AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504550 MtrunA17_Chr3g0105051 96.947 1081 32 1 1 1081 1 1080 0.0 2167
Msa0504550 MtrunA17_Chr5g0430201 57.282 1126 400 28 1 1080 1 1091 0.0 1104
Msa0504550 MtrunA17_Chr3g0113631 38.183 1134 589 33 1 1078 1 1078 0.0 607
Msa0504550 MtrunA17_Chr4g0073021 28.853 1168 613 44 1 1080 1 1038 1.45e-106 358
Msa0504550 MtrunA17_Chr1g0197121 30.899 534 294 20 6 509 7 495 3.97e-41 163
Msa0504550 MtrunA17_Chr7g0235711 37.391 230 132 4 600 826 13 233 1.25e-34 133
Msa0504550 MtrunA17_Chr2g0298801 31.607 560 270 24 1 507 1 500 1.33e-30 130
Msa0504550 MtrunA17_Chr1g0177421 27.788 529 297 23 1 500 1 473 3.76e-30 129
Msa0504550 MtrunA17_Chr1g0177421 28.821 229 152 5 624 844 510 735 1.41e-11 68.9
Msa0504550 MtrunA17_Chr4g0071701 38.023 263 136 7 9 263 9 252 6.93e-25 112
Msa0504550 MtrunA17_Chr4g0061371 29.189 185 103 6 671 843 556 724 1.37e-11 68.9
Msa0504550 MtrunA17_Chr3g0137071 31.395 172 96 6 681 843 656 814 4.90e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504550 AT2G29970.1 42.792 1103 506 35 1 1080 1 1001 0.0 724
Msa0504550 AT1G07200.2 40.433 1108 501 28 1 1080 1 977 0.0 692
Msa0504550 AT2G40130.2 44.099 483 212 17 1 463 1 445 2.22e-101 341
Msa0504550 AT2G40130.2 33.099 426 237 13 655 1068 512 901 1.20e-47 185
Msa0504550 AT2G40130.1 44.099 483 212 17 1 463 1 445 2.29e-101 341
Msa0504550 AT2G40130.1 33.099 426 237 13 655 1068 509 898 1.25e-47 185
Msa0504550 AT5G57710.1 29.259 1080 582 36 1 1036 1 942 2.94e-96 328
Msa0504550 AT1G07200.1 35.010 497 238 12 590 1080 3 420 2.20e-67 233
Msa0504550 AT3G52490.1 29.333 525 299 19 7 514 7 476 6.81e-40 160
Msa0504550 AT3G52490.1 27.228 202 140 3 650 845 547 747 1.09e-12 72.8
Msa0504550 AT4G30350.1 29.698 596 313 23 1 539 1 547 8.54e-40 160
Msa0504550 AT4G30350.1 26.374 455 248 13 605 1057 531 900 1.38e-35 147
Msa0504550 AT4G29920.1 29.153 590 280 22 1 507 1 535 1.28e-33 140
Msa0504550 AT4G29920.2 28.836 593 281 22 1 507 1 538 1.58e-32 137
Msa0504550 AT5G57130.1 26.016 615 299 20 1 504 1 570 1.62e-26 118
Msa0504550 AT1G74310.2 28.108 185 105 6 671 843 553 721 4.40e-11 67.8
Msa0504550 AT1G74310.1 28.108 185 105 5 671 843 553 721 6.40e-11 67.4

Find 238 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTTGTTGGAGGTTTA+TGG 0.130799 3_4:+49274397 Msa0504550:CDS
AATATTTCCCAAACATTAAC+AGG 0.207831 3_4:+49277229 Msa0504550:CDS
TTATTTAATTTGCAGCTTAA+TGG 0.221920 3_4:+49275743 Msa0504550:intron
GTTTGGGAAATATTGATTTC+AGG 0.232339 3_4:-49277220 None:intergenic
GTACTTGCAGAAACTCTATT+TGG 0.237968 3_4:+49277910 Msa0504550:CDS
TATTTAATTTGCAGCTTAAT+GGG 0.240310 3_4:+49275744 Msa0504550:intron
ATCTGTGGTGACGGGATTAA+AGG 0.244381 3_4:-49277500 None:intergenic
GCTGGTGTTGTTCTATGTTT+TGG 0.244808 3_4:+49274295 Msa0504550:CDS
TCTTATGATCACTTAGTTTC+GGG 0.247752 3_4:-49277570 None:intergenic
TTCTTATGATCACTTAGTTT+CGG 0.248562 3_4:-49277571 None:intergenic
GGAGACGGCGGCGGTGGTTT+TGG 0.263698 3_4:-49273633 None:intergenic
AAAACGACGCAGTTTGATTC+TGG 0.270613 3_4:-49273784 None:intergenic
CGTCACCACAGATTTGGTTT+TGG 0.271636 3_4:+49277510 Msa0504550:CDS
AGACTCCGACAGAGAGTTCT+AGG 0.272563 3_4:-49273589 None:intergenic
AGAGGCGTCACGGTCGTATC+TGG 0.276445 3_4:+49278473 Msa0504550:CDS
TTTGAGTTTGTTATTGGAAA+TGG 0.276607 3_4:+49274208 Msa0504550:CDS
CTCATTGGAATCACTGCTTT+CGG 0.276743 3_4:-49278418 None:intergenic
AGAGTTAAAGATGATGGATT+TGG 0.286880 3_4:-49275819 None:intergenic
CTTTCCTCGGGAAATATCTT+TGG 0.291800 3_4:-49278258 None:intergenic
CTTGGAACCCTGTTAATGTT+TGG 0.302700 3_4:-49277237 None:intergenic
GTATCAAAAGGTTGTGAAAA+TGG 0.303380 3_4:-49277385 None:intergenic
GATTTCCTTGCACAAATTGA+TGG 0.308028 3_4:+49278582 Msa0504550:CDS
CAAACTTGTGTTATCTTCAT+TGG 0.313695 3_4:-49277125 None:intergenic
TTTAACCCATCAAGCTCATT+AGG 0.314204 3_4:-49274160 None:intergenic
GTGGATTCAGATAGAGGATT+AGG 0.326823 3_4:+49275951 Msa0504550:CDS
TAGAACAGTGGATTTCATTA+AGG 0.328940 3_4:-49277303 None:intergenic
TCTTTAGACATGTAGGGAAT+TGG 0.329298 3_4:-49277328 None:intergenic
CTCAGTGGATTTAAGCTCTA+AGG 0.329643 3_4:+49277951 Msa0504550:CDS
AGGTTTATGGTGGGAAGATT+TGG 0.330662 3_4:+49274410 Msa0504550:CDS
AGGAAGAGGATCTAGCAATT+TGG 0.330709 3_4:-49277660 None:intergenic
AAACAATTTCAAACACCATT+TGG 0.331958 3_4:+49278669 Msa0504550:CDS
TTGATGATCCTATAGTTAGT+AGG 0.341711 3_4:+49273843 Msa0504550:CDS
TCACTTAGTTTCGGGGTATC+TGG 0.349818 3_4:-49277562 None:intergenic
TTCATTCCATCAGAATAATC+AGG 0.350311 3_4:-49279128 None:intergenic
TTGGAACCCTGTTAATGTTT+GGG 0.351629 3_4:-49277236 None:intergenic
TAATCCCGTCACCACAGATT+TGG 0.351664 3_4:+49277504 Msa0504550:CDS
CTTGCTAGTTACTTTCTCAT+TGG 0.353225 3_4:-49278433 None:intergenic
AGCTGAATATGTAATGAAAT+TGG 0.356412 3_4:+49278842 Msa0504550:CDS
GACATCTGCTACTCCTTCTA+TGG 0.357875 3_4:+49274528 Msa0504550:CDS
TGTGAATCTGTGATTTCTTA+TGG 0.361252 3_4:+49279076 Msa0504550:three_prime_UTR
TACATGTTCAGCTTTATCTT+TGG 0.361577 3_4:-49277419 None:intergenic
ATTTGGTTGGTGGGTGTAGC+AGG 0.364020 3_4:+49274427 Msa0504550:CDS
TTGAGTTTGTTATTGGAAAT+GGG 0.369479 3_4:+49274209 Msa0504550:CDS
ATTTGTATAATGTAGCTTGT+AGG 0.370139 3_4:+49278972 Msa0504550:three_prime_UTR
ATTTCCCTACCATGTGAGTA+TGG 0.370800 3_4:-49278159 None:intergenic
GTTTGCTTGAGAGCGTTTAA+TGG 0.377128 3_4:-49273702 None:intergenic
TGTAGTAAATGGAAGCTATC+TGG 0.381763 3_4:-49273737 None:intergenic
ACGAGGGGAGTAAGGGAAGG+TGG 0.386814 3_4:-49273552 None:intergenic
CTTTCACCGTTCTCCTCCTC+CGG 0.389204 3_4:+49273949 Msa0504550:CDS
ACATAGATGACTTGTGGTTA+AGG 0.389403 3_4:-49277477 None:intergenic
GTGTTGTGTTTGTTGTTTCA+AGG 0.391518 3_4:+49274371 Msa0504550:CDS
GCTGCATTATCTGTAGTAAA+TGG 0.394673 3_4:-49273748 None:intergenic
AAGTGGAGACGAGGGGAGTA+AGG 0.396612 3_4:-49273560 None:intergenic
AGCTTCAAGGATTCTTTCCT+CGG 0.401396 3_4:-49278271 None:intergenic
TCTTCGGATTGCAGAGGAAA+TGG 0.405547 3_4:+49277158 Msa0504550:CDS
CTTGTAGGGTATATATCATT+TGG 0.406781 3_4:+49278987 Msa0504550:three_prime_UTR
AGTTTGAATGCTAAGATCTT+CGG 0.408390 3_4:+49277142 Msa0504550:CDS
CATTGGCGCGCTGTGCTAAC+CGG 0.409460 3_4:-49273377 None:intergenic
AAATGGGAGTGAGGAGAAGA+TGG 0.412598 3_4:+49274225 Msa0504550:CDS
TGGTGGTGGGGAGACGGTCG+AGG 0.414278 3_4:-49273613 None:intergenic
TTCAAGGTTAACAAGGTTGT+TGG 0.414305 3_4:+49274387 Msa0504550:CDS
TTTGTATAATGTAGCTTGTA+GGG 0.419515 3_4:+49278973 Msa0504550:three_prime_UTR
GTTAATGTGGATTCAGATAG+AGG 0.421276 3_4:+49275945 Msa0504550:CDS
CGCGCTGTGCTAACCGGCGT+CGG 0.421555 3_4:-49273371 None:intergenic
AGCACAAAATTTGATCCAAA+TGG 0.422922 3_4:-49278684 None:intergenic
TTTCGATGGAAAATTTGAAA+TGG 0.426579 3_4:+49277696 Msa0504550:CDS
GAGTATAGTCCGTCCATAGA+AGG 0.428101 3_4:-49274541 None:intergenic
GGTGGGAAGATTTGGTTGGT+GGG 0.428555 3_4:+49274418 Msa0504550:CDS
TGAAAATGGTAACATCTGTT+TGG 0.429341 3_4:-49277371 None:intergenic
TTAATGCAAGTGAGTGTGTT+TGG 0.430699 3_4:-49273182 None:intergenic
ATTATGACACTTTGTAGATC+AGG 0.432244 3_4:+49277796 Msa0504550:CDS
CTAGAAGATGGTGGTGGTGG+TGG 0.432679 3_4:-49273923 None:intergenic
GTGAGGGTTTCAAAGAGAAA+TGG 0.434308 3_4:+49278363 Msa0504550:CDS
TGGTGGGAAGATTTGGTTGG+TGG 0.435896 3_4:+49274417 Msa0504550:CDS
AAGCTTACCTTGGTTACAAA+AGG 0.436176 3_4:+49275923 Msa0504550:CDS
CGTGGAGAGAAGTTGTTTGA+GGG 0.441317 3_4:-49273463 None:intergenic
GCGTGGAGAGAAGTTGTTTG+AGG 0.441415 3_4:-49273464 None:intergenic
TCGAATGTCACGATGTGCTT+AGG 0.443577 3_4:+49278001 Msa0504550:CDS
TTCAGATAGAGGATTAGGTT+TGG 0.444163 3_4:+49275956 Msa0504550:CDS
TTCCACGAGGGGTTTCGATT+CGG 0.446189 3_4:+49277265 Msa0504550:CDS
TCCGGAGGAGACGGCGGCGG+TGG 0.457326 3_4:-49273639 None:intergenic
ATCAGAATAATCAGGAGAAC+TGG 0.457425 3_4:-49279120 None:intergenic
TTGTTACAAGCAATAAGAAC+AGG 0.461715 3_4:+49278129 Msa0504550:CDS
GAAGCATCTTCAGCACTTGT+CGG 0.464177 3_4:+49277591 Msa0504550:CDS
TCTTCTGTGTTCAAAGTTGG+CGG 0.464178 3_4:+49278213 Msa0504550:CDS
TTAGCTCAAAGTGGAAAAGT+TGG 0.464881 3_4:+49274130 Msa0504550:CDS
GCATAAACACCCATCAAAAG+AGG 0.465899 3_4:-49274079 None:intergenic
CATTCGAAAATCGAGTTCAA+TGG 0.467152 3_4:-49277985 None:intergenic
GGATGAAGATGGTGAAGAGA+AGG 0.467340 3_4:-49273119 None:intergenic
CAGAGATACTTGCAGCTGCT+TGG 0.468281 3_4:+49278730 Msa0504550:CDS
TAATGCAAGTGAGTGTGTTT+GGG 0.468882 3_4:-49273181 None:intergenic
ACCACCGCCGCCGTCTCCTC+CGG 0.469398 3_4:+49273638 Msa0504550:CDS
CGGTGGGCCACCGTCATCTC+CGG 0.469966 3_4:-49273657 None:intergenic
TGATGATCCTATAGTTAGTA+GGG 0.470607 3_4:+49273844 Msa0504550:CDS
ACCTCTTCTGTGTTCAAAGT+TGG 0.473166 3_4:+49278210 Msa0504550:CDS
CAAGTGAGTGTGTTTGGGTA+TGG 0.474544 3_4:-49273176 None:intergenic
TGAACCGGACCGGTTTGAAA+CGG 0.475140 3_4:+49273988 Msa0504550:CDS
AGTTCTCCTGATTATTCTGA+TGG 0.476971 3_4:+49279122 Msa0504550:three_prime_UTR
TGCACAAATTGATGGAAAAG+TGG 0.479114 3_4:+49278590 Msa0504550:CDS
GCACTAAGAGTAGTATCAAA+AGG 0.479932 3_4:-49277397 None:intergenic
TTGTAACTCTTTAGACATGT+AGG 0.480247 3_4:-49277335 None:intergenic
AACATCTGTTTGGATGGAAA+TGG 0.480655 3_4:-49277361 None:intergenic
GATTGGATTGAACATGTTCT+CGG 0.483455 3_4:+49278780 Msa0504550:CDS
ACAGTCGTGGATTATATTGC+TGG 0.483553 3_4:+49278030 Msa0504550:CDS
ACCCCTCGTGGAATGGAGCT+TGG 0.485678 3_4:-49277255 None:intergenic
TCACAAAGAGTTAAAGATGA+TGG 0.485913 3_4:-49275825 None:intergenic
GTTGAACAAAATTTACATGC+TGG 0.488251 3_4:+49274277 Msa0504550:CDS
AATGGGAGTGAGGAGAAGAT+GGG 0.488956 3_4:+49274226 Msa0504550:CDS
GAGGGGTTTCGATTCGGTAG+AGG 0.491158 3_4:+49277271 Msa0504550:CDS
AGAGTTCTAGGGCACGGAAG+TGG 0.493582 3_4:-49273577 None:intergenic
TAGTTCACGTTAATTCTAGC+TGG 0.497870 3_4:-49278915 None:intergenic
TTTGTGGAAGAGCAAGCTAC+AGG 0.498965 3_4:+49278882 Msa0504550:CDS
GTGGAAAAGAAGCCACCAAA+TGG 0.501664 3_4:-49275777 None:intergenic
TACTCAGGTCATAATTTCGA+TGG 0.503903 3_4:+49277682 Msa0504550:CDS
CATCATCAACAAGCTTACCT+TGG 0.505171 3_4:+49275913 Msa0504550:CDS
AATCGAAACCCCTCGTGGAA+TGG 0.506142 3_4:-49277262 None:intergenic
CTAACCGGCGTCGGCATCAC+CGG 0.506372 3_4:-49273362 None:intergenic
GCAAGTAAATCAAAATTGAA+TGG 0.507263 3_4:-49278621 None:intergenic
CGGACCGGTTTGAAACGGTT+CGG 0.508642 3_4:+49273993 Msa0504550:CDS
AGTGGAGACGAGGGGAGTAA+GGG 0.509111 3_4:-49273559 None:intergenic
TGTAACTCTTTAGACATGTA+GGG 0.509316 3_4:-49277334 None:intergenic
GCCATGAGAGAGTTGGAAAC+CGG 0.510278 3_4:-49273677 None:intergenic
CTGCTTCGTCAGTTAAACAT+TGG 0.510619 3_4:-49273394 None:intergenic
GCAGGCGGCGCGTAGAGTAT+TGG 0.510804 3_4:-49273513 None:intergenic
TTGGTTACAAAAGGTTAATG+TGG 0.518434 3_4:+49275932 Msa0504550:CDS
AGGTTGTTGGAGGTTTATGG+TGG 0.519138 3_4:+49274400 Msa0504550:CDS
GAGACGAGGGGAGTAAGGGA+AGG 0.520254 3_4:-49273555 None:intergenic
ACCGTCATCTCCGGAGGAGA+CGG 0.520276 3_4:-49273648 None:intergenic
GAAAGTGAGAAGGATGAAGA+TGG 0.520598 3_4:-49273130 None:intergenic
TATGCCTCTAGAAGAGGAAG+TGG 0.520609 3_4:+49278503 Msa0504550:CDS
AATGGTAACATCTGTTTGGA+TGG 0.522424 3_4:-49277367 None:intergenic
AAGGTTAACAAGGTTGTTGG+AGG 0.523476 3_4:+49274390 Msa0504550:CDS
CAAAACCAAATCTGTGGTGA+CGG 0.525559 3_4:-49277509 None:intergenic
TTTATATTCAAACGAAGTGA+AGG 0.525694 3_4:+49279177 Msa0504550:three_prime_UTR
GCCGTCTCCTCCGGAGATGA+CGG 0.528753 3_4:+49273647 Msa0504550:CDS
GTTCGATGAAAATTCAAGAA+GGG 0.533471 3_4:+49274015 Msa0504550:CDS
TTTGGATTTCTGAAATCAGA+AGG 0.534039 3_4:-49275801 None:intergenic
GCTAGATCCTCTTCCTACTC+AGG 0.534790 3_4:+49277667 Msa0504550:CDS
ACCGGTTTCCAACTCTCTCA+TGG 0.535576 3_4:+49273676 Msa0504550:CDS
GAAGGAGTAGCAGATGTCAC+AGG 0.536186 3_4:-49274523 None:intergenic
AATTTCCATACTCACATGGT+AGG 0.537595 3_4:+49278154 Msa0504550:CDS
TTATGGTGGGAAGATTTGGT+TGG 0.537707 3_4:+49274414 Msa0504550:CDS
GCTTCAAGGATTCTTTCCTC+GGG 0.538993 3_4:-49278270 None:intergenic
AAGTGAGTGTGTTTGGGTAT+GGG 0.539932 3_4:-49273175 None:intergenic
TGTTATTGGAAATGGGAGTG+AGG 0.540969 3_4:+49274216 Msa0504550:CDS
CTAGAAGAGGAAGTGGAAGA+TGG 0.541163 3_4:+49278510 Msa0504550:CDS
GAAGATGGTGAAGAGAAGGA+TGG 0.542180 3_4:-49273115 None:intergenic
TATGTAATATTGAACCGGAC+CGG 0.543055 3_4:+49273978 Msa0504550:CDS
CTTGTTGATGATGAAGAAGA+AGG 0.544695 3_4:-49275903 None:intergenic
AATGTCACGATGTGCTTAGG+AGG 0.549065 3_4:+49278004 Msa0504550:CDS
GGTGGCGCGTGAGCATGAGC+AGG 0.550220 3_4:-49273531 None:intergenic
ATCTCCGGAGGAGACGGCGG+CGG 0.551091 3_4:-49273642 None:intergenic
AAAACCAAATCTGTGGTGAC+GGG 0.552108 3_4:-49277508 None:intergenic
CGAACCGAACCGTTTCAAAC+CGG 0.553501 3_4:-49273997 None:intergenic
CGGAGATGACGGTGGCCCAC+CGG 0.556211 3_4:+49273658 Msa0504550:CDS
AAAGTAAAGCGGAGATAGCG+TGG 0.556221 3_4:-49273481 None:intergenic
GGTGGTGGGGAGACGGTCGA+GGG 0.558134 3_4:-49273612 None:intergenic
AATGGCTGCCATGAGAGAGT+TGG 0.562677 3_4:-49273684 None:intergenic
GAGAGGAAGAGAAAGTGAGA+AGG 0.563444 3_4:-49273140 None:intergenic
GGTTCGATGAAAATTCAAGA+AGG 0.563642 3_4:+49274014 Msa0504550:CDS
TTTATAGAGTTAGCTCAAAG+TGG 0.565828 3_4:+49274121 Msa0504550:CDS
ATGAGAGAGTTGGAAACCGG+TGG 0.567904 3_4:-49273674 None:intergenic
CGGTGAAAGAATCTAGAAGA+TGG 0.569218 3_4:-49273935 None:intergenic
ATTTCTGAAATCAGAAGGTG+TGG 0.569693 3_4:-49275796 None:intergenic
AAAAGTTTGGTGGCAAGATG+AGG 0.571818 3_4:+49277753 Msa0504550:CDS
GGCGGCGCGTAGAGTATTGG+AGG 0.572174 3_4:-49273510 None:intergenic
CTTATGATCACTTAGTTTCG+GGG 0.573967 3_4:-49277569 None:intergenic
ATTTCCATACTCACATGGTA+GGG 0.574024 3_4:+49278155 Msa0504550:CDS
GATGATGATGTTATTGATGA+TGG 0.574381 3_4:+49274349 Msa0504550:CDS
ATGGGAGTGAGGAGAAGATG+GGG 0.574724 3_4:+49274227 Msa0504550:CDS
GATGACTTGTGGTTAAGGAA+AGG 0.575003 3_4:-49277472 None:intergenic
AATCTAGAAGATGGTGGTGG+TGG 0.576163 3_4:-49273926 None:intergenic
TCACGTTAATTCTAGCTGGA+AGG 0.576437 3_4:-49278911 None:intergenic
GGAGGGGAGAGAAAGTAAAG+CGG 0.576511 3_4:-49273492 None:intergenic
TGTCAAATTGAATTATCACT+TGG 0.577909 3_4:+49278300 Msa0504550:CDS
GGCGCGTGAGCATGAGCAGG+CGG 0.578477 3_4:-49273528 None:intergenic
ATTATGACCTGAGTAGGAAG+AGG 0.578817 3_4:-49277674 None:intergenic
TTTGAATATGCCTCTAGAAG+AGG 0.586648 3_4:+49278497 Msa0504550:CDS
TCCAAGCTCCATTCCACGAG+GGG 0.587037 3_4:+49277254 Msa0504550:CDS
CTTGCCGGTGATGCCGACGC+CGG 0.590743 3_4:+49273358 Msa0504550:exon
AGGGAATTGGATTAGAACAG+TGG 0.591231 3_4:-49277315 None:intergenic
ATTTAATTTGCAGCTTAATG+GGG 0.592243 3_4:+49275745 Msa0504550:intron
AGGGGAGTAAGGGAAGGTGG+TGG 0.593014 3_4:-49273549 None:intergenic
GACAATGAAACATAACAAAG+AGG 0.596834 3_4:+49278455 Msa0504550:CDS
GGGGTTGAGATTTGATGAAG+TGG 0.596851 3_4:+49274246 Msa0504550:CDS
GCTGATAATTATGTGAATGT+AGG 0.597746 3_4:+49275879 Msa0504550:CDS
GGTTGTTGGAGGTTTATGGT+GGG 0.597977 3_4:+49274401 Msa0504550:CDS
TTTCTTGGGCCAGATAGAGT+CGG 0.600021 3_4:+49277868 Msa0504550:CDS
TCAAGAAACACAACCGAACG+TGG 0.601412 3_4:-49278069 None:intergenic
TAGAGGATTAGGTTTGGCAA+AGG 0.604926 3_4:+49275962 Msa0504550:CDS
ATCGAAATTATGACCTGAGT+AGG 0.605554 3_4:-49277680 None:intergenic
TCTTCCACTTCCTCTTCTAG+AGG 0.607651 3_4:-49278507 None:intergenic
CGAACCGTTTCAAACCGGTC+CGG 0.608717 3_4:-49273992 None:intergenic
AGGGCACGGAAGTGGAGACG+AGG 0.609012 3_4:-49273569 None:intergenic
TAAAGGACATAGATGACTTG+TGG 0.609164 3_4:-49277483 None:intergenic
GGGCACGGAAGTGGAGACGA+GGG 0.611222 3_4:-49273568 None:intergenic
TTGTTGTTTCAAGGTTAACA+AGG 0.611538 3_4:+49274380 Msa0504550:CDS
CAAATGTTAGAGCCGACACA+TGG 0.611870 3_4:+49277839 Msa0504550:CDS
TACCGAATCGAAACCCCTCG+TGG 0.612399 3_4:-49277267 None:intergenic
GGAGAGAAGTTGTTTGAGGG+TGG 0.614742 3_4:-49273460 None:intergenic
GCCAACTTTGAACACAGAAG+AGG 0.616374 3_4:-49278211 None:intergenic
CAAACAATGCTTAATCTCAG+TGG 0.616985 3_4:+49277936 Msa0504550:CDS
TTTGGGAACGACATATACAT+CGG 0.618488 3_4:+49277528 Msa0504550:CDS
ACGGACTATACTCTAAATCC+AGG 0.619287 3_4:+49274551 Msa0504550:CDS
GTCATCTCCGGAGGAGACGG+CGG 0.619596 3_4:-49273645 None:intergenic
TGGGCCACCGTCATCTCCGG+AGG 0.622580 3_4:-49273654 None:intergenic
AGCTATCTGGATGACGACGT+TGG 0.622926 3_4:-49273724 None:intergenic
TGAGAGAGTTGGAAACCGGT+GGG 0.623257 3_4:-49273673 None:intergenic
GGGTTGAGATTTGATGAAGT+GGG 0.623856 3_4:+49274247 Msa0504550:CDS
ACTGCTTCTAAAGATATCCT+CGG 0.624424 3_4:-49278331 None:intergenic
CGACAGAGAGTTCTAGGGCA+CGG 0.628714 3_4:-49273583 None:intergenic
TCTGCTACTCCTTCTATGGA+CGG 0.628746 3_4:+49274532 Msa0504550:CDS
CGTGCCCTAGAACTCTCTGT+CGG 0.630862 3_4:+49273584 Msa0504550:CDS
GTGGCTACGTCTACGCGCTA+CGG 0.630979 3_4:-49273441 None:intergenic
AACATAACAAAGAGGCGTCA+CGG 0.631267 3_4:+49278463 Msa0504550:CDS
AAGAAAAGAAAACCATGTGT+CGG 0.632597 3_4:-49277851 None:intergenic
CTAAGATCTTCGGATTGCAG+AGG 0.640028 3_4:+49277152 Msa0504550:CDS
TGTGCTGGAAATTGATTACG+AGG 0.645493 3_4:+49278701 Msa0504550:CDS
CGTTCCCAAAACCAAATCTG+TGG 0.646306 3_4:-49277515 None:intergenic
TAGTTCAAAATCATGAAACA+TGG 0.647692 3_4:+49278553 Msa0504550:CDS
ATATAAAATATTCATAAGTG+AGG 0.648047 3_4:-49279161 None:intergenic
GCGGCGCGTAGAGTATTGGA+GGG 0.649141 3_4:-49273509 None:intergenic
GACTCCGACAGAGAGTTCTA+GGG 0.649350 3_4:-49273588 None:intergenic
GGCACGGAAGTGGAGACGAG+GGG 0.652636 3_4:-49273567 None:intergenic
TTCCAAGCTCCATTCCACGA+GGG 0.653377 3_4:+49277253 Msa0504550:CDS
TCTCGGAAACAGCTTTGTCG+AGG 0.654210 3_4:+49278797 Msa0504550:CDS
ATATTTCCCAAACATTAACA+GGG 0.659404 3_4:+49277230 Msa0504550:CDS
ACACTTTGTAGATCAGGCGA+CGG 0.669934 3_4:+49277802 Msa0504550:CDS
GGAACCAAAGATATTTCCCG+AGG 0.675037 3_4:+49278254 Msa0504550:CDS
ATCACTTGGACATACTTCCG+AGG 0.675238 3_4:+49278314 Msa0504550:CDS
TCAGGCGACGGAAAGCGCAG+TGG 0.676230 3_4:+49277814 Msa0504550:CDS
GCTTAGGAGGAAAACAGTCG+TGG 0.679956 3_4:+49278017 Msa0504550:CDS
GTCTCCTCCGGAGATGACGG+TGG 0.685017 3_4:+49273650 Msa0504550:CDS
TGAAAGAATCTAGAAGATGG+TGG 0.685445 3_4:-49273932 None:intergenic
GGTAAATTTCCATACTCACA+TGG 0.692604 3_4:+49278150 Msa0504550:CDS
AAGAATCTAGAAGATGGTGG+TGG 0.695136 3_4:-49273929 None:intergenic
GTTCCAAGCTCCATTCCACG+AGG 0.732442 3_4:+49277252 Msa0504550:CDS
CGGCGCGTAGAGTATTGGAG+GGG 0.743314 3_4:-49273508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATAAATAATTGAA+GGG - chr3_4:49273258-49273277 None:intergenic 10.0%
!! TAAAAATGATAAATAATTGA+AGG - chr3_4:49273259-49273278 None:intergenic 10.0%
!! ACTATATAGTATATATTATA+TGG - chr3_4:49274719-49274738 None:intergenic 10.0%
!!! TATGTTTTTTTTACTTTTAT+TGG + chr3_4:49275659-49275678 Msa0504550:intron 10.0%
!!! ATGTTTTTTTTACTTTTATT+GGG + chr3_4:49275660-49275679 Msa0504550:intron 10.0%
!! ATTATAATATGAGTTAAAAA+AGG + chr3_4:49279203-49279222 Msa0504550:three_prime_UTR 10.0%
!! TCAATATTACATAAAAAAAC+CGG - chr3_4:49273971-49273990 None:intergenic 15.0%
!!! TTTTTTATGTAATATTGAAC+CGG + chr3_4:49273973-49273992 Msa0504550:CDS 15.0%
!!! TTAAGAGCATAATTTAATAA+TGG + chr3_4:49275104-49275123 Msa0504550:intron 15.0%
!! AAAATACTGAATATGAAATT+CGG + chr3_4:49275478-49275497 Msa0504550:intron 15.0%
!! CAATATATATAGATCATAAT+AGG - chr3_4:49275610-49275629 None:intergenic 15.0%
!!! ATACTAAATAGGAAATATTT+TGG - chr3_4:49276411-49276430 None:intergenic 15.0%
!! TCATTGTTAAATAAATAGTA+CGG - chr3_4:49277085-49277104 None:intergenic 15.0%
!! CAAAAAGAAAAAAAAATCAT+GGG - chr3_4:49279041-49279060 None:intergenic 15.0%
!! ACAAAAAGAAAAAAAAATCA+TGG - chr3_4:49279042-49279061 None:intergenic 15.0%
!!! ATGATTTTTTTTTCTTTTTG+TGG + chr3_4:49279041-49279060 Msa0504550:three_prime_UTR 15.0%
!! ATATAAAATATTCATAAGTG+AGG - chr3_4:49279164-49279183 None:intergenic 15.0%
!!! GAGTTTTTTTTTTTTTAGTG+AGG - chr3_4:49273285-49273304 None:intergenic 20.0%
!!! AATTTTATATATATGCTTGC+CGG + chr3_4:49273343-49273362 Msa0504550:five_prime_UTR 20.0%
!!! GAAATTTTTGAGTTTGTTAT+TGG + chr3_4:49274202-49274221 Msa0504550:CDS 20.0%
!!! ATGTTTATACTAAGTTTTTG+AGG + chr3_4:49274458-49274477 Msa0504550:CDS 20.0%
!! TATGACAAAAAAAGAAACAT+AGG - chr3_4:49274640-49274659 None:intergenic 20.0%
!!! TATGTTTCTTTTTTTGTCAT+AGG + chr3_4:49274639-49274658 Msa0504550:intron 20.0%
!!! ATGTTTCTTTTTTTGTCATA+GGG + chr3_4:49274640-49274659 Msa0504550:intron 20.0%
!!! AAAGAAGTGTTATATGATAT+TGG + chr3_4:49274783-49274802 Msa0504550:intron 20.0%
!!! TTTGTTCTAAATTATTCAGA+TGG + chr3_4:49274926-49274945 Msa0504550:intron 20.0%
!! TCAAAATATGAATTGAAATC+TGG - chr3_4:49275440-49275459 None:intergenic 20.0%
!! TATGATCTATATATATTGCT+TGG + chr3_4:49275612-49275631 Msa0504550:intron 20.0%
!! TGCAAATTAAATAATGAACA+TGG - chr3_4:49275737-49275756 None:intergenic 20.0%
!!! TTATTTAATTTGCAGCTTAA+TGG + chr3_4:49275743-49275762 Msa0504550:intron 20.0%
!!! TATTTAATTTGCAGCTTAAT+GGG + chr3_4:49275744-49275763 Msa0504550:intron 20.0%
!! GAAAAATGAAACATAATGTT+AGG - chr3_4:49276007-49276026 None:intergenic 20.0%
!!! TCTGACTAAATTATTTTAGT+GGG - chr3_4:49276102-49276121 None:intergenic 20.0%
!!! GTTTTTACTTTTACCATTTT+AGG - chr3_4:49276149-49276168 None:intergenic 20.0%
!! TATCATGCATAATACTAAAT+AGG - chr3_4:49276422-49276441 None:intergenic 20.0%
!!! ATGCATGATATATATACTTT+TGG + chr3_4:49276432-49276451 Msa0504550:intron 20.0%
!!! TTTTCCAATATTAATCTCAA+AGG - chr3_4:49276625-49276644 None:intergenic 20.0%
!! ATAATATGAGTTAAAAAAGG+AGG + chr3_4:49279206-49279225 Msa0504550:three_prime_UTR 20.0%
!!! AATTGAAGGGTTTTTTGTTT+TGG - chr3_4:49273245-49273264 None:intergenic 25.0%
! ATATTACATAAAAAAACCGG+AGG - chr3_4:49273968-49273987 None:intergenic 25.0%
!!! CTCTATAAACCTTTTTAAAG+CGG - chr3_4:49274110-49274129 None:intergenic 25.0%
!!! TTTGAGTTTGTTATTGGAAA+TGG + chr3_4:49274208-49274227 Msa0504550:CDS 25.0%
!!! TTGAGTTTGTTATTGGAAAT+GGG + chr3_4:49274209-49274228 Msa0504550:CDS 25.0%
!!! CCAAATCTTTTTCAACATTA+GGG - chr3_4:49274489-49274508 None:intergenic 25.0%
!!! TCCAAATCTTTTTCAACATT+AGG - chr3_4:49274490-49274509 None:intergenic 25.0%
! AATAATGGTCATGATTCAAT+TGG + chr3_4:49275119-49275138 Msa0504550:intron 25.0%
! ATTATGAAACATTGCTCTAA+TGG + chr3_4:49275220-49275239 Msa0504550:intron 25.0%
! TCATAACACCAAAAAAGAAT+AGG - chr3_4:49275366-49275385 None:intergenic 25.0%
! AATAGGCTATAGAATTTGAT+AGG - chr3_4:49275593-49275612 None:intergenic 25.0%
!! GCTTGGAATATATTTACTTT+TGG + chr3_4:49275629-49275648 Msa0504550:intron 25.0%
!!! ATTTAATTTGCAGCTTAATG+GGG + chr3_4:49275745-49275764 Msa0504550:intron 25.0%
!!! CTCTGACTAAATTATTTTAG+TGG - chr3_4:49276103-49276122 None:intergenic 25.0%
! CACTAAAATAATTTAGTCAG+AGG + chr3_4:49276101-49276120 Msa0504550:intron 25.0%
!!! TAGGAAATATTTTGGCTTTA+TGG - chr3_4:49276403-49276422 None:intergenic 25.0%
!!! GCTATTTTCATAAGATATCT+TGG + chr3_4:49276471-49276490 Msa0504550:intron 25.0%
!!! ACTTCCTTTGAGATTAATAT+TGG + chr3_4:49276618-49276637 Msa0504550:intron 25.0%
! CAAATTGAAACAATGAAGTA+TGG - chr3_4:49277059-49277078 None:intergenic 25.0%
! TACTTCATTGTTTCAATTTG+TGG + chr3_4:49277059-49277078 Msa0504550:intron 25.0%
! AATATTTCCCAAACATTAAC+AGG + chr3_4:49277229-49277248 Msa0504550:CDS 25.0%
! ATATTTCCCAAACATTAACA+GGG + chr3_4:49277230-49277249 Msa0504550:CDS 25.0%
!!! ACATCGAATTTTGAAACTTT+CGG - chr3_4:49277445-49277464 None:intergenic 25.0%
! TTCTTATGATCACTTAGTTT+CGG - chr3_4:49277574-49277593 None:intergenic 25.0%
! TTTCGATGGAAAATTTGAAA+TGG + chr3_4:49277696-49277715 Msa0504550:CDS 25.0%
! AACTTCTTATCGAAAAAGTT+TGG + chr3_4:49277740-49277759 Msa0504550:CDS 25.0%
! TGTCAAATTGAATTATCACT+TGG + chr3_4:49278300-49278319 Msa0504550:CDS 25.0%
! TAGTTCAAAATCATGAAACA+TGG + chr3_4:49278553-49278572 Msa0504550:CDS 25.0%
! GCAAGTAAATCAAAATTGAA+TGG - chr3_4:49278624-49278643 None:intergenic 25.0%
! AAACAATTTCAAACACCATT+TGG + chr3_4:49278669-49278688 Msa0504550:CDS 25.0%
! AGCTGAATATGTAATGAAAT+TGG + chr3_4:49278842-49278861 Msa0504550:CDS 25.0%
!!! TAAATGTGAAAGCATTTTTG+TGG + chr3_4:49278866-49278885 Msa0504550:CDS 25.0%
!! ATTTGTATAATGTAGCTTGT+AGG + chr3_4:49278972-49278991 Msa0504550:three_prime_UTR 25.0%
!! TTTGTATAATGTAGCTTGTA+GGG + chr3_4:49278973-49278992 Msa0504550:three_prime_UTR 25.0%
!!! TTGGTAGTTATAGCATTTTA+AGG + chr3_4:49279006-49279025 Msa0504550:three_prime_UTR 25.0%
! TTTATATTCAAACGAAGTGA+AGG + chr3_4:49279177-49279196 Msa0504550:three_prime_UTR 25.0%
ATGGGAAAAAATTTAGTGAG+AGG - chr3_4:49273160-49273179 None:intergenic 30.0%
! TTGATGATCCTATAGTTAGT+AGG + chr3_4:49273843-49273862 Msa0504550:CDS 30.0%
TGATGATCCTATAGTTAGTA+GGG + chr3_4:49273844-49273863 Msa0504550:CDS 30.0%
GTTCGATGAAAATTCAAGAA+GGG + chr3_4:49274015-49274034 Msa0504550:CDS 30.0%
! TAAGAGAAATCCTCTTTTGA+TGG + chr3_4:49274069-49274088 Msa0504550:CDS 30.0%
! AAGAGAAATCCTCTTTTGAT+GGG + chr3_4:49274070-49274089 Msa0504550:CDS 30.0%
!! ATGCAAAAACCGCTTTAAAA+AGG + chr3_4:49274098-49274117 Msa0504550:CDS 30.0%
TTTATAGAGTTAGCTCAAAG+TGG + chr3_4:49274121-49274140 Msa0504550:CDS 30.0%
! TTTTTACCTAATGAGCTTGA+TGG + chr3_4:49274154-49274173 Msa0504550:CDS 30.0%
! TTTTACCTAATGAGCTTGAT+GGG + chr3_4:49274155-49274174 Msa0504550:CDS 30.0%
GTTGAACAAAATTTACATGC+TGG + chr3_4:49274277-49274296 Msa0504550:CDS 30.0%
! GATGATGATGTTATTGATGA+TGG + chr3_4:49274349-49274368 Msa0504550:CDS 30.0%
!! TTGTTGTTTCAAGGTTAACA+AGG + chr3_4:49274380-49274399 Msa0504550:CDS 30.0%
CCCTAATGTTGAAAAAGATT+TGG + chr3_4:49274486-49274505 Msa0504550:CDS 30.0%
AGAAAAAAGAGAAACATACC+TGG - chr3_4:49274572-49274591 None:intergenic 30.0%
! TTCCTTTTCTGTTTCCTTAT+TGG + chr3_4:49274592-49274611 Msa0504550:intron 30.0%
AACCAATAAGGAAACAGAAA+AGG - chr3_4:49274597-49274616 None:intergenic 30.0%
TGACATGTCAATATGATCAT+TGG + chr3_4:49274856-49274875 Msa0504550:intron 30.0%
!!! CTTGTCTTTAACTTGTTTTG+TGG + chr3_4:49274896-49274915 Msa0504550:intron 30.0%
!!! TATTCAGATGGTTTTGTCTT+CGG + chr3_4:49274938-49274957 Msa0504550:intron 30.0%
TTAGAGTGATAAAGAAGAGT+TGG - chr3_4:49274971-49274990 None:intergenic 30.0%
TTGAATTATAATCTGACTCC+TGG + chr3_4:49275050-49275069 Msa0504550:intron 30.0%
AAAAGCTTATAGAAAGTTCC+AGG - chr3_4:49275071-49275090 None:intergenic 30.0%
GCAGGTAGAAATAACATTAA+TGG - chr3_4:49275302-49275321 None:intergenic 30.0%
AACACCAAAAAAGAATAGGT+GGG - chr3_4:49275362-49275381 None:intergenic 30.0%
TAACACCAAAAAAGAATAGG+TGG - chr3_4:49275363-49275382 None:intergenic 30.0%
TACACGAAATGAACTACATT+TGG - chr3_4:49275528-49275547 None:intergenic 30.0%
GATAGGTCAAAATTGAATCT+AGG - chr3_4:49275576-49275595 None:intergenic 30.0%
ATGCTTAAAGTCTAACTCTT+CGG + chr3_4:49275690-49275709 Msa0504550:intron 30.0%
!! TTTGGATTTCTGAAATCAGA+AGG - chr3_4:49275804-49275823 None:intergenic 30.0%
!! AGAGTTAAAGATGATGGATT+TGG - chr3_4:49275822-49275841 None:intergenic 30.0%
TCACAAAGAGTTAAAGATGA+TGG - chr3_4:49275828-49275847 None:intergenic 30.0%
GCTGATAATTATGTGAATGT+AGG + chr3_4:49275879-49275898 Msa0504550:CDS 30.0%
! ACATTAACCTTTTGTAACCA+AGG - chr3_4:49275933-49275952 None:intergenic 30.0%
TTGGTTACAAAAGGTTAATG+TGG + chr3_4:49275932-49275951 Msa0504550:CDS 30.0%
CTTACTTAGGAAAATGCATA+TGG - chr3_4:49276171-49276190 None:intergenic 30.0%
! TGCATTTTCCTAAGTAAGAA+TGG + chr3_4:49276173-49276192 Msa0504550:intron 30.0%
!!! CATATTTTTGGTATAGGCAT+AGG - chr3_4:49276232-49276251 None:intergenic 30.0%
!!! AGTAGGCATATTTTTGGTAT+AGG - chr3_4:49276238-49276257 None:intergenic 30.0%
! TAGTTCAGTAGGCATATTTT+TGG - chr3_4:49276244-49276263 None:intergenic 30.0%
! GATGTTTCTGAAAGTTGATT+AGG + chr3_4:49276271-49276290 Msa0504550:intron 30.0%
TTATATGTCCATGTGTACTT+TGG + chr3_4:49276306-49276325 Msa0504550:intron 30.0%
TGCATTTGTATATTACCTGT+AGG - chr3_4:49276333-49276352 None:intergenic 30.0%
AATGCAAATAATGCAATCAG+TGG + chr3_4:49276347-49276366 Msa0504550:intron 30.0%
AAGATATCTTGGAGAACTTA+TGG + chr3_4:49276482-49276501 Msa0504550:intron 30.0%
GACAACTAGAAAGCAATTAT+GGG - chr3_4:49276569-49276588 None:intergenic 30.0%
TGACAACTAGAAAGCAATTA+TGG - chr3_4:49276570-49276589 None:intergenic 30.0%
TTAAAATATCTTGTGTAGGC+AGG - chr3_4:49276596-49276615 None:intergenic 30.0%
! TGCCTACACAAGATATTTTA+AGG + chr3_4:49276595-49276614 Msa0504550:intron 30.0%
GTCCTTAAAATATCTTGTGT+AGG - chr3_4:49276600-49276619 None:intergenic 30.0%
TACTTTCTCTTGTCAAAAGT+TGG + chr3_4:49276747-49276766 Msa0504550:intron 30.0%
ACTTTCTCTTGTCAAAAGTT+GGG + chr3_4:49276748-49276767 Msa0504550:intron 30.0%
TAGATCCAATTTACCAAAGT+CGG - chr3_4:49276858-49276877 None:intergenic 30.0%
AAACAAAGAGAGAAAACACA+CGG - chr3_4:49276981-49277000 None:intergenic 30.0%
TGACAACAATGTTAATCAAG+AGG - chr3_4:49277013-49277032 None:intergenic 30.0%
CAAACTTGTGTTATCTTCAT+TGG - chr3_4:49277128-49277147 None:intergenic 30.0%
AGTTTGAATGCTAAGATCTT+CGG + chr3_4:49277142-49277161 Msa0504550:CDS 30.0%
!! GTTTGGGAAATATTGATTTC+AGG - chr3_4:49277223-49277242 None:intergenic 30.0%
! TAGAACAGTGGATTTCATTA+AGG - chr3_4:49277306-49277325 None:intergenic 30.0%
TGTAACTCTTTAGACATGTA+GGG - chr3_4:49277337-49277356 None:intergenic 30.0%
TTGTAACTCTTTAGACATGT+AGG - chr3_4:49277338-49277357 None:intergenic 30.0%
TGAAAATGGTAACATCTGTT+TGG - chr3_4:49277374-49277393 None:intergenic 30.0%
GTATCAAAAGGTTGTGAAAA+TGG - chr3_4:49277388-49277407 None:intergenic 30.0%
! TACATGTTCAGCTTTATCTT+TGG - chr3_4:49277422-49277441 None:intergenic 30.0%
TCTTATGATCACTTAGTTTC+GGG - chr3_4:49277573-49277592 None:intergenic 30.0%
TTCTTATCGAAAAAGTTTGG+TGG + chr3_4:49277743-49277762 Msa0504550:CDS 30.0%
ATTATGACACTTTGTAGATC+AGG + chr3_4:49277796-49277815 Msa0504550:CDS 30.0%
AAGAAAAGAAAACCATGTGT+CGG - chr3_4:49277854-49277873 None:intergenic 30.0%
! ACACATGGTTTTCTTTTCTT+GGG + chr3_4:49277854-49277873 Msa0504550:CDS 30.0%
TTGTTACAAGCAATAAGAAC+AGG + chr3_4:49278129-49278148 Msa0504550:CDS 30.0%
!!! TTTGACATCTTTTAGCTTCA+AGG - chr3_4:49278287-49278306 None:intergenic 30.0%
GACAATGAAACATAACAAAG+AGG + chr3_4:49278455-49278474 Msa0504550:CDS 30.0%
AGCACAAAATTTGATCCAAA+TGG - chr3_4:49278687-49278706 None:intergenic 30.0%
! ATTTGGATCAAATTTTGTGC+TGG + chr3_4:49278686-49278705 Msa0504550:CDS 30.0%
CTTGTAGGGTATATATCATT+TGG + chr3_4:49278987-49279006 Msa0504550:three_prime_UTR 30.0%
TGTGAATCTGTGATTTCTTA+TGG + chr3_4:49279076-49279095 Msa0504550:three_prime_UTR 30.0%
TTCATTCCATCAGAATAATC+AGG - chr3_4:49279131-49279150 None:intergenic 30.0%
TAATGCAAGTGAGTGTGTTT+GGG - chr3_4:49273184-49273203 None:intergenic 35.0%
TTAATGCAAGTGAGTGTGTT+TGG - chr3_4:49273185-49273204 None:intergenic 35.0%
TGTAGTAAATGGAAGCTATC+TGG - chr3_4:49273740-49273759 None:intergenic 35.0%
GCTGCATTATCTGTAGTAAA+TGG - chr3_4:49273751-49273770 None:intergenic 35.0%
GCAAAAACCCTACTAACTAT+AGG - chr3_4:49273854-49273873 None:intergenic 35.0%
TGAAAGAATCTAGAAGATGG+TGG - chr3_4:49273935-49273954 None:intergenic 35.0%
TTACATAAAAAAACCGGAGG+AGG - chr3_4:49273965-49273984 None:intergenic 35.0%
TATGTAATATTGAACCGGAC+CGG + chr3_4:49273978-49273997 Msa0504550:CDS 35.0%
GGTTCGATGAAAATTCAAGA+AGG + chr3_4:49274014-49274033 Msa0504550:CDS 35.0%
TTAGCTCAAAGTGGAAAAGT+TGG + chr3_4:49274130-49274149 Msa0504550:CDS 35.0%
TTTAACCCATCAAGCTCATT+AGG - chr3_4:49274163-49274182 None:intergenic 35.0%
!!! CTGGTGTTGTTCTATGTTTT+GGG + chr3_4:49274296-49274315 Msa0504550:CDS 35.0%
!!! TGGTGTTGTTCTATGTTTTG+GGG + chr3_4:49274297-49274316 Msa0504550:CDS 35.0%
!! GTGTTGTGTTTGTTGTTTCA+AGG + chr3_4:49274371-49274390 Msa0504550:CDS 35.0%
TTCAAGGTTAACAAGGTTGT+TGG + chr3_4:49274387-49274406 Msa0504550:CDS 35.0%
!! TTCTGTTTCCTTATTGGTTC+TGG + chr3_4:49274598-49274617 Msa0504550:intron 35.0%
AGTACAAACCAGAACCAATA+AGG - chr3_4:49274609-49274628 None:intergenic 35.0%
TGGTTATTGTGCATAGAGAA+AGG + chr3_4:49275002-49275021 Msa0504550:intron 35.0%
TATTGTGCATAGAGAAAGGA+AGG + chr3_4:49275006-49275025 Msa0504550:intron 35.0%
!! GGTCATGATTCAATTGGTTT+TGG + chr3_4:49275125-49275144 Msa0504550:intron 35.0%
! TGCTGCAATGTTCTATTTTC+TGG + chr3_4:49275181-49275200 Msa0504550:intron 35.0%
! GCTGCAATGTTCTATTTTCT+GGG + chr3_4:49275182-49275201 Msa0504550:intron 35.0%
AGCATTTATCAAAAGACTGC+AGG - chr3_4:49275320-49275339 None:intergenic 35.0%
AAAAAAGAATAGGTGGGTCA+GGG - chr3_4:49275356-49275375 None:intergenic 35.0%
!! ATTTCTGAAATCAGAAGGTG+TGG - chr3_4:49275799-49275818 None:intergenic 35.0%
!! CTTGTTGATGATGAAGAAGA+AGG - chr3_4:49275906-49275925 None:intergenic 35.0%
AAGCTTACCTTGGTTACAAA+AGG + chr3_4:49275923-49275942 Msa0504550:CDS 35.0%
GTTAATGTGGATTCAGATAG+AGG + chr3_4:49275945-49275964 Msa0504550:CDS 35.0%
TTCAGATAGAGGATTAGGTT+TGG + chr3_4:49275956-49275975 Msa0504550:CDS 35.0%
ATAATGCTTCTGGCCTAAAA+TGG + chr3_4:49276133-49276152 Msa0504550:intron 35.0%
! TGCTACTTCCATTCTTACTT+AGG - chr3_4:49276184-49276203 None:intergenic 35.0%
ATATGCCTACTGAACTAATC+TGG + chr3_4:49276247-49276266 Msa0504550:intron 35.0%
! GAGGATTTTCTGATTATGGT+CGG - chr3_4:49276907-49276926 None:intergenic 35.0%
! TCTGGAGGATTTTCTGATTA+TGG - chr3_4:49276911-49276930 None:intergenic 35.0%
TTGGAACCCTGTTAATGTTT+GGG - chr3_4:49277239-49277258 None:intergenic 35.0%
TCTTTAGACATGTAGGGAAT+TGG - chr3_4:49277331-49277350 None:intergenic 35.0%
AACATCTGTTTGGATGGAAA+TGG - chr3_4:49277364-49277383 None:intergenic 35.0%
AATGGTAACATCTGTTTGGA+TGG - chr3_4:49277370-49277389 None:intergenic 35.0%
GCACTAAGAGTAGTATCAAA+AGG - chr3_4:49277400-49277419 None:intergenic 35.0%
! ACATAGATGACTTGTGGTTA+AGG - chr3_4:49277480-49277499 None:intergenic 35.0%
TAAAGGACATAGATGACTTG+TGG - chr3_4:49277486-49277505 None:intergenic 35.0%
TTTGGGAACGACATATACAT+CGG + chr3_4:49277528-49277547 Msa0504550:CDS 35.0%
CTTATGATCACTTAGTTTCG+GGG - chr3_4:49277572-49277591 None:intergenic 35.0%
ATCGAAATTATGACCTGAGT+AGG - chr3_4:49277683-49277702 None:intergenic 35.0%
TACTCAGGTCATAATTTCGA+TGG + chr3_4:49277682-49277701 Msa0504550:CDS 35.0%
! GACACATGGTTTTCTTTTCT+TGG + chr3_4:49277853-49277872 Msa0504550:CDS 35.0%
! TTTCTTTTTCCGACTCTATC+TGG - chr3_4:49277880-49277899 None:intergenic 35.0%
GTACTTGCAGAAACTCTATT+TGG + chr3_4:49277910-49277929 Msa0504550:CDS 35.0%
CAAACAATGCTTAATCTCAG+TGG + chr3_4:49277936-49277955 Msa0504550:CDS 35.0%
CATTCGAAAATCGAGTTCAA+TGG - chr3_4:49277988-49278007 None:intergenic 35.0%
GGTAAATTTCCATACTCACA+TGG + chr3_4:49278150-49278169 Msa0504550:CDS 35.0%
AATTTCCATACTCACATGGT+AGG + chr3_4:49278154-49278173 Msa0504550:CDS 35.0%
ATTTCCATACTCACATGGTA+GGG + chr3_4:49278155-49278174 Msa0504550:CDS 35.0%
!!! CGGCTTTTTTGATATGGAAA+AGG + chr3_4:49278233-49278252 Msa0504550:CDS 35.0%
! ACTGCTTCTAAAGATATCCT+CGG - chr3_4:49278334-49278353 None:intergenic 35.0%
AAGCAGTAGCAAAAATGTGA+GGG + chr3_4:49278347-49278366 Msa0504550:CDS 35.0%
! CTTGCTAGTTACTTTCTCAT+TGG - chr3_4:49278436-49278455 None:intergenic 35.0%
! TTTGAATATGCCTCTAGAAG+AGG + chr3_4:49278497-49278516 Msa0504550:CDS 35.0%
GATTTCCTTGCACAAATTGA+TGG + chr3_4:49278582-49278601 Msa0504550:CDS 35.0%
! CTTTTCCATCAATTTGTGCA+AGG - chr3_4:49278590-49278609 None:intergenic 35.0%
TGCACAAATTGATGGAAAAG+TGG + chr3_4:49278590-49278609 Msa0504550:CDS 35.0%
ATCAGACAAGAAAAAAGCAG+TGG + chr3_4:49278755-49278774 Msa0504550:CDS 35.0%
AGAAAAAAGCAGTGGAAGAT+TGG + chr3_4:49278763-49278782 Msa0504550:CDS 35.0%
GATTGGATTGAACATGTTCT+CGG + chr3_4:49278780-49278799 Msa0504550:CDS 35.0%
TAGTTCACGTTAATTCTAGC+TGG - chr3_4:49278918-49278937 None:intergenic 35.0%
ATCAGAATAATCAGGAGAAC+TGG - chr3_4:49279123-49279142 None:intergenic 35.0%
AGTTCTCCTGATTATTCTGA+TGG + chr3_4:49279122-49279141 Msa0504550:three_prime_UTR 35.0%
GAAAGTGAGAAGGATGAAGA+TGG - chr3_4:49273133-49273152 None:intergenic 40.0%
AAGTGAGTGTGTTTGGGTAT+GGG - chr3_4:49273178-49273197 None:intergenic 40.0%
CTGCTTCGTCAGTTAAACAT+TGG - chr3_4:49273397-49273416 None:intergenic 40.0%
!! GTTTGCTTGAGAGCGTTTAA+TGG - chr3_4:49273705-49273724 None:intergenic 40.0%
AAAACGACGCAGTTTGATTC+TGG - chr3_4:49273787-49273806 None:intergenic 40.0%
! AAGAATCTAGAAGATGGTGG+TGG - chr3_4:49273932-49273951 None:intergenic 40.0%
CGGTGAAAGAATCTAGAAGA+TGG - chr3_4:49273938-49273957 None:intergenic 40.0%
!!! AGGGTTGTTGATGTTTTAGC+TGG + chr3_4:49274034-49274053 Msa0504550:CDS 40.0%
!!! GGGTTGTTGATGTTTTAGCT+GGG + chr3_4:49274035-49274054 Msa0504550:CDS 40.0%
!!! ATGTTTTAGCTGGGAAGAGT+GGG + chr3_4:49274044-49274063 Msa0504550:CDS 40.0%
GCATAAACACCCATCAAAAG+AGG - chr3_4:49274082-49274101 None:intergenic 40.0%
TGTTATTGGAAATGGGAGTG+AGG + chr3_4:49274216-49274235 Msa0504550:CDS 40.0%
GGGTTGAGATTTGATGAAGT+GGG + chr3_4:49274247-49274266 Msa0504550:CDS 40.0%
!!! GCTGGTGTTGTTCTATGTTT+TGG + chr3_4:49274295-49274314 Msa0504550:CDS 40.0%
!!! TCTATGTTTTGGGGAGATTG+AGG + chr3_4:49274306-49274325 Msa0504550:CDS 40.0%
AAGGTTAACAAGGTTGTTGG+AGG + chr3_4:49274390-49274409 Msa0504550:CDS 40.0%
ACAAGGTTGTTGGAGGTTTA+TGG + chr3_4:49274397-49274416 Msa0504550:CDS 40.0%
! AGGTTTATGGTGGGAAGATT+TGG + chr3_4:49274410-49274429 Msa0504550:CDS 40.0%
! TTATGGTGGGAAGATTTGGT+TGG + chr3_4:49274414-49274433 Msa0504550:CDS 40.0%
! ACGGACTATACTCTAAATCC+AGG + chr3_4:49274551-49274570 Msa0504550:CDS 40.0%
!! TCACTCTAAAGCTGTTTGCT+TGG + chr3_4:49274982-49275001 Msa0504550:intron 40.0%
! AACATTGCTCTAATGGATGC+TGG + chr3_4:49275227-49275246 Msa0504550:intron 40.0%
AAAAAGAATAGGTGGGTCAG+GGG - chr3_4:49275355-49275374 None:intergenic 40.0%
CAAAAAAGAATAGGTGGGTC+AGG - chr3_4:49275357-49275376 None:intergenic 40.0%
!!! CTGACCCACCTATTCTTTTT+TGG + chr3_4:49275355-49275374 Msa0504550:intron 40.0%
ATCTGGACTGTGATCTTGAT+CGG - chr3_4:49275423-49275442 None:intergenic 40.0%
! ATGGGGTCTTTTGTTCCATT+TGG + chr3_4:49275762-49275781 Msa0504550:CDS 40.0%
CATCATCAACAAGCTTACCT+TGG + chr3_4:49275913-49275932 Msa0504550:CDS 40.0%
GTGGATTCAGATAGAGGATT+AGG + chr3_4:49275951-49275970 Msa0504550:CDS 40.0%
TAGAGGATTAGGTTTGGCAA+AGG + chr3_4:49275962-49275981 Msa0504550:CDS 40.0%
GTAAGCTGCAATAATGCTTC+TGG + chr3_4:49276123-49276142 Msa0504550:intron 40.0%
! CATCACCAGATTAGTTCAGT+AGG - chr3_4:49276255-49276274 None:intergenic 40.0%
ATAATGCAATCAGTGGACCT+TGG + chr3_4:49276354-49276373 Msa0504550:intron 40.0%
CTAGAAAGCAATTATGGGAG+TGG - chr3_4:49276564-49276583 None:intergenic 40.0%
TCTTGTCAAAAGTTGGGATC+TGG + chr3_4:49276754-49276773 Msa0504550:intron 40.0%
TTTGACGTAGTCACGTGATT+TGG + chr3_4:49276803-49276822 Msa0504550:intron 40.0%
GTGTTCCGACTTTGGTAAAT+TGG + chr3_4:49276850-49276869 Msa0504550:intron 40.0%
AAATCCTCCAGACTAGTGAA+TGG + chr3_4:49276919-49276938 Msa0504550:intron 40.0%
CAATCAACCATTCACTAGTC+TGG - chr3_4:49276929-49276948 None:intergenic 40.0%
CTTGGAACCCTGTTAATGTT+TGG - chr3_4:49277240-49277259 None:intergenic 40.0%
! AGGGAATTGGATTAGAACAG+TGG - chr3_4:49277318-49277337 None:intergenic 40.0%
! GATGACTTGTGGTTAAGGAA+AGG - chr3_4:49277475-49277494 None:intergenic 40.0%
AAAACCAAATCTGTGGTGAC+GGG - chr3_4:49277511-49277530 None:intergenic 40.0%
CAAAACCAAATCTGTGGTGA+CGG - chr3_4:49277512-49277531 None:intergenic 40.0%
!!! GTCACCACAGATTTGGTTTT+GGG + chr3_4:49277511-49277530 Msa0504550:CDS 40.0%
AGGAAGAGGATCTAGCAATT+TGG - chr3_4:49277663-49277682 None:intergenic 40.0%
ATTATGACCTGAGTAGGAAG+AGG - chr3_4:49277677-49277696 None:intergenic 40.0%
! AAAAGTTTGGTGGCAAGATG+AGG + chr3_4:49277753-49277772 Msa0504550:CDS 40.0%
! CTCAGTGGATTTAAGCTCTA+AGG + chr3_4:49277951-49277970 Msa0504550:CDS 40.0%
! ACAGTCGTGGATTATATTGC+TGG + chr3_4:49278030-49278049 Msa0504550:CDS 40.0%
GTTGAGTAAAAAGCCACGTT+CGG + chr3_4:49278056-49278075 Msa0504550:CDS 40.0%
ATTTCCCTACCATGTGAGTA+TGG - chr3_4:49278162-49278181 None:intergenic 40.0%
ACCTCTTCTGTGTTCAAAGT+TGG + chr3_4:49278210-49278229 Msa0504550:CDS 40.0%
TCTTCTGTGTTCAAAGTTGG+CGG + chr3_4:49278213-49278232 Msa0504550:CDS 40.0%
!!! AGTTGGCGGCTTTTTTGATA+TGG + chr3_4:49278227-49278246 Msa0504550:CDS 40.0%
CTTTCCTCGGGAAATATCTT+TGG - chr3_4:49278261-49278280 None:intergenic 40.0%
AGCTTCAAGGATTCTTTCCT+CGG - chr3_4:49278274-49278293 None:intergenic 40.0%
GAAGCAGTAGCAAAAATGTG+AGG + chr3_4:49278346-49278365 Msa0504550:CDS 40.0%
GTGAGGGTTTCAAAGAGAAA+TGG + chr3_4:49278363-49278382 Msa0504550:CDS 40.0%
CTCATTGGAATCACTGCTTT+CGG - chr3_4:49278421-49278440 None:intergenic 40.0%
!! AACATAACAAAGAGGCGTCA+CGG + chr3_4:49278463-49278482 Msa0504550:CDS 40.0%
TGTGCTGGAAATTGATTACG+AGG + chr3_4:49278701-49278720 Msa0504550:CDS 40.0%
! TCACGTTAATTCTAGCTGGA+AGG - chr3_4:49278914-49278933 None:intergenic 40.0%
GAAGATGGTGAAGAGAAGGA+TGG - chr3_4:49273118-49273137 None:intergenic 45.0%
GGATGAAGATGGTGAAGAGA+AGG - chr3_4:49273122-49273141 None:intergenic 45.0%
GAGAGGAAGAGAAAGTGAGA+AGG - chr3_4:49273143-49273162 None:intergenic 45.0%
CAAGTGAGTGTGTTTGGGTA+TGG - chr3_4:49273179-49273198 None:intergenic 45.0%
CGTGGAGAGAAGTTGTTTGA+GGG - chr3_4:49273466-49273485 None:intergenic 45.0%
AAAGTAAAGCGGAGATAGCG+TGG - chr3_4:49273484-49273503 None:intergenic 45.0%
! AGTAGGGTTTTTGCAGAAGC+TGG + chr3_4:49273860-49273879 Msa0504550:CDS 45.0%
!! AATCTAGAAGATGGTGGTGG+TGG - chr3_4:49273929-49273948 None:intergenic 45.0%
AAAAAACCGGAGGAGGAGAA+CGG - chr3_4:49273958-49273977 None:intergenic 45.0%
!!! GATGTTTTAGCTGGGAAGAG+TGG + chr3_4:49274043-49274062 Msa0504550:CDS 45.0%
AAATGGGAGTGAGGAGAAGA+TGG + chr3_4:49274225-49274244 Msa0504550:CDS 45.0%
AATGGGAGTGAGGAGAAGAT+GGG + chr3_4:49274226-49274245 Msa0504550:CDS 45.0%
GGGGTTGAGATTTGATGAAG+TGG + chr3_4:49274246-49274265 Msa0504550:CDS 45.0%
AGGTTGTTGGAGGTTTATGG+TGG + chr3_4:49274400-49274419 Msa0504550:CDS 45.0%
GGTTGTTGGAGGTTTATGGT+GGG + chr3_4:49274401-49274420 Msa0504550:CDS 45.0%
GACATCTGCTACTCCTTCTA+TGG + chr3_4:49274528-49274547 Msa0504550:CDS 45.0%
TCTGCTACTCCTTCTATGGA+CGG + chr3_4:49274532-49274551 Msa0504550:CDS 45.0%
GAGTATAGTCCGTCCATAGA+AGG - chr3_4:49274544-49274563 None:intergenic 45.0%
! GGGTCTTTTGTTCCATTTGG+TGG + chr3_4:49275765-49275784 Msa0504550:CDS 45.0%
GTGGAAAAGAAGCCACCAAA+TGG - chr3_4:49275780-49275799 None:intergenic 45.0%
GGTATAGGCATAGGCATTCA+AGG - chr3_4:49276223-49276242 None:intergenic 45.0%
CTGTAGGACCAAAGTACACA+TGG - chr3_4:49276317-49276336 None:intergenic 45.0%
CATGTGTACTTTGGTCCTAC+AGG + chr3_4:49276315-49276334 Msa0504550:intron 45.0%
TTGGACCGTTGGATGAAGAT+CGG + chr3_4:49276822-49276841 Msa0504550:intron 45.0%
AGAGTCCGATCTTCATCCAA+CGG - chr3_4:49276830-49276849 None:intergenic 45.0%
! TCAACCATTCACTAGTCTGG+AGG - chr3_4:49276926-49276945 None:intergenic 45.0%
! AACACACGGCTCAATGGATT+TGG - chr3_4:49276967-49276986 None:intergenic 45.0%
AGAGAAAACACACGGCTCAA+TGG - chr3_4:49276973-49276992 None:intergenic 45.0%
CTAAGATCTTCGGATTGCAG+AGG + chr3_4:49277152-49277171 Msa0504550:CDS 45.0%
TCTTCGGATTGCAGAGGAAA+TGG + chr3_4:49277158-49277177 Msa0504550:CDS 45.0%
!! ATCTGTGGTGACGGGATTAA+AGG - chr3_4:49277503-49277522 None:intergenic 45.0%
TAATCCCGTCACCACAGATT+TGG + chr3_4:49277504-49277523 Msa0504550:CDS 45.0%
!! CGTCACCACAGATTTGGTTT+TGG + chr3_4:49277510-49277529 Msa0504550:CDS 45.0%
CGTTCCCAAAACCAAATCTG+TGG - chr3_4:49277518-49277537 None:intergenic 45.0%
! TCACTTAGTTTCGGGGTATC+TGG - chr3_4:49277565-49277584 None:intergenic 45.0%
! GAAGCATCTTCAGCACTTGT+CGG + chr3_4:49277591-49277610 Msa0504550:CDS 45.0%
ACACTTTGTAGATCAGGCGA+CGG + chr3_4:49277802-49277821 Msa0504550:CDS 45.0%
CAAATGTTAGAGCCGACACA+TGG + chr3_4:49277839-49277858 Msa0504550:CDS 45.0%
TTTCTTGGGCCAGATAGAGT+CGG + chr3_4:49277868-49277887 Msa0504550:CDS 45.0%
TCGAATGTCACGATGTGCTT+AGG + chr3_4:49278001-49278020 Msa0504550:CDS 45.0%
AATGTCACGATGTGCTTAGG+AGG + chr3_4:49278004-49278023 Msa0504550:CDS 45.0%
TCAAGAAACACAACCGAACG+TGG - chr3_4:49278072-49278091 None:intergenic 45.0%
GCCAACTTTGAACACAGAAG+AGG - chr3_4:49278214-49278233 None:intergenic 45.0%
GGAACCAAAGATATTTCCCG+AGG + chr3_4:49278254-49278273 Msa0504550:CDS 45.0%
GCTTCAAGGATTCTTTCCTC+GGG - chr3_4:49278273-49278292 None:intergenic 45.0%
ATCACTTGGACATACTTCCG+AGG + chr3_4:49278314-49278333 Msa0504550:CDS 45.0%
! TATGCCTCTAGAAGAGGAAG+TGG + chr3_4:49278503-49278522 Msa0504550:CDS 45.0%
TCTTCCACTTCCTCTTCTAG+AGG - chr3_4:49278510-49278529 None:intergenic 45.0%
CTAGAAGAGGAAGTGGAAGA+TGG + chr3_4:49278510-49278529 Msa0504550:CDS 45.0%
TTTGTGGAAGAGCAAGCTAC+AGG + chr3_4:49278882-49278901 Msa0504550:CDS 45.0%
GGAGAGAAGTTGTTTGAGGG+TGG - chr3_4:49273463-49273482 None:intergenic 50.0%
GCGTGGAGAGAAGTTGTTTG+AGG - chr3_4:49273467-49273486 None:intergenic 50.0%
GGAGGGGAGAGAAAGTAAAG+CGG - chr3_4:49273495-49273514 None:intergenic 50.0%
GACTCCGACAGAGAGTTCTA+GGG - chr3_4:49273591-49273610 None:intergenic 50.0%
AGACTCCGACAGAGAGTTCT+AGG - chr3_4:49273592-49273611 None:intergenic 50.0%
TGAGAGAGTTGGAAACCGGT+GGG - chr3_4:49273676-49273695 None:intergenic 50.0%
ATGAGAGAGTTGGAAACCGG+TGG - chr3_4:49273677-49273696 None:intergenic 50.0%
! ACCGGTTTCCAACTCTCTCA+TGG + chr3_4:49273676-49273695 Msa0504550:CDS 50.0%
GCCATGAGAGAGTTGGAAAC+CGG - chr3_4:49273680-49273699 None:intergenic 50.0%
AATGGCTGCCATGAGAGAGT+TGG - chr3_4:49273687-49273706 None:intergenic 50.0%
AGCTATCTGGATGACGACGT+TGG - chr3_4:49273727-49273746 None:intergenic 50.0%
!! TGAACCGGACCGGTTTGAAA+CGG + chr3_4:49273988-49274007 Msa0504550:CDS 50.0%
CGAACCGAACCGTTTCAAAC+CGG - chr3_4:49274000-49274019 None:intergenic 50.0%
ATGGGAGTGAGGAGAAGATG+GGG + chr3_4:49274227-49274246 Msa0504550:CDS 50.0%
! TGGTGGGAAGATTTGGTTGG+TGG + chr3_4:49274417-49274436 Msa0504550:CDS 50.0%
! GGTGGGAAGATTTGGTTGGT+GGG + chr3_4:49274418-49274437 Msa0504550:CDS 50.0%
!! ATTTGGTTGGTGGGTGTAGC+AGG + chr3_4:49274427-49274446 Msa0504550:CDS 50.0%
GAAGGAGTAGCAGATGTCAC+AGG - chr3_4:49274526-49274545 None:intergenic 50.0%
GGACTGTGATCTTGATCGGA+CGG - chr3_4:49275419-49275438 None:intergenic 50.0%
GTGGACCTTGGTTTACCTCT+AGG + chr3_4:49276366-49276385 Msa0504550:intron 50.0%
CACTGCCTAGAGGTAAACCA+AGG - chr3_4:49276374-49276393 None:intergenic 50.0%
CTTGGTTTACCTCTAGGCAG+TGG + chr3_4:49276372-49276391 Msa0504550:intron 50.0%
! AGTCACGTGATTTGGACCGT+TGG + chr3_4:49276811-49276830 Msa0504550:intron 50.0%
TTCCAAGCTCCATTCCACGA+GGG + chr3_4:49277253-49277272 Msa0504550:CDS 50.0%
AATCGAAACCCCTCGTGGAA+TGG - chr3_4:49277265-49277284 None:intergenic 50.0%
TTCCACGAGGGGTTTCGATT+CGG + chr3_4:49277265-49277284 Msa0504550:CDS 50.0%
GCTAGATCCTCTTCCTACTC+AGG + chr3_4:49277667-49277686 Msa0504550:CDS 50.0%
GCTTAGGAGGAAAACAGTCG+TGG + chr3_4:49278017-49278036 Msa0504550:CDS 50.0%
CAGAGATACTTGCAGCTGCT+TGG + chr3_4:49278730-49278749 Msa0504550:CDS 50.0%
! TCTCGGAAACAGCTTTGTCG+AGG + chr3_4:49278797-49278816 Msa0504550:CDS 50.0%
AGTGGAGACGAGGGGAGTAA+GGG - chr3_4:49273562-49273581 None:intergenic 55.0%
AAGTGGAGACGAGGGGAGTA+AGG - chr3_4:49273563-49273582 None:intergenic 55.0%
!! AGAGTTCTAGGGCACGGAAG+TGG - chr3_4:49273580-49273599 None:intergenic 55.0%
!! CGACAGAGAGTTCTAGGGCA+CGG - chr3_4:49273586-49273605 None:intergenic 55.0%
CGTGCCCTAGAACTCTCTGT+CGG + chr3_4:49273584-49273603 Msa0504550:CDS 55.0%
!!! TGGTTTTGGTGGTGGGGAGA+CGG - chr3_4:49273622-49273641 None:intergenic 55.0%
!! CTAGAAGATGGTGGTGGTGG+TGG - chr3_4:49273926-49273945 None:intergenic 55.0%
CTTTCACCGTTCTCCTCCTC+CGG + chr3_4:49273949-49273968 Msa0504550:CDS 55.0%
CGAACCGTTTCAAACCGGTC+CGG - chr3_4:49273995-49274014 None:intergenic 55.0%
!! CGGACCGGTTTGAAACGGTT+CGG + chr3_4:49273993-49274012 Msa0504550:CDS 55.0%
!! ATGGAAGTGCCACTGCCTAG+AGG - chr3_4:49276384-49276403 None:intergenic 55.0%
CGGACTCTGTGTTCCGACTT+TGG + chr3_4:49276842-49276861 Msa0504550:intron 55.0%
GTTCCAAGCTCCATTCCACG+AGG + chr3_4:49277252-49277271 Msa0504550:CDS 55.0%
TCCAAGCTCCATTCCACGAG+GGG + chr3_4:49277254-49277273 Msa0504550:CDS 55.0%
TACCGAATCGAAACCCCTCG+TGG - chr3_4:49277270-49277289 None:intergenic 55.0%
!! GAGGGGTTTCGATTCGGTAG+AGG + chr3_4:49277271-49277290 Msa0504550:CDS 55.0%
CATTGGCGCGCTGTGCTAAC+CGG - chr3_4:49273380-49273399 None:intergenic 60.0%
GTGGCTACGTCTACGCGCTA+CGG - chr3_4:49273444-49273463 None:intergenic 60.0%
!! CGGCGCGTAGAGTATTGGAG+GGG - chr3_4:49273511-49273530 None:intergenic 60.0%
!! GCGGCGCGTAGAGTATTGGA+GGG - chr3_4:49273512-49273531 None:intergenic 60.0%
AGGGGAGTAAGGGAAGGTGG+TGG - chr3_4:49273552-49273571 None:intergenic 60.0%
ACGAGGGGAGTAAGGGAAGG+TGG - chr3_4:49273555-49273574 None:intergenic 60.0%
GAGACGAGGGGAGTAAGGGA+AGG - chr3_4:49273558-49273577 None:intergenic 60.0%
ACCGTCATCTCCGGAGGAGA+CGG - chr3_4:49273651-49273670 None:intergenic 60.0%
!! GAAGATGGTGGTGGTGGTGG+TGG - chr3_4:49273923-49273942 None:intergenic 60.0%
ACCCCTCGTGGAATGGAGCT+TGG - chr3_4:49277258-49277277 None:intergenic 60.0%
!! AGAGGCGTCACGGTCGTATC+TGG + chr3_4:49278473-49278492 Msa0504550:CDS 60.0%
!! CTAACCGGCGTCGGCATCAC+CGG - chr3_4:49273365-49273384 None:intergenic 65.0%
!! GGCGGCGCGTAGAGTATTGG+AGG - chr3_4:49273513-49273532 None:intergenic 65.0%
GCAGGCGGCGCGTAGAGTAT+TGG - chr3_4:49273516-49273535 None:intergenic 65.0%
GGCACGGAAGTGGAGACGAG+GGG - chr3_4:49273570-49273589 None:intergenic 65.0%
GGGCACGGAAGTGGAGACGA+GGG - chr3_4:49273571-49273590 None:intergenic 65.0%
AGGGCACGGAAGTGGAGACG+AGG - chr3_4:49273572-49273591 None:intergenic 65.0%
!!! CGGCGGTGGTTTTGGTGGTG+GGG - chr3_4:49273628-49273647 None:intergenic 65.0%
!!! GCGGCGGTGGTTTTGGTGGT+GGG - chr3_4:49273629-49273648 None:intergenic 65.0%
GTCATCTCCGGAGGAGACGG+CGG - chr3_4:49273648-49273667 None:intergenic 65.0%
GCCGTCTCCTCCGGAGATGA+CGG + chr3_4:49273647-49273666 Msa0504550:CDS 65.0%
! GTCTCCTCCGGAGATGACGG+TGG + chr3_4:49273650-49273669 Msa0504550:CDS 65.0%
! TCAGGCGACGGAAAGCGCAG+TGG + chr3_4:49277814-49277833 Msa0504550:CDS 65.0%
CTTGCCGGTGATGCCGACGC+CGG + chr3_4:49273358-49273377 Msa0504550:exon 70.0%
CGCGCTGTGCTAACCGGCGT+CGG - chr3_4:49273374-49273393 None:intergenic 70.0%
GGCGCGTGAGCATGAGCAGG+CGG - chr3_4:49273531-49273550 None:intergenic 70.0%
GGTGGCGCGTGAGCATGAGC+AGG - chr3_4:49273534-49273553 None:intergenic 70.0%
!! GGTGGTGGGGAGACGGTCGA+GGG - chr3_4:49273615-49273634 None:intergenic 70.0%
!! TGGTGGTGGGGAGACGGTCG+AGG - chr3_4:49273616-49273635 None:intergenic 70.0%
!!! GGCGGCGGTGGTTTTGGTGG+TGG - chr3_4:49273630-49273649 None:intergenic 70.0%
!!! GACGGCGGCGGTGGTTTTGG+TGG - chr3_4:49273633-49273652 None:intergenic 70.0%
! GGAGACGGCGGCGGTGGTTT+TGG - chr3_4:49273636-49273655 None:intergenic 70.0%
ATCTCCGGAGGAGACGGCGG+CGG - chr3_4:49273645-49273664 None:intergenic 70.0%
TGGGCCACCGTCATCTCCGG+AGG - chr3_4:49273657-49273676 None:intergenic 70.0%
CGGTGGGCCACCGTCATCTC+CGG - chr3_4:49273660-49273679 None:intergenic 70.0%
! CGGAGATGACGGTGGCCCAC+CGG + chr3_4:49273658-49273677 Msa0504550:CDS 70.0%
ACCACCGCCGCCGTCTCCTC+CGG + chr3_4:49273638-49273657 Msa0504550:CDS 75.0%
! TCCGGAGGAGACGGCGGCGG+TGG - chr3_4:49273642-49273661 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 49273108 49279235 49273108 ID=Msa0504550;Name=Msa0504550
chr3_4 mRNA 49273108 49279235 49273108 ID=Msa0504550-mRNA-1;Parent=Msa0504550;Name=Msa0504550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=260|1|1|1|1|1|3|297|1081
chr3_4 exon 49273108 49274572 49273108 ID=Msa0504550-mRNA-1:exon:10578;Parent=Msa0504550-mRNA-1
chr3_4 exon 49275758 49275983 49275758 ID=Msa0504550-mRNA-1:exon:10579;Parent=Msa0504550-mRNA-1
chr3_4 exon 49277124 49279235 49277124 ID=Msa0504550-mRNA-1:exon:10580;Parent=Msa0504550-mRNA-1
chr3_4 five_prime_UTR 49273108 49273367 49273108 ID=Msa0504550-mRNA-1:five_prime_utr;Parent=Msa0504550-mRNA-1
chr3_4 CDS 49273368 49274572 49273368 ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4 CDS 49275758 49275983 49275758 ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4 CDS 49277124 49278938 49277124 ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4 three_prime_UTR 49278939 49279235 49278939 ID=Msa0504550-mRNA-1:three_prime_utr;Parent=Msa0504550-mRNA-1
Gene Sequence

>Msa0504550

ATGCCGACGCCGGTTAGCACAGCGCGCCAATGTTTAACTGACGAAGCAGCGCGTGCTCTTGACGAAGCAGTCTCCGTAGCGCGTAGACGTAGCCACCCTCAAACAACTTCTCTCCACGCTATCTCCGCTTTACTTTCTCTCCCCTCCAATACTCTACGCGCCGCCTGCTCATGCTCACGCGCCACCACCTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTCGACCGTCTCCCCACCACCAAAACCACCGCCGCCGTCTCCTCCGGAGATGACGGTGGCCCACCGGTTTCCAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTTAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCACCACCACCATCTTCTAGATTCTTTCACCGTTCTCCTCCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAAAATTCAAGAAGGGTTGTTGATGTTTTAGCTGGGAAGAGTGGGAGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGCTCAAAGTGGAAAAGTTGGTTTTTTACCTAATGAGCTTGATGGGTTAAAAGTAGTTTCTATTGAGAATGAAATTTTTGAGTTTGTTATTGGAAATGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAATTTACATGCTGGTGTTGTTCTATGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTACCTGTGACATCTGCTACTCCTTCTATGGACGGACTATACTCTAAATCCAGCTTAATGGGGTCTTTTGTTCCATTTGGTGGCTTCTTTTCCACACCTTCTGATTTCAGAAATCCAAATCCATCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGCTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGATAGAGGATTAGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAGCATCTTCATCAAAACAAATCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTCCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTCGATGTACAAAATCCTTTCCTTAACCACAAGTCATCTATGTCCTTTAATCCCGTCACCACAGATTTGGTTTTGGGAACGACATATACATCGGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCAGGTCATAATTTCGATGGAAAATTTGAAATGGTTGATTTCAAATCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAGGCGACGGAAAGCGCAGTGGATCAAATGTTAGAGCCGACACATGGTTTTCTTTTCTTGGGCCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAAACAGTCGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCAATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCTTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAATTATCACTTGGACATACTTCCGAGGATATCTTTAGAAGCAGTAGCAAAAATGTGAGGGTTTCAAAGAGAAATGGAACTTTTCTGAATAAAAGAAAGCTCTGTGAAACCGAAAGCAGTGATTCCAATGAGAAAGTAACTAGCAAGACAATGAAACATAACAAAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGTGGAAGATGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTTGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTCGGAAACAGCTTTGTCGAGGCACAAAAAAAGTATCGCAATGTAGCTGAATATGTAATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACGTGAACTAA
Protein sequence

>Msa0504550

MPTPVSTARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLSLPSNTLRAACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAAVSSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPSSRFFHRSPPPVFLCNIEPDRFETVRFDENSRRVVDVLAGKSGSKRNPLLMGVYAKTALKRFIELAQSGKVGFLPNELDGLKVVSIENEIFEFVIGNGSEEKMGLRFDEVGHLVEQNLHAGVVLCFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMDGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSLTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKVNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKSLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQTPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKFDVQNPFLNHKSSMSFNPVTTDLVLGTTYTSVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNFDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGFFDMEKEPKIFPEERILEAKRCQIELSLGHTSEDIFRSSSKNVRVSKRNGTFLNKRKLCETESSDSNEKVTSKTMKHNKEASRSYLDLNMPLEEEVEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATGVCLPARINVN*