AlfalfaGEDB | Msa0502270

M. sativa cultivar zhongmu-4 / Msa0502270

KEGG: K04681
GO: GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502270	PNY08177.1	70.492	122	20	1	46	151	29	150	8.02e-45	169

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502270	sp\|Q9SLZ4\|RBR1_PEA	69.355	124	20	2	46	151	27	150	6.25e-47	166

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502270	A0A2K3NYS1	70.492	122	20	1	46	151	29	150	3.83e-45	169

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142220	Msa0502270	0.832478	9.239648e-56	-8.615850e-47
Msa0188460	Msa0502270	0.806859	6.704481e-50	-8.615850e-47
Msa0208090	Msa0502270	0.801747	7.782776e-49	-8.615850e-47
Msa0218240	Msa0502270	0.801353	9.372524e-49	-8.615850e-47
Msa0231000	Msa0502270	0.810351	1.203524e-50	-8.615850e-47
Msa0233300	Msa0502270	0.822307	2.540192e-53	-8.615850e-47
Msa0270520	Msa0502270	0.825235	5.234743e-54	-8.615850e-47
Msa0285450	Msa0502270	0.802072	6.673551e-49	-8.615850e-47
Msa0288100	Msa0502270	0.810266	1.255265e-50	-8.615850e-47
Msa0326200	Msa0502270	0.804954	1.685858e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502270	MtrunA17_Chr8g0353751	77.966	118	10	1	50	151	31	148	2.37e-44	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502270	AT3G12280.2	47.368	114	44	2	54	151	31	144	4.58e-26	103
Msa0502270	AT3G12280.1	47.368	114	44	2	54	151	31	144	4.58e-26	103

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Find 45 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGTGAAATGGCGGAGA+AGG	0.487778	3_4:-44344712	None:intergenic
AAAGAAGCAATGGATCTGTT+TGG	0.423829	3_4:+44345362	Msa0502270:CDS
AAAGATGAGATTGAGAATAC+TGG	0.403583	3_4:+44345602	Msa0502270:CDS
AACCGTGAAATGGCGGAGAA+GGG	0.554676	3_4:-44344711	None:intergenic
AATGTTTCATCAATGGGAAA+TGG	0.408483	3_4:+44345410	Msa0502270:CDS
ACGAATAAACCGTGAAATGG+CGG	0.549973	3_4:-44344718	None:intergenic
ACTTCCTCAGTTTGTTGTCA+AGG	0.489779	3_4:+44345765	Msa0502270:CDS
AGAAACCAAACATCTTCTCA+TGG	0.615290	3_4:+44345385	Msa0502270:CDS
AGAACGAATAAACCGTGAAA+TGG	0.530830	3_4:-44344721	None:intergenic
AGAGAGAAAGTTGAATGAAT+TGG	0.333762	3_4:-44344532	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGAAAGTTGAATGAAT+TGG	-	chr3_4:44344535-44344554	None:intergenic	30.0%
CAAATATGTCAAACATGAGA+CGG	-	chr3_4:44344749-44344768	None:intergenic	30.0%
ATTGAACATCTCCTATATTG+GGG	-	chr3_4:44344820-44344839	None:intergenic	30.0%
GAAAATTAGAGTTTGGTTAG+TGG	+	chr3_4:44344933-44344952	Msa0502270:intron	30.0%
ATGGCAAATGTTTCATCAAT+GGG	+	chr3_4:44345404-44345423	Msa0502270:CDS	30.0%
AATGTTTCATCAATGGGAAA+TGG	+	chr3_4:44345410-44345429	Msa0502270:CDS	30.0%
AAAGATGAGATTGAGAATAC+TGG	+	chr3_4:44345602-44345621	Msa0502270:CDS	30.0%
CACAAGCAAACATAAAAGAT+TGG	-	chr3_4:44345917-44345936	None:intergenic	30.0%
AGAGAGAAAGTTGAATGAAT+TGG	-	chr3_4:44344535-44344554	None:intergenic	30.0%
CAAATATGTCAAACATGAGA+CGG	-	chr3_4:44344749-44344768	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	44344530	44346048	44344530	ID=Msa0502270;Name=Msa0502270
chr3_4	mRNA	44344530	44346048	44344530	ID=Msa0502270-mRNA-1;Parent=Msa0502270;Name=Msa0502270-mRNA-1;_AED=0.40;_eAED=0.40;_QI=195\|0.5\|0.42\|0.85\|0.83\|0.71\|7\|0\|170
chr3_4	exon	44344530	44344558	44344530	ID=Msa0502270-mRNA-1:exon:9469;Parent=Msa0502270-mRNA-1
chr3_4	exon	44344587	44344784	44344587	ID=Msa0502270-mRNA-1:exon:9470;Parent=Msa0502270-mRNA-1
chr3_4	exon	44345111	44345228	44345111	ID=Msa0502270-mRNA-1:exon:9471;Parent=Msa0502270-mRNA-1
chr3_4	exon	44345329	44345436	44345329	ID=Msa0502270-mRNA-1:exon:9472;Parent=Msa0502270-mRNA-1
chr3_4	exon	44345521	44345623	44345521	ID=Msa0502270-mRNA-1:exon:9473;Parent=Msa0502270-mRNA-1
chr3_4	exon	44345752	44345840	44345752	ID=Msa0502270-mRNA-1:exon:9474;Parent=Msa0502270-mRNA-1
chr3_4	exon	44345986	44346048	44345986	ID=Msa0502270-mRNA-1:exon:9475;Parent=Msa0502270-mRNA-1
chr3_4	five_prime_UTR	44344530	44344558	44344530	ID=Msa0502270-mRNA-1:five_prime_utr;Parent=Msa0502270-mRNA-1
chr3_4	five_prime_UTR	44344587	44344752	44344587	ID=Msa0502270-mRNA-1:five_prime_utr;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44344753	44344784	44344753	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44345111	44345228	44345111	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44345329	44345436	44345329	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44345521	44345623	44345521	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44345752	44345840	44345752	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1
chr3_4	CDS	44345986	44346048	44345986	ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1

Gene Sequence

>Msa0502270

ATGTTTGACATATTTGTTCTGTGCAATCTCAGTGGCAGGTTTTTGGTGTTTTGGTGGCAGCTTAGCAGTTTTAAGTTTTCTGCTGTTATAGCTCTCGACTGGCTTTTGATGCTTCTGCTGTTTGGCCTTTTGGTGTTTCAGTTTTGTGCTCAGAATGAGCTAGCATTGGATGAGAAAACCTGTAAAGAAGCAATGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCATCAATGGGAAATGGAACGACAGAAGAAGCAGAGCGGTGCTGGTTTGCTTTTATTTTATGCTCTATCAAGAGGCTGACTCAGAAAAATGAGGAGAGTGAAAAAGATGAGATTGAGAATACTGATTTTTTCAAAGAACTTCCTCAGTTTGTTGTCAAGGCTGATCCAATTTTAAGCAATCGATTTAGCTCTGATTGGGAAAACAAGCTTGAGAGTAACGTCAATAAGATTTTGAGCAGAGTAACATCAATAACAATATTACCACTAGAGCTTTGA

Protein sequence

>Msa0502270

MFDIFVLCNLSGRFLVFWWQLSSFKFSAVIALDWLLMLLLFGLLVFQFCAQNELALDEKTCKEAMDLFGETKHLLMANVSSMGNGTTEEAERCWFAFILCSIKRLTQKNEESEKDEIENTDFFKELPQFVVKADPILSNRFSSDWENKLESNVNKILSRVTSITILPLEL*