Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033420 | G8A101 | 85.000 | 280 | 36 | 1 | 1 | 280 | 1 | 274 | 1.09e-179 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0329190 | 0.800427 | 1.448998e-48 | -8.615850e-47 |
| Msa0033420 | Msa0405370 | 0.805236 | 1.471591e-49 | -8.615850e-47 |
| Msa0033420 | Msa0502160 | 0.857000 | 2.199177e-62 | -8.615850e-47 |
| Msa0033420 | Msa0514760 | 0.922108 | 1.508982e-88 | -8.615850e-47 |
| Msa0033420 | Msa0541200 | 0.857917 | 1.176799e-62 | -8.615850e-47 |
| Msa0033420 | Msa0627670 | 0.857052 | 2.121530e-62 | -8.615850e-47 |
| Msa0033420 | Msa0767760 | 0.801063 | 1.074316e-48 | -8.615850e-47 |
| Msa0033420 | Msa0863890 | 0.880608 | 4.770539e-70 | -8.615850e-47 |
| Msa0033420 | Msa0875260 | 0.904645 | 9.880625e-80 | -8.615850e-47 |
| Msa0033420 | Msa0993030 | 0.920242 | 1.638634e-87 | -8.615850e-47 |
| Msa0033420 | Msa1108650 | 0.865276 | 6.642302e-65 | -8.615850e-47 |
| Msa0033420 | Msa1233890 | 0.801577 | 8.433787e-49 | -8.615850e-47 |
| Msa0033420 | Msa1419030 | 0.912567 | 1.679417e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033420 | MtrunA17_Chr1g0206471 | 85.000 | 280 | 36 | 1 | 1 | 280 | 1 | 274 | 0.0 | 504 |
| Msa0033420 | MtrunA17_Chr7g0270401 | 52.963 | 270 | 121 | 1 | 11 | 280 | 10 | 273 | 3.20e-99 | 291 |
| Msa0033420 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 4 | 9 | 196 | 8 | 194 | 3.49e-53 | 171 |
| Msa0033420 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.27e-39 | 137 |
| Msa0033420 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 5.83e-39 | 134 |
| Msa0033420 | MtrunA17_Chr7g0234161 | 57.407 | 108 | 46 | 0 | 137 | 244 | 16 | 123 | 1.26e-37 | 129 |
| Msa0033420 | MtrunA17_Chr3g0123031 | 54.128 | 109 | 32 | 2 | 172 | 280 | 1 | 91 | 2.34e-30 | 109 |
| Msa0033420 | MtrunA17_Chr6g0473661 | 28.049 | 246 | 157 | 5 | 38 | 275 | 229 | 462 | 3.64e-24 | 101 |
| Msa0033420 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 4.83e-23 | 92.8 |
| Msa0033420 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 2.18e-12 | 63.9 |
| Msa0033420 | MtrunA17_Chr8g0359311 | 46.988 | 83 | 44 | 0 | 197 | 279 | 17 | 99 | 1.24e-21 | 87.0 |
| Msa0033420 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 2.63e-21 | 85.9 |
| Msa0033420 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 5.29e-21 | 84.7 |
| Msa0033420 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 5.67e-14 | 67.0 |
| Msa0033420 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 3.86e-13 | 68.9 |
| Msa0033420 | MtrunA17_Chr6g0473651 | 29.730 | 148 | 85 | 3 | 116 | 256 | 23 | 158 | 8.59e-12 | 64.7 |
| Msa0033420 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 2.08e-12 | 62.8 |
| Msa0033420 | MtrunA17_Chr7g0237161 | 37.037 | 81 | 51 | 0 | 180 | 260 | 3 | 83 | 1.09e-11 | 59.7 |
| Msa0033420 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 7.57e-11 | 59.3 |
| Msa0033420 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 8.08e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 1_1:-60911631 | Msa0033420:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 1_1:+60911548 | None:intergenic |
| TAGAGGTGGTTGGGAGCTTA+TGG | 0.302872 | 1_1:-60911168 | Msa0033420:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 1_1:-60911248 | Msa0033420:CDS |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 1_1:-60911624 | Msa0033420:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 1_1:+60911738 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 1_1:+60911098 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 1_1:-60911308 | Msa0033420:intron |
| CCACCTCTAATCTTGAAGTT+TGG | 0.352067 | 1_1:+60911182 | None:intergenic |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 1_1:-60911649 | Msa0033420:CDS |
| CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | 1_1:-60911509 | Msa0033420:CDS |
| GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | 1_1:-60911523 | Msa0033420:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 1_1:-60912115 | Msa0033420:intron |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 1_1:+60911981 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 1_1:+60911968 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 1_1:-60911110 | Msa0033420:CDS |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 1_1:-60911497 | Msa0033420:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 1_1:-60911650 | Msa0033420:CDS |
| GCTCCAAACTTCAAGATTAG+AGG | 0.397605 | 1_1:-60911185 | Msa0033420:CDS |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 1_1:+60911975 | None:intergenic |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 1_1:-60911696 | Msa0033420:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 1_1:-60911630 | Msa0033420:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 1_1:-60911591 | Msa0033420:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 1_1:+60911937 | None:intergenic |
| CTTCAAGATTAGAGGTGGTT+GGG | 0.429385 | 1_1:-60911177 | Msa0033420:CDS |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 1_1:+60911980 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 1_1:-60911154 | Msa0033420:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 1_1:+60911553 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 1_1:-60911733 | Msa0033420:CDS |
| AGAGCATTGCCACGTCGTTA+TGG | 0.443549 | 1_1:+60912134 | None:intergenic |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 1_1:+60911769 | None:intergenic |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 1_1:+60911552 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 1_1:-60911657 | Msa0033420:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 1_1:-60911596 | Msa0033420:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 1_1:+60911763 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 1_1:-60911947 | Msa0033420:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 1_1:+60911496 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 1_1:-60911423 | Msa0033420:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 1_1:+60911474 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 1_1:+60911480 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 1_1:-60911615 | Msa0033420:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 1_1:-60911238 | Msa0033420:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 1_1:-60911697 | Msa0033420:CDS |
| CTAATCTTGAAGTTTGGAGC+AGG | 0.517301 | 1_1:+60911188 | None:intergenic |
| ACTTCAAGATTAGAGGTGGT+TGG | 0.517385 | 1_1:-60911178 | Msa0033420:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 1_1:-60911125 | Msa0033420:CDS |
| GGATCTGGTCTCCGAAATCA+CGG | 0.534506 | 1_1:+60911784 | None:intergenic |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 1_1:-60911725 | Msa0033420:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 1_1:+60911697 | None:intergenic |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 1_1:-60911692 | Msa0033420:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 1_1:+60911087 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 1_1:-60911766 | Msa0033420:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 1_1:+60911976 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 1_1:-60911620 | Msa0033420:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | 1_1:+60911504 | None:intergenic |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 1_1:+60911990 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 1_1:-60911258 | Msa0033420:CDS |
| CGATGAACCCTAAAATTCAT+CGG | 0.585773 | 1_1:+60911537 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 1_1:-60911132 | Msa0033420:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 1_1:-60911937 | Msa0033420:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 1_1:-60911162 | Msa0033420:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 1_1:+60911541 | None:intergenic |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 1_1:+60911075 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 1_1:+60911661 | None:intergenic |
| GCATTGCCACGTCGTTATGG+TGG | 0.603259 | 1_1:+60912137 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 1_1:-60911715 | Msa0033420:CDS |
| CCAAACTTCAAGATTAGAGG+TGG | 0.613090 | 1_1:-60911182 | Msa0033420:CDS |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 1_1:-60911763 | Msa0033420:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 1_1:+60911497 | None:intergenic |
| GATCTGGTCTCCGAAATCAC+GGG | 0.632348 | 1_1:+60911785 | None:intergenic |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 1_1:+60911540 | None:intergenic |
| AAATCACGGGAAAACATCAT+CGG | 0.633688 | 1_1:+60911798 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 1_1:-60911261 | Msa0033420:CDS |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 1_1:-60911909 | Msa0033420:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 1_1:+60911076 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 1_1:-60911714 | Msa0033420:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 1_1:-60911143 | Msa0033420:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 1_1:-60911478 | Msa0033420:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.712618 | 1_1:-60912143 | Msa0033420:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 1_1:-60911713 | Msa0033420:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 1_1:-60911144 | Msa0033420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr1_1:60911355-60911374 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr1_1:60911355-60911374 | None:intergenic | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr1_1:60911164-60911183 | None:intergenic | 20.0% |
| !!! | GACATTTTTTATGTTTTTTC+AGG | - | chr1_1:60911891-60911910 | Msa0033420:intron | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr1_1:60911164-60911183 | None:intergenic | 20.0% |
| !!! | GACATTTTTTATGTTTTTTC+AGG | - | chr1_1:60911891-60911910 | Msa0033420:intron | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr1_1:60911165-60911184 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr1_1:60911165-60911184 | Msa0033420:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr1_1:60911351-60911370 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr1_1:60911378-60911397 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr1_1:60911379-60911398 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr1_1:60911380-60911399 | Msa0033420:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr1_1:60911381-60911400 | Msa0033420:intron | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr1_1:60911165-60911184 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr1_1:60911165-60911184 | Msa0033420:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr1_1:60911351-60911370 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr1_1:60911378-60911397 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr1_1:60911379-60911398 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr1_1:60911380-60911399 | Msa0033420:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr1_1:60911381-60911400 | Msa0033420:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr1_1:60911177-60911196 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr1_1:60911250-60911269 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr1_1:60911480-60911499 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr1_1:60911519-60911538 | Msa0033420:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr1_1:60911584-60911603 | Msa0033420:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr1_1:60911585-60911604 | Msa0033420:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr1_1:60911591-60911610 | Msa0033420:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr1_1:60911619-60911638 | Msa0033420:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr1_1:60911624-60911643 | Msa0033420:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr1_1:60911800-60911819 | Msa0033420:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr1_1:60911864-60911883 | Msa0033420:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr1_1:60911921-60911940 | Msa0033420:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr1_1:60911954-60911973 | Msa0033420:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr1_1:60911177-60911196 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr1_1:60911250-60911269 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr1_1:60911480-60911499 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr1_1:60911519-60911538 | Msa0033420:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr1_1:60911584-60911603 | Msa0033420:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr1_1:60911585-60911604 | Msa0033420:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr1_1:60911591-60911610 | Msa0033420:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr1_1:60911619-60911638 | Msa0033420:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr1_1:60911624-60911643 | Msa0033420:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr1_1:60911800-60911819 | Msa0033420:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr1_1:60911864-60911883 | Msa0033420:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr1_1:60911921-60911940 | Msa0033420:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr1_1:60911954-60911973 | Msa0033420:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr1_1:60911100-60911119 | Msa0033420:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | + | chr1_1:60911281-60911300 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr1_1:60911278-60911297 | Msa0033420:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr1_1:60911317-60911336 | Msa0033420:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr1_1:60911420-60911439 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+CGG | - | chr1_1:60911420-60911439 | Msa0033420:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr1_1:60911521-60911540 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr1_1:60911518-60911537 | Msa0033420:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr1_1:60911523-60911542 | Msa0033420:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr1_1:60911557-60911576 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr1_1:60911558-60911577 | Msa0033420:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr1_1:60911595-60911614 | Msa0033420:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr1_1:60911600-60911619 | Msa0033420:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr1_1:60911670-60911689 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr1_1:60911670-60911689 | Msa0033420:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr1_1:60911671-60911690 | Msa0033420:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr1_1:60911681-60911700 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | - | chr1_1:60911907-60911926 | Msa0033420:CDS | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | - | chr1_1:60911957-60911976 | Msa0033420:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr1_1:60912010-60912029 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr1_1:60912131-60912150 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr1_1:60911100-60911119 | Msa0033420:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | + | chr1_1:60911281-60911300 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr1_1:60911278-60911297 | Msa0033420:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr1_1:60911317-60911336 | Msa0033420:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr1_1:60911420-60911439 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+CGG | - | chr1_1:60911420-60911439 | Msa0033420:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr1_1:60911521-60911540 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr1_1:60911518-60911537 | Msa0033420:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr1_1:60911523-60911542 | Msa0033420:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr1_1:60911557-60911576 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr1_1:60911558-60911577 | Msa0033420:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr1_1:60911595-60911614 | Msa0033420:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr1_1:60911600-60911619 | Msa0033420:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr1_1:60911670-60911689 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr1_1:60911670-60911689 | Msa0033420:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr1_1:60911671-60911690 | Msa0033420:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr1_1:60911681-60911700 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | - | chr1_1:60911907-60911926 | Msa0033420:CDS | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | - | chr1_1:60911957-60911976 | Msa0033420:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr1_1:60912010-60912029 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr1_1:60912131-60912150 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr1_1:60911183-60911202 | Msa0033420:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr1_1:60911242-60911261 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr1_1:60911243-60911262 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr1_1:60911306-60911325 | Msa0033420:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr1_1:60911449-60911468 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr1_1:60911449-60911468 | Msa0033420:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr1_1:60911482-60911501 | Msa0033420:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr1_1:60911490-60911509 | Msa0033420:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr1_1:60911501-60911520 | Msa0033420:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr1_1:60911502-60911521 | Msa0033420:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr1_1:60911677-60911696 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr1_1:60911678-60911697 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | + | chr1_1:60911721-60911740 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr1_1:60911927-60911946 | Msa0033420:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr1_1:60911967-60911986 | Msa0033420:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr1_1:60911977-60911996 | Msa0033420:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr1_1:60912011-60912030 | None:intergenic | 40.0% | |
| ! | CTAATCTTGAAGTTTGGAGC+AGG | + | chr1_1:60912030-60912049 | None:intergenic | 40.0% |
| GCTCCAAACTTCAAGATTAG+AGG | - | chr1_1:60912030-60912049 | Msa0033420:intron | 40.0% | |
| CCACCTCTAATCTTGAAGTT+TGG | + | chr1_1:60912036-60912055 | None:intergenic | 40.0% | |
| CCAAACTTCAAGATTAGAGG+TGG | - | chr1_1:60912033-60912052 | Msa0033420:intron | 40.0% | |
| ACTTCAAGATTAGAGGTGGT+TGG | - | chr1_1:60912037-60912056 | Msa0033420:intron | 40.0% | |
| CTTCAAGATTAGAGGTGGTT+GGG | - | chr1_1:60912038-60912057 | Msa0033420:intron | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr1_1:60912120-60912139 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr1_1:60912142-60912161 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr1_1:60911183-60911202 | Msa0033420:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr1_1:60911242-60911261 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr1_1:60911243-60911262 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr1_1:60911306-60911325 | Msa0033420:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr1_1:60911449-60911468 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr1_1:60911449-60911468 | Msa0033420:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr1_1:60911482-60911501 | Msa0033420:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr1_1:60911490-60911509 | Msa0033420:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr1_1:60911501-60911520 | Msa0033420:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr1_1:60911502-60911521 | Msa0033420:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr1_1:60911677-60911696 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr1_1:60911678-60911697 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | + | chr1_1:60911721-60911740 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr1_1:60911927-60911946 | Msa0033420:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr1_1:60911967-60911986 | Msa0033420:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr1_1:60911977-60911996 | Msa0033420:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr1_1:60912011-60912030 | None:intergenic | 40.0% | |
| ! | CTAATCTTGAAGTTTGGAGC+AGG | + | chr1_1:60912030-60912049 | None:intergenic | 40.0% |
| GCTCCAAACTTCAAGATTAG+AGG | - | chr1_1:60912030-60912049 | Msa0033420:intron | 40.0% | |
| CCACCTCTAATCTTGAAGTT+TGG | + | chr1_1:60912036-60912055 | None:intergenic | 40.0% | |
| CCAAACTTCAAGATTAGAGG+TGG | - | chr1_1:60912033-60912052 | Msa0033420:intron | 40.0% | |
| ACTTCAAGATTAGAGGTGGT+TGG | - | chr1_1:60912037-60912056 | Msa0033420:intron | 40.0% | |
| CTTCAAGATTAGAGGTGGTT+GGG | - | chr1_1:60912038-60912057 | Msa0033420:intron | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr1_1:60912120-60912139 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr1_1:60912142-60912161 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr1_1:60911268-60911287 | Msa0033420:CDS | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr1_1:60911455-60911474 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr1_1:60911452-60911471 | Msa0033420:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr1_1:60911500-60911519 | Msa0033420:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr1_1:60911565-60911584 | Msa0033420:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr1_1:60911566-60911585 | Msa0033420:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr1_1:60911665-60911684 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr1_1:60911666-60911685 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr1_1:60911714-60911733 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | - | chr1_1:60911718-60911737 | Msa0033420:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | + | chr1_1:60911722-60911741 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr1_1:60911744-60911763 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr1_1:60911792-60911811 | Msa0033420:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr1_1:60912002-60912021 | Msa0033420:intron | 45.0% |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr1_1:60912061-60912080 | Msa0033420:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr1_1:60912072-60912091 | Msa0033420:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr1_1:60912143-60912162 | None:intergenic | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr1_1:60911268-60911287 | Msa0033420:CDS | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr1_1:60911455-60911474 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr1_1:60911452-60911471 | Msa0033420:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr1_1:60911500-60911519 | Msa0033420:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr1_1:60911565-60911584 | Msa0033420:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr1_1:60911566-60911585 | Msa0033420:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr1_1:60911665-60911684 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr1_1:60911666-60911685 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr1_1:60911714-60911733 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | - | chr1_1:60911718-60911737 | Msa0033420:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | + | chr1_1:60911722-60911741 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr1_1:60911744-60911763 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr1_1:60911792-60911811 | Msa0033420:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr1_1:60912002-60912021 | Msa0033420:intron | 45.0% |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr1_1:60912061-60912080 | Msa0033420:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr1_1:60912072-60912091 | Msa0033420:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr1_1:60912143-60912162 | None:intergenic | 45.0% | |
| !! | AGAGCATTGCCACGTCGTTA+TGG | + | chr1_1:60911084-60911103 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr1_1:60911237-60911256 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr1_1:60911238-60911257 | None:intergenic | 50.0% |
| GATCTGGTCTCCGAAATCAC+GGG | + | chr1_1:60911433-60911452 | None:intergenic | 50.0% | |
| GGATCTGGTCTCCGAAATCA+CGG | + | chr1_1:60911434-60911453 | None:intergenic | 50.0% | |
| GGTTCATCGCAATGCTGTTC+CGG | - | chr1_1:60911692-60911711 | Msa0033420:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | + | chr1_1:60911738-60911757 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr1_1:60911737-60911756 | Msa0033420:CDS | 50.0% | |
| TAGAGGTGGTTGGGAGCTTA+TGG | - | chr1_1:60912047-60912066 | Msa0033420:intron | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr1_1:60912053-60912072 | Msa0033420:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr1_1:60912071-60912090 | Msa0033420:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr1_1:60912105-60912124 | Msa0033420:intron | 50.0% |
| !! | AGAGCATTGCCACGTCGTTA+TGG | + | chr1_1:60911084-60911103 | None:intergenic | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr1_1:60911237-60911256 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr1_1:60911238-60911257 | None:intergenic | 50.0% |
| GATCTGGTCTCCGAAATCAC+GGG | + | chr1_1:60911433-60911452 | None:intergenic | 50.0% | |
| GGATCTGGTCTCCGAAATCA+CGG | + | chr1_1:60911434-60911453 | None:intergenic | 50.0% | |
| GGTTCATCGCAATGCTGTTC+CGG | - | chr1_1:60911692-60911711 | Msa0033420:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | + | chr1_1:60911738-60911757 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr1_1:60911737-60911756 | Msa0033420:CDS | 50.0% | |
| TAGAGGTGGTTGGGAGCTTA+TGG | - | chr1_1:60912047-60912066 | Msa0033420:intron | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr1_1:60912053-60912072 | Msa0033420:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr1_1:60912071-60912090 | Msa0033420:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr1_1:60912105-60912124 | Msa0033420:intron | 50.0% |
| GGCTTTCCACCATAACGACG+TGG | - | chr1_1:60911072-60911091 | Msa0033420:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | + | chr1_1:60911081-60911100 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr1_1:60911228-60911247 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | - | chr1_1:60911706-60911725 | Msa0033420:CDS | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | - | chr1_1:60911072-60911091 | Msa0033420:CDS | 55.0% | |
| GCATTGCCACGTCGTTATGG+TGG | + | chr1_1:60911081-60911100 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr1_1:60911228-60911247 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | - | chr1_1:60911706-60911725 | Msa0033420:CDS | 55.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr1_1:60912083-60912102 | Msa0033420:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr1_1:60912090-60912109 | Msa0033420:intron | 60.0% |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr1_1:60912083-60912102 | Msa0033420:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr1_1:60912090-60912109 | Msa0033420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60911070 | 60912167 | 60911070 | ID=Msa0033420;Name=Msa0033420 |
| chr1_1 | mRNA | 60911070 | 60912167 | 60911070 | ID=Msa0033420-mRNA-1;Parent=Msa0033420;Name=Msa0033420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr1_1 | exon | 60912116 | 60912167 | 60912116 | ID=Msa0033420-mRNA-1:exon:19104;Parent=Msa0033420-mRNA-1 |
| chr1_1 | exon | 60911899 | 60912014 | 60911899 | ID=Msa0033420-mRNA-1:exon:19103;Parent=Msa0033420-mRNA-1 |
| chr1_1 | exon | 60911416 | 60911835 | 60911416 | ID=Msa0033420-mRNA-1:exon:19102;Parent=Msa0033420-mRNA-1 |
| chr1_1 | exon | 60911070 | 60911324 | 60911070 | ID=Msa0033420-mRNA-1:exon:19101;Parent=Msa0033420-mRNA-1 |
| chr1_1 | CDS | 60912116 | 60912167 | 60912116 | ID=Msa0033420-mRNA-1:cds;Parent=Msa0033420-mRNA-1 |
| chr1_1 | CDS | 60911899 | 60912014 | 60911899 | ID=Msa0033420-mRNA-1:cds;Parent=Msa0033420-mRNA-1 |
| chr1_1 | CDS | 60911416 | 60911835 | 60911416 | ID=Msa0033420-mRNA-1:cds;Parent=Msa0033420-mRNA-1 |
| chr1_1 | CDS | 60911070 | 60911324 | 60911070 | ID=Msa0033420-mRNA-1:cds;Parent=Msa0033420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
