AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875260 MtrunA17_Chr1g0206471 85.714 280 34 1 1 280 1 274 0.0 508
Msa0875260 MtrunA17_Chr7g0270401 52.963 270 121 1 11 280 10 273 3.68e-100 294
Msa0875260 MtrunA17_Chr1g0193281 46.632 193 92 4 9 196 8 194 3.88e-53 171
Msa0875260 MtrunA17_Chr1g0207921 56.250 112 45 1 13 124 9 116 1.24e-39 137
Msa0875260 MtrunA17_Chr1g0207921 42.254 71 41 0 208 278 127 197 1.24e-11 62.4
Msa0875260 MtrunA17_Chr7g0228461 56.780 118 50 1 60 176 1 118 7.31e-39 134
Msa0875260 MtrunA17_Chr7g0234161 57.407 108 46 0 137 244 16 123 1.55e-38 131
Msa0875260 MtrunA17_Chr3g0123031 55.046 109 31 2 172 280 1 91 1.43e-31 112
Msa0875260 MtrunA17_Chr6g0473661 28.455 246 156 5 38 275 229 462 3.41e-25 104
Msa0875260 MtrunA17_Chr8g0361581 53.571 84 33 1 9 92 8 85 5.31e-23 92.8
Msa0875260 MtrunA17_Chr8g0361581 38.961 77 47 0 202 278 92 168 2.58e-12 63.9
Msa0875260 MtrunA17_Chr8g0359311 48.193 83 43 0 197 279 17 99 1.03e-22 89.7
Msa0875260 MtrunA17_Chr5g0421721 51.899 79 32 1 16 94 15 87 2.66e-21 85.9
Msa0875260 MtrunA17_Chr5g0423431 51.852 81 33 1 6 86 5 79 5.13e-21 84.7
Msa0875260 MtrunA17_Chr3g0083241 61.538 52 20 0 1 52 54 105 5.22e-14 67.0
Msa0875260 MtrunA17_Chr6g0473651 28.767 146 92 2 61 206 228 361 3.89e-13 68.9
Msa0875260 MtrunA17_Chr6g0473651 29.730 148 85 3 116 256 23 158 1.25e-12 67.4
Msa0875260 MtrunA17_Chr7g0237161 39.506 81 49 0 180 260 3 83 4.21e-13 63.5
Msa0875260 MtrunA17_Chr4g0054601 32.099 81 55 0 72 152 2 82 1.90e-12 62.8
Msa0875260 MtrunA17_Chr1g0151111 37.838 74 46 0 202 275 22 95 5.94e-11 59.7
Msa0875260 MtrunA17_Chr1g0178231 36.486 74 47 0 202 275 21 94 9.61e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 82 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTACAATTGTGTTTA+TGG 0.148969 6_1:+11516263 Msa0875260:CDS
AAAATTCATCGGTGGGTTAA+AGG 0.246863 6_1:-11516346 None:intergenic
TGGAGGTGGTTGGGAGCTTA+TGG 0.295437 6_1:+11516726 Msa0875260:CDS
CCACCTCCAATCTTGAAGTT+TGG 0.329867 6_1:-11516712 None:intergenic
ACAATTGTGTTTATGGGAAA+TGG 0.340774 6_1:+11516270 Msa0875260:CDS
ACTTCAAACTGATTGTGTTT+TGG 0.342169 6_1:-11516156 None:intergenic
GTTAAATTCAGGCCAATTGC+AGG 0.344120 6_1:-11516796 None:intergenic
TTTCAGGAACTTGCTGATAT+TGG 0.344335 6_1:+11516586 Msa0875260:intron
CAAAGTGCAGTTTGGTGCTT+GGG 0.362374 6_1:+11516245 Msa0875260:CDS
GTAGATGTGGTGGACGAAAA+TGG 0.365502 6_1:+11516646 Msa0875260:CDS
CTGTTCCGGTCACCCTTGAT+TGG 0.370840 6_1:+11516385 Msa0875260:CDS
GGTTCATCGCAATGCTGTTC+CGG 0.371354 6_1:+11516371 Msa0875260:CDS
CTCTCTTACAACATGTTGAT+TGG 0.371414 6_1:+11515779 Msa0875260:CDS
TCGATTTCGGTCACTGGGTT+GGG 0.371780 6_1:-11515913 None:intergenic
GTTGATCATCATATCGATTT+CGG 0.376802 6_1:-11515926 None:intergenic
GTGATTGGTGCTCCTGCAAT+TGG 0.381103 6_1:+11516784 Msa0875260:CDS
CCCTTGATTGGTTTGTTCCA+AGG 0.394705 6_1:+11516397 Msa0875260:CDS
ACAAAGTGCAGTTTGGTGCT+TGG 0.396984 6_1:+11516244 Msa0875260:CDS
CTTCAAGATTGGAGGTGGTT+GGG 0.399857 6_1:+11516717 Msa0875260:CDS
ATCATATCGATTTCGGTCAC+TGG 0.403353 6_1:-11515919 None:intergenic
CAGGGGATTTATTTAACAAA+GGG 0.413986 6_1:+11516198 Msa0875260:CDS
TGGGTTACAATTGTGTTTAT+GGG 0.417760 6_1:+11516264 Msa0875260:CDS
ATTAGAATCAAGAACAGGTT+TGG 0.423064 6_1:+11516303 Msa0875260:CDS
CCATGTATGTCCTATACTTA+AGG 0.423908 6_1:-11515957 None:intergenic
ATCGATTTCGGTCACTGGGT+TGG 0.430519 6_1:-11515914 None:intergenic
AGCTTATGGTCAAGGCTAGA+AGG 0.433486 6_1:+11516740 Msa0875260:CDS
TCATCGGTGGGTTAAAGGTT+GGG 0.437933 6_1:-11516341 None:intergenic
ACACAATCAGTTTGAAGTGC+TGG 0.440259 6_1:+11516161 Msa0875260:CDS
AGAGCATTGCCACGTCGTTA+TGG 0.443549 6_1:-11515760 None:intergenic
GAGTAGCATATTGTTGGATC+TGG 0.446877 6_1:-11516125 None:intergenic
CCTGCTCCAAACTTCAAGAT+TGG 0.453032 6_1:+11516706 Msa0875260:CDS
TTCATCGGTGGGTTAAAGGT+TGG 0.459097 6_1:-11516342 None:intergenic
GATTTCTACAAAGTGCAGTT+TGG 0.459805 6_1:+11516237 Msa0875260:CDS
TTGGTATTAGAATCAAGAAC+AGG 0.461579 6_1:+11516298 Msa0875260:CDS
CCACCAGAGTAGCATATTGT+TGG 0.466976 6_1:-11516131 None:intergenic
ACGAGCTACGCCTTAAGTAT+AGG 0.470020 6_1:+11515947 Msa0875260:CDS
GCCTTGGAACAAACCAATCA+AGG 0.473669 6_1:-11516398 None:intergenic
GCTGTTGCTGATGTTGAAAG+TGG 0.476443 6_1:+11516471 Msa0875260:CDS
TTCACCTCGTCATGCATGAA+TGG 0.476750 6_1:-11516420 None:intergenic
TCGTCATGCATGAATGGCCT+TGG 0.477431 6_1:-11516414 None:intergenic
TTTATGGGAAATGGAAGGTT+TGG 0.478943 6_1:+11516279 Msa0875260:CDS
TGGACGAAAATGGCAACATA+TGG 0.496896 6_1:+11516656 Msa0875260:CDS
ACTTCAAGATTGGAGGTGGT+TGG 0.500102 6_1:+11516716 Msa0875260:CDS
CCAGGGGATTTATTTAACAA+AGG 0.503834 6_1:+11516197 Msa0875260:CDS
CCAATCTTGAAGTTTGGAGC+AGG 0.514742 6_1:-11516706 None:intergenic
GCTCCAAACTTCAAGATTGG+AGG 0.519735 6_1:+11516709 Msa0875260:CDS
GAGGGTGCACGTGTGGTGAT+TGG 0.520385 6_1:+11516769 Msa0875260:CDS
AGTTTGAAGTGCTGGTTGAA+AGG 0.537719 6_1:+11516169 Msa0875260:CDS
GGATTTATTTAACAAAGGGC+TGG 0.538099 6_1:+11516202 Msa0875260:CDS
CCTTTGTTAAATAAATCCCC+TGG 0.540457 6_1:-11516197 None:intergenic
CCAAACTTCAAGATTGGAGG+TGG 0.541019 6_1:+11516712 Msa0875260:CDS
AGAAGTAGAGGGTTAAATTC+AGG 0.545060 6_1:-11516807 None:intergenic
GATCCAACAATATGCTACTC+TGG 0.547737 6_1:+11516128 Msa0875260:CDS
TCATATCGATTTCGGTCACT+GGG 0.559152 6_1:-11515918 None:intergenic
TTGTGTTTATGGGAAATGGA+AGG 0.564520 6_1:+11516274 Msa0875260:CDS
ACAAACCAATCAAGGGTGAC+CGG 0.568513 6_1:-11516390 None:intergenic
GTCACTGGGTTGGGATCAAG+CGG 0.568704 6_1:-11515904 None:intergenic
GGATCTGGTCTCCAAAATCA+CGG 0.574662 6_1:-11516110 None:intergenic
CGATGAACCCTAAAATTCAT+CGG 0.585773 6_1:-11516357 None:intergenic
GATCTGGTCTCCAAAATCAC+GGG 0.590274 6_1:-11516109 None:intergenic
GTTCACAGAGGGTGCACGTG+TGG 0.592341 6_1:+11516762 Msa0875260:CDS
CCTTAAGTATAGGACATACA+TGG 0.594115 6_1:+11515957 Msa0875260:CDS
TGGTTGGGAGCTTATGGTCA+AGG 0.599583 6_1:+11516732 Msa0875260:CDS
GAACCCTAAAATTCATCGGT+GGG 0.600776 6_1:-11516353 None:intergenic
GACGAATCACACAGAAGTAG+AGG 0.600845 6_1:-11516819 None:intergenic
ACTGCACTTTGTAGAAATCA+CGG 0.602302 6_1:-11516233 None:intergenic
GCATTGCCACGTCGTTATGG+TGG 0.603259 6_1:-11515757 None:intergenic
GCTGGTTGAAAGGAATAACC+AGG 0.605399 6_1:+11516179 Msa0875260:CDS
AAATCACGGGAAAACATCAT+CGG 0.616708 6_1:-11516096 None:intergenic
AACTTCGATAGTAGATGTGG+TGG 0.617921 6_1:+11516636 Msa0875260:CDS
CCAACAATATGCTACTCTGG+TGG 0.620541 6_1:+11516131 Msa0875260:CDS
CCTTGGAACAAACCAATCAA+GGG 0.627308 6_1:-11516397 None:intergenic
AGAAACTTCGATAGTAGATG+TGG 0.629208 6_1:+11516633 Msa0875260:CDS
TGAACCCTAAAATTCATCGG+TGG 0.633118 6_1:-11516354 None:intergenic
GTTGACGTTGAATATGTGTG+TGG 0.666000 6_1:+11515985 Msa0875260:CDS
ACGAATCACACAGAAGTAGA+GGG 0.671018 6_1:-11516818 None:intergenic
CTGGTTGAAAGGAATAACCA+GGG 0.673257 6_1:+11516180 Msa0875260:CDS
AAGGCTAGAAGGTTCACAGA+GGG 0.686944 6_1:+11516751 Msa0875260:CDS
AAGGCCATTCATGCATGACG+AGG 0.690981 6_1:+11516416 Msa0875260:CDS
GGCTTTCCACCATAACGACG+TGG 0.712618 6_1:+11515751 Msa0875260:CDS
TGGTTGAAAGGAATAACCAG+GGG 0.751338 6_1:+11516181 Msa0875260:CDS
CAAGGCTAGAAGGTTCACAG+AGG 0.784898 6_1:+11516750 Msa0875260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAAGAATAACAGA+TGG - chr6_1:11516034-11516053 None:intergenic 15.0%
!!! TTTTAAAAAAGAATAACAGA+TGG - chr6_1:11516034-11516053 None:intergenic 15.0%
!!! GACATTTTTTATGTTTTTTC+AGG + chr6_1:11516570-11516589 Msa0875260:intron 20.0%
!!! GACATTTTTTATGTTTTTTC+AGG + chr6_1:11516570-11516589 Msa0875260:intron 20.0%
!!! ATACAGTTTCCTTATTTTTG+CGG + chr6_1:11515844-11515863 Msa0875260:intron 25.0%
! AAAAAAGAATAACAGATGGA+AGG - chr6_1:11516030-11516049 None:intergenic 25.0%
! TGAAACAAATAACATTGTCA+GGG - chr6_1:11516057-11516076 None:intergenic 25.0%
! TTGAAACAAATAACATTGTC+AGG - chr6_1:11516058-11516077 None:intergenic 25.0%
!! ACAATGTTATTTGTTTCAAC+AGG + chr6_1:11516059-11516078 Msa0875260:intron 25.0%
!! CAATGTTATTTGTTTCAACA+GGG + chr6_1:11516060-11516079 Msa0875260:intron 25.0%
!!! ATACAGTTTCCTTATTTTTG+CGG + chr6_1:11515844-11515863 Msa0875260:intron 25.0%
! AAAAAAGAATAACAGATGGA+AGG - chr6_1:11516030-11516049 None:intergenic 25.0%
! TGAAACAAATAACATTGTCA+GGG - chr6_1:11516057-11516076 None:intergenic 25.0%
! TTGAAACAAATAACATTGTC+AGG - chr6_1:11516058-11516077 None:intergenic 25.0%
!! ACAATGTTATTTGTTTCAAC+AGG + chr6_1:11516059-11516078 Msa0875260:intron 25.0%
!! CAATGTTATTTGTTTCAACA+GGG + chr6_1:11516060-11516079 Msa0875260:intron 25.0%
ATCTTCAAACCGCAAAAATA+AGG - chr6_1:11515856-11515875 None:intergenic 30.0%
!! GTTGATCATCATATCGATTT+CGG - chr6_1:11515929-11515948 None:intergenic 30.0%
! ACTTCAAACTGATTGTGTTT+TGG - chr6_1:11516159-11516178 None:intergenic 30.0%
CAGGGGATTTATTTAACAAA+GGG + chr6_1:11516198-11516217 Msa0875260:CDS 30.0%
TTGGGTTACAATTGTGTTTA+TGG + chr6_1:11516263-11516282 Msa0875260:CDS 30.0%
TGGGTTACAATTGTGTTTAT+GGG + chr6_1:11516264-11516283 Msa0875260:CDS 30.0%
ACAATTGTGTTTATGGGAAA+TGG + chr6_1:11516270-11516289 Msa0875260:CDS 30.0%
TTGGTATTAGAATCAAGAAC+AGG + chr6_1:11516298-11516317 Msa0875260:CDS 30.0%
ATTAGAATCAAGAACAGGTT+TGG + chr6_1:11516303-11516322 Msa0875260:CDS 30.0%
!! TGATGTTGAAAGTGGATTTT+TGG + chr6_1:11516479-11516498 Msa0875260:CDS 30.0%
! TGTTGTCTGTTTTGTGAATA+AGG + chr6_1:11516543-11516562 Msa0875260:intron 30.0%
!!! TGATATTGGTTTTGCTCAAA+TGG + chr6_1:11516600-11516619 Msa0875260:CDS 30.0%
ATCTTCAAACCGCAAAAATA+AGG - chr6_1:11515856-11515875 None:intergenic 30.0%
!! GTTGATCATCATATCGATTT+CGG - chr6_1:11515929-11515948 None:intergenic 30.0%
! ACTTCAAACTGATTGTGTTT+TGG - chr6_1:11516159-11516178 None:intergenic 30.0%
CAGGGGATTTATTTAACAAA+GGG + chr6_1:11516198-11516217 Msa0875260:CDS 30.0%
TTGGGTTACAATTGTGTTTA+TGG + chr6_1:11516263-11516282 Msa0875260:CDS 30.0%
TGGGTTACAATTGTGTTTAT+GGG + chr6_1:11516264-11516283 Msa0875260:CDS 30.0%
ACAATTGTGTTTATGGGAAA+TGG + chr6_1:11516270-11516289 Msa0875260:CDS 30.0%
TTGGTATTAGAATCAAGAAC+AGG + chr6_1:11516298-11516317 Msa0875260:CDS 30.0%
ATTAGAATCAAGAACAGGTT+TGG + chr6_1:11516303-11516322 Msa0875260:CDS 30.0%
!! TGATGTTGAAAGTGGATTTT+TGG + chr6_1:11516479-11516498 Msa0875260:CDS 30.0%
! TGTTGTCTGTTTTGTGAATA+AGG + chr6_1:11516543-11516562 Msa0875260:intron 30.0%
!!! TGATATTGGTTTTGCTCAAA+TGG + chr6_1:11516600-11516619 Msa0875260:CDS 30.0%
CTCTCTTACAACATGTTGAT+TGG + chr6_1:11515779-11515798 Msa0875260:CDS 35.0%
CCATGTATGTCCTATACTTA+AGG - chr6_1:11515960-11515979 None:intergenic 35.0%
CCTTAAGTATAGGACATACA+TGG + chr6_1:11515957-11515976 Msa0875260:CDS 35.0%
!!! ATATGTGTGTGGTTTTGTTG+TGG + chr6_1:11515996-11516015 Msa0875260:CDS 35.0%
AAATCACGGGAAAACATCAT+CGG - chr6_1:11516099-11516118 None:intergenic 35.0%
! ATGATGTTTTCCCGTGATTT+TGG + chr6_1:11516099-11516118 Msa0875260:CDS 35.0%
CCTTTGTTAAATAAATCCCC+TGG - chr6_1:11516200-11516219 None:intergenic 35.0%
CCAGGGGATTTATTTAACAA+AGG + chr6_1:11516197-11516216 Msa0875260:CDS 35.0%
GGATTTATTTAACAAAGGGC+TGG + chr6_1:11516202-11516221 Msa0875260:CDS 35.0%
ACTGCACTTTGTAGAAATCA+CGG - chr6_1:11516236-11516255 None:intergenic 35.0%
GATTTCTACAAAGTGCAGTT+TGG + chr6_1:11516237-11516256 Msa0875260:CDS 35.0%
TTGTGTTTATGGGAAATGGA+AGG + chr6_1:11516274-11516293 Msa0875260:CDS 35.0%
TTTATGGGAAATGGAAGGTT+TGG + chr6_1:11516279-11516298 Msa0875260:CDS 35.0%
!! AAAATTCATCGGTGGGTTAA+AGG - chr6_1:11516349-11516368 None:intergenic 35.0%
! TTAACCCACCGATGAATTTT+AGG + chr6_1:11516349-11516368 Msa0875260:CDS 35.0%
! TAACCCACCGATGAATTTTA+GGG + chr6_1:11516350-11516369 Msa0875260:CDS 35.0%
CGATGAACCCTAAAATTCAT+CGG - chr6_1:11516360-11516379 None:intergenic 35.0%
!! TTTCAGGAACTTGCTGATAT+TGG + chr6_1:11516586-11516605 Msa0875260:intron 35.0%
AGAAACTTCGATAGTAGATG+TGG + chr6_1:11516633-11516652 Msa0875260:CDS 35.0%
AGGATCCATCGAAAAACTAA+GGG - chr6_1:11516689-11516708 None:intergenic 35.0%
AGAAGTAGAGGGTTAAATTC+AGG - chr6_1:11516810-11516829 None:intergenic 35.0%
CTCTCTTACAACATGTTGAT+TGG + chr6_1:11515779-11515798 Msa0875260:CDS 35.0%
CCATGTATGTCCTATACTTA+AGG - chr6_1:11515960-11515979 None:intergenic 35.0%
CCTTAAGTATAGGACATACA+TGG + chr6_1:11515957-11515976 Msa0875260:CDS 35.0%
!!! ATATGTGTGTGGTTTTGTTG+TGG + chr6_1:11515996-11516015 Msa0875260:CDS 35.0%
AAATCACGGGAAAACATCAT+CGG - chr6_1:11516099-11516118 None:intergenic 35.0%
! ATGATGTTTTCCCGTGATTT+TGG + chr6_1:11516099-11516118 Msa0875260:CDS 35.0%
CCTTTGTTAAATAAATCCCC+TGG - chr6_1:11516200-11516219 None:intergenic 35.0%
CCAGGGGATTTATTTAACAA+AGG + chr6_1:11516197-11516216 Msa0875260:CDS 35.0%
GGATTTATTTAACAAAGGGC+TGG + chr6_1:11516202-11516221 Msa0875260:CDS 35.0%
ACTGCACTTTGTAGAAATCA+CGG - chr6_1:11516236-11516255 None:intergenic 35.0%
GATTTCTACAAAGTGCAGTT+TGG + chr6_1:11516237-11516256 Msa0875260:CDS 35.0%
TTGTGTTTATGGGAAATGGA+AGG + chr6_1:11516274-11516293 Msa0875260:CDS 35.0%
TTTATGGGAAATGGAAGGTT+TGG + chr6_1:11516279-11516298 Msa0875260:CDS 35.0%
!! AAAATTCATCGGTGGGTTAA+AGG - chr6_1:11516349-11516368 None:intergenic 35.0%
! TTAACCCACCGATGAATTTT+AGG + chr6_1:11516349-11516368 Msa0875260:CDS 35.0%
! TAACCCACCGATGAATTTTA+GGG + chr6_1:11516350-11516369 Msa0875260:CDS 35.0%
CGATGAACCCTAAAATTCAT+CGG - chr6_1:11516360-11516379 None:intergenic 35.0%
!! TTTCAGGAACTTGCTGATAT+TGG + chr6_1:11516586-11516605 Msa0875260:intron 35.0%
AGAAACTTCGATAGTAGATG+TGG + chr6_1:11516633-11516652 Msa0875260:CDS 35.0%
AGGATCCATCGAAAAACTAA+GGG - chr6_1:11516689-11516708 None:intergenic 35.0%
AGAAGTAGAGGGTTAAATTC+AGG - chr6_1:11516810-11516829 None:intergenic 35.0%
TGCGGTTTGAAGATGATGTT+TGG + chr6_1:11515862-11515881 Msa0875260:intron 40.0%
!! TCATATCGATTTCGGTCACT+GGG - chr6_1:11515921-11515940 None:intergenic 40.0%
!! ATCATATCGATTTCGGTCAC+TGG - chr6_1:11515922-11515941 None:intergenic 40.0%
GTTGACGTTGAATATGTGTG+TGG + chr6_1:11515985-11516004 Msa0875260:CDS 40.0%
GAGTAGCATATTGTTGGATC+TGG - chr6_1:11516128-11516147 None:intergenic 40.0%
GATCCAACAATATGCTACTC+TGG + chr6_1:11516128-11516147 Msa0875260:CDS 40.0%
! ACACAATCAGTTTGAAGTGC+TGG + chr6_1:11516161-11516180 Msa0875260:CDS 40.0%
!! AGTTTGAAGTGCTGGTTGAA+AGG + chr6_1:11516169-11516188 Msa0875260:CDS 40.0%
CTGGTTGAAAGGAATAACCA+GGG + chr6_1:11516180-11516199 Msa0875260:CDS 40.0%
TGGTTGAAAGGAATAACCAG+GGG + chr6_1:11516181-11516200 Msa0875260:CDS 40.0%
GAACCCTAAAATTCATCGGT+GGG - chr6_1:11516356-11516375 None:intergenic 40.0%
TGAACCCTAAAATTCATCGG+TGG - chr6_1:11516357-11516376 None:intergenic 40.0%
CCTTGGAACAAACCAATCAA+GGG - chr6_1:11516400-11516419 None:intergenic 40.0%
!! TGGTTTTGCTCAAATGGCTT+TGG + chr6_1:11516606-11516625 Msa0875260:CDS 40.0%
AACTTCGATAGTAGATGTGG+TGG + chr6_1:11516636-11516655 Msa0875260:CDS 40.0%
TGGACGAAAATGGCAACATA+TGG + chr6_1:11516656-11516675 Msa0875260:CDS 40.0%
CAGGATCCATCGAAAAACTA+AGG - chr6_1:11516690-11516709 None:intergenic 40.0%
GTTAAATTCAGGCCAATTGC+AGG - chr6_1:11516799-11516818 None:intergenic 40.0%
ACGAATCACACAGAAGTAGA+GGG - chr6_1:11516821-11516840 None:intergenic 40.0%
TGCGGTTTGAAGATGATGTT+TGG + chr6_1:11515862-11515881 Msa0875260:intron 40.0%
!! TCATATCGATTTCGGTCACT+GGG - chr6_1:11515921-11515940 None:intergenic 40.0%
!! ATCATATCGATTTCGGTCAC+TGG - chr6_1:11515922-11515941 None:intergenic 40.0%
GTTGACGTTGAATATGTGTG+TGG + chr6_1:11515985-11516004 Msa0875260:CDS 40.0%
GAGTAGCATATTGTTGGATC+TGG - chr6_1:11516128-11516147 None:intergenic 40.0%
GATCCAACAATATGCTACTC+TGG + chr6_1:11516128-11516147 Msa0875260:CDS 40.0%
! ACACAATCAGTTTGAAGTGC+TGG + chr6_1:11516161-11516180 Msa0875260:CDS 40.0%
!! AGTTTGAAGTGCTGGTTGAA+AGG + chr6_1:11516169-11516188 Msa0875260:CDS 40.0%
CTGGTTGAAAGGAATAACCA+GGG + chr6_1:11516180-11516199 Msa0875260:CDS 40.0%
TGGTTGAAAGGAATAACCAG+GGG + chr6_1:11516181-11516200 Msa0875260:CDS 40.0%
GAACCCTAAAATTCATCGGT+GGG - chr6_1:11516356-11516375 None:intergenic 40.0%
TGAACCCTAAAATTCATCGG+TGG - chr6_1:11516357-11516376 None:intergenic 40.0%
CCTTGGAACAAACCAATCAA+GGG - chr6_1:11516400-11516419 None:intergenic 40.0%
!! TGGTTTTGCTCAAATGGCTT+TGG + chr6_1:11516606-11516625 Msa0875260:CDS 40.0%
AACTTCGATAGTAGATGTGG+TGG + chr6_1:11516636-11516655 Msa0875260:CDS 40.0%
TGGACGAAAATGGCAACATA+TGG + chr6_1:11516656-11516675 Msa0875260:CDS 40.0%
CAGGATCCATCGAAAAACTA+AGG - chr6_1:11516690-11516709 None:intergenic 40.0%
GTTAAATTCAGGCCAATTGC+AGG - chr6_1:11516799-11516818 None:intergenic 40.0%
ACGAATCACACAGAAGTAGA+GGG - chr6_1:11516821-11516840 None:intergenic 40.0%
ACGAGCTACGCCTTAAGTAT+AGG + chr6_1:11515947-11515966 Msa0875260:CDS 45.0%
GATCTGGTCTCCAAAATCAC+GGG - chr6_1:11516112-11516131 None:intergenic 45.0%
GGATCTGGTCTCCAAAATCA+CGG - chr6_1:11516113-11516132 None:intergenic 45.0%
CCACCAGAGTAGCATATTGT+TGG - chr6_1:11516134-11516153 None:intergenic 45.0%
CCAACAATATGCTACTCTGG+TGG + chr6_1:11516131-11516150 Msa0875260:CDS 45.0%
GCTGGTTGAAAGGAATAACC+AGG + chr6_1:11516179-11516198 Msa0875260:CDS 45.0%
!! ACAAAGTGCAGTTTGGTGCT+TGG + chr6_1:11516244-11516263 Msa0875260:CDS 45.0%
!! CAAAGTGCAGTTTGGTGCTT+GGG + chr6_1:11516245-11516264 Msa0875260:CDS 45.0%
!! TCATCGGTGGGTTAAAGGTT+GGG - chr6_1:11516344-11516363 None:intergenic 45.0%
!! TTCATCGGTGGGTTAAAGGT+TGG - chr6_1:11516345-11516364 None:intergenic 45.0%
ACAAACCAATCAAGGGTGAC+CGG - chr6_1:11516393-11516412 None:intergenic 45.0%
!! CCCTTGATTGGTTTGTTCCA+AGG + chr6_1:11516397-11516416 Msa0875260:CDS 45.0%
GCCTTGGAACAAACCAATCA+AGG - chr6_1:11516401-11516420 None:intergenic 45.0%
TTCACCTCGTCATGCATGAA+TGG - chr6_1:11516423-11516442 None:intergenic 45.0%
GCTGTTGCTGATGTTGAAAG+TGG + chr6_1:11516471-11516490 Msa0875260:CDS 45.0%
!! GTAGATGTGGTGGACGAAAA+TGG + chr6_1:11516646-11516665 Msa0875260:CDS 45.0%
!! CTGCACCCTTAGTTTTTCGA+TGG + chr6_1:11516681-11516700 Msa0875260:CDS 45.0%
! CCAATCTTGAAGTTTGGAGC+AGG - chr6_1:11516709-11516728 None:intergenic 45.0%
CCTGCTCCAAACTTCAAGAT+TGG + chr6_1:11516706-11516725 Msa0875260:CDS 45.0%
GCTCCAAACTTCAAGATTGG+AGG + chr6_1:11516709-11516728 Msa0875260:CDS 45.0%
CCACCTCCAATCTTGAAGTT+TGG - chr6_1:11516715-11516734 None:intergenic 45.0%
CCAAACTTCAAGATTGGAGG+TGG + chr6_1:11516712-11516731 Msa0875260:CDS 45.0%
ACTTCAAGATTGGAGGTGGT+TGG + chr6_1:11516716-11516735 Msa0875260:CDS 45.0%
CTTCAAGATTGGAGGTGGTT+GGG + chr6_1:11516717-11516736 Msa0875260:CDS 45.0%
AGCTTATGGTCAAGGCTAGA+AGG + chr6_1:11516740-11516759 Msa0875260:CDS 45.0%
AAGGCTAGAAGGTTCACAGA+GGG + chr6_1:11516751-11516770 Msa0875260:CDS 45.0%
GACGAATCACACAGAAGTAG+AGG - chr6_1:11516822-11516841 None:intergenic 45.0%
ACGAGCTACGCCTTAAGTAT+AGG + chr6_1:11515947-11515966 Msa0875260:CDS 45.0%
GATCTGGTCTCCAAAATCAC+GGG - chr6_1:11516112-11516131 None:intergenic 45.0%
GGATCTGGTCTCCAAAATCA+CGG - chr6_1:11516113-11516132 None:intergenic 45.0%
CCACCAGAGTAGCATATTGT+TGG - chr6_1:11516134-11516153 None:intergenic 45.0%
CCAACAATATGCTACTCTGG+TGG + chr6_1:11516131-11516150 Msa0875260:CDS 45.0%
GCTGGTTGAAAGGAATAACC+AGG + chr6_1:11516179-11516198 Msa0875260:CDS 45.0%
!! ACAAAGTGCAGTTTGGTGCT+TGG + chr6_1:11516244-11516263 Msa0875260:CDS 45.0%
!! CAAAGTGCAGTTTGGTGCTT+GGG + chr6_1:11516245-11516264 Msa0875260:CDS 45.0%
!! TCATCGGTGGGTTAAAGGTT+GGG - chr6_1:11516344-11516363 None:intergenic 45.0%
!! TTCATCGGTGGGTTAAAGGT+TGG - chr6_1:11516345-11516364 None:intergenic 45.0%
ACAAACCAATCAAGGGTGAC+CGG - chr6_1:11516393-11516412 None:intergenic 45.0%
!! CCCTTGATTGGTTTGTTCCA+AGG + chr6_1:11516397-11516416 Msa0875260:CDS 45.0%
GCCTTGGAACAAACCAATCA+AGG - chr6_1:11516401-11516420 None:intergenic 45.0%
TTCACCTCGTCATGCATGAA+TGG - chr6_1:11516423-11516442 None:intergenic 45.0%
GCTGTTGCTGATGTTGAAAG+TGG + chr6_1:11516471-11516490 Msa0875260:CDS 45.0%
!! GTAGATGTGGTGGACGAAAA+TGG + chr6_1:11516646-11516665 Msa0875260:CDS 45.0%
!! CTGCACCCTTAGTTTTTCGA+TGG + chr6_1:11516681-11516700 Msa0875260:CDS 45.0%
! CCAATCTTGAAGTTTGGAGC+AGG - chr6_1:11516709-11516728 None:intergenic 45.0%
CCTGCTCCAAACTTCAAGAT+TGG + chr6_1:11516706-11516725 Msa0875260:CDS 45.0%
GCTCCAAACTTCAAGATTGG+AGG + chr6_1:11516709-11516728 Msa0875260:CDS 45.0%
CCACCTCCAATCTTGAAGTT+TGG - chr6_1:11516715-11516734 None:intergenic 45.0%
CCAAACTTCAAGATTGGAGG+TGG + chr6_1:11516712-11516731 Msa0875260:CDS 45.0%
ACTTCAAGATTGGAGGTGGT+TGG + chr6_1:11516716-11516735 Msa0875260:CDS 45.0%
CTTCAAGATTGGAGGTGGTT+GGG + chr6_1:11516717-11516736 Msa0875260:CDS 45.0%
AGCTTATGGTCAAGGCTAGA+AGG + chr6_1:11516740-11516759 Msa0875260:CDS 45.0%
AAGGCTAGAAGGTTCACAGA+GGG + chr6_1:11516751-11516770 Msa0875260:CDS 45.0%
GACGAATCACACAGAAGTAG+AGG - chr6_1:11516822-11516841 None:intergenic 45.0%
!! AGAGCATTGCCACGTCGTTA+TGG - chr6_1:11515763-11515782 None:intergenic 50.0%
TCGATTTCGGTCACTGGGTT+GGG - chr6_1:11515916-11515935 None:intergenic 50.0%
! ATCGATTTCGGTCACTGGGT+TGG - chr6_1:11515917-11515936 None:intergenic 50.0%
GGTTCATCGCAATGCTGTTC+CGG + chr6_1:11516371-11516390 Msa0875260:CDS 50.0%
TCGTCATGCATGAATGGCCT+TGG - chr6_1:11516417-11516436 None:intergenic 50.0%
AAGGCCATTCATGCATGACG+AGG + chr6_1:11516416-11516435 Msa0875260:CDS 50.0%
TGGTTGGGAGCTTATGGTCA+AGG + chr6_1:11516732-11516751 Msa0875260:CDS 50.0%
CAAGGCTAGAAGGTTCACAG+AGG + chr6_1:11516750-11516769 Msa0875260:CDS 50.0%
! GTGATTGGTGCTCCTGCAAT+TGG + chr6_1:11516784-11516803 Msa0875260:CDS 50.0%
!! AGAGCATTGCCACGTCGTTA+TGG - chr6_1:11515763-11515782 None:intergenic 50.0%
TCGATTTCGGTCACTGGGTT+GGG - chr6_1:11515916-11515935 None:intergenic 50.0%
! ATCGATTTCGGTCACTGGGT+TGG - chr6_1:11515917-11515936 None:intergenic 50.0%
GGTTCATCGCAATGCTGTTC+CGG + chr6_1:11516371-11516390 Msa0875260:CDS 50.0%
TCGTCATGCATGAATGGCCT+TGG - chr6_1:11516417-11516436 None:intergenic 50.0%
AAGGCCATTCATGCATGACG+AGG + chr6_1:11516416-11516435 Msa0875260:CDS 50.0%
TGGTTGGGAGCTTATGGTCA+AGG + chr6_1:11516732-11516751 Msa0875260:CDS 50.0%
CAAGGCTAGAAGGTTCACAG+AGG + chr6_1:11516750-11516769 Msa0875260:CDS 50.0%
! GTGATTGGTGCTCCTGCAAT+TGG + chr6_1:11516784-11516803 Msa0875260:CDS 50.0%
GGCTTTCCACCATAACGACG+TGG + chr6_1:11515751-11515770 Msa0875260:CDS 55.0%
GCATTGCCACGTCGTTATGG+TGG - chr6_1:11515760-11515779 None:intergenic 55.0%
! GTCACTGGGTTGGGATCAAG+CGG - chr6_1:11515907-11515926 None:intergenic 55.0%
CTGTTCCGGTCACCCTTGAT+TGG + chr6_1:11516385-11516404 Msa0875260:CDS 55.0%
TGGAGGTGGTTGGGAGCTTA+TGG + chr6_1:11516726-11516745 Msa0875260:CDS 55.0%
GGCTTTCCACCATAACGACG+TGG + chr6_1:11515751-11515770 Msa0875260:CDS 55.0%
GCATTGCCACGTCGTTATGG+TGG - chr6_1:11515760-11515779 None:intergenic 55.0%
! GTCACTGGGTTGGGATCAAG+CGG - chr6_1:11515907-11515926 None:intergenic 55.0%
CTGTTCCGGTCACCCTTGAT+TGG + chr6_1:11516385-11516404 Msa0875260:CDS 55.0%
TGGAGGTGGTTGGGAGCTTA+TGG + chr6_1:11516726-11516745 Msa0875260:CDS 55.0%
! GTTCACAGAGGGTGCACGTG+TGG + chr6_1:11516762-11516781 Msa0875260:CDS 60.0%
! GAGGGTGCACGTGTGGTGAT+TGG + chr6_1:11516769-11516788 Msa0875260:CDS 60.0%
! GTTCACAGAGGGTGCACGTG+TGG + chr6_1:11516762-11516781 Msa0875260:CDS 60.0%
! GAGGGTGCACGTGTGGTGAT+TGG + chr6_1:11516769-11516788 Msa0875260:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 11515749 11516846 11515749 ID=Msa0875260;Name=Msa0875260
chr6_1 mRNA 11515749 11516846 11515749 ID=Msa0875260-mRNA-1;Parent=Msa0875260;Name=Msa0875260-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.5|1|1|4|0|280
chr6_1 exon 11515749 11515800 11515749 ID=Msa0875260-mRNA-1:exon:3536;Parent=Msa0875260-mRNA-1
chr6_1 exon 11515902 11516017 11515902 ID=Msa0875260-mRNA-1:exon:3537;Parent=Msa0875260-mRNA-1
chr6_1 exon 11516081 11516500 11516081 ID=Msa0875260-mRNA-1:exon:3538;Parent=Msa0875260-mRNA-1
chr6_1 exon 11516592 11516846 11516592 ID=Msa0875260-mRNA-1:exon:3539;Parent=Msa0875260-mRNA-1
chr6_1 CDS 11515749 11515800 11515749 ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1
chr6_1 CDS 11515902 11516017 11515902 ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1
chr6_1 CDS 11516081 11516500 11516081 ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1
chr6_1 CDS 11516592 11516846 11516592 ID=Msa0875260-mRNA-1:cds;Parent=Msa0875260-mRNA-1
Gene Sequence

>Msa0875260

ATGGCTTTCCACCATAACGACGTGGCAATGCTCTCTTACAACATGTTGATTGCACCGCTTGATCCCAACCCAGTGACCGAAATCGATATGATGATCAACGAGCTACGCCTTAAGTATAGGACATACATGGTTGAAGTTGACGTTGAATATGTGTGTGGTTTTGTTGTGGGTGCTGTTCTGTTGCCGATGATGTTTTCCCGTGATTTTGGAGACCAGATCCAACAATATGCTACTCTGGTGGATCCAAAACACAATCAGTTTGAAGTGCTGGTTGAAAGGAATAACCAGGGGATTTATTTAACAAAGGGCTGGCATGCTATCCGTGATTTCTACAAAGTGCAGTTTGGTGCTTGGGTTACAATTGTGTTTATGGGAAATGGAAGGTTTGGTATTAGAATCAAGAACAGGTTTGGTAAGAGAATTCGTTGCCCAACCTTTAACCCACCGATGAATTTTAGGGTTCATCGCAATGCTGTTCCGGTCACCCTTGATTGGTTTGTTCCAAGGCCATTCATGCATGACGAGGTGAACTTTCAACTCACGTATGAGAAGAAGCTTGCTGTTGCTGATGTTGAAAGTGGATTTTTGGAACTTGCTGATATTGGTTTTGCTCAAATGGCTTTGGATAGAGAAACTTCGATAGTAGATGTGGTGGACGAAAATGGCAACATATGGAACTGCACCCTTAGTTTTTCGATGGATCCTGCTCCAAACTTCAAGATTGGAGGTGGTTGGGAGCTTATGGTCAAGGCTAGAAGGTTCACAGAGGGTGCACGTGTGGTGATTGGTGCTCCTGCAATTGGCCTGAATTTAACCCTCTACTTCTGTGTGATTCGTCGTTGA

Protein sequence

>Msa0875260

MAFHHNDVAMLSYNMLIAPLDPNPVTEIDMMINELRLKYRTYMVEVDVEYVCGFVVGAVLLPMMFSRDFGDQIQQYATLVDPKHNQFEVLVERNNQGIYLTKGWHAIRDFYKVQFGAWVTIVFMGNGRFGIRIKNRFGKRIRCPTFNPPMNFRVHRNAVPVTLDWFVPRPFMHDEVNFQLTYEKKLAVADVESGFLELADIGFAQMALDRETSIVDVVDENGNIWNCTLSFSMDPAPNFKIGGGWELMVKARRFTEGARVVIGAPAIGLNLTLYFCVIRR*