Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514760 | KEH43958.1 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 9.00e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514760 | G8A101 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 4.30e-180 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033420 | Msa0514760 | 0.922108 | 1.508982e-88 | -8.615850e-47 |
| Msa0502160 | Msa0514760 | 0.839624 | 1.417619e-57 | -8.615850e-47 |
| Msa0514760 | Msa0541200 | 0.852229 | 5.295361e-61 | -8.615850e-47 |
| Msa0514760 | Msa0627670 | 0.897802 | 9.877506e-77 | -8.615850e-47 |
| Msa0514760 | Msa0863890 | 0.920245 | 1.632578e-87 | -8.615850e-47 |
| Msa0514760 | Msa0875260 | 0.914527 | 1.727167e-84 | -8.615850e-47 |
| Msa0514760 | Msa0993030 | 0.944043 | 4.018994e-103 | -8.615850e-47 |
| Msa0514760 | Msa1108650 | 0.852312 | 5.015197e-61 | -8.615850e-47 |
| Msa0514760 | Msa1419030 | 0.920150 | 1.842073e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514760 | MtrunA17_Chr1g0206471 | 85.357 | 280 | 35 | 1 | 1 | 280 | 1 | 274 | 0.0 | 506 |
| Msa0514760 | MtrunA17_Chr7g0270401 | 52.364 | 275 | 125 | 1 | 6 | 280 | 5 | 273 | 1.07e-99 | 293 |
| Msa0514760 | MtrunA17_Chr1g0193281 | 46.114 | 193 | 93 | 4 | 9 | 196 | 8 | 194 | 2.50e-52 | 169 |
| Msa0514760 | MtrunA17_Chr7g0228461 | 57.627 | 118 | 49 | 1 | 60 | 176 | 1 | 118 | 1.85e-39 | 135 |
| Msa0514760 | MtrunA17_Chr1g0207921 | 56.250 | 112 | 45 | 1 | 13 | 124 | 9 | 116 | 4.75e-39 | 135 |
| Msa0514760 | MtrunA17_Chr1g0207921 | 40.845 | 71 | 42 | 0 | 208 | 278 | 127 | 197 | 1.78e-11 | 62.0 |
| Msa0514760 | MtrunA17_Chr7g0234161 | 58.333 | 108 | 45 | 0 | 137 | 244 | 16 | 123 | 8.03e-39 | 132 |
| Msa0514760 | MtrunA17_Chr3g0123031 | 55.046 | 109 | 31 | 2 | 172 | 280 | 1 | 91 | 1.55e-31 | 112 |
| Msa0514760 | MtrunA17_Chr6g0473661 | 26.984 | 252 | 160 | 4 | 25 | 275 | 234 | 462 | 6.67e-25 | 103 |
| Msa0514760 | MtrunA17_Chr8g0359311 | 48.193 | 83 | 43 | 0 | 197 | 279 | 17 | 99 | 7.80e-23 | 90.1 |
| Msa0514760 | MtrunA17_Chr8g0361581 | 53.571 | 84 | 33 | 1 | 9 | 92 | 8 | 85 | 1.94e-22 | 91.3 |
| Msa0514760 | MtrunA17_Chr8g0361581 | 37.662 | 77 | 48 | 0 | 202 | 278 | 92 | 168 | 4.11e-12 | 63.2 |
| Msa0514760 | MtrunA17_Chr5g0421721 | 51.899 | 79 | 32 | 1 | 16 | 94 | 15 | 87 | 4.63e-21 | 85.1 |
| Msa0514760 | MtrunA17_Chr5g0423431 | 53.247 | 77 | 30 | 1 | 10 | 86 | 9 | 79 | 2.20e-20 | 83.2 |
| Msa0514760 | MtrunA17_Chr3g0083241 | 63.462 | 52 | 19 | 0 | 1 | 52 | 54 | 105 | 9.05e-15 | 68.9 |
| Msa0514760 | MtrunA17_Chr6g0473651 | 28.767 | 146 | 92 | 2 | 61 | 206 | 228 | 361 | 3.71e-13 | 68.9 |
| Msa0514760 | MtrunA17_Chr6g0473651 | 30.405 | 148 | 84 | 3 | 116 | 256 | 23 | 158 | 8.61e-13 | 67.8 |
| Msa0514760 | MtrunA17_Chr7g0237161 | 38.272 | 81 | 50 | 0 | 180 | 260 | 3 | 83 | 6.32e-13 | 63.2 |
| Msa0514760 | MtrunA17_Chr4g0054601 | 32.099 | 81 | 55 | 0 | 72 | 152 | 2 | 82 | 1.84e-12 | 62.8 |
| Msa0514760 | MtrunA17_Chr1g0151111 | 37.838 | 74 | 46 | 0 | 202 | 275 | 22 | 95 | 4.60e-11 | 60.1 |
| Msa0514760 | MtrunA17_Chr1g0178231 | 36.486 | 74 | 47 | 0 | 202 | 275 | 21 | 94 | 7.80e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTTACAATTGTGTTTA+TGG | 0.148969 | 3_4:-65550461 | Msa0514760:CDS |
| AAAATTCATCGGTGGGTTAA+AGG | 0.246863 | 3_4:+65550378 | None:intergenic |
| TGGAGGTGGTTGGGAGCTTA+TGG | 0.295437 | 3_4:-65549997 | Msa0514760:CDS |
| ATAGATGTGGTGGACGAAAA+TGG | 0.317650 | 3_4:-65550077 | Msa0514760:CDS |
| CCACCTCCAATCTTGAAGTT+TGG | 0.329867 | 3_4:+65550011 | None:intergenic |
| ACAATTGTGTTTATGGGAAA+TGG | 0.340774 | 3_4:-65550454 | Msa0514760:CDS |
| ACTTCAAACTGATTGTGTTT+TGG | 0.342169 | 3_4:+65550568 | None:intergenic |
| GTTAAATTCAGGCCAATTGC+AGG | 0.344120 | 3_4:+65549927 | None:intergenic |
| TTTCAGGAACTTGCTGATAT+TGG | 0.344335 | 3_4:-65550137 | Msa0514760:intron |
| CAAAGTGCAGTTTGGTGCTT+GGG | 0.362374 | 3_4:-65550479 | Msa0514760:CDS |
| CTGTTCCGGTCACCCTTGAT+TGG | 0.370840 | 3_4:-65550339 | Msa0514760:CDS |
| GGTTCATCGCAATGCTGTTC+CGG | 0.371354 | 3_4:-65550353 | Msa0514760:CDS |
| CTCTCTTACAACATGTTGAT+TGG | 0.371414 | 3_4:-65550945 | Msa0514760:intron |
| TCGATTTCGGTCACTGGGTT+GGG | 0.371780 | 3_4:+65550811 | None:intergenic |
| GTTGATCATCATATCGATTT+CGG | 0.376802 | 3_4:+65550798 | None:intergenic |
| GTGATTGGTGCTCCTGCAAT+TGG | 0.381103 | 3_4:-65549939 | Msa0514760:CDS |
| CCCTTGATTGGTTTGTTCCA+AGG | 0.394705 | 3_4:-65550327 | Msa0514760:CDS |
| ACAAAGTGCAGTTTGGTGCT+TGG | 0.396984 | 3_4:-65550480 | Msa0514760:CDS |
| CTTCAAGATTGGAGGTGGTT+GGG | 0.399857 | 3_4:-65550006 | Msa0514760:CDS |
| ATCATATCGATTTCGGTCAC+TGG | 0.403353 | 3_4:+65550805 | None:intergenic |
| CAGGGGATTTATTTAACAAA+GGG | 0.413986 | 3_4:-65550526 | Msa0514760:CDS |
| TGGGTTACAATTGTGTTTAT+GGG | 0.417760 | 3_4:-65550460 | Msa0514760:CDS |
| ATTAGAATCAAGAACAGGTT+TGG | 0.423064 | 3_4:-65550421 | Msa0514760:CDS |
| ATCGATTTCGGTCACTGGGT+TGG | 0.430519 | 3_4:+65550810 | None:intergenic |
| AGCTTATGGTCAAGGCTAGA+AGG | 0.433486 | 3_4:-65549983 | Msa0514760:CDS |
| TCATCGGTGGGTTAAAGGTT+GGG | 0.437933 | 3_4:+65550383 | None:intergenic |
| ACACAATCAGTTTGAAGTGC+TGG | 0.440259 | 3_4:-65550563 | Msa0514760:CDS |
| CCATGTATATCCTATACTTA+AGG | 0.446212 | 3_4:+65550767 | None:intergenic |
| GAGTAGCATATTGTTGGATC+TGG | 0.446877 | 3_4:+65550599 | None:intergenic |
| CCTGCTCCAAACTTCAAGAT+TGG | 0.453032 | 3_4:-65550017 | Msa0514760:CDS |
| TTCATCGGTGGGTTAAAGGT+TGG | 0.459097 | 3_4:+65550382 | None:intergenic |
| GATTTCTACAAAGTGCAGTT+TGG | 0.459805 | 3_4:-65550487 | Msa0514760:CDS |
| TTGGTATTAGAATCAAGAAC+AGG | 0.461579 | 3_4:-65550426 | Msa0514760:CDS |
| AGAGCATCGCCACACCGTTA+TGG | 0.461697 | 3_4:+65550964 | None:intergenic |
| CCACCAGAGTAGCATATTGT+TGG | 0.466976 | 3_4:+65550593 | None:intergenic |
| ACGAGCTACGCCTTAAGTAT+AGG | 0.470202 | 3_4:-65550777 | Msa0514760:CDS |
| GCCTTGGAACAAACCAATCA+AGG | 0.473669 | 3_4:+65550326 | None:intergenic |
| GCTGTTGCTGATGTTGAAAG+TGG | 0.476443 | 3_4:-65550253 | Msa0514760:CDS |
| TTCACCTCGTCATGCATGAA+TGG | 0.476750 | 3_4:+65550304 | None:intergenic |
| TCGTCATGCATGAATGGCCT+TGG | 0.477431 | 3_4:+65550310 | None:intergenic |
| TTTATGGGAAATGGAAGGTT+TGG | 0.478943 | 3_4:-65550445 | Msa0514760:CDS |
| TGGACGAAAATGGCAACATA+TGG | 0.496896 | 3_4:-65550067 | Msa0514760:CDS |
| ACTTCAAGATTGGAGGTGGT+TGG | 0.500102 | 3_4:-65550007 | Msa0514760:CDS |
| CCAGGGGATTTATTTAACAA+AGG | 0.503834 | 3_4:-65550527 | Msa0514760:CDS |
| CCAATCTTGAAGTTTGGAGC+AGG | 0.514742 | 3_4:+65550017 | None:intergenic |
| GCTCCAAACTTCAAGATTGG+AGG | 0.519735 | 3_4:-65550014 | Msa0514760:CDS |
| GAGGGTGCACGTGTGGTGAT+TGG | 0.520385 | 3_4:-65549954 | Msa0514760:CDS |
| AGTTTGAAGTGCTGGTTGAA+AGG | 0.537719 | 3_4:-65550555 | Msa0514760:CDS |
| CCTTTGTTAAATAAATCCCC+TGG | 0.540457 | 3_4:+65550527 | None:intergenic |
| CCAAACTTCAAGATTGGAGG+TGG | 0.541019 | 3_4:-65550011 | Msa0514760:CDS |
| GGATTTATTTAACAAAGGGC+TGG | 0.544917 | 3_4:-65550522 | Msa0514760:CDS |
| AGAAGTAGAGGGTTAAATTC+AGG | 0.545060 | 3_4:+65549916 | None:intergenic |
| GATCCAACAATATGCTACTC+TGG | 0.547737 | 3_4:-65550596 | Msa0514760:CDS |
| TGCATGGCTTTCCACCATAA+CGG | 0.553023 | 3_4:-65550978 | Msa0514760:CDS |
| TCATATCGATTTCGGTCACT+GGG | 0.559152 | 3_4:+65550806 | None:intergenic |
| TTGTGTTTATGGGAAATGGA+AGG | 0.564520 | 3_4:-65550450 | Msa0514760:CDS |
| ACAAACCAATCAAGGGTGAC+CGG | 0.568513 | 3_4:+65550334 | None:intergenic |
| GTCACTGGGTTGGGATCAAG+CGG | 0.568704 | 3_4:+65550820 | None:intergenic |
| GGATCTGGTCTCCAAAATCA+CGG | 0.574662 | 3_4:+65550614 | None:intergenic |
| AACTTCGATAATAGATGTGG+TGG | 0.581319 | 3_4:-65550087 | Msa0514760:CDS |
| CCTTAAGTATAGGATATACA+TGG | 0.581696 | 3_4:-65550767 | Msa0514760:CDS |
| CGATGAACCCTAAAATTCAT+CGG | 0.585773 | 3_4:+65550367 | None:intergenic |
| GATCTGGTCTCCAAAATCAC+GGG | 0.590274 | 3_4:+65550615 | None:intergenic |
| GTTCACAGAGGGTGCACGTG+TGG | 0.592341 | 3_4:-65549961 | Msa0514760:CDS |
| TGGTTGGGAGCTTATGGTCA+AGG | 0.599583 | 3_4:-65549991 | Msa0514760:CDS |
| GAACCCTAAAATTCATCGGT+GGG | 0.600776 | 3_4:+65550371 | None:intergenic |
| GACGAATCACACAGAAGTAG+AGG | 0.600845 | 3_4:+65549904 | None:intergenic |
| ACTGCACTTTGTAGAAATCA+CGG | 0.602302 | 3_4:+65550491 | None:intergenic |
| GCTGGTTGAAAGGAATAACC+AGG | 0.605399 | 3_4:-65550545 | Msa0514760:CDS |
| GCATCGCCACACCGTTATGG+TGG | 0.605462 | 3_4:+65550967 | None:intergenic |
| AAATCACGGGAAAACATCAT+CGG | 0.616708 | 3_4:+65550628 | None:intergenic |
| CCAACAATATGCTACTCTGG+TGG | 0.620541 | 3_4:-65550593 | Msa0514760:CDS |
| CCTTGGAACAAACCAATCAA+GGG | 0.627308 | 3_4:+65550327 | None:intergenic |
| TGAACCCTAAAATTCATCGG+TGG | 0.633118 | 3_4:+65550370 | None:intergenic |
| AGAAACTTCGATAATAGATG+TGG | 0.635713 | 3_4:-65550090 | Msa0514760:CDS |
| GTTGACGTTGAATATGTGTG+TGG | 0.666000 | 3_4:-65550739 | Msa0514760:CDS |
| ACGAATCACACAGAAGTAGA+GGG | 0.671018 | 3_4:+65549905 | None:intergenic |
| GGCTTTCCACCATAACGGTG+TGG | 0.672076 | 3_4:-65550973 | Msa0514760:CDS |
| CTGGTTGAAAGGAATAACCA+GGG | 0.673257 | 3_4:-65550544 | Msa0514760:CDS |
| AAGGCTAGAAGGTTCACAGA+GGG | 0.686944 | 3_4:-65549972 | Msa0514760:CDS |
| AAGGCCATTCATGCATGACG+AGG | 0.690981 | 3_4:-65550308 | Msa0514760:CDS |
| TGGTTGAAAGGAATAACCAG+GGG | 0.751338 | 3_4:-65550543 | Msa0514760:CDS |
| CAAGGCTAGAAGGTTCACAG+AGG | 0.784898 | 3_4:-65549973 | Msa0514760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr3_4:65550184-65550203 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr3_4:65550721-65550740 | Msa0514760:intron | 15.0% |
| !!! | TTTTAAAAAAGAATAACAGA+TGG | + | chr3_4:65550184-65550203 | None:intergenic | 15.0% |
| !!! | ACATTTTTTTATGTTTTTTC+AGG | - | chr3_4:65550721-65550740 | Msa0514760:intron | 15.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr3_4:65549993-65550012 | None:intergenic | 20.0% |
| !! | AAAAATAAGGAAACTGTATA+GGG | + | chr3_4:65549993-65550012 | None:intergenic | 20.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr3_4:65549994-65550013 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr3_4:65549994-65550013 | Msa0514760:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr3_4:65550180-65550199 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr3_4:65550207-65550226 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr3_4:65550208-65550227 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr3_4:65550209-65550228 | Msa0514760:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr3_4:65550210-65550229 | Msa0514760:intron | 25.0% |
| ! | CAAAAATAAGGAAACTGTAT+AGG | + | chr3_4:65549994-65550013 | None:intergenic | 25.0% |
| !!! | ATACAGTTTCCTTATTTTTG+CGG | - | chr3_4:65549994-65550013 | Msa0514760:CDS | 25.0% |
| ! | AAAAAAGAATAACAGATGGA+AGG | + | chr3_4:65550180-65550199 | None:intergenic | 25.0% |
| ! | TGAAACAAATAACATTGTCA+GGG | + | chr3_4:65550207-65550226 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAACATTGTC+AGG | + | chr3_4:65550208-65550227 | None:intergenic | 25.0% |
| !! | ACAATGTTATTTGTTTCAAC+AGG | - | chr3_4:65550209-65550228 | Msa0514760:intron | 25.0% |
| !! | CAATGTTATTTGTTTCAACA+GGG | - | chr3_4:65550210-65550229 | Msa0514760:intron | 25.0% |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr3_4:65550006-65550025 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr3_4:65550079-65550098 | None:intergenic | 30.0% |
| CCATGTATATCCTATACTTA+AGG | + | chr3_4:65550110-65550129 | None:intergenic | 30.0% | |
| CCTTAAGTATAGGATATACA+TGG | - | chr3_4:65550107-65550126 | Msa0514760:CDS | 30.0% | |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr3_4:65550309-65550328 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr3_4:65550348-65550367 | Msa0514760:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr3_4:65550413-65550432 | Msa0514760:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr3_4:65550414-65550433 | Msa0514760:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr3_4:65550420-65550439 | Msa0514760:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr3_4:65550448-65550467 | Msa0514760:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr3_4:65550453-65550472 | Msa0514760:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr3_4:65550629-65550648 | Msa0514760:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr3_4:65550693-65550712 | Msa0514760:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr3_4:65550751-65550770 | Msa0514760:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr3_4:65550784-65550803 | Msa0514760:CDS | 30.0% | |
| ATCTTCAAACCGCAAAAATA+AGG | + | chr3_4:65550006-65550025 | None:intergenic | 30.0% | |
| !! | GTTGATCATCATATCGATTT+CGG | + | chr3_4:65550079-65550098 | None:intergenic | 30.0% |
| CCATGTATATCCTATACTTA+AGG | + | chr3_4:65550110-65550129 | None:intergenic | 30.0% | |
| CCTTAAGTATAGGATATACA+TGG | - | chr3_4:65550107-65550126 | Msa0514760:CDS | 30.0% | |
| ! | ACTTCAAACTGATTGTGTTT+TGG | + | chr3_4:65550309-65550328 | None:intergenic | 30.0% |
| CAGGGGATTTATTTAACAAA+GGG | - | chr3_4:65550348-65550367 | Msa0514760:CDS | 30.0% | |
| TTGGGTTACAATTGTGTTTA+TGG | - | chr3_4:65550413-65550432 | Msa0514760:CDS | 30.0% | |
| TGGGTTACAATTGTGTTTAT+GGG | - | chr3_4:65550414-65550433 | Msa0514760:CDS | 30.0% | |
| ACAATTGTGTTTATGGGAAA+TGG | - | chr3_4:65550420-65550439 | Msa0514760:CDS | 30.0% | |
| TTGGTATTAGAATCAAGAAC+AGG | - | chr3_4:65550448-65550467 | Msa0514760:CDS | 30.0% | |
| ATTAGAATCAAGAACAGGTT+TGG | - | chr3_4:65550453-65550472 | Msa0514760:CDS | 30.0% | |
| !! | TGATGTTGAAAGTGGATTTT+TGG | - | chr3_4:65550629-65550648 | Msa0514760:CDS | 30.0% |
| ! | TGTTGTGTGTTTTGTGAATA+AGG | - | chr3_4:65550693-65550712 | Msa0514760:intron | 30.0% |
| !!! | TGATATTGGTTTTGCTCAAA+TGG | - | chr3_4:65550751-65550770 | Msa0514760:CDS | 30.0% |
| AGAAACTTCGATAATAGATG+TGG | - | chr3_4:65550784-65550803 | Msa0514760:CDS | 30.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr3_4:65549929-65549948 | Msa0514760:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr3_4:65550146-65550165 | Msa0514760:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr3_4:65550249-65550268 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | - | chr3_4:65550249-65550268 | Msa0514760:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr3_4:65550350-65550369 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr3_4:65550347-65550366 | Msa0514760:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr3_4:65550352-65550371 | Msa0514760:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr3_4:65550386-65550405 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr3_4:65550387-65550406 | Msa0514760:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr3_4:65550424-65550443 | Msa0514760:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr3_4:65550429-65550448 | Msa0514760:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr3_4:65550499-65550518 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr3_4:65550499-65550518 | Msa0514760:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr3_4:65550500-65550519 | Msa0514760:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr3_4:65550510-65550529 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | - | chr3_4:65550737-65550756 | Msa0514760:CDS | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | - | chr3_4:65550787-65550806 | Msa0514760:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr3_4:65550840-65550859 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr3_4:65550961-65550980 | None:intergenic | 35.0% | |
| CTCTCTTACAACATGTTGAT+TGG | - | chr3_4:65549929-65549948 | Msa0514760:CDS | 35.0% | |
| !!! | ATATGTGTGTGGTTTTGTTG+TGG | - | chr3_4:65550146-65550165 | Msa0514760:intron | 35.0% |
| AAATCACGGGAAAACATCAT+CGG | + | chr3_4:65550249-65550268 | None:intergenic | 35.0% | |
| ! | ATGATGTTTTCCCGTGATTT+TGG | - | chr3_4:65550249-65550268 | Msa0514760:CDS | 35.0% |
| CCTTTGTTAAATAAATCCCC+TGG | + | chr3_4:65550350-65550369 | None:intergenic | 35.0% | |
| CCAGGGGATTTATTTAACAA+AGG | - | chr3_4:65550347-65550366 | Msa0514760:CDS | 35.0% | |
| GGATTTATTTAACAAAGGGC+TGG | - | chr3_4:65550352-65550371 | Msa0514760:CDS | 35.0% | |
| ACTGCACTTTGTAGAAATCA+CGG | + | chr3_4:65550386-65550405 | None:intergenic | 35.0% | |
| GATTTCTACAAAGTGCAGTT+TGG | - | chr3_4:65550387-65550406 | Msa0514760:CDS | 35.0% | |
| TTGTGTTTATGGGAAATGGA+AGG | - | chr3_4:65550424-65550443 | Msa0514760:CDS | 35.0% | |
| TTTATGGGAAATGGAAGGTT+TGG | - | chr3_4:65550429-65550448 | Msa0514760:CDS | 35.0% | |
| !! | AAAATTCATCGGTGGGTTAA+AGG | + | chr3_4:65550499-65550518 | None:intergenic | 35.0% |
| ! | TTAACCCACCGATGAATTTT+AGG | - | chr3_4:65550499-65550518 | Msa0514760:CDS | 35.0% |
| ! | TAACCCACCGATGAATTTTA+GGG | - | chr3_4:65550500-65550519 | Msa0514760:CDS | 35.0% |
| CGATGAACCCTAAAATTCAT+CGG | + | chr3_4:65550510-65550529 | None:intergenic | 35.0% | |
| !! | TTTCAGGAACTTGCTGATAT+TGG | - | chr3_4:65550737-65550756 | Msa0514760:CDS | 35.0% |
| AACTTCGATAATAGATGTGG+TGG | - | chr3_4:65550787-65550806 | Msa0514760:CDS | 35.0% | |
| AGGATCCATCGAAAAACTAA+GGG | + | chr3_4:65550840-65550859 | None:intergenic | 35.0% | |
| AGAAGTAGAGGGTTAAATTC+AGG | + | chr3_4:65550961-65550980 | None:intergenic | 35.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr3_4:65550012-65550031 | Msa0514760:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr3_4:65550071-65550090 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr3_4:65550072-65550091 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr3_4:65550135-65550154 | Msa0514760:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr3_4:65550278-65550297 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr3_4:65550278-65550297 | Msa0514760:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr3_4:65550311-65550330 | Msa0514760:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr3_4:65550319-65550338 | Msa0514760:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr3_4:65550330-65550349 | Msa0514760:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr3_4:65550331-65550350 | Msa0514760:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr3_4:65550506-65550525 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr3_4:65550507-65550526 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | + | chr3_4:65550550-65550569 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr3_4:65550757-65550776 | Msa0514760:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr3_4:65550797-65550816 | Msa0514760:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr3_4:65550807-65550826 | Msa0514760:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr3_4:65550841-65550860 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr3_4:65550950-65550969 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr3_4:65550972-65550991 | None:intergenic | 40.0% | |
| TGCGGTTTGAAGATGATGTT+TGG | - | chr3_4:65550012-65550031 | Msa0514760:CDS | 40.0% | |
| !! | TCATATCGATTTCGGTCACT+GGG | + | chr3_4:65550071-65550090 | None:intergenic | 40.0% |
| !! | ATCATATCGATTTCGGTCAC+TGG | + | chr3_4:65550072-65550091 | None:intergenic | 40.0% |
| GTTGACGTTGAATATGTGTG+TGG | - | chr3_4:65550135-65550154 | Msa0514760:intron | 40.0% | |
| GAGTAGCATATTGTTGGATC+TGG | + | chr3_4:65550278-65550297 | None:intergenic | 40.0% | |
| GATCCAACAATATGCTACTC+TGG | - | chr3_4:65550278-65550297 | Msa0514760:CDS | 40.0% | |
| ! | ACACAATCAGTTTGAAGTGC+TGG | - | chr3_4:65550311-65550330 | Msa0514760:CDS | 40.0% |
| !! | AGTTTGAAGTGCTGGTTGAA+AGG | - | chr3_4:65550319-65550338 | Msa0514760:CDS | 40.0% |
| CTGGTTGAAAGGAATAACCA+GGG | - | chr3_4:65550330-65550349 | Msa0514760:CDS | 40.0% | |
| TGGTTGAAAGGAATAACCAG+GGG | - | chr3_4:65550331-65550350 | Msa0514760:CDS | 40.0% | |
| GAACCCTAAAATTCATCGGT+GGG | + | chr3_4:65550506-65550525 | None:intergenic | 40.0% | |
| TGAACCCTAAAATTCATCGG+TGG | + | chr3_4:65550507-65550526 | None:intergenic | 40.0% | |
| CCTTGGAACAAACCAATCAA+GGG | + | chr3_4:65550550-65550569 | None:intergenic | 40.0% | |
| !! | TGGTTTTGCTCAAATGGCTT+TGG | - | chr3_4:65550757-65550776 | Msa0514760:CDS | 40.0% |
| !! | ATAGATGTGGTGGACGAAAA+TGG | - | chr3_4:65550797-65550816 | Msa0514760:CDS | 40.0% |
| TGGACGAAAATGGCAACATA+TGG | - | chr3_4:65550807-65550826 | Msa0514760:CDS | 40.0% | |
| CAGGATCCATCGAAAAACTA+AGG | + | chr3_4:65550841-65550860 | None:intergenic | 40.0% | |
| GTTAAATTCAGGCCAATTGC+AGG | + | chr3_4:65550950-65550969 | None:intergenic | 40.0% | |
| ACGAATCACACAGAAGTAGA+GGG | + | chr3_4:65550972-65550991 | None:intergenic | 40.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr3_4:65550097-65550116 | Msa0514760:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | + | chr3_4:65550262-65550281 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | + | chr3_4:65550263-65550282 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr3_4:65550284-65550303 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr3_4:65550281-65550300 | Msa0514760:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr3_4:65550329-65550348 | Msa0514760:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr3_4:65550394-65550413 | Msa0514760:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr3_4:65550395-65550414 | Msa0514760:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr3_4:65550494-65550513 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr3_4:65550495-65550514 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr3_4:65550543-65550562 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | - | chr3_4:65550547-65550566 | Msa0514760:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | + | chr3_4:65550551-65550570 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr3_4:65550573-65550592 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr3_4:65550621-65550640 | Msa0514760:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr3_4:65550832-65550851 | Msa0514760:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr3_4:65550860-65550879 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr3_4:65550857-65550876 | Msa0514760:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr3_4:65550860-65550879 | Msa0514760:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr3_4:65550866-65550885 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr3_4:65550863-65550882 | Msa0514760:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr3_4:65550867-65550886 | Msa0514760:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr3_4:65550868-65550887 | Msa0514760:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr3_4:65550891-65550910 | Msa0514760:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr3_4:65550902-65550921 | Msa0514760:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr3_4:65550973-65550992 | None:intergenic | 45.0% | |
| ACGAGCTACGCCTTAAGTAT+AGG | - | chr3_4:65550097-65550116 | Msa0514760:CDS | 45.0% | |
| GATCTGGTCTCCAAAATCAC+GGG | + | chr3_4:65550262-65550281 | None:intergenic | 45.0% | |
| GGATCTGGTCTCCAAAATCA+CGG | + | chr3_4:65550263-65550282 | None:intergenic | 45.0% | |
| CCACCAGAGTAGCATATTGT+TGG | + | chr3_4:65550284-65550303 | None:intergenic | 45.0% | |
| CCAACAATATGCTACTCTGG+TGG | - | chr3_4:65550281-65550300 | Msa0514760:CDS | 45.0% | |
| GCTGGTTGAAAGGAATAACC+AGG | - | chr3_4:65550329-65550348 | Msa0514760:CDS | 45.0% | |
| !! | ACAAAGTGCAGTTTGGTGCT+TGG | - | chr3_4:65550394-65550413 | Msa0514760:CDS | 45.0% |
| !! | CAAAGTGCAGTTTGGTGCTT+GGG | - | chr3_4:65550395-65550414 | Msa0514760:CDS | 45.0% |
| !! | TCATCGGTGGGTTAAAGGTT+GGG | + | chr3_4:65550494-65550513 | None:intergenic | 45.0% |
| !! | TTCATCGGTGGGTTAAAGGT+TGG | + | chr3_4:65550495-65550514 | None:intergenic | 45.0% |
| ACAAACCAATCAAGGGTGAC+CGG | + | chr3_4:65550543-65550562 | None:intergenic | 45.0% | |
| !! | CCCTTGATTGGTTTGTTCCA+AGG | - | chr3_4:65550547-65550566 | Msa0514760:CDS | 45.0% |
| GCCTTGGAACAAACCAATCA+AGG | + | chr3_4:65550551-65550570 | None:intergenic | 45.0% | |
| TTCACCTCGTCATGCATGAA+TGG | + | chr3_4:65550573-65550592 | None:intergenic | 45.0% | |
| GCTGTTGCTGATGTTGAAAG+TGG | - | chr3_4:65550621-65550640 | Msa0514760:CDS | 45.0% | |
| !! | CTGCACCCTTAGTTTTTCGA+TGG | - | chr3_4:65550832-65550851 | Msa0514760:intron | 45.0% |
| ! | CCAATCTTGAAGTTTGGAGC+AGG | + | chr3_4:65550860-65550879 | None:intergenic | 45.0% |
| CCTGCTCCAAACTTCAAGAT+TGG | - | chr3_4:65550857-65550876 | Msa0514760:intron | 45.0% | |
| GCTCCAAACTTCAAGATTGG+AGG | - | chr3_4:65550860-65550879 | Msa0514760:intron | 45.0% | |
| CCACCTCCAATCTTGAAGTT+TGG | + | chr3_4:65550866-65550885 | None:intergenic | 45.0% | |
| CCAAACTTCAAGATTGGAGG+TGG | - | chr3_4:65550863-65550882 | Msa0514760:intron | 45.0% | |
| ACTTCAAGATTGGAGGTGGT+TGG | - | chr3_4:65550867-65550886 | Msa0514760:intron | 45.0% | |
| CTTCAAGATTGGAGGTGGTT+GGG | - | chr3_4:65550868-65550887 | Msa0514760:intron | 45.0% | |
| AGCTTATGGTCAAGGCTAGA+AGG | - | chr3_4:65550891-65550910 | Msa0514760:intron | 45.0% | |
| AAGGCTAGAAGGTTCACAGA+GGG | - | chr3_4:65550902-65550921 | Msa0514760:intron | 45.0% | |
| GACGAATCACACAGAAGTAG+AGG | + | chr3_4:65550973-65550992 | None:intergenic | 45.0% | |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr3_4:65550066-65550085 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr3_4:65550067-65550086 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | - | chr3_4:65550521-65550540 | Msa0514760:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | + | chr3_4:65550567-65550586 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr3_4:65550566-65550585 | Msa0514760:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr3_4:65550883-65550902 | Msa0514760:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr3_4:65550901-65550920 | Msa0514760:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr3_4:65550935-65550954 | Msa0514760:intron | 50.0% |
| TCGATTTCGGTCACTGGGTT+GGG | + | chr3_4:65550066-65550085 | None:intergenic | 50.0% | |
| ! | ATCGATTTCGGTCACTGGGT+TGG | + | chr3_4:65550067-65550086 | None:intergenic | 50.0% |
| GGTTCATCGCAATGCTGTTC+CGG | - | chr3_4:65550521-65550540 | Msa0514760:CDS | 50.0% | |
| TCGTCATGCATGAATGGCCT+TGG | + | chr3_4:65550567-65550586 | None:intergenic | 50.0% | |
| AAGGCCATTCATGCATGACG+AGG | - | chr3_4:65550566-65550585 | Msa0514760:CDS | 50.0% | |
| TGGTTGGGAGCTTATGGTCA+AGG | - | chr3_4:65550883-65550902 | Msa0514760:intron | 50.0% | |
| CAAGGCTAGAAGGTTCACAG+AGG | - | chr3_4:65550901-65550920 | Msa0514760:intron | 50.0% | |
| ! | GTGATTGGTGCTCCTGCAAT+TGG | - | chr3_4:65550935-65550954 | Msa0514760:intron | 50.0% |
| GGCTTTCCACCATAACGGTG+TGG | - | chr3_4:65549901-65549920 | Msa0514760:CDS | 55.0% | |
| !! | AGAGCATCGCCACACCGTTA+TGG | + | chr3_4:65549913-65549932 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr3_4:65550057-65550076 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | - | chr3_4:65550535-65550554 | Msa0514760:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr3_4:65550877-65550896 | Msa0514760:intron | 55.0% | |
| GGCTTTCCACCATAACGGTG+TGG | - | chr3_4:65549901-65549920 | Msa0514760:CDS | 55.0% | |
| !! | AGAGCATCGCCACACCGTTA+TGG | + | chr3_4:65549913-65549932 | None:intergenic | 55.0% |
| ! | GTCACTGGGTTGGGATCAAG+CGG | + | chr3_4:65550057-65550076 | None:intergenic | 55.0% |
| CTGTTCCGGTCACCCTTGAT+TGG | - | chr3_4:65550535-65550554 | Msa0514760:CDS | 55.0% | |
| TGGAGGTGGTTGGGAGCTTA+TGG | - | chr3_4:65550877-65550896 | Msa0514760:intron | 55.0% | |
| GCATCGCCACACCGTTATGG+TGG | + | chr3_4:65549910-65549929 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr3_4:65550913-65550932 | Msa0514760:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr3_4:65550920-65550939 | Msa0514760:intron | 60.0% |
| GCATCGCCACACCGTTATGG+TGG | + | chr3_4:65549910-65549929 | None:intergenic | 60.0% | |
| ! | GTTCACAGAGGGTGCACGTG+TGG | - | chr3_4:65550913-65550932 | Msa0514760:intron | 60.0% |
| ! | GAGGGTGCACGTGTGGTGAT+TGG | - | chr3_4:65550920-65550939 | Msa0514760:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65549899 | 65550997 | 65549899 | ID=Msa0514760;Name=Msa0514760 |
| chr3_4 | mRNA | 65549899 | 65550997 | 65549899 | ID=Msa0514760-mRNA-1;Parent=Msa0514760;Name=Msa0514760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.5|1|1|4|0|280 |
| chr3_4 | exon | 65550946 | 65550997 | 65550946 | ID=Msa0514760-mRNA-1:exon:16763;Parent=Msa0514760-mRNA-1 |
| chr3_4 | exon | 65550729 | 65550844 | 65550729 | ID=Msa0514760-mRNA-1:exon:16762;Parent=Msa0514760-mRNA-1 |
| chr3_4 | exon | 65550246 | 65550665 | 65550246 | ID=Msa0514760-mRNA-1:exon:16761;Parent=Msa0514760-mRNA-1 |
| chr3_4 | exon | 65549899 | 65550153 | 65549899 | ID=Msa0514760-mRNA-1:exon:16760;Parent=Msa0514760-mRNA-1 |
| chr3_4 | CDS | 65550946 | 65550997 | 65550946 | ID=Msa0514760-mRNA-1:cds;Parent=Msa0514760-mRNA-1 |
| chr3_4 | CDS | 65550729 | 65550844 | 65550729 | ID=Msa0514760-mRNA-1:cds;Parent=Msa0514760-mRNA-1 |
| chr3_4 | CDS | 65550246 | 65550665 | 65550246 | ID=Msa0514760-mRNA-1:cds;Parent=Msa0514760-mRNA-1 |
| chr3_4 | CDS | 65549899 | 65550153 | 65549899 | ID=Msa0514760-mRNA-1:cds;Parent=Msa0514760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
