Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863890 | KEH43958.1 | 84.286 | 280 | 38 | 1 | 1 | 280 | 1 | 274 | 2.79e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863890 | G8A101 | 84.286 | 280 | 38 | 1 | 1 | 280 | 1 | 274 | 1.33e-177 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0863890 | 0.806955 | 6.398445e-50 | -8.615850e-47 |
| Msa0033420 | Msa0863890 | 0.880608 | 4.770539e-70 | -8.615850e-47 |
| Msa0627670 | Msa0863890 | 0.870502 | 1.390275e-66 | -8.615850e-47 |
| Msa0731550 | Msa0863890 | 0.824283 | 8.780470e-54 | -8.615850e-47 |
| Msa0740760 | Msa0863890 | 0.816027 | 6.831614e-52 | -8.615850e-47 |
| Msa0405370 | Msa0863890 | 0.812057 | 5.132867e-51 | -8.615850e-47 |
| Msa0502160 | Msa0863890 | 0.837553 | 4.857965e-57 | -8.615850e-47 |
| Msa0514760 | Msa0863890 | 0.920245 | 1.632578e-87 | -8.615850e-47 |
| Msa0541200 | Msa0863890 | 0.915343 | 6.586188e-85 | -8.615850e-47 |
| Msa0863890 | Msa0875260 | 0.910963 | 1.039950e-82 | -8.615850e-47 |
| Msa0863890 | Msa0969520 | 0.807353 | 5.269994e-50 | -8.615850e-47 |
| Msa0863890 | Msa0993030 | 0.897156 | 1.846754e-76 | -8.615850e-47 |
| Msa0863890 | Msa1108650 | 0.898750 | 3.906329e-77 | -8.615850e-47 |
| Msa0863890 | Msa1233890 | 0.800067 | 1.715112e-48 | -8.615850e-47 |
| Msa0863890 | Msa1419030 | 0.890533 | 9.037493e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863890 | MtrunA17_Chr1g0206471 | 84.286 | 280 | 38 | 1 | 1 | 280 | 1 | 274 | 0.0 | 499 |
| Msa0863890 | MtrunA17_Chr7g0270401 | 52.222 | 270 | 123 | 1 | 11 | 280 | 10 | 273 | 1.49e-96 | 285 |
| Msa0863890 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 2 | 9 | 196 | 8 | 194 | 1.82e-53 | 172 |
| Msa0863890 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.12e-39 | 137 |
| Msa0863890 | MtrunA17_Chr1g0207921 | 40.845 | 71 | 42 | 0 | 208 | 278 | 127 | 197 | 2.11e-11 | 62.0 |
| Msa0863890 | MtrunA17_Chr7g0234161 | 59.259 | 108 | 44 | 0 | 137 | 244 | 16 | 123 | 1.33e-39 | 134 |
| Msa0863890 | MtrunA17_Chr7g0228461 | 64.646 | 99 | 34 | 1 | 60 | 157 | 1 | 99 | 4.41e-39 | 134 |
| Msa0863890 | MtrunA17_Chr3g0123031 | 54.128 | 109 | 32 | 2 | 172 | 280 | 1 | 91 | 1.67e-31 | 112 |
| Msa0863890 | MtrunA17_Chr6g0473661 | 28.340 | 247 | 155 | 6 | 38 | 275 | 229 | 462 | 1.08e-23 | 100 |
| Msa0863890 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 3.96e-23 | 93.2 |
| Msa0863890 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 4.32e-12 | 63.2 |
| Msa0863890 | MtrunA17_Chr8g0359311 | 46.988 | 83 | 44 | 0 | 197 | 279 | 17 | 99 | 8.56e-22 | 87.4 |
| Msa0863890 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 1.86e-21 | 86.3 |
| Msa0863890 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 3.59e-21 | 85.1 |
| Msa0863890 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 3.17e-14 | 67.4 |
| Msa0863890 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 2.06e-12 | 62.8 |
| Msa0863890 | MtrunA17_Chr6g0473651 | 29.730 | 148 | 85 | 3 | 116 | 256 | 23 | 158 | 2.59e-12 | 66.2 |
| Msa0863890 | MtrunA17_Chr6g0473651 | 29.927 | 137 | 82 | 3 | 61 | 196 | 228 | 351 | 4.83e-12 | 65.5 |
| Msa0863890 | MtrunA17_Chr7g0237161 | 37.037 | 81 | 51 | 0 | 180 | 260 | 3 | 83 | 4.32e-12 | 60.8 |
| Msa0863890 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 4.88e-11 | 60.1 |
| Msa0863890 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 8.45e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 5_4:-64010352 | Msa0863890:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 5_4:+64010269 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 5_4:-64009888 | Msa0863890:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 5_4:-64009968 | Msa0863890:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 5_4:+64009902 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 5_4:-64010345 | Msa0863890:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 5_4:+64010459 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 5_4:+64009818 | None:intergenic |
| GGTTCATCGCATTGTTGTTC+CGG | 0.344207 | 5_4:-64010244 | Msa0863890:CDS |
| TCGATTTCGGTCACTGGGTT+GGG | 0.346984 | 5_4:+64010702 | None:intergenic |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 5_4:-64010370 | Msa0863890:CDS |
| TTTCAGGAACCTGCTGATAT+TGG | 0.367052 | 5_4:-64010028 | Msa0863890:intron |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 5_4:-64010836 | Msa0863890:intron |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 5_4:-64009830 | Msa0863890:CDS |
| ATCGTATCGATTTCGGTCAC+TGG | 0.385523 | 5_4:+64010696 | None:intergenic |
| GTTGATCATCGTATCGATTT+CGG | 0.392117 | 5_4:+64010689 | None:intergenic |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 5_4:-64010371 | Msa0863890:CDS |
| TTGTTCCGGTCACCCTTGAT+TGG | 0.397974 | 5_4:-64010230 | Msa0863890:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 5_4:-64009897 | Msa0863890:CDS |
| AGAGCATCGCCACGTCGTTA+TGG | 0.401580 | 5_4:+64010855 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.402551 | 5_4:+64010701 | None:intergenic |
| CAAGGGATTTATTTAACAAA+GGG | 0.407166 | 5_4:-64010417 | Msa0863890:CDS |
| CCCTTGATTGGTTTGTTCAA+AGG | 0.416754 | 5_4:-64010218 | Msa0863890:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 5_4:-64010351 | Msa0863890:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 5_4:-64010312 | Msa0863890:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 5_4:+64010658 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 5_4:-64009874 | Msa0863890:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 5_4:+64010274 | None:intergenic |
| GCCTTTGAACAAACCAATCA+AGG | 0.439936 | 5_4:+64010217 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 5_4:-64010454 | Msa0863890:CDS |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 5_4:+64010490 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 5_4:-64009908 | Msa0863890:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 5_4:+64010273 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 5_4:-64010378 | Msa0863890:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 5_4:-64010317 | Msa0863890:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 5_4:+64010484 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 5_4:-64010668 | Msa0863890:CDS |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 5_4:-64010144 | Msa0863890:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 5_4:+64010195 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 5_4:-64010336 | Msa0863890:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 5_4:-64009958 | Msa0863890:CDS |
| CCAAGGGATTTATTTAACAA+AGG | 0.497014 | 5_4:-64010418 | Msa0863890:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 5_4:-64009898 | Msa0863890:CDS |
| CCTTTGTTAAATAAATCCCT+TGG | 0.502953 | 5_4:+64010418 | None:intergenic |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 5_4:+64009908 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 5_4:-64009905 | Msa0863890:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 5_4:-64009845 | Msa0863890:CDS |
| TGAGCAAAACCAATATCAGC+AGG | 0.523701 | 5_4:+64010019 | None:intergenic |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 5_4:-64010446 | Msa0863890:CDS |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 5_4:-64009902 | Msa0863890:CDS |
| GCATCGCCACGTCGTTATGG+TGG | 0.543846 | 5_4:+64010858 | None:intergenic |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 5_4:-64010413 | Msa0863890:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 5_4:+64009807 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 5_4:-64010487 | Msa0863890:CDS |
| TCGTATCGATTTCGGTCACT+GGG | 0.564057 | 5_4:+64010697 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 5_4:-64010341 | Msa0863890:CDS |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 5_4:+64010711 | None:intergenic |
| GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | 5_4:+64010505 | None:intergenic |
| CGATGAACCCTAAAATTCAT+CGG | 0.578952 | 5_4:+64010258 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 5_4:-64009978 | Msa0863890:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.584526 | 5_4:+64010225 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | 5_4:+64010506 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 5_4:-64009852 | Msa0863890:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 5_4:-64010658 | Msa0863890:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 5_4:-64009882 | Msa0863890:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 5_4:+64010262 | None:intergenic |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 5_4:+64009795 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 5_4:+64010382 | None:intergenic |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | 5_4:+64010519 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 5_4:-64010484 | Msa0863890:CDS |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 5_4:+64010261 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 5_4:-64009981 | Msa0863890:CDS |
| CCTTTGAACAAACCAATCAA+GGG | 0.640005 | 5_4:+64010218 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+AGG | 0.660782 | 5_4:-64010435 | Msa0863890:CDS |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 5_4:-64010630 | Msa0863890:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 5_4:+64009796 | None:intergenic |
| TGGTTGAAAGGAATAACCAA+GGG | 0.681544 | 5_4:-64010434 | Msa0863890:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 5_4:-64009863 | Msa0863890:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 5_4:-64010199 | Msa0863890:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.714975 | 5_4:-64010864 | Msa0863890:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 5_4:-64009864 | Msa0863890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr5_4:64010075-64010094 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr5_4:64010612-64010631 | Msa0863890:intron | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr5_4:64010075-64010094 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr5_4:64010612-64010631 | Msa0863890:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr5_4:64009884-64009903 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr5_4:64009884-64009903 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr5_4:64009885-64009904 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+TGG | - | chr5_4:64009885-64009904 | Msa0863890:CDS | 25.0% |
| ! | ATCTTCAAACCACAAAAATA+AGG | + | chr5_4:64009897-64009916 | None:intergenic | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr5_4:64010071-64010090 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr5_4:64010098-64010117 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr5_4:64010099-64010118 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr5_4:64010100-64010119 | Msa0863890:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr5_4:64010101-64010120 | Msa0863890:intron | 25.0% |
| ! | CAAGGGATTTATTTAACAAA+GGG | - | chr5_4:64010239-64010258 | Msa0863890:CDS | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr5_4:64009885-64009904 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+TGG | - | chr5_4:64009885-64009904 | Msa0863890:CDS | 25.0% |
| ! | ATCTTCAAACCACAAAAATA+AGG | + | chr5_4:64009897-64009916 | None:intergenic | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr5_4:64010071-64010090 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr5_4:64010098-64010117 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr5_4:64010099-64010118 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr5_4:64010100-64010119 | Msa0863890:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr5_4:64010101-64010120 | Msa0863890:intron | 25.0% |
| ! | CAAGGGATTTATTTAACAAA+GGG | - | chr5_4:64010239-64010258 | Msa0863890:CDS | 25.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr5_4:64010200-64010219 | None:intergenic | 30.0% |
| CCTTTGTTAAATAAATCCCT+TGG | + | chr5_4:64010241-64010260 | None:intergenic | 30.0% | |
| CCAAGGGATTTATTTAACAA+AGG | - | chr5_4:64010238-64010257 | Msa0863890:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr5_4:64010304-64010323 | Msa0863890:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr5_4:64010305-64010324 | Msa0863890:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr5_4:64010311-64010330 | Msa0863890:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr5_4:64010339-64010358 | Msa0863890:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr5_4:64010344-64010363 | Msa0863890:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr5_4:64010520-64010539 | Msa0863890:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr5_4:64010584-64010603 | Msa0863890:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr5_4:64010642-64010661 | Msa0863890:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr5_4:64010675-64010694 | Msa0863890:CDS | 30.0% | |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr5_4:64010200-64010219 | None:intergenic | 30.0% |
| CCTTTGTTAAATAAATCCCT+TGG | + | chr5_4:64010241-64010260 | None:intergenic | 30.0% | |
| CCAAGGGATTTATTTAACAA+AGG | - | chr5_4:64010238-64010257 | Msa0863890:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr5_4:64010304-64010323 | Msa0863890:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr5_4:64010305-64010324 | Msa0863890:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr5_4:64010311-64010330 | Msa0863890:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr5_4:64010339-64010358 | Msa0863890:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr5_4:64010344-64010363 | Msa0863890:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr5_4:64010520-64010539 | Msa0863890:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr5_4:64010584-64010603 | Msa0863890:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr5_4:64010642-64010661 | Msa0863890:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr5_4:64010675-64010694 | Msa0863890:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr5_4:64009820-64009839 | Msa0863890:CDS | 35.0% | |
| TGTGGTTTGAAGATGATGTT+TGG | - | chr5_4:64009903-64009922 | Msa0863890:CDS | 35.0% | |
| !! | GTTGATCATCGTATCGATTT+CGG | + | chr5_4:64009970-64009989 | None:intergenic | 35.0% |
| CCATGTATGTCCTATACTTA+AGG | + | chr5_4:64010001-64010020 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr5_4:64009998-64010017 | Msa0863890:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr5_4:64010037-64010056 | Msa0863890:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr5_4:64010140-64010159 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | - | chr5_4:64010140-64010159 | Msa0863890:CDS | 35.0% |
| TGGTTGAAAGGAATAACCAA+GGG | - | chr5_4:64010222-64010241 | Msa0863890:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr5_4:64010243-64010262 | Msa0863890:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr5_4:64010277-64010296 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr5_4:64010278-64010297 | Msa0863890:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr5_4:64010315-64010334 | Msa0863890:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr5_4:64010320-64010339 | Msa0863890:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr5_4:64010390-64010409 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr5_4:64010390-64010409 | Msa0863890:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr5_4:64010391-64010410 | Msa0863890:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr5_4:64010401-64010420 | None:intergenic | 35.0% | |
| CCTTTGAACAAACCAATCAA+GGG | + | chr5_4:64010441-64010460 | None:intergenic | 35.0% | |
| AACTTCGATAATAGATGTGG+TGG | - | chr5_4:64010678-64010697 | Msa0863890:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr5_4:64010731-64010750 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr5_4:64010852-64010871 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr5_4:64009820-64009839 | Msa0863890:CDS | 35.0% | |
| TGTGGTTTGAAGATGATGTT+TGG | - | chr5_4:64009903-64009922 | Msa0863890:CDS | 35.0% | |
| !! | GTTGATCATCGTATCGATTT+CGG | + | chr5_4:64009970-64009989 | None:intergenic | 35.0% |
| CCATGTATGTCCTATACTTA+AGG | + | chr5_4:64010001-64010020 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr5_4:64009998-64010017 | Msa0863890:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr5_4:64010037-64010056 | Msa0863890:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr5_4:64010140-64010159 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | - | chr5_4:64010140-64010159 | Msa0863890:CDS | 35.0% |
| TGGTTGAAAGGAATAACCAA+GGG | - | chr5_4:64010222-64010241 | Msa0863890:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr5_4:64010243-64010262 | Msa0863890:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr5_4:64010277-64010296 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr5_4:64010278-64010297 | Msa0863890:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr5_4:64010315-64010334 | Msa0863890:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr5_4:64010320-64010339 | Msa0863890:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr5_4:64010390-64010409 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr5_4:64010390-64010409 | Msa0863890:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr5_4:64010391-64010410 | Msa0863890:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr5_4:64010401-64010420 | None:intergenic | 35.0% | |
| CCTTTGAACAAACCAATCAA+GGG | + | chr5_4:64010441-64010460 | None:intergenic | 35.0% | |
| AACTTCGATAATAGATGTGG+TGG | - | chr5_4:64010678-64010697 | Msa0863890:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr5_4:64010731-64010750 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr5_4:64010852-64010871 | None:intergenic | 35.0% | |
| GTTGACGTTGAATATGTGTG+TGG | - | chr5_4:64010026-64010045 | Msa0863890:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr5_4:64010169-64010188 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr5_4:64010169-64010188 | Msa0863890:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr5_4:64010202-64010221 | Msa0863890:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr5_4:64010210-64010229 | Msa0863890:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+AGG | - | chr5_4:64010221-64010240 | Msa0863890:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr5_4:64010397-64010416 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr5_4:64010398-64010417 | None:intergenic | 40.0% | |
| !! | CCCTTGATTGGTTTGTTCAA+AGG | - | chr5_4:64010438-64010457 | Msa0863890:CDS | 40.0% |
| GCCTTTGAACAAACCAATCA+AGG | + | chr5_4:64010442-64010461 | None:intergenic | 40.0% | |
| TTTCAGGAACCTGCTGATAT+TGG | - | chr5_4:64010628-64010647 | Msa0863890:CDS | 40.0% | |
| TGAGCAAAACCAATATCAGC+AGG | + | chr5_4:64010640-64010659 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr5_4:64010648-64010667 | Msa0863890:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr5_4:64010688-64010707 | Msa0863890:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr5_4:64010698-64010717 | Msa0863890:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr5_4:64010732-64010751 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr5_4:64010841-64010860 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr5_4:64010863-64010882 | None:intergenic | 40.0% | |
| GTTGACGTTGAATATGTGTG+TGG | - | chr5_4:64010026-64010045 | Msa0863890:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr5_4:64010169-64010188 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr5_4:64010169-64010188 | Msa0863890:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr5_4:64010202-64010221 | Msa0863890:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr5_4:64010210-64010229 | Msa0863890:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+AGG | - | chr5_4:64010221-64010240 | Msa0863890:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr5_4:64010397-64010416 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr5_4:64010398-64010417 | None:intergenic | 40.0% | |
| !! | CCCTTGATTGGTTTGTTCAA+AGG | - | chr5_4:64010438-64010457 | Msa0863890:CDS | 40.0% |
| GCCTTTGAACAAACCAATCA+AGG | + | chr5_4:64010442-64010461 | None:intergenic | 40.0% | |
| TTTCAGGAACCTGCTGATAT+TGG | - | chr5_4:64010628-64010647 | Msa0863890:CDS | 40.0% | |
| TGAGCAAAACCAATATCAGC+AGG | + | chr5_4:64010640-64010659 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr5_4:64010648-64010667 | Msa0863890:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr5_4:64010688-64010707 | Msa0863890:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr5_4:64010698-64010717 | Msa0863890:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr5_4:64010732-64010751 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr5_4:64010841-64010860 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr5_4:64010863-64010882 | None:intergenic | 40.0% | |
| !! | TCGTATCGATTTCGGTCACT+GGG | + | chr5_4:64009962-64009981 | None:intergenic | 45.0% |
| !! | ATCGTATCGATTTCGGTCAC+TGG | + | chr5_4:64009963-64009982 | None:intergenic | 45.0% |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr5_4:64009988-64010007 | Msa0863890:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | + | chr5_4:64010153-64010172 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | + | chr5_4:64010154-64010173 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr5_4:64010175-64010194 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr5_4:64010172-64010191 | Msa0863890:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr5_4:64010285-64010304 | Msa0863890:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr5_4:64010286-64010305 | Msa0863890:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr5_4:64010385-64010404 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr5_4:64010386-64010405 | None:intergenic | 45.0% |
| ! | GGTTCATCGCATTGTTGTTC+CGG | - | chr5_4:64010412-64010431 | Msa0863890:CDS | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr5_4:64010434-64010453 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr5_4:64010464-64010483 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr5_4:64010512-64010531 | Msa0863890:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr5_4:64010723-64010742 | Msa0863890:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr5_4:64010751-64010770 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr5_4:64010748-64010767 | Msa0863890:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr5_4:64010751-64010770 | Msa0863890:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr5_4:64010757-64010776 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr5_4:64010754-64010773 | Msa0863890:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr5_4:64010758-64010777 | Msa0863890:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr5_4:64010759-64010778 | Msa0863890:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr5_4:64010782-64010801 | Msa0863890:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr5_4:64010793-64010812 | Msa0863890:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr5_4:64010864-64010883 | None:intergenic | 45.0% | |
| !! | TCGTATCGATTTCGGTCACT+GGG | + | chr5_4:64009962-64009981 | None:intergenic | 45.0% |
| !! | ATCGTATCGATTTCGGTCAC+TGG | + | chr5_4:64009963-64009982 | None:intergenic | 45.0% |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr5_4:64009988-64010007 | Msa0863890:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | + | chr5_4:64010153-64010172 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | + | chr5_4:64010154-64010173 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr5_4:64010175-64010194 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr5_4:64010172-64010191 | Msa0863890:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr5_4:64010285-64010304 | Msa0863890:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr5_4:64010286-64010305 | Msa0863890:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr5_4:64010385-64010404 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr5_4:64010386-64010405 | None:intergenic | 45.0% |
| ! | GGTTCATCGCATTGTTGTTC+CGG | - | chr5_4:64010412-64010431 | Msa0863890:CDS | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr5_4:64010434-64010453 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr5_4:64010464-64010483 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr5_4:64010512-64010531 | Msa0863890:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr5_4:64010723-64010742 | Msa0863890:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr5_4:64010751-64010770 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr5_4:64010748-64010767 | Msa0863890:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr5_4:64010751-64010770 | Msa0863890:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr5_4:64010757-64010776 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr5_4:64010754-64010773 | Msa0863890:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr5_4:64010758-64010777 | Msa0863890:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr5_4:64010759-64010778 | Msa0863890:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr5_4:64010782-64010801 | Msa0863890:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr5_4:64010793-64010812 | Msa0863890:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr5_4:64010864-64010883 | None:intergenic | 45.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr5_4:64009957-64009976 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr5_4:64009958-64009977 | None:intergenic | 50.0% |
| TTGTTCCGGTCACCCTTGAT+TGG | - | chr5_4:64010426-64010445 | Msa0863890:CDS | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr5_4:64010457-64010476 | Msa0863890:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr5_4:64010774-64010793 | Msa0863890:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr5_4:64010792-64010811 | Msa0863890:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr5_4:64010826-64010845 | Msa0863890:intron | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr5_4:64009957-64009976 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr5_4:64009958-64009977 | None:intergenic | 50.0% |
| TTGTTCCGGTCACCCTTGAT+TGG | - | chr5_4:64010426-64010445 | Msa0863890:CDS | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr5_4:64010457-64010476 | Msa0863890:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr5_4:64010774-64010793 | Msa0863890:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr5_4:64010792-64010811 | Msa0863890:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr5_4:64010826-64010845 | Msa0863890:intron | 50.0% |
| GGCTTTCCACCATAACGACG+TGG | - | chr5_4:64009792-64009811 | Msa0863890:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | + | chr5_4:64009804-64009823 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr5_4:64009948-64009967 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr5_4:64010768-64010787 | Msa0863890:intron | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | - | chr5_4:64009792-64009811 | Msa0863890:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | + | chr5_4:64009804-64009823 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr5_4:64009948-64009967 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr5_4:64010768-64010787 | Msa0863890:intron | 55.0% | |
| GCATCGCCACGTCGTTATGG+TGG | + | chr5_4:64009801-64009820 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr5_4:64010804-64010823 | Msa0863890:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr5_4:64010811-64010830 | Msa0863890:intron | 60.0% |
| GCATCGCCACGTCGTTATGG+TGG | + | chr5_4:64009801-64009820 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr5_4:64010804-64010823 | Msa0863890:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr5_4:64010811-64010830 | Msa0863890:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 64009790 | 64010888 | 64009790 | ID=Msa0863890;Name=Msa0863890 |
| chr5_4 | mRNA | 64009790 | 64010888 | 64009790 | ID=Msa0863890-mRNA-1;Parent=Msa0863890;Name=Msa0863890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr5_4 | exon | 64010837 | 64010888 | 64010837 | ID=Msa0863890-mRNA-1:exon:20144;Parent=Msa0863890-mRNA-1 |
| chr5_4 | exon | 64010620 | 64010735 | 64010620 | ID=Msa0863890-mRNA-1:exon:20143;Parent=Msa0863890-mRNA-1 |
| chr5_4 | exon | 64010137 | 64010556 | 64010137 | ID=Msa0863890-mRNA-1:exon:20142;Parent=Msa0863890-mRNA-1 |
| chr5_4 | exon | 64009790 | 64010044 | 64009790 | ID=Msa0863890-mRNA-1:exon:20141;Parent=Msa0863890-mRNA-1 |
| chr5_4 | CDS | 64010837 | 64010888 | 64010837 | ID=Msa0863890-mRNA-1:cds;Parent=Msa0863890-mRNA-1 |
| chr5_4 | CDS | 64010620 | 64010735 | 64010620 | ID=Msa0863890-mRNA-1:cds;Parent=Msa0863890-mRNA-1 |
| chr5_4 | CDS | 64010137 | 64010556 | 64010137 | ID=Msa0863890-mRNA-1:cds;Parent=Msa0863890-mRNA-1 |
| chr5_4 | CDS | 64009790 | 64010044 | 64009790 | ID=Msa0863890-mRNA-1:cds;Parent=Msa0863890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
