Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502270 | PNY08177.1 | 70.492 | 122 | 20 | 1 | 46 | 151 | 29 | 150 | 8.02e-45 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502270 | sp|Q9SLZ4|RBR1_PEA | 69.355 | 124 | 20 | 2 | 46 | 151 | 27 | 150 | 6.25e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502270 | A0A2K3NYS1 | 70.492 | 122 | 20 | 1 | 46 | 151 | 29 | 150 | 3.83e-45 | 169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142220 | Msa0502270 | 0.832478 | 9.239648e-56 | -8.615850e-47 |
| Msa0188460 | Msa0502270 | 0.806859 | 6.704481e-50 | -8.615850e-47 |
| Msa0208090 | Msa0502270 | 0.801747 | 7.782776e-49 | -8.615850e-47 |
| Msa0218240 | Msa0502270 | 0.801353 | 9.372524e-49 | -8.615850e-47 |
| Msa0231000 | Msa0502270 | 0.810351 | 1.203524e-50 | -8.615850e-47 |
| Msa0233300 | Msa0502270 | 0.822307 | 2.540192e-53 | -8.615850e-47 |
| Msa0375630 | Msa0502270 | 0.801598 | 8.349822e-49 | -8.615850e-47 |
| Msa0384800 | Msa0502270 | 0.811216 | 7.820626e-51 | -8.615850e-47 |
| Msa0402290 | Msa0502270 | 0.804856 | 1.767279e-49 | -8.615850e-47 |
| Msa0406120 | Msa0502270 | 0.808159 | 3.551416e-50 | -8.615850e-47 |
| Msa0435230 | Msa0502270 | 0.815858 | 7.452040e-52 | -8.615850e-47 |
| Msa0436800 | Msa0502270 | 0.809420 | 1.909146e-50 | -8.615850e-47 |
| Msa0452620 | Msa0502270 | 0.805650 | 1.205089e-49 | -8.615850e-47 |
| Msa0456200 | Msa0502270 | 0.801021 | 1.095738e-48 | -8.615850e-47 |
| Msa0479340 | Msa0502270 | 0.819096 | 1.389259e-52 | -8.615850e-47 |
| Msa0270520 | Msa0502270 | 0.825235 | 5.234743e-54 | -8.615850e-47 |
| Msa0285450 | Msa0502270 | 0.802072 | 6.673551e-49 | -8.615850e-47 |
| Msa0288100 | Msa0502270 | 0.810266 | 1.255265e-50 | -8.615850e-47 |
| Msa0326200 | Msa0502270 | 0.804954 | 1.685858e-49 | -8.615850e-47 |
| Msa0353190 | Msa0502270 | 0.801954 | 7.055194e-49 | -8.615850e-47 |
| Msa0363300 | Msa0502270 | 0.804808 | 1.808564e-49 | -8.615850e-47 |
| Msa0484780 | Msa0502270 | 0.812030 | 5.204974e-51 | -8.615850e-47 |
| Msa0502270 | Msa0589780 | 0.800061 | 1.719719e-48 | -8.615850e-47 |
| Msa0502270 | Msa0598780 | 0.804046 | 2.606652e-49 | -8.615850e-47 |
| Msa0502270 | Msa0657970 | 0.810958 | 8.897130e-51 | -8.615850e-47 |
| Msa0502270 | Msa0661870 | 0.808684 | 2.743797e-50 | -8.615850e-47 |
| Msa0502270 | Msa0694370 | 0.809179 | 2.150038e-50 | -8.615850e-47 |
| Msa0502270 | Msa0697060 | 0.844137 | 9.107241e-59 | -8.615850e-47 |
| Msa0502270 | Msa0726140 | 0.828272 | 9.856624e-55 | -8.615850e-47 |
| Msa0502270 | Msa0736000 | 0.817091 | 3.946801e-52 | -8.615850e-47 |
| Msa0502270 | Msa0736060 | 0.802140 | 6.462536e-49 | -8.615850e-47 |
| Msa0502270 | Msa0736200 | 0.806763 | 7.025197e-50 | -8.615850e-47 |
| Msa0502270 | Msa0741570 | 0.813086 | 3.058728e-51 | -8.615850e-47 |
| Msa0502270 | Msa0745060 | 0.806802 | 6.890240e-50 | -8.615850e-47 |
| Msa0502270 | Msa0762360 | 0.825713 | 4.033595e-54 | -8.615850e-47 |
| Msa0502270 | Msa0766630 | 0.858475 | 8.034157e-63 | -8.615850e-47 |
| Msa0502270 | Msa0777790 | 0.842638 | 2.287803e-58 | -8.615850e-47 |
| Msa0502270 | Msa0777930 | 0.800978 | 1.118514e-48 | -8.615850e-47 |
| Msa0502270 | Msa0810220 | 0.808556 | 2.923172e-50 | -8.615850e-47 |
| Msa0502270 | Msa0811080 | 0.819927 | 8.980984e-53 | -8.615850e-47 |
| Msa0502270 | Msa0825860 | 0.805663 | 1.197421e-49 | -8.615850e-47 |
| Msa0502270 | Msa0846210 | 0.800748 | 1.246291e-48 | -8.615850e-47 |
| Msa0502270 | Msa0846350 | 0.817655 | 2.946030e-52 | -8.615850e-47 |
| Msa0502270 | Msa0885280 | 0.820621 | 6.227905e-53 | -8.615850e-47 |
| Msa0502270 | Msa0885290 | 0.826498 | 2.625437e-54 | -8.615850e-47 |
| Msa0502270 | Msa0907070 | 0.805158 | 1.527965e-49 | -8.615850e-47 |
| Msa0502270 | Msa0907260 | 0.826589 | 2.496316e-54 | -8.615850e-47 |
| Msa0502270 | Msa0935910 | 0.807284 | 5.450453e-50 | -8.615850e-47 |
| Msa0502270 | Msa0954910 | 0.802843 | 4.628034e-49 | -8.615850e-47 |
| Msa0502270 | Msa0954920 | 0.806385 | 8.441025e-50 | -8.615850e-47 |
| Msa0502270 | Msa0956270 | 0.809821 | 1.565518e-50 | -8.615850e-47 |
| Msa0502270 | Msa0975220 | 0.808907 | 2.458760e-50 | -8.615850e-47 |
| Msa0502270 | Msa0979410 | 0.810676 | 1.024095e-50 | -8.615850e-47 |
| Msa0502270 | Msa0989060 | 0.814096 | 1.832991e-51 | -8.615850e-47 |
| Msa0502270 | Msa1014540 | 0.810692 | 1.015874e-50 | -8.615850e-47 |
| Msa0502270 | Msa1024240 | 0.815500 | 8.956288e-52 | -8.615850e-47 |
| Msa0502270 | Msa1065570 | 0.829033 | 6.452991e-55 | -8.615850e-47 |
| Msa0502270 | Msa1082500 | 0.813600 | 2.358170e-51 | -8.615850e-47 |
| Msa0502270 | Msa1092990 | 0.803297 | 3.727631e-49 | -8.615850e-47 |
| Msa0502270 | Msa1100980 | 0.813594 | 2.365442e-51 | -8.615850e-47 |
| Msa0502270 | Msa1111150 | 0.803604 | 3.219938e-49 | -8.615850e-47 |
| Msa0502270 | Msa1121490 | 0.801301 | 9.604076e-49 | -8.615850e-47 |
| Msa0502270 | Msa1136090 | 0.822770 | 1.983095e-53 | -8.615850e-47 |
| Msa0502270 | Msa1137690 | 0.819062 | 1.414163e-52 | -8.615850e-47 |
| Msa0502270 | Msa1160670 | 0.861822 | 7.830196e-64 | -8.615850e-47 |
| Msa0502270 | Msa1160690 | 0.816915 | 4.323529e-52 | -8.615850e-47 |
| Msa0502270 | Msa1187940 | 0.825416 | 4.743754e-54 | -8.615850e-47 |
| Msa0502270 | Msa1187950 | 0.826238 | 3.027316e-54 | -8.615850e-47 |
| Msa0502270 | Msa1195920 | 0.804379 | 2.222673e-49 | -8.615850e-47 |
| Msa0502270 | Msa1269670 | 0.806005 | 1.014746e-49 | -8.615850e-47 |
| Msa0502270 | Msa1284680 | 0.813641 | 2.309443e-51 | -8.615850e-47 |
| Msa0502270 | Msa1285930 | 0.807133 | 5.865055e-50 | -8.615850e-47 |
| Msa0502270 | Msa1297210 | 0.826167 | 3.147578e-54 | -8.615850e-47 |
| Msa0502270 | Msa1298260 | 0.802039 | 6.776372e-49 | -8.615850e-47 |
| Msa0502270 | Msa1397610 | 0.800251 | 1.572919e-48 | -8.615850e-47 |
| Msa0502270 | Msa1404000 | 0.807173 | 5.751594e-50 | -8.615850e-47 |
| Msa0502270 | Msa1422180 | 0.819184 | 1.327073e-52 | -8.615850e-47 |
| Msa0502270 | Msa1438250 | 0.817162 | 3.805013e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502270 | MtrunA17_Chr8g0353751 | 77.966 | 118 | 10 | 1 | 50 | 151 | 31 | 148 | 2.37e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502270 | AT3G12280.2 | 47.368 | 114 | 44 | 2 | 54 | 151 | 31 | 144 | 4.58e-26 | 103 |
| Msa0502270 | AT3G12280.1 | 47.368 | 114 | 44 | 2 | 54 | 151 | 31 | 144 | 4.58e-26 | 103 |
Find 45 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATCGATTGCTTAAAAT+TGG | 0.181934 | 3_4:-44345793 | None:intergenic |
| AGATGGAAGTTGGGGATATT+AGG | 0.184788 | 3_4:-44344613 | None:intergenic |
| GCTTCTGCTGTTTGGCCTTT+TGG | 0.186951 | 3_4:+44345189 | Msa0502270:CDS |
| CAGATCCATTGCTTCTTTAC+AGG | 0.208304 | 3_4:-44345357 | None:intergenic |
| CGAGAGAGTGAGATGGAAGT+TGG | 0.292056 | 3_4:-44344623 | None:intergenic |
| TTCCCTTCTCCGCCATTTCA+CGG | 0.317675 | 3_4:+44344709 | Msa0502270:five_prime_UTR |
| GATGGAAGTTGGGGATATTA+GGG | 0.321992 | 3_4:-44344612 | None:intergenic |
| AGAGAGAAAGTTGAATGAAT+TGG | 0.333762 | 3_4:-44344532 | None:intergenic |
| CATGGCAAATGTTTCATCAA+TGG | 0.366338 | 3_4:+44345403 | Msa0502270:CDS |
| GAGAGAGTGAGATGGAAGTT+GGG | 0.366637 | 3_4:-44344622 | None:intergenic |
| ATTTGCCATGAGAAGATGTT+TGG | 0.379727 | 3_4:-44345390 | None:intergenic |
| AAAGATGAGATTGAGAATAC+TGG | 0.403583 | 3_4:+44345602 | Msa0502270:CDS |
| CAGAAGAAGCAGAGCGGTGC+TGG | 0.404107 | 3_4:+44345522 | Msa0502270:CDS |
| AATGTTTCATCAATGGGAAA+TGG | 0.408483 | 3_4:+44345410 | Msa0502270:CDS |
| TGGGGATATTAGGGTTTCAA+TGG | 0.409813 | 3_4:-44344603 | None:intergenic |
| GCAATCGATTTAGCTCTGAT+TGG | 0.415284 | 3_4:+44345803 | Msa0502270:CDS |
| AAAGAAGCAATGGATCTGTT+TGG | 0.423829 | 3_4:+44345362 | Msa0502270:CDS |
| ATGGCAAATGTTTCATCAAT+GGG | 0.427540 | 3_4:+44345404 | Msa0502270:CDS |
| TATTTGTTCTGTGCAATCTC+AGG | 0.441400 | 3_4:+44344763 | Msa0502270:CDS |
| CAATCGATTTAGCTCTGATT+GGG | 0.455232 | 3_4:+44345804 | Msa0502270:CDS |
| AAACCGTGAAATGGCGGAGA+AGG | 0.487778 | 3_4:-44344712 | None:intergenic |
| CTGCTGTTATAGCTCTCGAC+TGG | 0.487878 | 3_4:+44345158 | Msa0502270:CDS |
| ACTTCCTCAGTTTGTTGTCA+AGG | 0.489779 | 3_4:+44345765 | Msa0502270:CDS |
| AGATGAGAAGGAGGTAGCGA+TGG | 0.513052 | 3_4:-44344674 | None:intergenic |
| GGGGATATTAGGGTTTCAAT+GGG | 0.524270 | 3_4:-44344602 | None:intergenic |
| GTAGCAGAATGAGCTAGCAT+TGG | 0.529220 | 3_4:+44345325 | Msa0502270:intron |
| AGAACGAATAAACCGTGAAA+TGG | 0.530830 | 3_4:-44344721 | None:intergenic |
| CGATGTGGTCAGAGATGAGA+AGG | 0.536025 | 3_4:-44344686 | None:intergenic |
| AGAGAGTGAGATGGAAGTTG+GGG | 0.540686 | 3_4:-44344621 | None:intergenic |
| ACGAATAAACCGTGAAATGG+CGG | 0.549973 | 3_4:-44344718 | None:intergenic |
| CACAAAACTGAAACACCAAA+AGG | 0.551426 | 3_4:-44345204 | None:intergenic |
| AACCGTGAAATGGCGGAGAA+GGG | 0.554676 | 3_4:-44344711 | None:intergenic |
| GAAAACCTGTAAAGAAGCAA+TGG | 0.555152 | 3_4:+44345352 | Msa0502270:CDS |
| AGTAGATCGAGAGAGTGAGA+TGG | 0.559499 | 3_4:-44344630 | None:intergenic |
| CTCTCGATCTACTCCACTGA+AGG | 0.575069 | 3_4:+44344640 | Msa0502270:five_prime_UTR |
| CAAATATGTCAAACATGAGA+CGG | 0.588251 | 3_4:-44344746 | None:intergenic |
| TTATCTAGTCAAAGCTCTAG+TGG | 0.590980 | 3_4:-44346034 | None:intergenic |
| GGAGACAAGAGAGCCTTCAG+TGG | 0.593032 | 3_4:-44344653 | None:intergenic |
| TTCATCAATGGGAAATGGAA+CGG | 0.599659 | 3_4:+44345415 | Msa0502270:CDS |
| AGAAACCAAACATCTTCTCA+TGG | 0.615290 | 3_4:+44345385 | Msa0502270:CDS |
| TGTGGTCAGAGATGAGAAGG+AGG | 0.637119 | 3_4:-44344683 | None:intergenic |
| TGATTGGGAAAACAAGCTTG+AGG | 0.653830 | 3_4:+44345819 | Msa0502270:CDS |
| TTCAGACAGAAGAAGCAGAG+CGG | 0.693835 | 3_4:+44345516 | Msa0502270:intron |
| TCAGCCTTGACAACAAACTG+AGG | 0.709180 | 3_4:-44345769 | None:intergenic |
| TGGCGGAGAAGGGAACGATG+TGG | 0.729555 | 3_4:-44344701 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTGTTTTTAATGAAA+TGG | + | chr3_4:44344872-44344891 | Msa0502270:intron | 10.0% |
| !!! | ATTTTTGTTTTTAATGAAAT+GGG | + | chr3_4:44344873-44344892 | Msa0502270:intron | 10.0% |
| !! | TAAAAATTAATATCATGAAA+GGG | - | chr3_4:44345030-44345049 | None:intergenic | 10.0% |
| !!! | ATATTAATTTTTACTTTGAT+GGG | + | chr3_4:44345037-44345056 | Msa0502270:intron | 10.0% |
| !!! | AATTTTTGTTTTTAATGAAA+TGG | + | chr3_4:44344872-44344891 | Msa0502270:intron | 10.0% |
| !!! | ATTTTTGTTTTTAATGAAAT+GGG | + | chr3_4:44344873-44344892 | Msa0502270:intron | 10.0% |
| !! | TAAAAATTAATATCATGAAA+GGG | - | chr3_4:44345030-44345049 | None:intergenic | 10.0% |
| !!! | ATATTAATTTTTACTTTGAT+GGG | + | chr3_4:44345037-44345056 | Msa0502270:intron | 10.0% |
| !! | GTAAAAATTAATATCATGAA+AGG | - | chr3_4:44345031-44345050 | None:intergenic | 15.0% |
| !!! | GATATTAATTTTTACTTTGA+TGG | + | chr3_4:44345036-44345055 | Msa0502270:intron | 15.0% |
| !! | AAAATATTATATTATCACGT+AGG | - | chr3_4:44345261-44345280 | None:intergenic | 15.0% |
| !!! | TAATATAATATTTTTGTGAC+AGG | + | chr3_4:44345267-44345286 | Msa0502270:intron | 15.0% |
| !! | GTAAAAATTAATATCATGAA+AGG | - | chr3_4:44345031-44345050 | None:intergenic | 15.0% |
| !!! | GATATTAATTTTTACTTTGA+TGG | + | chr3_4:44345036-44345055 | Msa0502270:intron | 15.0% |
| !! | AAAATATTATATTATCACGT+AGG | - | chr3_4:44345261-44345280 | None:intergenic | 15.0% |
| !!! | TAATATAATATTTTTGTGAC+AGG | + | chr3_4:44345267-44345286 | Msa0502270:intron | 15.0% |
| !!! | ATTTGTTGAAAATTAGAGTT+TGG | + | chr3_4:44344926-44344945 | Msa0502270:intron | 20.0% |
| !! | ATAAAAACTTCAATGACAAA+TGG | - | chr3_4:44345470-44345489 | None:intergenic | 20.0% |
| !! | GTATATAATCACAATTAACT+TGG | - | chr3_4:44345880-44345899 | None:intergenic | 20.0% |
| !! | CACATATATTAATTCAAAAC+AGG | - | chr3_4:44345946-44345965 | None:intergenic | 20.0% |
| !!! | ATTTGTTGAAAATTAGAGTT+TGG | + | chr3_4:44344926-44344945 | Msa0502270:intron | 20.0% |
| !! | ATAAAAACTTCAATGACAAA+TGG | - | chr3_4:44345470-44345489 | None:intergenic | 20.0% |
| !! | GTATATAATCACAATTAACT+TGG | - | chr3_4:44345880-44345899 | None:intergenic | 20.0% |
| !! | CACATATATTAATTCAAAAC+AGG | - | chr3_4:44345946-44345965 | None:intergenic | 20.0% |
| ! | AATTGAACATCTCCTATATT+GGG | - | chr3_4:44344821-44344840 | None:intergenic | 25.0% |
| ! | AAATTGAACATCTCCTATAT+TGG | - | chr3_4:44344822-44344841 | None:intergenic | 25.0% |
| !!! | AAATGGGTTTGTTGAAATTT+TGG | + | chr3_4:44344889-44344908 | Msa0502270:intron | 25.0% |
| ! | AAAATTAGAGTTTGGTTAGT+GGG | + | chr3_4:44344934-44344953 | Msa0502270:intron | 25.0% |
| !!! | AGTTTTTATTTGAAGTCATG+AGG | + | chr3_4:44345481-44345500 | Msa0502270:intron | 25.0% |
| !!! | TTATTTTATGCTCTATCAAG+AGG | + | chr3_4:44345552-44345571 | Msa0502270:CDS | 25.0% |
| ! | CAAACTCTAATACTAGATAA+AGG | - | chr3_4:44345679-44345698 | None:intergenic | 25.0% |
| ! | TAGTATTAGAGTTTGTAGTT+TGG | + | chr3_4:44345684-44345703 | Msa0502270:intron | 25.0% |
| ! | CTAAATCGATTGCTTAAAAT+TGG | - | chr3_4:44345796-44345815 | None:intergenic | 25.0% |
| ! | AATTGAACATCTCCTATATT+GGG | - | chr3_4:44344821-44344840 | None:intergenic | 25.0% |
| ! | AAATTGAACATCTCCTATAT+TGG | - | chr3_4:44344822-44344841 | None:intergenic | 25.0% |
| !!! | AAATGGGTTTGTTGAAATTT+TGG | + | chr3_4:44344889-44344908 | Msa0502270:intron | 25.0% |
| ! | AAAATTAGAGTTTGGTTAGT+GGG | + | chr3_4:44344934-44344953 | Msa0502270:intron | 25.0% |
| !!! | AGTTTTTATTTGAAGTCATG+AGG | + | chr3_4:44345481-44345500 | Msa0502270:intron | 25.0% |
| !!! | TTATTTTATGCTCTATCAAG+AGG | + | chr3_4:44345552-44345571 | Msa0502270:CDS | 25.0% |
| ! | CAAACTCTAATACTAGATAA+AGG | - | chr3_4:44345679-44345698 | None:intergenic | 25.0% |
| ! | TAGTATTAGAGTTTGTAGTT+TGG | + | chr3_4:44345684-44345703 | Msa0502270:intron | 25.0% |
| ! | CTAAATCGATTGCTTAAAAT+TGG | - | chr3_4:44345796-44345815 | None:intergenic | 25.0% |
| AGAGAGAAAGTTGAATGAAT+TGG | - | chr3_4:44344535-44344554 | None:intergenic | 30.0% | |
| CAAATATGTCAAACATGAGA+CGG | - | chr3_4:44344749-44344768 | None:intergenic | 30.0% | |
| ATTGAACATCTCCTATATTG+GGG | - | chr3_4:44344820-44344839 | None:intergenic | 30.0% | |
| GAAAATTAGAGTTTGGTTAG+TGG | + | chr3_4:44344933-44344952 | Msa0502270:intron | 30.0% | |
| ATGGCAAATGTTTCATCAAT+GGG | + | chr3_4:44345404-44345423 | Msa0502270:CDS | 30.0% | |
| AATGTTTCATCAATGGGAAA+TGG | + | chr3_4:44345410-44345429 | Msa0502270:CDS | 30.0% | |
| AAAGATGAGATTGAGAATAC+TGG | + | chr3_4:44345602-44345621 | Msa0502270:CDS | 30.0% | |
| CACAAGCAAACATAAAAGAT+TGG | - | chr3_4:44345917-44345936 | None:intergenic | 30.0% | |
| ! | ATCTTTTATGTTTGCTTGTG+CGG | + | chr3_4:44345917-44345936 | Msa0502270:intron | 30.0% |
| AGAGAGAAAGTTGAATGAAT+TGG | - | chr3_4:44344535-44344554 | None:intergenic | 30.0% | |
| CAAATATGTCAAACATGAGA+CGG | - | chr3_4:44344749-44344768 | None:intergenic | 30.0% | |
| ATTGAACATCTCCTATATTG+GGG | - | chr3_4:44344820-44344839 | None:intergenic | 30.0% | |
| GAAAATTAGAGTTTGGTTAG+TGG | + | chr3_4:44344933-44344952 | Msa0502270:intron | 30.0% | |
| ATGGCAAATGTTTCATCAAT+GGG | + | chr3_4:44345404-44345423 | Msa0502270:CDS | 30.0% | |
| AATGTTTCATCAATGGGAAA+TGG | + | chr3_4:44345410-44345429 | Msa0502270:CDS | 30.0% | |
| AAAGATGAGATTGAGAATAC+TGG | + | chr3_4:44345602-44345621 | Msa0502270:CDS | 30.0% | |
| CACAAGCAAACATAAAAGAT+TGG | - | chr3_4:44345917-44345936 | None:intergenic | 30.0% | |
| ! | ATCTTTTATGTTTGCTTGTG+CGG | + | chr3_4:44345917-44345936 | Msa0502270:intron | 30.0% |
| AGAACGAATAAACCGTGAAA+TGG | - | chr3_4:44344724-44344743 | None:intergenic | 35.0% | |
| TATTTGTTCTGTGCAATCTC+AGG | + | chr3_4:44344763-44344782 | Msa0502270:CDS | 35.0% | |
| ATAGACTGCATTTGTGTTTG+TGG | + | chr3_4:44345084-44345103 | Msa0502270:intron | 35.0% | |
| CACAAAACTGAAACACCAAA+AGG | - | chr3_4:44345207-44345226 | None:intergenic | 35.0% | |
| !! | TGTTTCAGTTTTGTGCTGTT+AGG | + | chr3_4:44345212-44345231 | Msa0502270:intron | 35.0% |
| !! | TTTGTGCTGTTAGGTTGTTT+TGG | + | chr3_4:44345221-44345240 | Msa0502270:intron | 35.0% |
| GAAAACCTGTAAAGAAGCAA+TGG | + | chr3_4:44345352-44345371 | Msa0502270:CDS | 35.0% | |
| AAAGAAGCAATGGATCTGTT+TGG | + | chr3_4:44345362-44345381 | Msa0502270:CDS | 35.0% | |
| AGAAACCAAACATCTTCTCA+TGG | + | chr3_4:44345385-44345404 | Msa0502270:CDS | 35.0% | |
| ATTTGCCATGAGAAGATGTT+TGG | - | chr3_4:44345393-44345412 | None:intergenic | 35.0% | |
| CATGGCAAATGTTTCATCAA+TGG | + | chr3_4:44345403-44345422 | Msa0502270:CDS | 35.0% | |
| TTCATCAATGGGAAATGGAA+CGG | + | chr3_4:44345415-44345434 | Msa0502270:CDS | 35.0% | |
| !! | CAATCGATTTAGCTCTGATT+GGG | + | chr3_4:44345804-44345823 | Msa0502270:CDS | 35.0% |
| ! | TCTTTTATGTTTGCTTGTGC+GGG | + | chr3_4:44345918-44345937 | Msa0502270:intron | 35.0% |
| AGAACGAATAAACCGTGAAA+TGG | - | chr3_4:44344724-44344743 | None:intergenic | 35.0% | |
| TATTTGTTCTGTGCAATCTC+AGG | + | chr3_4:44344763-44344782 | Msa0502270:CDS | 35.0% | |
| ATAGACTGCATTTGTGTTTG+TGG | + | chr3_4:44345084-44345103 | Msa0502270:intron | 35.0% | |
| CACAAAACTGAAACACCAAA+AGG | - | chr3_4:44345207-44345226 | None:intergenic | 35.0% | |
| !! | TGTTTCAGTTTTGTGCTGTT+AGG | + | chr3_4:44345212-44345231 | Msa0502270:intron | 35.0% |
| !! | TTTGTGCTGTTAGGTTGTTT+TGG | + | chr3_4:44345221-44345240 | Msa0502270:intron | 35.0% |
| GAAAACCTGTAAAGAAGCAA+TGG | + | chr3_4:44345352-44345371 | Msa0502270:CDS | 35.0% | |
| AAAGAAGCAATGGATCTGTT+TGG | + | chr3_4:44345362-44345381 | Msa0502270:CDS | 35.0% | |
| AGAAACCAAACATCTTCTCA+TGG | + | chr3_4:44345385-44345404 | Msa0502270:CDS | 35.0% | |
| ATTTGCCATGAGAAGATGTT+TGG | - | chr3_4:44345393-44345412 | None:intergenic | 35.0% | |
| CATGGCAAATGTTTCATCAA+TGG | + | chr3_4:44345403-44345422 | Msa0502270:CDS | 35.0% | |
| TTCATCAATGGGAAATGGAA+CGG | + | chr3_4:44345415-44345434 | Msa0502270:CDS | 35.0% | |
| !! | CAATCGATTTAGCTCTGATT+GGG | + | chr3_4:44345804-44345823 | Msa0502270:CDS | 35.0% |
| ! | TCTTTTATGTTTGCTTGTGC+GGG | + | chr3_4:44345918-44345937 | Msa0502270:intron | 35.0% |
| GGGGATATTAGGGTTTCAAT+GGG | - | chr3_4:44344605-44344624 | None:intergenic | 40.0% | |
| TGGGGATATTAGGGTTTCAA+TGG | - | chr3_4:44344606-44344625 | None:intergenic | 40.0% | |
| GATGGAAGTTGGGGATATTA+GGG | - | chr3_4:44344615-44344634 | None:intergenic | 40.0% | |
| AGATGGAAGTTGGGGATATT+AGG | - | chr3_4:44344616-44344635 | None:intergenic | 40.0% | |
| ACGAATAAACCGTGAAATGG+CGG | - | chr3_4:44344721-44344740 | None:intergenic | 40.0% | |
| !! | TCAGCTTTGTTCCCCAATAT+AGG | + | chr3_4:44344806-44344825 | Msa0502270:intron | 40.0% |
| !! | TTTACTTTGATGGGTTGCTC+AGG | + | chr3_4:44345046-44345065 | Msa0502270:intron | 40.0% |
| ! | CTTTTGATGCTTCTGCTGTT+TGG | + | chr3_4:44345181-44345200 | Msa0502270:CDS | 40.0% |
| CAGATCCATTGCTTCTTTAC+AGG | - | chr3_4:44345360-44345379 | None:intergenic | 40.0% | |
| TGTTCTCAGTATTCGACACA+AGG | - | chr3_4:44345633-44345652 | None:intergenic | 40.0% | |
| !! | ACTTCCTCAGTTTGTTGTCA+AGG | + | chr3_4:44345765-44345784 | Msa0502270:CDS | 40.0% |
| !! | GCAATCGATTTAGCTCTGAT+TGG | + | chr3_4:44345803-44345822 | Msa0502270:CDS | 40.0% |
| TGATTGGGAAAACAAGCTTG+AGG | + | chr3_4:44345819-44345838 | Msa0502270:CDS | 40.0% | |
| ! | CTTTTATGTTTGCTTGTGCG+GGG | + | chr3_4:44345919-44345938 | Msa0502270:intron | 40.0% |
| ! | TTTTATGTTTGCTTGTGCGG+GGG | + | chr3_4:44345920-44345939 | Msa0502270:intron | 40.0% |
| GGGGATATTAGGGTTTCAAT+GGG | - | chr3_4:44344605-44344624 | None:intergenic | 40.0% | |
| TGGGGATATTAGGGTTTCAA+TGG | - | chr3_4:44344606-44344625 | None:intergenic | 40.0% | |
| GATGGAAGTTGGGGATATTA+GGG | - | chr3_4:44344615-44344634 | None:intergenic | 40.0% | |
| AGATGGAAGTTGGGGATATT+AGG | - | chr3_4:44344616-44344635 | None:intergenic | 40.0% | |
| ACGAATAAACCGTGAAATGG+CGG | - | chr3_4:44344721-44344740 | None:intergenic | 40.0% | |
| !! | TCAGCTTTGTTCCCCAATAT+AGG | + | chr3_4:44344806-44344825 | Msa0502270:intron | 40.0% |
| !! | TTTACTTTGATGGGTTGCTC+AGG | + | chr3_4:44345046-44345065 | Msa0502270:intron | 40.0% |
| ! | CTTTTGATGCTTCTGCTGTT+TGG | + | chr3_4:44345181-44345200 | Msa0502270:CDS | 40.0% |
| CAGATCCATTGCTTCTTTAC+AGG | - | chr3_4:44345360-44345379 | None:intergenic | 40.0% | |
| TGTTCTCAGTATTCGACACA+AGG | - | chr3_4:44345633-44345652 | None:intergenic | 40.0% | |
| !! | ACTTCCTCAGTTTGTTGTCA+AGG | + | chr3_4:44345765-44345784 | Msa0502270:CDS | 40.0% |
| !! | GCAATCGATTTAGCTCTGAT+TGG | + | chr3_4:44345803-44345822 | Msa0502270:CDS | 40.0% |
| TGATTGGGAAAACAAGCTTG+AGG | + | chr3_4:44345819-44345838 | Msa0502270:CDS | 40.0% | |
| ! | CTTTTATGTTTGCTTGTGCG+GGG | + | chr3_4:44345919-44345938 | Msa0502270:intron | 40.0% |
| ! | TTTTATGTTTGCTTGTGCGG+GGG | + | chr3_4:44345920-44345939 | Msa0502270:intron | 40.0% |
| AGAGAGTGAGATGGAAGTTG+GGG | - | chr3_4:44344624-44344643 | None:intergenic | 45.0% | |
| GAGAGAGTGAGATGGAAGTT+GGG | - | chr3_4:44344625-44344644 | None:intergenic | 45.0% | |
| AGTAGATCGAGAGAGTGAGA+TGG | - | chr3_4:44344633-44344652 | None:intergenic | 45.0% | |
| GGAACAAAGCTGACAAAGAG+AGG | - | chr3_4:44344799-44344818 | None:intergenic | 45.0% | |
| GTTGCTCAGGACGTAATTTG+AGG | + | chr3_4:44345059-44345078 | Msa0502270:intron | 45.0% | |
| GCATTTGTGTTTGTGGACAG+TGG | + | chr3_4:44345091-44345110 | Msa0502270:intron | 45.0% | |
| !!! | GTGGCAGGTTTTTGGTGTTT+TGG | + | chr3_4:44345110-44345129 | Msa0502270:intron | 45.0% |
| !!! | GCAGGTTTTTGGTGTTTTGG+TGG | + | chr3_4:44345113-44345132 | Msa0502270:CDS | 45.0% |
| GTAGCAGAATGAGCTAGCAT+TGG | + | chr3_4:44345325-44345344 | Msa0502270:intron | 45.0% | |
| TTCAGACAGAAGAAGCAGAG+CGG | + | chr3_4:44345516-44345535 | Msa0502270:intron | 45.0% | |
| ! | GAGGCTGACTCAGAAAAATG+AGG | + | chr3_4:44345571-44345590 | Msa0502270:CDS | 45.0% |
| TCAGCCTTGACAACAAACTG+AGG | - | chr3_4:44345772-44345791 | None:intergenic | 45.0% | |
| AGAGAGTGAGATGGAAGTTG+GGG | - | chr3_4:44344624-44344643 | None:intergenic | 45.0% | |
| GAGAGAGTGAGATGGAAGTT+GGG | - | chr3_4:44344625-44344644 | None:intergenic | 45.0% | |
| AGTAGATCGAGAGAGTGAGA+TGG | - | chr3_4:44344633-44344652 | None:intergenic | 45.0% | |
| GGAACAAAGCTGACAAAGAG+AGG | - | chr3_4:44344799-44344818 | None:intergenic | 45.0% | |
| GTTGCTCAGGACGTAATTTG+AGG | + | chr3_4:44345059-44345078 | Msa0502270:intron | 45.0% | |
| GCATTTGTGTTTGTGGACAG+TGG | + | chr3_4:44345091-44345110 | Msa0502270:intron | 45.0% | |
| !!! | GTGGCAGGTTTTTGGTGTTT+TGG | + | chr3_4:44345110-44345129 | Msa0502270:intron | 45.0% |
| !!! | GCAGGTTTTTGGTGTTTTGG+TGG | + | chr3_4:44345113-44345132 | Msa0502270:CDS | 45.0% |
| GTAGCAGAATGAGCTAGCAT+TGG | + | chr3_4:44345325-44345344 | Msa0502270:intron | 45.0% | |
| TTCAGACAGAAGAAGCAGAG+CGG | + | chr3_4:44345516-44345535 | Msa0502270:intron | 45.0% | |
| ! | GAGGCTGACTCAGAAAAATG+AGG | + | chr3_4:44345571-44345590 | Msa0502270:CDS | 45.0% |
| TCAGCCTTGACAACAAACTG+AGG | - | chr3_4:44345772-44345791 | None:intergenic | 45.0% | |
| CGAGAGAGTGAGATGGAAGT+TGG | - | chr3_4:44344626-44344645 | None:intergenic | 50.0% | |
| CTCTCGATCTACTCCACTGA+AGG | + | chr3_4:44344640-44344659 | Msa0502270:five_prime_UTR | 50.0% | |
| AGATGAGAAGGAGGTAGCGA+TGG | - | chr3_4:44344677-44344696 | None:intergenic | 50.0% | |
| TGTGGTCAGAGATGAGAAGG+AGG | - | chr3_4:44344686-44344705 | None:intergenic | 50.0% | |
| CGATGTGGTCAGAGATGAGA+AGG | - | chr3_4:44344689-44344708 | None:intergenic | 50.0% | |
| TTCCCTTCTCCGCCATTTCA+CGG | + | chr3_4:44344709-44344728 | Msa0502270:five_prime_UTR | 50.0% | |
| ! | AACCGTGAAATGGCGGAGAA+GGG | - | chr3_4:44344714-44344733 | None:intergenic | 50.0% |
| ! | AAACCGTGAAATGGCGGAGA+AGG | - | chr3_4:44344715-44344734 | None:intergenic | 50.0% |
| TTGTGTTTGTGGACAGTGGC+AGG | + | chr3_4:44345095-44345114 | Msa0502270:intron | 50.0% | |
| ! | TGTGGACAGTGGCAGGTTTT+TGG | + | chr3_4:44345102-44345121 | Msa0502270:intron | 50.0% |
| CTGCTGTTATAGCTCTCGAC+TGG | + | chr3_4:44345158-44345177 | Msa0502270:CDS | 50.0% | |
| !! | GCTTCTGCTGTTTGGCCTTT+TGG | + | chr3_4:44345189-44345208 | Msa0502270:CDS | 50.0% |
| CGAGAGAGTGAGATGGAAGT+TGG | - | chr3_4:44344626-44344645 | None:intergenic | 50.0% | |
| CTCTCGATCTACTCCACTGA+AGG | + | chr3_4:44344640-44344659 | Msa0502270:five_prime_UTR | 50.0% | |
| AGATGAGAAGGAGGTAGCGA+TGG | - | chr3_4:44344677-44344696 | None:intergenic | 50.0% | |
| TGTGGTCAGAGATGAGAAGG+AGG | - | chr3_4:44344686-44344705 | None:intergenic | 50.0% | |
| CGATGTGGTCAGAGATGAGA+AGG | - | chr3_4:44344689-44344708 | None:intergenic | 50.0% | |
| TTCCCTTCTCCGCCATTTCA+CGG | + | chr3_4:44344709-44344728 | Msa0502270:five_prime_UTR | 50.0% | |
| ! | AACCGTGAAATGGCGGAGAA+GGG | - | chr3_4:44344714-44344733 | None:intergenic | 50.0% |
| ! | AAACCGTGAAATGGCGGAGA+AGG | - | chr3_4:44344715-44344734 | None:intergenic | 50.0% |
| TTGTGTTTGTGGACAGTGGC+AGG | + | chr3_4:44345095-44345114 | Msa0502270:intron | 50.0% | |
| ! | TGTGGACAGTGGCAGGTTTT+TGG | + | chr3_4:44345102-44345121 | Msa0502270:intron | 50.0% |
| CTGCTGTTATAGCTCTCGAC+TGG | + | chr3_4:44345158-44345177 | Msa0502270:CDS | 50.0% | |
| !! | GCTTCTGCTGTTTGGCCTTT+TGG | + | chr3_4:44345189-44345208 | Msa0502270:CDS | 50.0% |
| GGAGACAAGAGAGCCTTCAG+TGG | - | chr3_4:44344656-44344675 | None:intergenic | 55.0% | |
| GGAGACAAGAGAGCCTTCAG+TGG | - | chr3_4:44344656-44344675 | None:intergenic | 55.0% | |
| TGGCGGAGAAGGGAACGATG+TGG | - | chr3_4:44344704-44344723 | None:intergenic | 60.0% | |
| CAGAAGAAGCAGAGCGGTGC+TGG | + | chr3_4:44345522-44345541 | Msa0502270:CDS | 60.0% | |
| TGGCGGAGAAGGGAACGATG+TGG | - | chr3_4:44344704-44344723 | None:intergenic | 60.0% | |
| CAGAAGAAGCAGAGCGGTGC+TGG | + | chr3_4:44345522-44345541 | Msa0502270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 44344530 | 44346048 | 44344530 | ID=Msa0502270;Name=Msa0502270 |
| chr3_4 | mRNA | 44344530 | 44346048 | 44344530 | ID=Msa0502270-mRNA-1;Parent=Msa0502270;Name=Msa0502270-mRNA-1;_AED=0.40;_eAED=0.40;_QI=195|0.5|0.42|0.85|0.83|0.71|7|0|170 |
| chr3_4 | exon | 44344530 | 44344558 | 44344530 | ID=Msa0502270-mRNA-1:exon:9469;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44344587 | 44344784 | 44344587 | ID=Msa0502270-mRNA-1:exon:9470;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44345111 | 44345228 | 44345111 | ID=Msa0502270-mRNA-1:exon:9471;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44345329 | 44345436 | 44345329 | ID=Msa0502270-mRNA-1:exon:9472;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44345521 | 44345623 | 44345521 | ID=Msa0502270-mRNA-1:exon:9473;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44345752 | 44345840 | 44345752 | ID=Msa0502270-mRNA-1:exon:9474;Parent=Msa0502270-mRNA-1 |
| chr3_4 | exon | 44345986 | 44346048 | 44345986 | ID=Msa0502270-mRNA-1:exon:9475;Parent=Msa0502270-mRNA-1 |
| chr3_4 | five_prime_UTR | 44344530 | 44344558 | 44344530 | ID=Msa0502270-mRNA-1:five_prime_utr;Parent=Msa0502270-mRNA-1 |
| chr3_4 | five_prime_UTR | 44344587 | 44344752 | 44344587 | ID=Msa0502270-mRNA-1:five_prime_utr;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44344753 | 44344784 | 44344753 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44345111 | 44345228 | 44345111 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44345329 | 44345436 | 44345329 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44345521 | 44345623 | 44345521 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44345752 | 44345840 | 44345752 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| chr3_4 | CDS | 44345986 | 44346048 | 44345986 | ID=Msa0502270-mRNA-1:cds;Parent=Msa0502270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
