Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541200 | KEH43958.1 | 82.500 | 280 | 39 | 2 | 1 | 276 | 1 | 274 | 3.93e-171 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541200 | G8A101 | 82.500 | 280 | 39 | 2 | 1 | 276 | 1 | 274 | 1.88e-171 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0541200 | 0.857917 | 1.176799e-62 | -8.615850e-47 |
| Msa0502160 | Msa0541200 | 0.800151 | 1.648660e-48 | -8.615850e-47 |
| Msa0514760 | Msa0541200 | 0.852229 | 5.295361e-61 | -8.615850e-47 |
| Msa0541200 | Msa0627670 | 0.818810 | 1.614146e-52 | -8.615850e-47 |
| Msa0541200 | Msa0863890 | 0.915343 | 6.586188e-85 | -8.615850e-47 |
| Msa0541200 | Msa0875260 | 0.851113 | 1.096321e-60 | -8.615850e-47 |
| Msa0541200 | Msa0993030 | 0.850702 | 1.431838e-60 | -8.615850e-47 |
| Msa0541200 | Msa1108650 | 0.880001 | 7.859039e-70 | -8.615850e-47 |
| Msa0541200 | Msa1419030 | 0.828650 | 7.990333e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541200 | MtrunA17_Chr1g0206471 | 82.500 | 280 | 39 | 2 | 1 | 276 | 1 | 274 | 3.62e-175 | 484 |
| Msa0541200 | MtrunA17_Chr7g0270401 | 51.111 | 270 | 122 | 2 | 11 | 276 | 10 | 273 | 1.10e-92 | 275 |
| Msa0541200 | MtrunA17_Chr1g0193281 | 46.354 | 192 | 92 | 2 | 9 | 195 | 8 | 193 | 3.82e-53 | 171 |
| Msa0541200 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 5.91e-40 | 137 |
| Msa0541200 | MtrunA17_Chr1g0207921 | 40.845 | 71 | 42 | 0 | 204 | 274 | 127 | 197 | 3.75e-11 | 61.2 |
| Msa0541200 | MtrunA17_Chr7g0228461 | 63.265 | 98 | 35 | 1 | 60 | 156 | 1 | 98 | 1.69e-37 | 130 |
| Msa0541200 | MtrunA17_Chr7g0234161 | 53.704 | 108 | 46 | 1 | 137 | 240 | 16 | 123 | 3.37e-32 | 115 |
| Msa0541200 | MtrunA17_Chr3g0123031 | 53.333 | 105 | 35 | 1 | 172 | 276 | 1 | 91 | 3.50e-31 | 111 |
| Msa0541200 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 2.31e-23 | 93.6 |
| Msa0541200 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 198 | 274 | 92 | 168 | 3.50e-12 | 63.5 |
| Msa0541200 | MtrunA17_Chr5g0421721 | 53.165 | 79 | 31 | 1 | 16 | 94 | 15 | 87 | 3.47e-22 | 88.2 |
| Msa0541200 | MtrunA17_Chr5g0423431 | 51.852 | 81 | 33 | 1 | 6 | 86 | 5 | 79 | 3.49e-21 | 85.1 |
| Msa0541200 | MtrunA17_Chr8g0359311 | 46.154 | 78 | 42 | 0 | 198 | 275 | 22 | 99 | 3.57e-21 | 85.9 |
| Msa0541200 | MtrunA17_Chr6g0473661 | 26.829 | 246 | 156 | 6 | 38 | 271 | 229 | 462 | 2.00e-20 | 90.5 |
| Msa0541200 | MtrunA17_Chr3g0083241 | 61.538 | 52 | 20 | 0 | 1 | 52 | 54 | 105 | 4.55e-14 | 67.0 |
| Msa0541200 | MtrunA17_Chr4g0054601 | 30.864 | 81 | 56 | 0 | 72 | 152 | 2 | 82 | 6.12e-12 | 61.2 |
| Msa0541200 | MtrunA17_Chr6g0473651 | 33.684 | 95 | 62 | 1 | 61 | 154 | 228 | 322 | 1.37e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 4_1:-24731536 | Msa0541200:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 4_1:+24731453 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 4_1:-24731073 | Msa0541200:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 4_1:-24731153 | Msa0541200:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 4_1:+24731087 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 4_1:-24731529 | Msa0541200:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 4_1:+24731643 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 4_1:+24731003 | None:intergenic |
| ATTAGAATCAAGAACAAGTT+TGG | 0.346076 | 4_1:-24731496 | Msa0541200:CDS |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 4_1:-24731554 | Msa0541200:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 4_1:-24732020 | Msa0541200:intron |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 4_1:+24731886 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 4_1:+24731873 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 4_1:-24731015 | Msa0541200:CDS |
| GGTTTATCGCAATGTTGTTC+CGG | 0.392012 | 4_1:-24731428 | Msa0541200:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 4_1:-24731555 | Msa0541200:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 4_1:-24731082 | Msa0541200:CDS |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 4_1:+24731880 | None:intergenic |
| TTGTTCCGGTCACCCTTGAT+TGG | 0.411389 | 4_1:-24731414 | Msa0541200:CDS |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 4_1:-24731601 | Msa0541200:CDS |
| CCCTTGATTGGTTTGTTCAA+AGG | 0.416754 | 4_1:-24731402 | Msa0541200:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 4_1:-24731535 | Msa0541200:CDS |
| CCATGTATGTCCTATACTTA+AGG | 0.423908 | 4_1:+24731842 | None:intergenic |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 4_1:+24731885 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 4_1:-24731059 | Msa0541200:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 4_1:+24731458 | None:intergenic |
| GCCTTTGAACAAACCAATCA+AGG | 0.439936 | 4_1:+24731401 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 4_1:-24731638 | Msa0541200:CDS |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 4_1:+24731674 | None:intergenic |
| GCATCGCCACGTCGTTATGA+TGG | 0.448641 | 4_1:+24732042 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 4_1:-24731093 | Msa0541200:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 4_1:+24731457 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 4_1:-24731562 | Msa0541200:CDS |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 4_1:+24731668 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470020 | 4_1:-24731852 | Msa0541200:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 4_1:+24731379 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 4_1:-24731520 | Msa0541200:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 4_1:-24731143 | Msa0541200:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 4_1:-24731083 | Msa0541200:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 4_1:-24731602 | Msa0541200:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 4_1:+24731093 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+TGG | 0.517909 | 4_1:+24731690 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 4_1:-24731090 | Msa0541200:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 4_1:-24731030 | Msa0541200:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 4_1:-24731630 | Msa0541200:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 4_1:+24731602 | None:intergenic |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 4_1:-24731087 | Msa0541200:CDS |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 4_1:-24731597 | Msa0541200:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 4_1:+24730992 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 4_1:-24731671 | Msa0541200:CDS |
| CGATAAACCCTAAAATTCAT+CGG | 0.558540 | 4_1:+24731442 | None:intergenic |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 4_1:+24731881 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 4_1:-24731525 | Msa0541200:CDS |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 4_1:+24731895 | None:intergenic |
| AAACCCTAAAATTCATCGGT+GGG | 0.576563 | 4_1:+24731446 | None:intergenic |
| ACAAACCAATCAAGGGTGAC+CGG | 0.584526 | 4_1:+24731409 | None:intergenic |
| AGAAAATTCGATAATAGATG+TGG | 0.592160 | 4_1:-24731166 | Msa0541200:CDS |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 4_1:-24731037 | Msa0541200:CDS |
| CCTTAAGTATAGGACATACA+TGG | 0.594115 | 4_1:-24731842 | Msa0541200:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 4_1:-24731067 | Msa0541200:CDS |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 4_1:+24730980 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 4_1:+24731566 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 4_1:-24731620 | Msa0541200:CDS |
| AAATCACTGGAAAACATCAT+CGG | 0.616708 | 4_1:+24731703 | None:intergenic |
| AAATTCGATAATAGATGTGG+TGG | 0.617372 | 4_1:-24731163 | Msa0541200:CDS |
| TAAACCCTAAAATTCATCGG+TGG | 0.619727 | 4_1:+24731445 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 4_1:-24731668 | Msa0541200:CDS |
| CCTTTGAACAAACCAATCAA+GGG | 0.640005 | 4_1:+24731402 | None:intergenic |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 4_1:-24731814 | Msa0541200:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 4_1:+24730981 | None:intergenic |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 4_1:-24731619 | Msa0541200:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 4_1:-24731048 | Msa0541200:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 4_1:-24731383 | Msa0541200:CDS |
| GGCTTTCCATCATAACGACG+TGG | 0.719929 | 4_1:-24732048 | Msa0541200:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 4_1:-24731618 | Msa0541200:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 4_1:-24731049 | Msa0541200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr4_1:24731260-24731279 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr4_1:24731797-24731816 | Msa0541200:intron | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr4_1:24731260-24731279 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr4_1:24731797-24731816 | Msa0541200:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr4_1:24731069-24731088 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr4_1:24731069-24731088 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr4_1:24731070-24731089 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr4_1:24731070-24731089 | Msa0541200:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr4_1:24731256-24731275 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr4_1:24731283-24731302 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr4_1:24731284-24731303 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr4_1:24731285-24731304 | Msa0541200:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr4_1:24731286-24731305 | Msa0541200:intron | 25.0% |
| ! | ATTAGAATCAAGAACAAGTT+TGG | - | chr4_1:24731529-24731548 | Msa0541200:CDS | 25.0% |
| ! | AGAAAATTCGATAATAGATG+TGG | - | chr4_1:24731859-24731878 | Msa0541200:CDS | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr4_1:24731070-24731089 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr4_1:24731070-24731089 | Msa0541200:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr4_1:24731256-24731275 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr4_1:24731283-24731302 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr4_1:24731284-24731303 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr4_1:24731285-24731304 | Msa0541200:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr4_1:24731286-24731305 | Msa0541200:intron | 25.0% |
| ! | ATTAGAATCAAGAACAAGTT+TGG | - | chr4_1:24731529-24731548 | Msa0541200:CDS | 25.0% |
| ! | AGAAAATTCGATAATAGATG+TGG | - | chr4_1:24731859-24731878 | Msa0541200:CDS | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr4_1:24731082-24731101 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr4_1:24731155-24731174 | None:intergenic | 30.0% |
| AAATCACTGGAAAACATCAT+CGG | + | chr4_1:24731325-24731344 | None:intergenic | 30.0% | |
| ! | ATGATGTTTTCCAGTGATTT+TGG | - | chr4_1:24731325-24731344 | Msa0541200:intron | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr4_1:24731385-24731404 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr4_1:24731424-24731443 | Msa0541200:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr4_1:24731489-24731508 | Msa0541200:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr4_1:24731490-24731509 | Msa0541200:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr4_1:24731496-24731515 | Msa0541200:CDS | 30.0% | |
| CGATAAACCCTAAAATTCAT+CGG | + | chr4_1:24731586-24731605 | None:intergenic | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr4_1:24731705-24731724 | Msa0541200:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr4_1:24731769-24731788 | Msa0541200:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr4_1:24731826-24731845 | Msa0541200:CDS | 30.0% |
| AAATTCGATAATAGATGTGG+TGG | - | chr4_1:24731862-24731881 | Msa0541200:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr4_1:24731082-24731101 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr4_1:24731155-24731174 | None:intergenic | 30.0% |
| AAATCACTGGAAAACATCAT+CGG | + | chr4_1:24731325-24731344 | None:intergenic | 30.0% | |
| ! | ATGATGTTTTCCAGTGATTT+TGG | - | chr4_1:24731325-24731344 | Msa0541200:intron | 30.0% |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr4_1:24731385-24731404 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr4_1:24731424-24731443 | Msa0541200:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr4_1:24731489-24731508 | Msa0541200:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr4_1:24731490-24731509 | Msa0541200:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr4_1:24731496-24731515 | Msa0541200:CDS | 30.0% | |
| CGATAAACCCTAAAATTCAT+CGG | + | chr4_1:24731586-24731605 | None:intergenic | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr4_1:24731705-24731724 | Msa0541200:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr4_1:24731769-24731788 | Msa0541200:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr4_1:24731826-24731845 | Msa0541200:CDS | 30.0% |
| AAATTCGATAATAGATGTGG+TGG | - | chr4_1:24731862-24731881 | Msa0541200:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr4_1:24731005-24731024 | Msa0541200:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | + | chr4_1:24731186-24731205 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr4_1:24731183-24731202 | Msa0541200:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr4_1:24731222-24731241 | Msa0541200:intron | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr4_1:24731426-24731445 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr4_1:24731423-24731442 | Msa0541200:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr4_1:24731428-24731447 | Msa0541200:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr4_1:24731462-24731481 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr4_1:24731463-24731482 | Msa0541200:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr4_1:24731500-24731519 | Msa0541200:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr4_1:24731505-24731524 | Msa0541200:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr4_1:24731575-24731594 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr4_1:24731575-24731594 | Msa0541200:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr4_1:24731576-24731595 | Msa0541200:CDS | 35.0% |
| AAACCCTAAAATTCATCGGT+GGG | + | chr4_1:24731582-24731601 | None:intergenic | 35.0% | |
| TAAACCCTAAAATTCATCGG+TGG | + | chr4_1:24731583-24731602 | None:intergenic | 35.0% | |
| CCTTTGAACAAACCAATCAA+GGG | + | chr4_1:24731626-24731645 | None:intergenic | 35.0% | |
| !! | TTTTCAGGAACTGCTGATAT+TGG | - | chr4_1:24731812-24731831 | Msa0541200:CDS | 35.0% |
| AGGATCCATCGAAAAACTAA+GGG | + | chr4_1:24731915-24731934 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr4_1:24732036-24732055 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr4_1:24731005-24731024 | Msa0541200:CDS | 35.0% | |
| CCATGTATGTCCTATACTTA+AGG | + | chr4_1:24731186-24731205 | None:intergenic | 35.0% | |
| CCTTAAGTATAGGACATACA+TGG | - | chr4_1:24731183-24731202 | Msa0541200:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr4_1:24731222-24731241 | Msa0541200:intron | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr4_1:24731426-24731445 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr4_1:24731423-24731442 | Msa0541200:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr4_1:24731428-24731447 | Msa0541200:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr4_1:24731462-24731481 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr4_1:24731463-24731482 | Msa0541200:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr4_1:24731500-24731519 | Msa0541200:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr4_1:24731505-24731524 | Msa0541200:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr4_1:24731575-24731594 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr4_1:24731575-24731594 | Msa0541200:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr4_1:24731576-24731595 | Msa0541200:CDS | 35.0% |
| AAACCCTAAAATTCATCGGT+GGG | + | chr4_1:24731582-24731601 | None:intergenic | 35.0% | |
| TAAACCCTAAAATTCATCGG+TGG | + | chr4_1:24731583-24731602 | None:intergenic | 35.0% | |
| CCTTTGAACAAACCAATCAA+GGG | + | chr4_1:24731626-24731645 | None:intergenic | 35.0% | |
| !! | TTTTCAGGAACTGCTGATAT+TGG | - | chr4_1:24731812-24731831 | Msa0541200:CDS | 35.0% |
| AGGATCCATCGAAAAACTAA+GGG | + | chr4_1:24731915-24731934 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr4_1:24732036-24732055 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr4_1:24731088-24731107 | Msa0541200:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr4_1:24731147-24731166 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr4_1:24731148-24731167 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr4_1:24731211-24731230 | Msa0541200:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr4_1:24731354-24731373 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr4_1:24731354-24731373 | Msa0541200:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr4_1:24731387-24731406 | Msa0541200:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr4_1:24731395-24731414 | Msa0541200:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr4_1:24731406-24731425 | Msa0541200:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr4_1:24731407-24731426 | Msa0541200:CDS | 40.0% | |
| GGTTTATCGCAATGTTGTTC+CGG | - | chr4_1:24731597-24731616 | Msa0541200:CDS | 40.0% | |
| !! | CCCTTGATTGGTTTGTTCAA+AGG | - | chr4_1:24731623-24731642 | Msa0541200:CDS | 40.0% |
| GCCTTTGAACAAACCAATCA+AGG | + | chr4_1:24731627-24731646 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr4_1:24731832-24731851 | Msa0541200:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr4_1:24731872-24731891 | Msa0541200:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr4_1:24731882-24731901 | Msa0541200:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr4_1:24731916-24731935 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr4_1:24732025-24732044 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr4_1:24732047-24732066 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr4_1:24731088-24731107 | Msa0541200:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr4_1:24731147-24731166 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr4_1:24731148-24731167 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr4_1:24731211-24731230 | Msa0541200:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr4_1:24731354-24731373 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr4_1:24731354-24731373 | Msa0541200:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr4_1:24731387-24731406 | Msa0541200:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr4_1:24731395-24731414 | Msa0541200:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr4_1:24731406-24731425 | Msa0541200:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr4_1:24731407-24731426 | Msa0541200:CDS | 40.0% | |
| GGTTTATCGCAATGTTGTTC+CGG | - | chr4_1:24731597-24731616 | Msa0541200:CDS | 40.0% | |
| !! | CCCTTGATTGGTTTGTTCAA+AGG | - | chr4_1:24731623-24731642 | Msa0541200:CDS | 40.0% |
| GCCTTTGAACAAACCAATCA+AGG | + | chr4_1:24731627-24731646 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr4_1:24731832-24731851 | Msa0541200:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr4_1:24731872-24731891 | Msa0541200:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr4_1:24731882-24731901 | Msa0541200:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr4_1:24731916-24731935 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr4_1:24732025-24732044 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr4_1:24732047-24732066 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr4_1:24731173-24731192 | Msa0541200:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+TGG | + | chr4_1:24731338-24731357 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr4_1:24731360-24731379 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr4_1:24731357-24731376 | Msa0541200:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr4_1:24731405-24731424 | Msa0541200:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr4_1:24731470-24731489 | Msa0541200:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr4_1:24731471-24731490 | Msa0541200:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr4_1:24731570-24731589 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr4_1:24731571-24731590 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr4_1:24731619-24731638 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr4_1:24731649-24731668 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr4_1:24731697-24731716 | Msa0541200:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr4_1:24731907-24731926 | Msa0541200:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr4_1:24731935-24731954 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr4_1:24731932-24731951 | Msa0541200:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr4_1:24731935-24731954 | Msa0541200:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr4_1:24731941-24731960 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr4_1:24731938-24731957 | Msa0541200:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr4_1:24731942-24731961 | Msa0541200:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr4_1:24731943-24731962 | Msa0541200:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr4_1:24731966-24731985 | Msa0541200:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr4_1:24731977-24731996 | Msa0541200:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr4_1:24732048-24732067 | None:intergenic | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr4_1:24731173-24731192 | Msa0541200:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+TGG | + | chr4_1:24731338-24731357 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr4_1:24731360-24731379 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr4_1:24731357-24731376 | Msa0541200:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr4_1:24731405-24731424 | Msa0541200:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr4_1:24731470-24731489 | Msa0541200:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr4_1:24731471-24731490 | Msa0541200:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr4_1:24731570-24731589 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr4_1:24731571-24731590 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr4_1:24731619-24731638 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr4_1:24731649-24731668 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr4_1:24731697-24731716 | Msa0541200:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr4_1:24731907-24731926 | Msa0541200:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr4_1:24731935-24731954 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr4_1:24731932-24731951 | Msa0541200:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr4_1:24731935-24731954 | Msa0541200:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr4_1:24731941-24731960 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr4_1:24731938-24731957 | Msa0541200:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr4_1:24731942-24731961 | Msa0541200:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr4_1:24731943-24731962 | Msa0541200:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr4_1:24731966-24731985 | Msa0541200:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr4_1:24731977-24731996 | Msa0541200:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr4_1:24732048-24732067 | None:intergenic | 45.0% | |
| GGCTTTCCATCATAACGACG+TGG | - | chr4_1:24730977-24730996 | Msa0541200:CDS | 50.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr4_1:24731142-24731161 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr4_1:24731143-24731162 | None:intergenic | 50.0% |
| TTGTTCCGGTCACCCTTGAT+TGG | - | chr4_1:24731611-24731630 | Msa0541200:CDS | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr4_1:24731642-24731661 | Msa0541200:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr4_1:24731958-24731977 | Msa0541200:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr4_1:24731976-24731995 | Msa0541200:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr4_1:24732010-24732029 | Msa0541200:intron | 50.0% |
| GGCTTTCCATCATAACGACG+TGG | - | chr4_1:24730977-24730996 | Msa0541200:CDS | 50.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr4_1:24731142-24731161 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr4_1:24731143-24731162 | None:intergenic | 50.0% |
| TTGTTCCGGTCACCCTTGAT+TGG | - | chr4_1:24731611-24731630 | Msa0541200:CDS | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr4_1:24731642-24731661 | Msa0541200:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr4_1:24731958-24731977 | Msa0541200:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr4_1:24731976-24731995 | Msa0541200:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr4_1:24732010-24732029 | Msa0541200:intron | 50.0% |
| GCATCGCCACGTCGTTATGA+TGG | + | chr4_1:24730986-24731005 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr4_1:24731133-24731152 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr4_1:24731952-24731971 | Msa0541200:intron | 55.0% | |
| GCATCGCCACGTCGTTATGA+TGG | + | chr4_1:24730986-24731005 | None:intergenic | 55.0% | |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr4_1:24731133-24731152 | None:intergenic | 55.0% |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr4_1:24731952-24731971 | Msa0541200:intron | 55.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr4_1:24731988-24732007 | Msa0541200:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr4_1:24731995-24732014 | Msa0541200:intron | 60.0% |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr4_1:24731988-24732007 | Msa0541200:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr4_1:24731995-24732014 | Msa0541200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 24730975 | 24732072 | 24730975 | ID=Msa0541200;Name=Msa0541200 |
| chr4_1 | mRNA | 24730975 | 24732072 | 24730975 | ID=Msa0541200-mRNA-1;Parent=Msa0541200;Name=Msa0541200-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.5|1|1|4|0|276 |
| chr4_1 | exon | 24732021 | 24732072 | 24732021 | ID=Msa0541200-mRNA-1:exon:6740;Parent=Msa0541200-mRNA-1 |
| chr4_1 | exon | 24731804 | 24731919 | 24731804 | ID=Msa0541200-mRNA-1:exon:6739;Parent=Msa0541200-mRNA-1 |
| chr4_1 | exon | 24731332 | 24731740 | 24731332 | ID=Msa0541200-mRNA-1:exon:6738;Parent=Msa0541200-mRNA-1 |
| chr4_1 | exon | 24730975 | 24731228 | 24730975 | ID=Msa0541200-mRNA-1:exon:6737;Parent=Msa0541200-mRNA-1 |
| chr4_1 | CDS | 24732021 | 24732072 | 24732021 | ID=Msa0541200-mRNA-1:cds;Parent=Msa0541200-mRNA-1 |
| chr4_1 | CDS | 24731804 | 24731919 | 24731804 | ID=Msa0541200-mRNA-1:cds;Parent=Msa0541200-mRNA-1 |
| chr4_1 | CDS | 24731332 | 24731740 | 24731332 | ID=Msa0541200-mRNA-1:cds;Parent=Msa0541200-mRNA-1 |
| chr4_1 | CDS | 24730975 | 24731228 | 24730975 | ID=Msa0541200-mRNA-1:cds;Parent=Msa0541200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
