr6_1:11516197-11516216 | Msa0875260:CDS | 35.0% | |
GGATTTATTTAACAAAGGGC+TGG | + | chr6_1:11516202-11516221 | Msa0875260:CDS | 35.0% | |
ACTGCACTTTGTAGAAATCA+CGG | - | chr6_1:11516236-11516255 | None:intergenic | 35.0% | |
GATTTCTACAAAGTGCAGTT+TGG | + | chr6_1:11516237-11516256 | Msa0875260:CDS | 35.0% | |
TTGTGTTTATGGGAAATGGA+AGG | + | chr6_1:11516274-11516293 | Msa0875260:CDS | 35.0% | |
TTTATGGGAAATGGAAGGTT+TGG | + | chr6_1:11516279-11516298 | Msa0875260:CDS | 35.0% | |
!! | AAAATTCATCGGTGGGTTAA+AGG | - | chr6_1:11516349-11516368 | None:intergenic | 35.0% |
! | TTAACCCACCGATGAATTTT+AGG | + | chr6_1:11516349-11516368 | Msa0875260:CDS | 35.0% |
! | TAACCCACCGATGAATTTTA+GGG | + | chr6_1:11516350-11516369 | Msa0875260:CDS | 35.0% |
CGATGAACCCTAAAATTCAT+CGG | - | chr6_1:11516360-11516379 | None:intergenic | 35.0% | |
!! | TTTCAGGAACTTGCTGATAT+TGG | + | chr6_1:11516586-11516605 | Msa0875260:intron | 35.0% |
AGAAACTTCGATAGTAGATG+TGG | + | chr6_1:11516633-11516652 | Msa0875260:CDS | 35.0% | |
AGGATCCATCGAAAAACTAA+GGG | - | chr6_1:11516689-11516708 | None:intergenic | 35.0% | |
AGAAGTAGAGGGTTAAATTC+AGG | - | chr6_1:11516810-11516829 | None:intergenic | 35.0% | |
TGCGGTTTGAAGATGATGTT+TGG | + | chr6_1:11515862-11515881 | Msa0875260:intron | 40.0% | |
!! | TCATATCGATTTCGGTCACT+GGG | - | chr6_1:11515921-11515940 | None:intergenic | 40.0% |
!! | ATCATATCGATTTCGGTCAC+TGG | - | chr6_1:11515922-11515941 | None:intergenic | 40.0% |
GTTGACGTTGAATATGTGTG+TGG | + | chr6_1:11515985-11516004 | Msa0875260:CDS | 40.0% | |
GAGTAGCATATTGTTGGATC+TGG | - | chr6_1:11516128-11516147 | None:intergenic | 40.0% | |
GATCCAACAATATGCTACTC+TGG | + | chr6_1:11516128-11516147 | Msa0875260:CDS | 40.0% | |
! | ACACAATCAGTTTGAAGTGC+TGG | + | chr6_1:11516161-11516180 | Msa0875260:CDS | 40.0% |
!! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr6_1:11516169-11516188 | Msa0875260:CDS | 40.0% |
CTGGTTGAAAGGAATAACCA+GGG | + | chr6_1:11516180-11516199 | Msa0875260:CDS | 40.0% | |
TGGTTGAAAGGAATAACCAG+GGG | + | chr6_1:11516181-11516200 | Msa0875260:CDS | 40.0% | |
GAACCCTAAAATTCATCGGT+GGG | - | chr6_1:11516356-11516375 | None:intergenic | 40.0% | |
TGAACCCTAAAATTCATCGG+TGG | - | chr6_1:11516357-11516376 | None:intergenic | 40.0% | |
CCTTGGAACAAACCAATCAA+GGG | - | chr6_1:11516400-11516419 | None:intergenic | 40.0% | |
!! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr6_1:11516606-11516625 | Msa0875260:CDS | 40.0% |
AACTTCGATAGTAGATGTGG+TGG | + | chr6_1:11516636-11516655 | Msa0875260:CDS | 40.0% | |
TGGACGAAAATGGCAACATA+TGG | + | chr6_1:11516656-11516675 | Msa0875260:CDS | 40.0% | |
CAGGATCCATCGAAAAACTA+AGG | - | chr6_1:11516690-11516709 | None:intergenic | 40.0% | |
GTTAAATTCAGGCCAATTGC+AGG | - | chr6_1:11516799-11516818 | None:intergenic | 40.0% | |
ACGAATCACACAGAAGTAGA+GGG | - | chr6_1:11516821-11516840 | None:intergenic | 40.0% | |
TGCGGTTTGAAGATGATGTT+TGG | + | chr6_1:11515862-11515881 | Msa0875260:intron | 40.0% | |
!! | TCATATCGATTTCGGTCACT+GGG | - | chr6_1:11515921-11515940 | None:intergenic | 40.0% |
!! | ATCATATCGATTTCGGTCAC+TGG | - | chr6_1:11515922-11515941 | None:intergenic | 40.0% |
GTTGACGTTGAATATGTGTG+TGG | + | chr6_1:11515985-11516004 | Msa0875260:CDS | 40.0% | |
GAGTAGCATATTGTTGGATC+TGG | - | chr6_1:11516128-11516147 | None:intergenic | 40.0% | |
GATCCAACAATATGCTACTC+TGG | + | chr6_1:11516128-11516147 | Msa0875260:CDS | 40.0% | |
! | ACACAATCAGTTTGAAGTGC+TGG | + | chr6_1:11516161-11516180 | Msa0875260:CDS | 40.0% |
!! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr6_1:11516169-11516188 | Msa0875260:CDS | 40.0% |
CTGGTTGAAAGGAATAACCA+GGG | + | chr6_1:11516180-11516199 | Msa0875260:CDS | 40.0% | |
TGGTTGAAAGGAATAACCAG+GGG | + | chr6_1:11516181-11516200 | Msa0875260:CDS | 40.0% | |
GAACCCTAAAATTCATCGGT+GGG | - | chr6_1:11516356-11516375 | None:intergenic | 40.0% | |
TGAACCCTAAAATTCATCGG+TGG | - | chr6_1:11516357-11516376 | None:intergenic | 40.0% | |
CCTTGGAACAAACCAATCAA+GGG | - | chr6_1:11516400-11516419 | None:intergenic | 40.0% | |
!! | TGGTTTTGCTCAAATGGCTT+TGG | + | chr6_1:11516606-11516625 | Msa0875260:CDS | 40.0% |
AACTTCGATAGTAGATGTGG+TGG | + | chr6_1:11516636-11516655 | Msa0875260:CDS | 40.0% | |
TGGACGAAAATGGCAACATA+TGG | + | chr6_1:11516656-11516675 | Msa0875260:CDS | 40.0% | |
CAGGATCCATCGAAAAACTA+AGG | - | chr6_1:11516690-11516709 | None:intergenic | 40.0% | |
GTTAAATTCAGGCCAATTGC+AGG | - | chr6_1:11516799-11516818 | None:intergenic | 40.0% | |
ACGAATCACACAGAAGTAGA+GGG | - | chr6_1:11516821-11516840 | None:intergenic | 40.0% | |
ACGAGCTACGCCTTAAGTAT+AGG | + | chr6_1:11515947-11515966 | Msa0875260:CDS | 45.0% | |
GATCTGGTCTCCAAAATCAC+GGG | - | chr6_1:11516112-11516131 | None:intergenic | 45.0% | |
GGATCTGGTCTCCAAAATCA+CGG | - | chr6_1:11516113-11516132 | None:intergenic | 45.0% | |
CCACCAGAGTAGCATATTGT+TGG | - | chr6_1:11516134-11516153 | None:intergenic | 45.0% | |
CCAACAATATGCTACTCTGG+TGG | + | chr6_1:11516131-11516150 | Msa0875260:CDS | 45.0% | |
GCTGGTTGAAAGGAATAACC+AGG | + | chr6_1:11516179-11516198 | Msa0875260:CDS | 45.0% | |
!! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr6_1:11516244-11516263 | Msa0875260:CDS | 45.0% |
!! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr6_1:11516245-11516264 | Msa0875260:CDS | 45.0% |
!! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr6_1:11516344-11516363 | None:intergenic | 45.0% |
!! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr6_1:11516345-11516364 | None:intergenic | 45.0% |
ACAAACCAATCAAGGGTGAC+CGG | - | chr6_1:11516393-11516412 | None:intergenic | 45.0% | |
!! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr6_1:11516397-11516416 | Msa0875260:CDS | 45.0% |
GCCTTGGAACAAACCAATCA+AGG | - | chr6_1:11516401-11516420 | None:intergenic | 45.0% | |
TTCACCTCGTCATGCATGAA+TGG | - | chr6_1:11516423-11516442 | None:intergenic | 45.0% | |
GCTGTTGCTGATGTTGAAAG+TGG | + | chr6_1:11516471-11516490 | Msa0875260:CDS | 45.0% | |
!! | GTAGATGTGGTGGACGAAAA+TGG | + | chr6_1:11516646-11516665 | Msa0875260:CDS | 45.0% |
!! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr6_1:11516681-11516700 | Msa0875260:CDS | 45.0% |
! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr6_1:11516709-11516728 | None:intergenic | 45.0% |
CCTGCTCCAAACTTCAAGAT+TGG | + | chr6_1:11516706-11516725 | Msa0875260:CDS | 45.0% | |
GCTCCAAACTTCAAGATTGG+AGG | + | chr6_1:11516709-11516728 | Msa0875260:CDS | 45.0% | |
CCACCTCCAATCTTGAAGTT+TGG | - | chr6_1:11516715-11516734 | None:intergenic | 45.0% | |
CCAAACTTCAAGATTGGAGG+TGG | + | chr6_1:11516712-11516731 | Msa0875260:CDS | 45.0% | |
ACTTCAAGATTGGAGGTGGT+TGG | + | chr6_1:11516716-11516735 | Msa0875260:CDS | 45.0% | |
CTTCAAGATTGGAGGTGGTT+GGG | + | chr6_1:11516717-11516736 | Msa0875260:CDS | 45.0% | |
AGCTTATGGTCAAGGCTAGA+AGG | + | chr6_1:11516740-11516759 | Msa0875260:CDS | 45.0% | |
AAGGCTAGAAGGTTCACAGA+GGG | + | chr6_1:11516751-11516770 | Msa0875260:CDS | 45.0% | |
GACGAATCACACAGAAGTAG+AGG | - | chr6_1:11516822-11516841 | None:intergenic | 45.0% | |
ACGAGCTACGCCTTAAGTAT+AGG | + | chr6_1:11515947-11515966 | Msa0875260:CDS | 45.0% | |
GATCTGGTCTCCAAAATCAC+GGG | - | chr6_1:11516112-11516131 | None:intergenic | 45.0% | |
GGATCTGGTCTCCAAAATCA+CGG | - | chr6_1:11516113-11516132 | None:intergenic | 45.0% | |
CCACCAGAGTAGCATATTGT+TGG | - | chr6_1:11516134-11516153 | None:intergenic | 45.0% | |
CCAACAATATGCTACTCTGG+TGG | + | chr6_1:11516131-11516150 | Msa0875260:CDS | 45.0% | |
GCTGGTTGAAAGGAATAACC+AGG | + | chr6_1:11516179-11516198 | Msa0875260:CDS | 45.0% | |
!! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr6_1:11516244-11516263 | Msa0875260:CDS | 45.0% |
!! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr6_1:11516245-11516264 | Msa0875260:CDS | 45.0% |
!! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr6_1:11516344-11516363 | None:intergenic | 45.0% |
!! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr6_1:11516345-11516364 | None:intergenic | 45.0% |
ACAAACCAATCAAGGGTGAC+CGG | - | chr6_1:11516393-11516412 | None:intergenic | 45.0% | |
!! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr6_1:11516397-11516416 | Msa0875260:CDS | 45.0% |
GCCTTGGAACAAACCAATCA+AGG | - | chr6_1:11516401-11516420 | None:intergenic | 45.0% | |
TTCACCTCGTCATGCATGAA+TGG | - | chr6_1:11516423-11516442 | None:intergenic | 45.0% | |
GCTGTTGCTGATGTTGAAAG+TGG | + | chr6_1:11516471-11516490 | Msa0875260:CDS | 45.0% | |
!! | GTAGATGTGGTGGACGAAAA+TGG | + | chr6_1:11516646-11516665 | Msa0875260:CDS | 45.0% |
!! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr6_1:11516681-11516700 | Msa0875260:CDS | 45.0% |
! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr6_1:11516709-11516728 | None:intergenic | 45.0% |
CCTGCTCCAAACTTCAAGAT+TGG | + | chr6_1:11516706-11516725 | Msa0875260:CDS | 45.0% | |
GCTCCAAACTTCAAGATTGG+AGG | + | chr6_1:11516709-11516728 | Msa0875260:CDS | 45.0% | |
CCACCTCCAATCTTGAAGTT+TGG | - | chr6_1:11516715-11516734 | None:intergenic | 45.0% | |
CCAAACTTCAAGATTGGAGG+TGG | + | chr6_1:11516712-11516731 | Msa0875260:CDS | 45.0% | |
ACTTCAAGATTGGAGGTGGT+TGG | + | chr6_1:11516716-11516735 | Msa0875260:CDS | 45.0% | |
CTTCAAGATTGGAGGTGGTT+GGG | + | chr6_1:11516717-11516736 | Msa0875260:CDS | 45.0% | |
AGCTTATGGTCAAGGCTAGA+AGG | + | chr6_1:11516740-11516759 | Msa0875260:CDS | 45.0% | |
AAGGCTAGAAGGTTCACAGA+GGG | + | chr6_1:11516751-11516770 | Msa0875260:CDS | 45.0% | |
GACGAATCACACAGAAGTAG+AGG | - | chr6_1:11516822-11516841 | None:intergenic | 45.0% | |
!! | AGAGCATTGCCACGTCGTTA+TGG | - | chr6_1:11515763-11515782 | None:intergenic | 50.0% |
TCGATTTCGGTCACTGGGTT+GGG | - | chr6_1:11515916-11515935 | None:intergenic | 50.0% | |
! | ATCGATTTCGGTCACTGGGT+TGG | - | chr6_1:11515917-11515936 | None:intergenic | 50.0% |
GGTTCATCGCAATGCTGTTC+CGG | + | chr6_1:11516371-11516390 | Msa0875260:CDS | 50.0% | |
TCGTCATGCATGAATGGCCT+TGG | - | chr6_1:11516417-11516436 | None:intergenic | 50.0% | |
AAGGCCATTCATGCATGACG+AGG | + | chr6_1:11516416-11516435 | Msa0875260:CDS | 50.0% | |
TGGTTGGGAGCTTATGGTCA+AGG | + | chr6_1:11516732-11516751 | Msa0875260:CDS | 50.0% | |
CAAGGCTAGAAGGTTCACAG+AGG | + | chr6_1:11516750-11516769 | Msa0875260:CDS | 50.0% | |
! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr6_1:11516784-11516803 | Msa0875260:CDS | 50.0% |
!! | AGAGCATTGCCACGTCGTTA+TGG | - | chr6_1:11515763-11515782 | None:intergenic | 50.0% |
TCGATTTCGGTCACTGGGTT+GGG | - | chr6_1:11515916-11515935 | None:intergenic | 50.0% | |
! | ATCGATTTCGGTCACTGGGT+TGG | - | chr6_1:11515917-11515936 | None:intergenic | 50.0% |
GGTTCATCGCAATGCTGTTC+CGG | + | chr6_1:11516371-11516390 | Msa0875260:CDS | 50.0% | |
TCGTCATGCATGAATGGCCT+TGG | - | chr6_1:11516417-11516436 | None:intergenic | 50.0% | |
AAGGCCATTCATGCATGACG+AGG | + | chr6_1:11516416-11516435 | Msa0875260:CDS | 50.0% | |
TGGTTGGGAGCTTATGGTCA+AGG | + | chr6_1:11516732-11516751 | Msa0875260:CDS | 50.0% | |
CAAGGCTAGAAGGTTCACAG+AGG | + | chr6_1:11516750-11516769 | Msa0875260:CDS | 50.0% | |
! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr6_1:11516784-11516803 | Msa0875260:CDS | 50.0% |
GGCTTTCCACCATAACGACG+TGG | + | chr6_1:11515751-11515770 | Msa0875260:CDS | 55.0% | |
GCATTGCCACGTCGTTATGG+TGG | - | chr6_1:11515760-11515779 | None:intergenic | 55.0% | |
! | GTCACTGGGTTGGGATCAAG+CGG | - | chr6_1:11515907-11515926 | None:intergenic | 55.0% |
CTGTTCCGGTCACCCTTGAT+TGG | + | chr6_1:11516385-11516404 | Msa0875260:CDS | 55.0% | |
TGGAGGTGGTTGGGAGCTTA+TGG | + | chr6_1:11516726-11516745 | Msa0875260:CDS | 55.0% | |
GGCTTTCCACCATAACGACG+TGG | + | chr6_1:11515751-11515770 | Msa0875260:CDS | 55.0% | |
GCATTGCCACGTCGTTATGG+TGG | - | chr6_1:11515760-11515779 | None:intergenic | 55.0% | |
! | GTCACTGGGTTGGGATCAAG+CGG | - | chr6_1:11515907-11515926 | None:intergenic | 55.0% |
CTGTTCCGGTCACCCTTGAT+TGG | + | chr6_1:11516385-11516404 | Msa0875260:CDS | 55.0% | |
TGGAGGTGGTTGGGAGCTTA+TGG | + | chr6_1:11516726-11516745 | Msa0875260:CDS | 55.0% | |
! | GTTCACAGAGGGTGCACGTG+TGG | + | chr6_1:11516762-11516781 | Msa0875260:CDS | 60.0% |
! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr6_1:11516769-11516788 | Msa0875260:CDS | 60.0% |
! | GTTCACAGAGGGTGCACGTG+TGG | + | chr6_1:11516762-11516781 | Msa0875260:CDS | 60.0% |
! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr6_1:11516769-11516788 | Msa0875260:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 11515749 | 11516846 | 11515749 | ID=Msa0875260;Name=Msa0875260 |
chr6_1 | mRNA | 11515749 | 11516846 | 11515749 | ID=Msa0875260-mRNA-1;Parent=Msa0875260;Name=Msa0875260-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.5|1|1|4|0|280 |
chr6_1 | exon | 11515749 | 11515800 | 11515749 | ID=Msa0875260-mRNA-1:exon:3536;Parent=Msa0875260-mRNA-1 |
chr6_1 | exon | 11515902 | 11516017 | 11515902 | ID=Msa0875260-mRNA-1:exon:3537;Parent=Msa0875260-mRNA-1 |
chr6_1 | exon | 11516081 | 11516500 | 11516081 | ID=Msa0875260-mRNA-1:exon:3538;Parent=Msa0875260-mRNA-1 |
chr6_1 | exon | 11516592 | 11516846 | 11516592 | ID=Msa0875260-mRNA-1:exon:3539;Parent=Msa0875260-mRNA-1 |
chr6_1 | CDS | 11515749 | 11515800 | 11515749 | ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1 |
chr6_1 | CDS | 11515902 | 11516017 | 11515902 | ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1 |
chr6_1 | CDS | 11516081 | 11516500 | 11516081 | ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1 |
chr6_1 | CDS | 11516592 | 11516846 | 11516592 | ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1 |
Gene Sequence |
Protein sequence |