Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627670 | KEH43958.1 | 84.946 | 279 | 36 | 1 | 1 | 279 | 1 | 273 | 1.66e-178 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627670 | G8A101 | 84.946 | 279 | 36 | 1 | 1 | 279 | 1 | 273 | 7.95e-179 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0627670 | 0.857052 | 2.121530e-62 | -8.615850e-47 |
| Msa0627670 | Msa0863890 | 0.870502 | 1.390275e-66 | -8.615850e-47 |
| Msa0627670 | Msa0875260 | 0.884769 | 1.444710e-71 | -8.615850e-47 |
| Msa0627670 | Msa0993030 | 0.895865 | 6.379961e-76 | -8.615850e-47 |
| Msa0627670 | Msa1108650 | 0.842547 | 2.419896e-58 | -8.615850e-47 |
| Msa0627670 | Msa1419030 | 0.871905 | 4.785889e-67 | -8.615850e-47 |
| Msa0502160 | Msa0627670 | 0.814332 | 1.626046e-51 | -8.615850e-47 |
| Msa0514760 | Msa0627670 | 0.897802 | 9.877506e-77 | -8.615850e-47 |
| Msa0541200 | Msa0627670 | 0.818810 | 1.614146e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627670 | MtrunA17_Chr1g0206471 | 84.946 | 279 | 36 | 1 | 1 | 279 | 1 | 273 | 0.0 | 503 |
| Msa0627670 | MtrunA17_Chr7g0270401 | 53.160 | 269 | 120 | 1 | 11 | 279 | 10 | 272 | 1.21e-98 | 290 |
| Msa0627670 | MtrunA17_Chr1g0193281 | 46.632 | 193 | 92 | 4 | 9 | 196 | 8 | 194 | 5.74e-53 | 171 |
| Msa0627670 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 1.53e-39 | 136 |
| Msa0627670 | MtrunA17_Chr1g0207921 | 38.961 | 77 | 47 | 0 | 202 | 278 | 121 | 197 | 1.93e-11 | 62.0 |
| Msa0627670 | MtrunA17_Chr7g0228461 | 56.780 | 118 | 50 | 1 | 60 | 176 | 1 | 118 | 1.62e-38 | 133 |
| Msa0627670 | MtrunA17_Chr7g0234161 | 57.407 | 108 | 46 | 0 | 137 | 244 | 16 | 123 | 2.59e-37 | 128 |
| Msa0627670 | MtrunA17_Chr3g0123031 | 55.556 | 108 | 30 | 2 | 172 | 279 | 1 | 90 | 2.26e-31 | 112 |
| Msa0627670 | MtrunA17_Chr6g0473661 | 28.340 | 247 | 155 | 6 | 38 | 275 | 229 | 462 | 1.22e-24 | 102 |
| Msa0627670 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 6.02e-23 | 92.8 |
| Msa0627670 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 3.76e-12 | 63.5 |
| Msa0627670 | MtrunA17_Chr8g0359311 | 48.193 | 83 | 43 | 0 | 197 | 279 | 17 | 99 | 8.57e-23 | 90.1 |
| Msa0627670 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 2.50e-21 | 85.9 |
| Msa0627670 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 4.82e-21 | 84.7 |
| Msa0627670 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 4.72e-14 | 67.0 |
| Msa0627670 | MtrunA17_Chr7g0237161 | 38.272 | 81 | 50 | 0 | 180 | 260 | 3 | 83 | 6.64e-13 | 63.2 |
| Msa0627670 | MtrunA17_Chr6g0473651 | 30.405 | 148 | 84 | 3 | 116 | 256 | 23 | 158 | 9.37e-13 | 67.8 |
| Msa0627670 | MtrunA17_Chr6g0473651 | 28.571 | 147 | 91 | 2 | 61 | 206 | 228 | 361 | 2.64e-12 | 66.2 |
| Msa0627670 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 2.00e-12 | 62.8 |
| Msa0627670 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 5.28e-11 | 60.1 |
| Msa0627670 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 8.79e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 4_3:+8082289 | Msa0627670:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 4_3:-8082372 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 4_3:+8082754 | Msa0627670:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 4_3:+8082674 | Msa0627670:CDS |
| GGTTCATCGCAATGCTGTTC+TGG | 0.329720 | 4_3:+8082397 | Msa0627670:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 4_3:-8082740 | None:intergenic |
| CTGTTCTGGTCACCCTTGAT+TGG | 0.338473 | 4_3:+8082411 | Msa0627670:CDS |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 4_3:+8082296 | Msa0627670:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 4_3:-8082182 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 4_3:-8082824 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 4_3:+8082614 | Msa0627670:intron |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 4_3:+8082271 | Msa0627670:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 4_3:+8081805 | Msa0627670:CDS |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 4_3:-8081939 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 4_3:-8081952 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 4_3:+8082812 | Msa0627670:CDS |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 4_3:+8082423 | Msa0627670:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 4_3:+8082270 | Msa0627670:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 4_3:+8082745 | Msa0627670:CDS |
| AGAGCATCGCCACGTCGTTA+TGG | 0.401580 | 4_3:-8081786 | None:intergenic |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 4_3:-8081945 | None:intergenic |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 4_3:+8082224 | Msa0627670:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 4_3:+8082290 | Msa0627670:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 4_3:+8082329 | Msa0627670:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 4_3:-8081983 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 4_3:-8081940 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 4_3:+8082768 | Msa0627670:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 4_3:-8082367 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 4_3:+8082187 | Msa0627670:CDS |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 4_3:-8082151 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 4_3:+8082734 | Msa0627670:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 4_3:-8082368 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 4_3:+8082263 | Msa0627670:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 4_3:+8082324 | Msa0627670:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 4_3:-8082157 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 4_3:+8081973 | Msa0627670:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 4_3:-8082424 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 4_3:+8082497 | Msa0627670:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 4_3:-8082446 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 4_3:-8082440 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 4_3:+8082305 | Msa0627670:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 4_3:+8082684 | Msa0627670:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 4_3:+8082744 | Msa0627670:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 4_3:+8082223 | Msa0627670:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 4_3:-8082734 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 4_3:+8082737 | Msa0627670:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 4_3:+8082797 | Msa0627670:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 4_3:+8082195 | Msa0627670:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 4_3:-8082223 | None:intergenic |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 4_3:+8082740 | Msa0627670:CDS |
| GCATCGCCACGTCGTTATGG+TGG | 0.543846 | 4_3:-8081783 | None:intergenic |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 4_3:+8082228 | Msa0627670:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 4_3:-8082835 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 4_3:+8082154 | Msa0627670:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 4_3:-8081944 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 4_3:+8082300 | Msa0627670:CDS |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 4_3:-8081930 | None:intergenic |
| GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | 4_3:-8082136 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 4_3:+8082664 | Msa0627670:CDS |
| CGATGAACCCTAAAATTCAT+CGG | 0.585773 | 4_3:-8082383 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | 4_3:-8082135 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 4_3:+8082790 | Msa0627670:CDS |
| AACGAATCACACAGAAGTAG+AGG | 0.592830 | 4_3:-8082847 | None:intergenic |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 4_3:+8081983 | Msa0627670:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 4_3:+8082760 | Msa0627670:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 4_3:-8082379 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 4_3:-8082259 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 4_3:+8082205 | Msa0627670:CDS |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | 4_3:-8082122 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 4_3:+8082157 | Msa0627670:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 4_3:-8082423 | None:intergenic |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 4_3:-8082380 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 4_3:+8082661 | Msa0627670:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.653625 | 4_3:-8082846 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 4_3:+8082206 | Msa0627670:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 4_3:+8082779 | Msa0627670:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 4_3:+8082442 | Msa0627670:CDS |
| ATACATGGTTGAAGTTGACG+TGG | 0.694095 | 4_3:+8081998 | Msa0627670:CDS |
| GGCTTTCCACCATAACGACG+TGG | 0.714975 | 4_3:+8081777 | Msa0627670:CDS |
| GTTGACGTGGAATATGTGTG+TGG | 0.716345 | 4_3:+8082011 | Msa0627670:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 4_3:+8082207 | Msa0627670:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 4_3:+8082778 | Msa0627670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAAA+TGG | - | chr4_3:8082060-8082079 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAGAATAACAAA+TGG | - | chr4_3:8082060-8082079 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTATGTTTTTTC+AGG | + | chr4_3:8082598-8082617 | Msa0627670:intron | 15.0% |
| !!! | CATTTTTTTTATGTTTTTTC+AGG | + | chr4_3:8082598-8082617 | Msa0627670:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr4_3:8081869-8081888 | None:intergenic | 20.0% |
| !! | AAAAAAGAATAACAAATGGA+AGG | - | chr4_3:8082056-8082075 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | - | chr4_3:8081869-8081888 | None:intergenic | 20.0% |
| !! | AAAAAAGAATAACAAATGGA+AGG | - | chr4_3:8082056-8082075 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr4_3:8081870-8081889 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr4_3:8081870-8081889 | Msa0627670:intron | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr4_3:8082083-8082102 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr4_3:8082084-8082103 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr4_3:8082085-8082104 | Msa0627670:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr4_3:8082086-8082105 | Msa0627670:intron | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | - | chr4_3:8081870-8081889 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | + | chr4_3:8081870-8081889 | Msa0627670:intron | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | - | chr4_3:8082083-8082102 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | - | chr4_3:8082084-8082103 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | + | chr4_3:8082085-8082104 | Msa0627670:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | + | chr4_3:8082086-8082105 | Msa0627670:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr4_3:8081882-8081901 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr4_3:8081955-8081974 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr4_3:8082185-8082204 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr4_3:8082224-8082243 | Msa0627670:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr4_3:8082289-8082308 | Msa0627670:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr4_3:8082290-8082309 | Msa0627670:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr4_3:8082296-8082315 | Msa0627670:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr4_3:8082324-8082343 | Msa0627670:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr4_3:8082329-8082348 | Msa0627670:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr4_3:8082505-8082524 | Msa0627670:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | chr4_3:8082569-8082588 | Msa0627670:intron | 30.0% |
| !!! | TGATATTGGTTTTGCACAAA+TGG | + | chr4_3:8082628-8082647 | Msa0627670:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr4_3:8082661-8082680 | Msa0627670:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | - | chr4_3:8081882-8081901 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | - | chr4_3:8081955-8081974 | None:intergenic | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | - | chr4_3:8082185-8082204 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | + | chr4_3:8082224-8082243 | Msa0627670:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | + | chr4_3:8082289-8082308 | Msa0627670:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | + | chr4_3:8082290-8082309 | Msa0627670:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | + | chr4_3:8082296-8082315 | Msa0627670:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | + | chr4_3:8082324-8082343 | Msa0627670:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | + | chr4_3:8082329-8082348 | Msa0627670:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | + | chr4_3:8082505-8082524 | Msa0627670:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | + | chr4_3:8082569-8082588 | Msa0627670:intron | 30.0% |
| !!! | TGATATTGGTTTTGCACAAA+TGG | + | chr4_3:8082628-8082647 | Msa0627670:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | + | chr4_3:8082661-8082680 | Msa0627670:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr4_3:8081805-8081824 | Msa0627670:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr4_3:8081986-8082005 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr4_3:8081983-8082002 | Msa0627670:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr4_3:8082022-8082041 | Msa0627670:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr4_3:8082125-8082144 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr4_3:8082125-8082144 | Msa0627670:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr4_3:8082226-8082245 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr4_3:8082223-8082242 | Msa0627670:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | chr4_3:8082228-8082247 | Msa0627670:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr4_3:8082262-8082281 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr4_3:8082263-8082282 | Msa0627670:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr4_3:8082300-8082319 | Msa0627670:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr4_3:8082305-8082324 | Msa0627670:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | chr4_3:8082375-8082394 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | chr4_3:8082375-8082394 | Msa0627670:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | chr4_3:8082376-8082395 | Msa0627670:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr4_3:8082386-8082405 | None:intergenic | 35.0% | |
| !!! | GTGGATTTTTGGTACATGTT+AGG | + | chr4_3:8082516-8082535 | Msa0627670:intron | 35.0% |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr4_3:8082614-8082633 | Msa0627670:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr4_3:8082664-8082683 | Msa0627670:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr4_3:8082717-8082736 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr4_3:8082838-8082857 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | + | chr4_3:8081805-8081824 | Msa0627670:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | - | chr4_3:8081986-8082005 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | + | chr4_3:8081983-8082002 | Msa0627670:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | + | chr4_3:8082022-8082041 | Msa0627670:CDS | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | - | chr4_3:8082125-8082144 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | + | chr4_3:8082125-8082144 | Msa0627670:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | - | chr4_3:8082226-8082245 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | + | chr4_3:8082223-8082242 | Msa0627670:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | + | chr4_3:8082228-8082247 | Msa0627670:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | - | chr4_3:8082262-8082281 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | + | chr4_3:8082263-8082282 | Msa0627670:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | + | chr4_3:8082300-8082319 | Msa0627670:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | + | chr4_3:8082305-8082324 | Msa0627670:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | - | chr4_3:8082375-8082394 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | + | chr4_3:8082375-8082394 | Msa0627670:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | + | chr4_3:8082376-8082395 | Msa0627670:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | - | chr4_3:8082386-8082405 | None:intergenic | 35.0% | |
| !!! | GTGGATTTTTGGTACATGTT+AGG | + | chr4_3:8082516-8082535 | Msa0627670:intron | 35.0% |
| !! | TTTCAGGAACTTGCTGATAT+TGG | + | chr4_3:8082614-8082633 | Msa0627670:intron | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | + | chr4_3:8082664-8082683 | Msa0627670:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | - | chr4_3:8082717-8082736 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | - | chr4_3:8082838-8082857 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr4_3:8081888-8081907 | Msa0627670:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr4_3:8081947-8081966 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr4_3:8081948-8081967 | None:intergenic | 40.0% |
| ATACATGGTTGAAGTTGACG+TGG | + | chr4_3:8081998-8082017 | Msa0627670:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | chr4_3:8082154-8082173 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr4_3:8082154-8082173 | Msa0627670:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr4_3:8082187-8082206 | Msa0627670:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr4_3:8082195-8082214 | Msa0627670:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr4_3:8082206-8082225 | Msa0627670:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr4_3:8082207-8082226 | Msa0627670:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | chr4_3:8082382-8082401 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | chr4_3:8082383-8082402 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr4_3:8082426-8082445 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCACAAATGGCTT+TGG | + | chr4_3:8082634-8082653 | Msa0627670:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr4_3:8082674-8082693 | Msa0627670:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr4_3:8082684-8082703 | Msa0627670:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr4_3:8082718-8082737 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr4_3:8082827-8082846 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr4_3:8082849-8082868 | None:intergenic | 40.0% | |
| AACGAATCACACAGAAGTAG+AGG | - | chr4_3:8082850-8082869 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | + | chr4_3:8081888-8081907 | Msa0627670:intron | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | - | chr4_3:8081947-8081966 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | - | chr4_3:8081948-8081967 | None:intergenic | 40.0% |
| ATACATGGTTGAAGTTGACG+TGG | + | chr4_3:8081998-8082017 | Msa0627670:CDS | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | - | chr4_3:8082154-8082173 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | + | chr4_3:8082154-8082173 | Msa0627670:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | + | chr4_3:8082187-8082206 | Msa0627670:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | + | chr4_3:8082195-8082214 | Msa0627670:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | + | chr4_3:8082206-8082225 | Msa0627670:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | + | chr4_3:8082207-8082226 | Msa0627670:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | - | chr4_3:8082382-8082401 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | - | chr4_3:8082383-8082402 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | - | chr4_3:8082426-8082445 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCACAAATGGCTT+TGG | + | chr4_3:8082634-8082653 | Msa0627670:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | + | chr4_3:8082674-8082693 | Msa0627670:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | + | chr4_3:8082684-8082703 | Msa0627670:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | - | chr4_3:8082718-8082737 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | - | chr4_3:8082827-8082846 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | - | chr4_3:8082849-8082868 | None:intergenic | 40.0% | |
| AACGAATCACACAGAAGTAG+AGG | - | chr4_3:8082850-8082869 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr4_3:8081973-8081992 | Msa0627670:CDS | 45.0% | |
| GTTGACGTGGAATATGTGTG+TGG | + | chr4_3:8082011-8082030 | Msa0627670:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | chr4_3:8082138-8082157 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | chr4_3:8082139-8082158 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr4_3:8082160-8082179 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr4_3:8082157-8082176 | Msa0627670:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr4_3:8082205-8082224 | Msa0627670:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr4_3:8082270-8082289 | Msa0627670:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr4_3:8082271-8082290 | Msa0627670:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr4_3:8082370-8082389 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr4_3:8082371-8082390 | None:intergenic | 45.0% |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr4_3:8082423-8082442 | Msa0627670:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr4_3:8082427-8082446 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr4_3:8082449-8082468 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr4_3:8082497-8082516 | Msa0627670:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr4_3:8082709-8082728 | Msa0627670:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr4_3:8082737-8082756 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr4_3:8082734-8082753 | Msa0627670:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr4_3:8082737-8082756 | Msa0627670:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr4_3:8082743-8082762 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr4_3:8082740-8082759 | Msa0627670:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr4_3:8082744-8082763 | Msa0627670:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr4_3:8082745-8082764 | Msa0627670:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | chr4_3:8082768-8082787 | Msa0627670:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | chr4_3:8082779-8082798 | Msa0627670:CDS | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | + | chr4_3:8081973-8081992 | Msa0627670:CDS | 45.0% | |
| GTTGACGTGGAATATGTGTG+TGG | + | chr4_3:8082011-8082030 | Msa0627670:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | - | chr4_3:8082138-8082157 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | - | chr4_3:8082139-8082158 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | - | chr4_3:8082160-8082179 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | + | chr4_3:8082157-8082176 | Msa0627670:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | + | chr4_3:8082205-8082224 | Msa0627670:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | + | chr4_3:8082270-8082289 | Msa0627670:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | + | chr4_3:8082271-8082290 | Msa0627670:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | - | chr4_3:8082370-8082389 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | - | chr4_3:8082371-8082390 | None:intergenic | 45.0% |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | + | chr4_3:8082423-8082442 | Msa0627670:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | - | chr4_3:8082427-8082446 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | - | chr4_3:8082449-8082468 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | + | chr4_3:8082497-8082516 | Msa0627670:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | + | chr4_3:8082709-8082728 | Msa0627670:CDS | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | - | chr4_3:8082737-8082756 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | + | chr4_3:8082734-8082753 | Msa0627670:CDS | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | + | chr4_3:8082737-8082756 | Msa0627670:CDS | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | - | chr4_3:8082743-8082762 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | + | chr4_3:8082740-8082759 | Msa0627670:CDS | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | + | chr4_3:8082744-8082763 | Msa0627670:CDS | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | + | chr4_3:8082745-8082764 | Msa0627670:CDS | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | + | chr4_3:8082768-8082787 | Msa0627670:CDS | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | + | chr4_3:8082779-8082798 | Msa0627670:CDS | 45.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr4_3:8081942-8081961 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr4_3:8081943-8081962 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+TGG | + | chr4_3:8082397-8082416 | Msa0627670:CDS | 50.0% | |
| CTGTTCTGGTCACCCTTGAT+TGG | + | chr4_3:8082411-8082430 | Msa0627670:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr4_3:8082443-8082462 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr4_3:8082442-8082461 | Msa0627670:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | chr4_3:8082760-8082779 | Msa0627670:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | chr4_3:8082778-8082797 | Msa0627670:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr4_3:8082812-8082831 | Msa0627670:CDS | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | - | chr4_3:8081942-8081961 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | - | chr4_3:8081943-8081962 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+TGG | + | chr4_3:8082397-8082416 | Msa0627670:CDS | 50.0% | |
| CTGTTCTGGTCACCCTTGAT+TGG | + | chr4_3:8082411-8082430 | Msa0627670:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | - | chr4_3:8082443-8082462 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | + | chr4_3:8082442-8082461 | Msa0627670:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | + | chr4_3:8082760-8082779 | Msa0627670:CDS | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | + | chr4_3:8082778-8082797 | Msa0627670:CDS | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | + | chr4_3:8082812-8082831 | Msa0627670:CDS | 50.0% |
| GGCTTTCCACCATAACGACG+TGG | + | chr4_3:8081777-8081796 | Msa0627670:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | - | chr4_3:8081789-8081808 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr4_3:8081933-8081952 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr4_3:8082754-8082773 | Msa0627670:CDS | 55.0% | |
| GGCTTTCCACCATAACGACG+TGG | + | chr4_3:8081777-8081796 | Msa0627670:CDS | 55.0% | |
| !! | AGAGCATCGCCACGTCGTTA+TGG | - | chr4_3:8081789-8081808 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | - | chr4_3:8081933-8081952 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | + | chr4_3:8082754-8082773 | Msa0627670:CDS | 55.0% | |
| GCATCGCCACGTCGTTATGG+TGG | - | chr4_3:8081786-8081805 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr4_3:8082790-8082809 | Msa0627670:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr4_3:8082797-8082816 | Msa0627670:CDS | 60.0% |
| GCATCGCCACGTCGTTATGG+TGG | - | chr4_3:8081786-8081805 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | + | chr4_3:8082790-8082809 | Msa0627670:CDS | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | + | chr4_3:8082797-8082816 | Msa0627670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 8081775 | 8082874 | 8081775 | ID=Msa0627670;Name=Msa0627670 |
| chr4_3 | mRNA | 8081775 | 8082874 | 8081775 | ID=Msa0627670-mRNA-1;Parent=Msa0627670;Name=Msa0627670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr4_3 | exon | 8081775 | 8081826 | 8081775 | ID=Msa0627670-mRNA-1:exon:2297;Parent=Msa0627670-mRNA-1 |
| chr4_3 | exon | 8081928 | 8082043 | 8081928 | ID=Msa0627670-mRNA-1:exon:2298;Parent=Msa0627670-mRNA-1 |
| chr4_3 | exon | 8082107 | 8082526 | 8082107 | ID=Msa0627670-mRNA-1:exon:2299;Parent=Msa0627670-mRNA-1 |
| chr4_3 | exon | 8082620 | 8082874 | 8082620 | ID=Msa0627670-mRNA-1:exon:2300;Parent=Msa0627670-mRNA-1 |
| chr4_3 | CDS | 8081775 | 8081826 | 8081775 | ID=Msa0627670-mRNA-1:cds;Parent=Msa0627670-mRNA-1 |
| chr4_3 | CDS | 8081928 | 8082043 | 8081928 | ID=Msa0627670-mRNA-1:cds;Parent=Msa0627670-mRNA-1 |
| chr4_3 | CDS | 8082107 | 8082526 | 8082107 | ID=Msa0627670-mRNA-1:cds;Parent=Msa0627670-mRNA-1 |
| chr4_3 | CDS | 8082620 | 8082874 | 8082620 | ID=Msa0627670-mRNA-1:cds;Parent=Msa0627670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
