AlfalfaGEDB | Msa0504550

M. sativa cultivar zhongmu-4 / Msa0504550

KEGG: K03695
GO: GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
PFAM: PF07724.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504550	XP_013460256.1	96.947	1081	32	1	1	1081	1	1080	0.0	2167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504550	sp\|O80875\|SMXL7_ARATH	42.792	1103	506	35	1	1080	1	1001	0.0	724

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504550	A0A072UXI8	96.947	1081	32	1	1	1081	1	1080	0.0	2167

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185640	Msa0504550	-0.800203	1.608831e-48	-8.615850e-47
Msa0412970	Msa0504550	0.962721	3.237873e-121	-8.615850e-47
Msa0416800	Msa0504550	0.813130	2.991115e-51	-8.615850e-47
Msa0457290	Msa0504550	0.856764	2.579951e-62	-8.615850e-47
Msa0463460	Msa0504550	0.827853	1.243362e-54	-8.615850e-47
Msa0504550	Msa0509020	0.821857	3.230800e-53	-8.615850e-47
Msa0504550	Msa1186570	0.827304	1.684479e-54	-8.615850e-47
Msa0504550	Msa1296960	-0.802231	6.188656e-49	-8.615850e-47
Msa0504550	Msa1336470	0.801214	1.000803e-48	-8.615850e-47
Msa0504550	Msa1358960	0.814875	1.232929e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504550	MtrunA17_Chr3g0105051	96.947	1081	32	1	1	1081	1	1080	0.0	2167
Msa0504550	MtrunA17_Chr5g0430201	57.282	1126	400	28	1	1080	1	1091	0.0	1104
Msa0504550	MtrunA17_Chr3g0113631	38.183	1134	589	33	1	1078	1	1078	0.0	607
Msa0504550	MtrunA17_Chr4g0073021	28.853	1168	613	44	1	1080	1	1038	1.45e-106	358
Msa0504550	MtrunA17_Chr1g0197121	30.899	534	294	20	6	509	7	495	3.97e-41	163
Msa0504550	MtrunA17_Chr7g0235711	37.391	230	132	4	600	826	13	233	1.25e-34	133
Msa0504550	MtrunA17_Chr2g0298801	31.607	560	270	24	1	507	1	500	1.33e-30	130
Msa0504550	MtrunA17_Chr1g0177421	27.788	529	297	23	1	500	1	473	3.76e-30	129
Msa0504550	MtrunA17_Chr1g0177421	28.821	229	152	5	624	844	510	735	1.41e-11	68.9
Msa0504550	MtrunA17_Chr4g0071701	38.023	263	136	7	9	263	9	252	6.93e-25	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0504550	AT2G29970.1	42.792	1103	506	35	1	1080	1	1001	0.0	724
Msa0504550	AT1G07200.2	40.433	1108	501	28	1	1080	1	977	0.0	692
Msa0504550	AT2G40130.2	44.099	483	212	17	1	463	1	445	2.22e-101	341
Msa0504550	AT2G40130.2	33.099	426	237	13	655	1068	512	901	1.20e-47	185
Msa0504550	AT2G40130.1	44.099	483	212	17	1	463	1	445	2.29e-101	341
Msa0504550	AT2G40130.1	33.099	426	237	13	655	1068	509	898	1.25e-47	185
Msa0504550	AT5G57710.1	29.259	1080	582	36	1	1036	1	942	2.94e-96	328
Msa0504550	AT1G07200.1	35.010	497	238	12	590	1080	3	420	2.20e-67	233
Msa0504550	AT3G52490.1	29.333	525	299	19	7	514	7	476	6.81e-40	160
Msa0504550	AT3G52490.1	27.228	202	140	3	650	845	547	747	1.09e-12	72.8

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Find 238 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAATCTGTGGTGAC+GGG	0.552108	3_4:-49277508	None:intergenic
AAAACGACGCAGTTTGATTC+TGG	0.270613	3_4:-49273784	None:intergenic
AAAAGTTTGGTGGCAAGATG+AGG	0.571818	3_4:+49277753	Msa0504550:CDS
AAACAATTTCAAACACCATT+TGG	0.331958	3_4:+49278669	Msa0504550:CDS
AAAGTAAAGCGGAGATAGCG+TGG	0.556221	3_4:-49273481	None:intergenic
AAATGGGAGTGAGGAGAAGA+TGG	0.412598	3_4:+49274225	Msa0504550:CDS
AACATAACAAAGAGGCGTCA+CGG	0.631267	3_4:+49278463	Msa0504550:CDS
AACATCTGTTTGGATGGAAA+TGG	0.480655	3_4:-49277361	None:intergenic
AAGAAAAGAAAACCATGTGT+CGG	0.632597	3_4:-49277851	None:intergenic
AAGAATCTAGAAGATGGTGG+TGG	0.695136	3_4:-49273929	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGGAAAAAATTTAGTGAG+AGG	-	chr3_4:49273160-49273179	None:intergenic	30.0%
TGATGATCCTATAGTTAGTA+GGG	+	chr3_4:49273844-49273863	Msa0504550:CDS	30.0%
GTTCGATGAAAATTCAAGAA+GGG	+	chr3_4:49274015-49274034	Msa0504550:CDS	30.0%
TTTATAGAGTTAGCTCAAAG+TGG	+	chr3_4:49274121-49274140	Msa0504550:CDS	30.0%
GTTGAACAAAATTTACATGC+TGG	+	chr3_4:49274277-49274296	Msa0504550:CDS	30.0%
CCCTAATGTTGAAAAAGATT+TGG	+	chr3_4:49274486-49274505	Msa0504550:CDS	30.0%
AGAAAAAAGAGAAACATACC+TGG	-	chr3_4:49274572-49274591	None:intergenic	30.0%
AACCAATAAGGAAACAGAAA+AGG	-	chr3_4:49274597-49274616	None:intergenic	30.0%
TGACATGTCAATATGATCAT+TGG	+	chr3_4:49274856-49274875	Msa0504550:intron	30.0%
TTAGAGTGATAAAGAAGAGT+TGG	-	chr3_4:49274971-49274990	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	49273108	49279235	49273108	ID=Msa0504550;Name=Msa0504550
chr3_4	mRNA	49273108	49279235	49273108	ID=Msa0504550-mRNA-1;Parent=Msa0504550;Name=Msa0504550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=260\|1\|1\|1\|1\|1\|3\|297\|1081
chr3_4	exon	49273108	49274572	49273108	ID=Msa0504550-mRNA-1:exon:10578;Parent=Msa0504550-mRNA-1
chr3_4	exon	49275758	49275983	49275758	ID=Msa0504550-mRNA-1:exon:10579;Parent=Msa0504550-mRNA-1
chr3_4	exon	49277124	49279235	49277124	ID=Msa0504550-mRNA-1:exon:10580;Parent=Msa0504550-mRNA-1
chr3_4	five_prime_UTR	49273108	49273367	49273108	ID=Msa0504550-mRNA-1:five_prime_utr;Parent=Msa0504550-mRNA-1
chr3_4	CDS	49273368	49274572	49273368	ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4	CDS	49275758	49275983	49275758	ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4	CDS	49277124	49278938	49277124	ID=Msa0504550-mRNA-1:cds;Parent=Msa0504550-mRNA-1
chr3_4	three_prime_UTR	49278939	49279235	49278939	ID=Msa0504550-mRNA-1:three_prime_utr;Parent=Msa0504550-mRNA-1

Gene Sequence

>Msa0504550

ATGCCGACGCCGGTTAGCACAGCGCGCCAATGTTTAACTGACGAAGCAGCGCGTGCTCTTGACGAAGCAGTCTCCGTAGCGCGTAGACGTAGCCACCCTCAAACAACTTCTCTCCACGCTATCTCCGCTTTACTTTCTCTCCCCTCCAATACTCTACGCGCCGCCTGCTCATGCTCACGCGCCACCACCTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTCGACCGTCTCCCCACCACCAAAACCACCGCCGCCGTCTCCTCCGGAGATGACGGTGGCCCACCGGTTTCCAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTTAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCACCACCACCATCTTCTAGATTCTTTCACCGTTCTCCTCCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAAAATTCAAGAAGGGTTGTTGATGTTTTAGCTGGGAAGAGTGGGAGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGCTCAAAGTGGAAAAGTTGGTTTTTTACCTAATGAGCTTGATGGGTTAAAAGTAGTTTCTATTGAGAATGAAATTTTTGAGTTTGTTATTGGAAATGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAATTTACATGCTGGTGTTGTTCTATGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTACCTGTGACATCTGCTACTCCTTCTATGGACGGACTATACTCTAAATCCAGCTTAATGGGGTCTTTTGTTCCATTTGGTGGCTTCTTTTCCACACCTTCTGATTTCAGAAATCCAAATCCATCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGCTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGATAGAGGATTAGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAGCATCTTCATCAAAACAAATCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTCCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTCGATGTACAAAATCCTTTCCTTAACCACAAGTCATCTATGTCCTTTAATCCCGTCACCACAGATTTGGTTTTGGGAACGACATATACATCGGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCAGGTCATAATTTCGATGGAAAATTTGAAATGGTTGATTTCAAATCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAGGCGACGGAAAGCGCAGTGGATCAAATGTTAGAGCCGACACATGGTTTTCTTTTCTTGGGCCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAAACAGTCGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCAATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCTTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAATTATCACTTGGACATACTTCCGAGGATATCTTTAGAAGCAGTAGCAAAAATGTGAGGGTTTCAAAGAGAAATGGAACTTTTCTGAATAAAAGAAAGCTCTGTGAAACCGAAAGCAGTGATTCCAATGAGAAAGTAACTAGCAAGACAATGAAACATAACAAAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGTGGAAGATGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTTGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTCGGAAACAGCTTTGTCGAGGCACAAAAAAAGTATCGCAATGTAGCTGAATATGTAATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACGTGAACTAA

Protein sequence

>Msa0504550

MPTPVSTARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLSLPSNTLRAACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAAVSSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPSSRFFHRSPPPVFLCNIEPDRFETVRFDENSRRVVDVLAGKSGSKRNPLLMGVYAKTALKRFIELAQSGKVGFLPNELDGLKVVSIENEIFEFVIGNGSEEKMGLRFDEVGHLVEQNLHAGVVLCFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMDGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSLTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKVNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKSLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQTPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKFDVQNPFLNHKSSMSFNPVTTDLVLGTTYTSVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNFDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGFFDMEKEPKIFPEERILEAKRCQIELSLGHTSEDIFRSSSKNVRVSKRNGTFLNKRKLCETESSDSNEKVTSKTMKHNKEASRSYLDLNMPLEEEVEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATGVCLPARINVN*