AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0208090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 32 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACACATTGATTTGTAATT+TGG 0.140423 2_1:+42323495 Msa0208090:three_prime_UTR
CTCCTTTCAGCCTTGCTTCT+TGG 0.187000 2_1:-42322785 None:intergenic
CATGGAATCAGAATATATTT+TGG 0.209718 2_1:+42321969 Msa0208090:exon
TTGTCAGGGTGGTGTGTATT+TGG 0.241438 2_1:+42323239 Msa0208090:intron
GTGATTAGAACTTCAACATT+TGG 0.355748 2_1:+42323388 Msa0208090:exon
TTGGATGATGATCCTTCTAT+TGG 0.360880 2_1:+42323258 Msa0208090:CDS
GATGAGTTAATTGATGGCTT+TGG 0.361682 2_1:+42323324 Msa0208090:CDS
GATGCAGATGAGTTAATTGA+TGG 0.378969 2_1:+42323318 Msa0208090:CDS
GAACTTCAACATTTGGAAGT+TGG 0.399003 2_1:+42323395 Msa0208090:exon
GAGAGAGAATGAAGAGAGAA+AGG 0.415063 2_1:-42321348 None:intergenic
TGTTGTTGCTGTTGGTTATG+TGG 0.435046 2_1:-42321416 None:intergenic
CGAGTAGCATTACCAATAGA+AGG 0.449193 2_1:-42323270 None:intergenic
CGTGGAAACAATGGAAATGA+TGG 0.500457 2_1:+42323291 Msa0208090:CDS
AAAGGGATCGAAAGAGTGAA+GGG 0.501299 2_1:-42321330 None:intergenic
AACCAAGAAGCAAGGCTGAA+AGG 0.520005 2_1:+42322783 Msa0208090:CDS
AAACAATGGAATCGATTGAC+TGG 0.523498 2_1:+42322825 Msa0208090:CDS
AGAGAGAATGAAGAGAGAAA+GGG 0.530109 2_1:-42321347 None:intergenic
CTAACCATTGTTGTTGCTGT+TGG 0.537375 2_1:-42321424 None:intergenic
CAAAATATATTCTGATTCCA+TGG 0.539959 2_1:-42321968 None:intergenic
GAAAGGGATCGAAAGAGTGA+AGG 0.541222 2_1:-42321331 None:intergenic
TCTTACGAAATTGGAAACAA+TGG 0.541384 2_1:+42322811 Msa0208090:CDS
GTGGCCTTGCGGTGATGCGA+TGG 0.572955 2_1:-42321397 None:intergenic
AATGCTACTCGTGGAAACAA+TGG 0.591030 2_1:+42323282 Msa0208090:CDS
TGGCATCCAAGTGGATCAGA+TGG 0.591756 2_1:+42321999 Msa0208090:CDS
TACTCACCATCTGATCCACT+TGG 0.595426 2_1:-42322005 None:intergenic
TTCACCATCGCATCACCGCA+AGG 0.626567 2_1:+42321393 Msa0208090:five_prime_UTR
CTGTTGGTTATGTGGCCTTG+CGG 0.643602 2_1:-42321408 None:intergenic
TCTATTGGTAATGCTACTCG+TGG 0.644613 2_1:+42323273 Msa0208090:CDS
GTTGCAGAAACCAAGAAGCA+AGG 0.649254 2_1:+42322775 Msa0208090:intron
GGATACTTATGGCATCCAAG+TGG 0.662827 2_1:+42321990 Msa0208090:CDS
TATGTGACAGGTGTAGACCA+TGG 0.672061 2_1:+42321951 Msa0208090:intron
ATAACCAACAGCAACAACAA+TGG 0.689118 2_1:+42321420 Msa0208090:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTAAATAACTAATTTTT+TGG + chr2_1:42321553-42321572 Msa0208090:intron 10.0%
!!! TACTAAATAACTAATTTTTT+GGG + chr2_1:42321554-42321573 Msa0208090:intron 10.0%
!!! TTACTAAATAACTAATTTTT+TGG + chr2_1:42321553-42321572 Msa0208090:intron 10.0%
!!! TACTAAATAACTAATTTTTT+GGG + chr2_1:42321554-42321573 Msa0208090:intron 10.0%
!!! TTTTTGATTGTGATTATTTT+TGG + chr2_1:42321597-42321616 Msa0208090:intron 15.0%
!!! TTTTGATTGTGATTATTTTT+GGG + chr2_1:42321598-42321617 Msa0208090:intron 15.0%
!! ATTACAATAAATAATGTGAA+GGG + chr2_1:42322242-42322261 Msa0208090:intron 15.0%
!! TATAAGAAAATTCATTAAGT+TGG - chr2_1:42323009-42323028 None:intergenic 15.0%
!!! TTGTTTATTTTTTTTTGTCA+GGG + chr2_1:42323225-42323244 Msa0208090:intron 15.0%
!!! TTTTTGATTGTGATTATTTT+TGG + chr2_1:42321597-42321616 Msa0208090:intron 15.0%
!!! TTTTGATTGTGATTATTTTT+GGG + chr2_1:42321598-42321617 Msa0208090:intron 15.0%
!! ATTACAATAAATAATGTGAA+GGG + chr2_1:42322242-42322261 Msa0208090:intron 15.0%
!! TATAAGAAAATTCATTAAGT+TGG - chr2_1:42323009-42323028 None:intergenic 15.0%
!!! TTGTTTATTTTTTTTTGTCA+GGG + chr2_1:42323225-42323244 Msa0208090:intron 15.0%
!!! GTCTTTGATTCTTATTTTTA+TGG + chr2_1:42321509-42321528 Msa0208090:intron 20.0%
!!! TTATGGTTTATGCAATTTTT+AGG + chr2_1:42321526-42321545 Msa0208090:intron 20.0%
!!! TATGGTTTATGCAATTTTTA+GGG + chr2_1:42321527-42321546 Msa0208090:intron 20.0%
!! TAACAAATATCCATTAAAAC+TGG - chr2_1:42321721-42321740 None:intergenic 20.0%
!! AATAATCACAATCAAAAACA+TGG - chr2_1:42321595-42321614 None:intergenic 20.0%
!!! TGTTTTTGATTGTGATTATT+TGG + chr2_1:42321595-42321614 Msa0208090:intron 20.0%
!!! AACTTTTACTAAGAATTAGT+GGG - chr2_1:42321872-42321891 None:intergenic 20.0%
!!! GAATATATTTTGGATACTTA+TGG + chr2_1:42321979-42321998 Msa0208090:CDS 20.0%
!! AAATTCAAAGGTTCAATTTA+TGG + chr2_1:42322036-42322055 Msa0208090:intron 20.0%
!! CATTACAATAAATAATGTGA+AGG + chr2_1:42322241-42322260 Msa0208090:intron 20.0%
!! TTACAATAAATAATGTGAAG+GGG + chr2_1:42322243-42322262 Msa0208090:intron 20.0%
!!! TGTCAAAATTTTCAAATTCA+AGG - chr2_1:42322276-42322295 None:intergenic 20.0%
!!! TGAATTTGAAAATTTTGACA+AGG + chr2_1:42322276-42322295 Msa0208090:intron 20.0%
!! TACTATTCAATAGTTTCATT+AGG + chr2_1:42322326-42322345 Msa0208090:intron 20.0%
!!! TTTTTTGTTGTATGAAATGA+AGG + chr2_1:42322626-42322645 Msa0208090:intron 20.0%
!!! CTTTACAGTTTTCTAAATTT+AGG + chr2_1:42322682-42322701 Msa0208090:intron 20.0%
!! GCTTGGTAAAATAAAATTAT+AGG + chr2_1:42323077-42323096 Msa0208090:intron 20.0%
!! AATCTTATAGTTGTTAATAG+AGG + chr2_1:42323112-42323131 Msa0208090:intron 20.0%
!! ATCTTATAGTTGTTAATAGA+GGG + chr2_1:42323113-42323132 Msa0208090:intron 20.0%
!!! CTTGTTTATTTTTTTTTGTC+AGG + chr2_1:42323224-42323243 Msa0208090:intron 20.0%
!!! TTACACATTGATTTGTAATT+TGG + chr2_1:42323495-42323514 Msa0208090:three_prime_UTR 20.0%
!!! TTTGGAATGAATTTTTGAAT+TGG + chr2_1:42323513-42323532 Msa0208090:three_prime_UTR 20.0%
!!! GTCTTTGATTCTTATTTTTA+TGG + chr2_1:42321509-42321528 Msa0208090:intron 20.0%
!!! TTATGGTTTATGCAATTTTT+AGG + chr2_1:42321526-42321545 Msa0208090:intron 20.0%
!!! TATGGTTTATGCAATTTTTA+GGG + chr2_1:42321527-42321546 Msa0208090:intron 20.0%
!! TAACAAATATCCATTAAAAC+TGG - chr2_1:42321721-42321740 None:intergenic 20.0%
!! AATAATCACAATCAAAAACA+TGG - chr2_1:42321595-42321614 None:intergenic 20.0%
!!! TGTTTTTGATTGTGATTATT+TGG + chr2_1:42321595-42321614 Msa0208090:intron 20.0%
!!! AACTTTTACTAAGAATTAGT+GGG - chr2_1:42321872-42321891 None:intergenic 20.0%
!!! GAATATATTTTGGATACTTA+TGG + chr2_1:42321979-42321998 Msa0208090:CDS 20.0%
!! AAATTCAAAGGTTCAATTTA+TGG + chr2_1:42322036-42322055 Msa0208090:intron 20.0%
!! CATTACAATAAATAATGTGA+AGG + chr2_1:42322241-42322260 Msa0208090:intron 20.0%
!! TTACAATAAATAATGTGAAG+GGG + chr2_1:42322243-42322262 Msa0208090:intron 20.0%
!!! TGTCAAAATTTTCAAATTCA+AGG - chr2_1:42322276-42322295 None:intergenic 20.0%
!!! TGAATTTGAAAATTTTGACA+AGG + chr2_1:42322276-42322295 Msa0208090:intron 20.0%
!! TACTATTCAATAGTTTCATT+AGG + chr2_1:42322326-42322345 Msa0208090:intron 20.0%
!!! TTTTTTGTTGTATGAAATGA+AGG + chr2_1:42322626-42322645 Msa0208090:intron 20.0%
!!! CTTTACAGTTTTCTAAATTT+AGG + chr2_1:42322682-42322701 Msa0208090:intron 20.0%
!! GCTTGGTAAAATAAAATTAT+AGG + chr2_1:42323077-42323096 Msa0208090:intron 20.0%
!! AATCTTATAGTTGTTAATAG+AGG + chr2_1:42323112-42323131 Msa0208090:intron 20.0%
!! ATCTTATAGTTGTTAATAGA+GGG + chr2_1:42323113-42323132 Msa0208090:intron 20.0%
!!! CTTGTTTATTTTTTTTTGTC+AGG + chr2_1:42323224-42323243 Msa0208090:intron 20.0%
!!! TTACACATTGATTTGTAATT+TGG + chr2_1:42323495-42323514 Msa0208090:three_prime_UTR 20.0%
!!! TTTGGAATGAATTTTTGAAT+TGG + chr2_1:42323513-42323532 Msa0208090:three_prime_UTR 20.0%
! ACAATTCATAAATCAATTCG+AGG - chr2_1:42321679-42321698 None:intergenic 25.0%
!!! TGTGATTATTTGGAATGTTT+TGG + chr2_1:42321760-42321779 Msa0208090:intron 25.0%
!!! ATTATTTGGAATGTTTTGGT+AGG + chr2_1:42321764-42321783 Msa0208090:intron 25.0%
! CTCAACTAATTATACTTCAT+GGG - chr2_1:42321804-42321823 None:intergenic 25.0%
! ACTCAACTAATTATACTTCA+TGG - chr2_1:42321805-42321824 None:intergenic 25.0%
!! CAACTTTTACTAAGAATTAG+TGG - chr2_1:42321873-42321892 None:intergenic 25.0%
! GTATTAGTGTAAAATATCAG+TGG + chr2_1:42321901-42321920 Msa0208090:intron 25.0%
! CAAAATATATTCTGATTCCA+TGG - chr2_1:42321971-42321990 None:intergenic 25.0%
!! CATGGAATCAGAATATATTT+TGG + chr2_1:42321969-42321988 Msa0208090:exon 25.0%
! AGTATCACTATCAAATTCAA+AGG + chr2_1:42322024-42322043 Msa0208090:intron 25.0%
! TGTACAATTTGTACATTCAA+AGG + chr2_1:42322103-42322122 Msa0208090:intron 25.0%
! TTCAAACAAACTATCACATT+TGG - chr2_1:42322143-42322162 None:intergenic 25.0%
!! ACGTTGAATTTTTACTTCTT+TGG + chr2_1:42322350-42322369 Msa0208090:intron 25.0%
! CTTGAGTTAAAGAACTTAAA+AGG + chr2_1:42322602-42322621 Msa0208090:intron 25.0%
! AGTAATTTCAATAGTACTTG+AGG - chr2_1:42322739-42322758 None:intergenic 25.0%
!!! ATTTTATGCCACTTCAATTA+AGG + chr2_1:42322889-42322908 Msa0208090:intron 25.0%
! ATGCAAACTACAAAAGAATT+TGG - chr2_1:42322932-42322951 None:intergenic 25.0%
!! TGAATTTTCTTATACTGCAT+AGG + chr2_1:42323015-42323034 Msa0208090:intron 25.0%
!! TAATTTTGTCATACCATAGT+TGG - chr2_1:42323050-42323069 None:intergenic 25.0%
!!! GAAGTTTTAGAATCAAGTTT+TGG + chr2_1:42323144-42323163 Msa0208090:intron 25.0%
!!! TTTATTTTTTTTTGTCAGGG+TGG + chr2_1:42323228-42323247 Msa0208090:intron 25.0%
! ACAATTCATAAATCAATTCG+AGG - chr2_1:42321679-42321698 None:intergenic 25.0%
!!! TGTGATTATTTGGAATGTTT+TGG + chr2_1:42321760-42321779 Msa0208090:intron 25.0%
!!! ATTATTTGGAATGTTTTGGT+AGG + chr2_1:42321764-42321783 Msa0208090:intron 25.0%
! CTCAACTAATTATACTTCAT+GGG - chr2_1:42321804-42321823 None:intergenic 25.0%
! ACTCAACTAATTATACTTCA+TGG - chr2_1:42321805-42321824 None:intergenic 25.0%
!! CAACTTTTACTAAGAATTAG+TGG - chr2_1:42321873-42321892 None:intergenic 25.0%
! GTATTAGTGTAAAATATCAG+TGG + chr2_1:42321901-42321920 Msa0208090:intron 25.0%
! CAAAATATATTCTGATTCCA+TGG - chr2_1:42321971-42321990 None:intergenic 25.0%
!! CATGGAATCAGAATATATTT+TGG + chr2_1:42321969-42321988 Msa0208090:exon 25.0%
! AGTATCACTATCAAATTCAA+AGG + chr2_1:42322024-42322043 Msa0208090:intron 25.0%
! TGTACAATTTGTACATTCAA+AGG + chr2_1:42322103-42322122 Msa0208090:intron 25.0%
! TTCAAACAAACTATCACATT+TGG - chr2_1:42322143-42322162 None:intergenic 25.0%
!! ACGTTGAATTTTTACTTCTT+TGG + chr2_1:42322350-42322369 Msa0208090:intron 25.0%
! CTTGAGTTAAAGAACTTAAA+AGG + chr2_1:42322602-42322621 Msa0208090:intron 25.0%
! AGTAATTTCAATAGTACTTG+AGG - chr2_1:42322739-42322758 None:intergenic 25.0%
!!! ATTTTATGCCACTTCAATTA+AGG + chr2_1:42322889-42322908 Msa0208090:intron 25.0%
! ATGCAAACTACAAAAGAATT+TGG - chr2_1:42322932-42322951 None:intergenic 25.0%
!! TGAATTTTCTTATACTGCAT+AGG + chr2_1:42323015-42323034 Msa0208090:intron 25.0%
!! TAATTTTGTCATACCATAGT+TGG - chr2_1:42323050-42323069 None:intergenic 25.0%
!!! GAAGTTTTAGAATCAAGTTT+TGG + chr2_1:42323144-42323163 Msa0208090:intron 25.0%
!!! TTTATTTTTTTTTGTCAGGG+TGG + chr2_1:42323228-42323247 Msa0208090:intron 25.0%
ACAATCACAAACACAAAAAG+GGG - chr2_1:42321472-42321491 None:intergenic 30.0%
CACAATCACAAACACAAAAA+GGG - chr2_1:42321473-42321492 None:intergenic 30.0%
TCACAATCACAAACACAAAA+AGG - chr2_1:42321474-42321493 None:intergenic 30.0%
!!! GTTTTGAAACCCAATGAAAT+CGG - chr2_1:42321651-42321670 None:intergenic 30.0%
!! TTTTCTCTCTCCAGTTTTAA+TGG + chr2_1:42321708-42321727 Msa0208090:intron 30.0%
!!! ACATTTTGTTTTGACTTGTG+CGG + chr2_1:42322072-42322091 Msa0208090:intron 30.0%
TTTAACTAAGCTTCTATCTG+TGG + chr2_1:42322164-42322183 Msa0208090:intron 30.0%
! ATAGCTAATGTGTAGGATTT+TGG + chr2_1:42322406-42322425 Msa0208090:intron 30.0%
! TAGCTAATGTGTAGGATTTT+GGG + chr2_1:42322407-42322426 Msa0208090:intron 30.0%
! ATGCATGATCTTTTTCTACT+AGG + chr2_1:42322469-42322488 Msa0208090:intron 30.0%
! TGCATGATCTTTTTCTACTA+GGG + chr2_1:42322470-42322489 Msa0208090:intron 30.0%
! AAGGAGTTTTCTTACGAAAT+TGG + chr2_1:42322802-42322821 Msa0208090:CDS 30.0%
TCTTACGAAATTGGAAACAA+TGG + chr2_1:42322811-42322830 Msa0208090:CDS 30.0%
!! TCTTTTGTAGTTTGCATGTT+TGG + chr2_1:42322935-42322954 Msa0208090:intron 30.0%
GGTATGACAAAATTACACAT+AGG + chr2_1:42323055-42323074 Msa0208090:intron 30.0%
!!! CTGGTCTTAGTTTAGTTTTA+TGG + chr2_1:42323193-42323212 Msa0208090:intron 30.0%
GTGATTAGAACTTCAACATT+TGG + chr2_1:42323388-42323407 Msa0208090:exon 30.0%
ACAATCACAAACACAAAAAG+GGG - chr2_1:42321472-42321491 None:intergenic 30.0%
CACAATCACAAACACAAAAA+GGG - chr2_1:42321473-42321492 None:intergenic 30.0%
TCACAATCACAAACACAAAA+AGG - chr2_1:42321474-42321493 None:intergenic 30.0%
!!! GTTTTGAAACCCAATGAAAT+CGG - chr2_1:42321651-42321670 None:intergenic 30.0%
!! TTTTCTCTCTCCAGTTTTAA+TGG + chr2_1:42321708-42321727 Msa0208090:intron 30.0%
!!! ACATTTTGTTTTGACTTGTG+CGG + chr2_1:42322072-42322091 Msa0208090:intron 30.0%
TTTAACTAAGCTTCTATCTG+TGG + chr2_1:42322164-42322183 Msa0208090:intron 30.0%
! ATAGCTAATGTGTAGGATTT+TGG + chr2_1:42322406-42322425 Msa0208090:intron 30.0%
! TAGCTAATGTGTAGGATTTT+GGG + chr2_1:42322407-42322426 Msa0208090:intron 30.0%
! ATGCATGATCTTTTTCTACT+AGG + chr2_1:42322469-42322488 Msa0208090:intron 30.0%
! TGCATGATCTTTTTCTACTA+GGG + chr2_1:42322470-42322489 Msa0208090:intron 30.0%
! AAGGAGTTTTCTTACGAAAT+TGG + chr2_1:42322802-42322821 Msa0208090:CDS 30.0%
TCTTACGAAATTGGAAACAA+TGG + chr2_1:42322811-42322830 Msa0208090:CDS 30.0%
!! TCTTTTGTAGTTTGCATGTT+TGG + chr2_1:42322935-42322954 Msa0208090:intron 30.0%
GGTATGACAAAATTACACAT+AGG + chr2_1:42323055-42323074 Msa0208090:intron 30.0%
!!! CTGGTCTTAGTTTAGTTTTA+TGG + chr2_1:42323193-42323212 Msa0208090:intron 30.0%
GTGATTAGAACTTCAACATT+TGG + chr2_1:42323388-42323407 Msa0208090:exon 30.0%
AGAGAGAATGAAGAGAGAAA+GGG - chr2_1:42321350-42321369 None:intergenic 35.0%
ATAACCAACAGCAACAACAA+TGG + chr2_1:42321420-42321439 Msa0208090:five_prime_UTR 35.0%
CACAATCAAAAACATGGCTA+TGG - chr2_1:42321744-42321763 None:intergenic 35.0%
GTTTACTTATCCTATGTGAC+AGG + chr2_1:42321939-42321958 Msa0208090:intron 35.0%
TTTACTTCTTTGGTTGCTAC+TGG + chr2_1:42322360-42322379 Msa0208090:intron 35.0%
TTACTTCTTTGGTTGCTACT+GGG + chr2_1:42322361-42322380 Msa0208090:intron 35.0%
TTTGGACATAGCTAATGTGT+AGG + chr2_1:42322399-42322418 Msa0208090:intron 35.0%
TGGTTTATGCAGGGATTATT+TGG + chr2_1:42322432-42322451 Msa0208090:intron 35.0%
GGTTTATGCAGGGATTATTT+GGG + chr2_1:42322433-42322452 Msa0208090:intron 35.0%
AAAGCAGGCAAAACATGATT+TGG - chr2_1:42322500-42322519 None:intergenic 35.0%
GATCTAAGAGTAACTAAAGC+AGG - chr2_1:42322515-42322534 None:intergenic 35.0%
AAGTGTGTGAGTTATGCTAA+TGG - chr2_1:42322563-42322582 None:intergenic 35.0%
AAACAATGGAATCGATTGAC+TGG + chr2_1:42322825-42322844 Msa0208090:CDS 35.0%
AAACTCTGCCTTAATTGAAG+TGG - chr2_1:42322900-42322919 None:intergenic 35.0%
TTTCTTATACTGCATAGGCT+TGG + chr2_1:42323020-42323039 Msa0208090:intron 35.0%
GACAAAATTACACATAGGCT+TGG + chr2_1:42323060-42323079 Msa0208090:intron 35.0%
TTGTTAATAGAGGGTTGAAG+AGG + chr2_1:42323122-42323141 Msa0208090:intron 35.0%
!!! AGAATCAAGTTTTGGCCTTA+TGG + chr2_1:42323152-42323171 Msa0208090:intron 35.0%
TGCAGCAACAAAAAACCATA+AGG - chr2_1:42323170-42323189 None:intergenic 35.0%
!!! GTTTTTTGTTGCTGCATTAC+TGG + chr2_1:42323174-42323193 Msa0208090:intron 35.0%
TTGGATGATGATCCTTCTAT+TGG + chr2_1:42323258-42323277 Msa0208090:CDS 35.0%
GATGCAGATGAGTTAATTGA+TGG + chr2_1:42323318-42323337 Msa0208090:CDS 35.0%
! GATGAGTTAATTGATGGCTT+TGG + chr2_1:42323324-42323343 Msa0208090:CDS 35.0%
GAACTTCAACATTTGGAAGT+TGG + chr2_1:42323395-42323414 Msa0208090:exon 35.0%
AGAGAGAATGAAGAGAGAAA+GGG - chr2_1:42321350-42321369 None:intergenic 35.0%
ATAACCAACAGCAACAACAA+TGG + chr2_1:42321420-42321439 Msa0208090:five_prime_UTR 35.0%
CACAATCAAAAACATGGCTA+TGG - chr2_1:42321744-42321763 None:intergenic 35.0%
GTTTACTTATCCTATGTGAC+AGG + chr2_1:42321939-42321958 Msa0208090:intron 35.0%
TTTACTTCTTTGGTTGCTAC+TGG + chr2_1:42322360-42322379 Msa0208090:intron 35.0%
TTACTTCTTTGGTTGCTACT+GGG + chr2_1:42322361-42322380 Msa0208090:intron 35.0%
TTTGGACATAGCTAATGTGT+AGG + chr2_1:42322399-42322418 Msa0208090:intron 35.0%
TGGTTTATGCAGGGATTATT+TGG + chr2_1:42322432-42322451 Msa0208090:intron 35.0%
GGTTTATGCAGGGATTATTT+GGG + chr2_1:42322433-42322452 Msa0208090:intron 35.0%
AAAGCAGGCAAAACATGATT+TGG - chr2_1:42322500-42322519 None:intergenic 35.0%
GATCTAAGAGTAACTAAAGC+AGG - chr2_1:42322515-42322534 None:intergenic 35.0%
AAGTGTGTGAGTTATGCTAA+TGG - chr2_1:42322563-42322582 None:intergenic 35.0%
AAACAATGGAATCGATTGAC+TGG + chr2_1:42322825-42322844 Msa0208090:CDS 35.0%
AAACTCTGCCTTAATTGAAG+TGG - chr2_1:42322900-42322919 None:intergenic 35.0%
TTTCTTATACTGCATAGGCT+TGG + chr2_1:42323020-42323039 Msa0208090:intron 35.0%
GACAAAATTACACATAGGCT+TGG + chr2_1:42323060-42323079 Msa0208090:intron 35.0%
TTGTTAATAGAGGGTTGAAG+AGG + chr2_1:42323122-42323141 Msa0208090:intron 35.0%
!!! AGAATCAAGTTTTGGCCTTA+TGG + chr2_1:42323152-42323171 Msa0208090:intron 35.0%
TGCAGCAACAAAAAACCATA+AGG - chr2_1:42323170-42323189 None:intergenic 35.0%
!!! GTTTTTTGTTGCTGCATTAC+TGG + chr2_1:42323174-42323193 Msa0208090:intron 35.0%
TTGGATGATGATCCTTCTAT+TGG + chr2_1:42323258-42323277 Msa0208090:CDS 35.0%
GATGCAGATGAGTTAATTGA+TGG + chr2_1:42323318-42323337 Msa0208090:CDS 35.0%
! GATGAGTTAATTGATGGCTT+TGG + chr2_1:42323324-42323343 Msa0208090:CDS 35.0%
GAACTTCAACATTTGGAAGT+TGG + chr2_1:42323395-42323414 Msa0208090:exon 35.0%
GAGAGAGAATGAAGAGAGAA+AGG - chr2_1:42321351-42321370 None:intergenic 40.0%
! TGTTGTTGCTGTTGGTTATG+TGG - chr2_1:42321419-42321438 None:intergenic 40.0%
! CTAACCATTGTTGTTGCTGT+TGG - chr2_1:42321427-42321446 None:intergenic 40.0%
!! CATACCCTACCGATTTCATT+GGG + chr2_1:42321639-42321658 Msa0208090:intron 40.0%
GAAACCCAATGAAATCGGTA+GGG - chr2_1:42321646-42321665 None:intergenic 40.0%
TGAAACCCAATGAAATCGGT+AGG - chr2_1:42321647-42321666 None:intergenic 40.0%
ACAACACACTCTCTTTCTCA+AGG + chr2_1:42321831-42321850 Msa0208090:intron 40.0%
TCTATCTGTGGTTGTGTATG+AGG + chr2_1:42322176-42322195 Msa0208090:intron 40.0%
! AAGGTTGCTGCTTGTTAAGT+TGG + chr2_1:42322295-42322314 Msa0208090:intron 40.0%
!!! AATGTGTAGGATTTTGGGAC+TGG + chr2_1:42322412-42322431 Msa0208090:intron 40.0%
!!! ATTTTGGGACTGGTTTATGC+AGG + chr2_1:42322422-42322441 Msa0208090:intron 40.0%
!!! TTTTGGGACTGGTTTATGCA+GGG + chr2_1:42322423-42322442 Msa0208090:intron 40.0%
TTGCATGTTTGGCTGTAATC+TGG + chr2_1:42322946-42322965 Msa0208090:intron 40.0%
TGCATGTTTGGCTGTAATCT+GGG + chr2_1:42322947-42322966 Msa0208090:intron 40.0%
! TAGGCTTGGTAATCCAACTA+TGG + chr2_1:42323034-42323053 Msa0208090:intron 40.0%
CGAGTAGCATTACCAATAGA+AGG - chr2_1:42323273-42323292 None:intergenic 40.0%
!! TCTATTGGTAATGCTACTCG+TGG + chr2_1:42323273-42323292 Msa0208090:CDS 40.0%
AATGCTACTCGTGGAAACAA+TGG + chr2_1:42323282-42323301 Msa0208090:CDS 40.0%
CGTGGAAACAATGGAAATGA+TGG + chr2_1:42323291-42323310 Msa0208090:CDS 40.0%
GAGAGAGAATGAAGAGAGAA+AGG - chr2_1:42321351-42321370 None:intergenic 40.0%
! TGTTGTTGCTGTTGGTTATG+TGG - chr2_1:42321419-42321438 None:intergenic 40.0%
! CTAACCATTGTTGTTGCTGT+TGG - chr2_1:42321427-42321446 None:intergenic 40.0%
!! CATACCCTACCGATTTCATT+GGG + chr2_1:42321639-42321658 Msa0208090:intron 40.0%
GAAACCCAATGAAATCGGTA+GGG - chr2_1:42321646-42321665 None:intergenic 40.0%
TGAAACCCAATGAAATCGGT+AGG - chr2_1:42321647-42321666 None:intergenic 40.0%
ACAACACACTCTCTTTCTCA+AGG + chr2_1:42321831-42321850 Msa0208090:intron 40.0%
TCTATCTGTGGTTGTGTATG+AGG + chr2_1:42322176-42322195 Msa0208090:intron 40.0%
! AAGGTTGCTGCTTGTTAAGT+TGG + chr2_1:42322295-42322314 Msa0208090:intron 40.0%
!!! AATGTGTAGGATTTTGGGAC+TGG + chr2_1:42322412-42322431 Msa0208090:intron 40.0%
!!! ATTTTGGGACTGGTTTATGC+AGG + chr2_1:42322422-42322441 Msa0208090:intron 40.0%
!!! TTTTGGGACTGGTTTATGCA+GGG + chr2_1:42322423-42322442 Msa0208090:intron 40.0%
TTGCATGTTTGGCTGTAATC+TGG + chr2_1:42322946-42322965 Msa0208090:intron 40.0%
TGCATGTTTGGCTGTAATCT+GGG + chr2_1:42322947-42322966 Msa0208090:intron 40.0%
! TAGGCTTGGTAATCCAACTA+TGG + chr2_1:42323034-42323053 Msa0208090:intron 40.0%
CGAGTAGCATTACCAATAGA+AGG - chr2_1:42323273-42323292 None:intergenic 40.0%
!! TCTATTGGTAATGCTACTCG+TGG + chr2_1:42323273-42323292 Msa0208090:CDS 40.0%
AATGCTACTCGTGGAAACAA+TGG + chr2_1:42323282-42323301 Msa0208090:CDS 40.0%
CGTGGAAACAATGGAAATGA+TGG + chr2_1:42323291-42323310 Msa0208090:CDS 40.0%
!! GCATACCCTACCGATTTCAT+TGG + chr2_1:42321638-42321657 Msa0208090:intron 45.0%
ATGGTCTACACCTGTCACAT+AGG - chr2_1:42321952-42321971 None:intergenic 45.0%
TATGTGACAGGTGTAGACCA+TGG + chr2_1:42321951-42321970 Msa0208090:intron 45.0%
GGATACTTATGGCATCCAAG+TGG + chr2_1:42321990-42322009 Msa0208090:CDS 45.0%
TACTCACCATCTGATCCACT+TGG - chr2_1:42322008-42322027 None:intergenic 45.0%
!!! TTGTTTTGACTTGTGCGGAC+TGG + chr2_1:42322077-42322096 Msa0208090:intron 45.0%
TGGTTGTGTATGAGGTAGTG+TGG + chr2_1:42322184-42322203 Msa0208090:intron 45.0%
GGTTGTGTATGAGGTAGTGT+GGG + chr2_1:42322185-42322204 Msa0208090:intron 45.0%
GGGATGTATCAACAGTGCTT+TGG + chr2_1:42322381-42322400 Msa0208090:intron 45.0%
GTTGCAGAAACCAAGAAGCA+AGG + chr2_1:42322775-42322794 Msa0208090:intron 45.0%
AACCAAGAAGCAAGGCTGAA+AGG + chr2_1:42322783-42322802 Msa0208090:CDS 45.0%
TTGTCAGGGTGGTGTGTATT+TGG + chr2_1:42323239-42323258 Msa0208090:intron 45.0%
GAAAGGGATCGAAAGAGTGA+AGG - chr2_1:42321334-42321353 None:intergenic 45.0%
!! GCATACCCTACCGATTTCAT+TGG + chr2_1:42321638-42321657 Msa0208090:intron 45.0%
ATGGTCTACACCTGTCACAT+AGG - chr2_1:42321952-42321971 None:intergenic 45.0%
TATGTGACAGGTGTAGACCA+TGG + chr2_1:42321951-42321970 Msa0208090:intron 45.0%
GGATACTTATGGCATCCAAG+TGG + chr2_1:42321990-42322009 Msa0208090:CDS 45.0%
TACTCACCATCTGATCCACT+TGG - chr2_1:42322008-42322027 None:intergenic 45.0%
!!! TTGTTTTGACTTGTGCGGAC+TGG + chr2_1:42322077-42322096 Msa0208090:intron 45.0%
TGGTTGTGTATGAGGTAGTG+TGG + chr2_1:42322184-42322203 Msa0208090:intron 45.0%
GGTTGTGTATGAGGTAGTGT+GGG + chr2_1:42322185-42322204 Msa0208090:intron 45.0%
GGGATGTATCAACAGTGCTT+TGG + chr2_1:42322381-42322400 Msa0208090:intron 45.0%
GTTGCAGAAACCAAGAAGCA+AGG + chr2_1:42322775-42322794 Msa0208090:intron 45.0%
AACCAAGAAGCAAGGCTGAA+AGG + chr2_1:42322783-42322802 Msa0208090:CDS 45.0%
TTGTCAGGGTGGTGTGTATT+TGG + chr2_1:42323239-42323258 Msa0208090:intron 45.0%
! CTGTTGGTTATGTGGCCTTG+CGG - chr2_1:42321411-42321430 None:intergenic 50.0%
TGGCATCCAAGTGGATCAGA+TGG + chr2_1:42321999-42322018 Msa0208090:CDS 50.0%
! GTTGCTGCAGCTCTAACAAG+TGG - chr2_1:42322717-42322736 None:intergenic 50.0%
CTCCTTTCAGCCTTGCTTCT+TGG - chr2_1:42322788-42322807 None:intergenic 50.0%
! CTGTTGGTTATGTGGCCTTG+CGG - chr2_1:42321411-42321430 None:intergenic 50.0%
TGGCATCCAAGTGGATCAGA+TGG + chr2_1:42321999-42322018 Msa0208090:CDS 50.0%
! GTTGCTGCAGCTCTAACAAG+TGG - chr2_1:42322717-42322736 None:intergenic 50.0%
CTCCTTTCAGCCTTGCTTCT+TGG - chr2_1:42322788-42322807 None:intergenic 50.0%
TTCACCATCGCATCACCGCA+AGG + chr2_1:42321393-42321412 Msa0208090:five_prime_UTR 55.0%
TTCACCATCGCATCACCGCA+AGG + chr2_1:42321393-42321412 Msa0208090:five_prime_UTR 55.0%
! GTGGCCTTGCGGTGATGCGA+TGG - chr2_1:42321400-42321419 None:intergenic 65.0%
! GTGGCCTTGCGGTGATGCGA+TGG - chr2_1:42321400-42321419 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 42321332 42323542 42321332 ID=Msa0208090;Name=Msa0208090
chr2_1 mRNA 42321332 42323542 42321332 ID=Msa0208090-mRNA-1;Parent=Msa0208090;Name=Msa0208090-mRNA-1;_AED=0.22;_eAED=0.23;_QI=119|0.5|0.8|1|0.25|0.4|5|147|94
chr2_1 exon 42321332 42321441 42321332 ID=Msa0208090-mRNA-1:exon:12698;Parent=Msa0208090-mRNA-1
chr2_1 exon 42321961 42322020 42321961 ID=Msa0208090-mRNA-1:exon:12699;Parent=Msa0208090-mRNA-1
chr2_1 exon 42322782 42322858 42322782 ID=Msa0208090-mRNA-1:exon:12700;Parent=Msa0208090-mRNA-1
chr2_1 exon 42322945 42322951 42322945 ID=Msa0208090-mRNA-1:exon:12701;Parent=Msa0208090-mRNA-1
chr2_1 exon 42323246 42323542 42323246 ID=Msa0208090-mRNA-1:exon:12702;Parent=Msa0208090-mRNA-1
chr2_1 five_prime_UTR 42321332 42321441 42321332 ID=Msa0208090-mRNA-1:five_prime_utr;Parent=Msa0208090-mRNA-1
chr2_1 five_prime_UTR 42321961 42321969 42321961 ID=Msa0208090-mRNA-1:five_prime_utr;Parent=Msa0208090-mRNA-1
chr2_1 CDS 42321970 42322020 42321970 ID=Msa0208090-mRNA-1:cds;Parent=Msa0208090-mRNA-1
chr2_1 CDS 42322782 42322858 42322782 ID=Msa0208090-mRNA-1:cds;Parent=Msa0208090-mRNA-1
chr2_1 CDS 42322945 42322951 42322945 ID=Msa0208090-mRNA-1:cds;Parent=Msa0208090-mRNA-1
chr2_1 CDS 42323246 42323395 42323246 ID=Msa0208090-mRNA-1:cds;Parent=Msa0208090-mRNA-1
chr2_1 three_prime_UTR 42323396 42323542 42323396 ID=Msa0208090-mRNA-1:three_prime_utr;Parent=Msa0208090-mRNA-1
Gene Sequence

>Msa0208090

ATGGAATCAGAATATATTTTGGATACTTATGGCATCCAAGTGGATCAGATGAAACCAAGAAGCAAGGCTGAAAGGAGTTTTCTTACGAAATTGGAAACAATGGAATCGATTGACTGGAAGCGTATAGTTTTGCATGGTGGTGTGTATTTGGATGATGATCCTTCTATTGGTAATGCTACTCGTGGAAACAATGGAAATGATGGTATAGATGCAGATGAGTTAATTGATGGCTTTGGAATTTACAAAATATTGAGTTTGATATTTTGTAGACATACAAGTGATTAG

Protein sequence

>Msa0208090

MESEYILDTYGIQVDQMKPRSKAERSFLTKLETMESIDWKRIVLHGGVYLDDDPSIGNATRGNNGNDGIDADELIDGFGIYKILSLIFCRHTSD*