AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412970 MtrunA17_Chr3g0105051 97.040 1081 31 1 1 1081 1 1080 0.0 2172
Msa0412970 MtrunA17_Chr5g0430201 57.460 1126 398 28 1 1080 1 1091 0.0 1110
Msa0412970 MtrunA17_Chr3g0113631 38.434 1137 588 33 1 1081 1 1081 0.0 613
Msa0412970 MtrunA17_Chr4g0073021 28.521 1129 597 40 1 1047 1 1001 3.27e-106 357
Msa0412970 MtrunA17_Chr1g0197121 30.712 534 295 20 6 509 7 495 6.28e-41 163
Msa0412970 MtrunA17_Chr7g0235711 37.500 232 129 4 600 826 13 233 3.53e-36 137
Msa0412970 MtrunA17_Chr2g0298801 31.429 560 271 24 1 507 1 500 2.27e-30 130
Msa0412970 MtrunA17_Chr1g0177421 27.977 529 296 23 1 500 1 473 2.66e-30 129
Msa0412970 MtrunA17_Chr1g0177421 28.384 229 153 4 624 844 510 735 1.75e-11 68.6
Msa0412970 MtrunA17_Chr4g0071701 38.023 263 136 7 9 263 9 252 7.62e-25 111
Msa0412970 MtrunA17_Chr4g0071701 27.907 301 169 12 683 975 449 709 1.56e-11 68.9
Msa0412970 MtrunA17_Chr4g0061371 28.649 185 104 5 671 843 556 724 2.29e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412970 AT2G29970.1 42.430 1103 510 35 1 1080 1 1001 0.0 718
Msa0412970 AT1G07200.2 40.614 1108 499 28 1 1080 1 977 0.0 694
Msa0412970 AT2G40130.2 43.892 483 213 17 1 463 1 445 4.98e-101 340
Msa0412970 AT2G40130.2 33.580 405 215 12 678 1068 537 901 4.80e-47 183
Msa0412970 AT2G40130.1 42.745 510 234 17 1 490 1 472 5.69e-101 340
Msa0412970 AT2G40130.1 33.580 405 215 12 678 1068 534 898 4.68e-47 183
Msa0412970 AT5G57710.1 29.525 1094 561 41 1 1036 1 942 1.26e-94 324
Msa0412970 AT1G07200.1 35.010 497 238 11 590 1080 3 420 5.01e-68 235
Msa0412970 AT3G52490.1 29.524 525 298 19 7 514 7 476 3.45e-40 160
Msa0412970 AT3G52490.1 26.471 204 141 3 651 845 544 747 8.92e-13 73.2
Msa0412970 AT4G30350.1 29.866 596 312 23 1 539 1 547 5.92e-40 160
Msa0412970 AT4G30350.1 26.049 453 252 11 605 1057 531 900 1.64e-35 146
Msa0412970 AT4G29920.1 29.322 590 279 22 1 507 1 535 1.06e-33 141
Msa0412970 AT4G29920.2 29.005 593 280 22 1 507 1 538 1.10e-32 137
Msa0412970 AT5G57130.1 26.016 615 299 20 1 504 1 570 2.37e-26 117
Msa0412970 AT2G25140.1 32.558 172 94 6 681 843 647 805 5.53e-11 67.4
Msa0412970 AT1G74310.2 27.568 185 106 5 671 843 553 721 8.48e-11 67.0

Find 245 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTTGTTGGAGGTTTA+TGG 0.130799 3_2:+57084974 Msa0412970:CDS
AATATTTCCCAAACATTAAC+AGG 0.207831 3_2:+57087820 Msa0412970:CDS
TTATTTAATTTGCAGCTTAA+TGG 0.221920 3_2:+57086338 Msa0412970:intron
AATCTGTGGTGACGGGATTA+AGG 0.223777 3_2:-57088092 None:intergenic
GTTTGGGAAATATTGATTTC+AGG 0.232339 3_2:-57087811 None:intergenic
GTACTTGCAGAAACTCTATT+TGG 0.237968 3_2:+57088501 Msa0412970:CDS
TATTTAATTTGCAGCTTAAT+GGG 0.240310 3_2:+57086339 Msa0412970:intron
GCTGGTGTTGTTCTATGTTT+TGG 0.244808 3_2:+57084872 Msa0412970:CDS
TCTTATGATCACTTAGTTTC+GGG 0.247752 3_2:-57088161 None:intergenic
TTCTTATGATCACTTAGTTT+CGG 0.248562 3_2:-57088162 None:intergenic
GGAGACGGCGGCGGTGGTTT+TGG 0.263698 3_2:-57084210 None:intergenic
AAAACGACGCAGTTTGATTC+TGG 0.270613 3_2:-57084361 None:intergenic
CGTCACCACAGATTTGGTTT+TGG 0.271636 3_2:+57088101 Msa0412970:CDS
AGACTCCGACAGAGAGTTCT+AGG 0.272563 3_2:-57084166 None:intergenic
TTTGAGTTTGTTATTGGAAA+TGG 0.276607 3_2:+57084785 Msa0412970:CDS
AGAGTTAAAGATGATGGATT+TGG 0.286880 3_2:-57086414 None:intergenic
AGAGGCGTCACGGTCGTATC+TGG 0.288924 3_2:+57089064 Msa0412970:CDS
CTTTCCTCGGGAAATATCTT+TGG 0.291800 3_2:-57088849 None:intergenic
CTTGGAACCCTGTTAATGTT+TGG 0.302700 3_2:-57087828 None:intergenic
GTATCAAAAGGTTGTGAAAA+TGG 0.303380 3_2:-57087976 None:intergenic
GATTTCCTTGCACAAATTGA+TGG 0.308028 3_2:+57089173 Msa0412970:CDS
CATTGTCGCGCTGTGCTTAC+CGG 0.309543 3_2:-57083954 None:intergenic
CAAACTTGTGTTATCTTCAT+TGG 0.313695 3_2:-57087716 None:intergenic
TTTAACCCATCAAGCTCATT+AGG 0.314204 3_2:-57084737 None:intergenic
GTGGATTCAGATAGAGGATT+AGG 0.326823 3_2:+57086546 Msa0412970:CDS
GAGAGAGAGTAAGGCGGATA+TGG 0.327445 3_2:-57084063 None:intergenic
TAGAACAGTGGATTTCATTA+AGG 0.328940 3_2:-57087894 None:intergenic
TCTTTAGACATGTAGGGAAT+TGG 0.329298 3_2:-57087919 None:intergenic
CTCAGTGGATTTAAGCTCTA+AGG 0.329643 3_2:+57088542 Msa0412970:CDS
AGGTTTATGGTGGGAAGATT+TGG 0.330662 3_2:+57084987 Msa0412970:CDS
AGGAAGAGGATCTAGCAATT+TGG 0.330709 3_2:-57088251 None:intergenic
AAACAATTTCAAACACCATT+TGG 0.331958 3_2:+57089260 Msa0412970:CDS
TTGATGATCCTATAGTTAGT+AGG 0.341711 3_2:+57084420 Msa0412970:CDS
TCACTTAGTTTCGGGGTATC+TGG 0.349818 3_2:-57088153 None:intergenic
TTCATTCCATCAGAATAATC+AGG 0.350311 3_2:-57089719 None:intergenic
TTGGAACCCTGTTAATGTTT+GGG 0.351629 3_2:-57087827 None:intergenic
TAATCCCGTCACCACAGATT+TGG 0.351664 3_2:+57088095 Msa0412970:CDS
GACATCTGCTACTCCTTCTA+TGG 0.357875 3_2:+57085105 Msa0412970:CDS
TACATGTTCAGCTTTATCTT+TGG 0.361577 3_2:-57088010 None:intergenic
ATTTGGTTGGTGGGTGTAGC+AGG 0.364020 3_2:+57085004 Msa0412970:CDS
TTGAGTTTGTTATTGGAAAT+GGG 0.369479 3_2:+57084786 Msa0412970:CDS
ATTTGTATAATGTAGCTTGT+AGG 0.370139 3_2:+57089563 Msa0412970:three_prime_UTR
ATTTCCCTACCATGTGAGTA+TGG 0.370800 3_2:-57088750 None:intergenic
GTTTGCTTGAGAGCGTTTAA+TGG 0.377128 3_2:-57084279 None:intergenic
TGTAGTAAATGGAAGCTATC+TGG 0.381763 3_2:-57084314 None:intergenic
ACGAGGGGAGTAAGGGAAGG+TGG 0.386814 3_2:-57084129 None:intergenic
CTTTCACCGTTCTCCTCCTC+CGG 0.389204 3_2:+57084526 Msa0412970:CDS
GTGTTGTGTTTGTTGTTTCA+AGG 0.391518 3_2:+57084948 Msa0412970:CDS
ATCTGTGGTGACGGGATTAA+GGG 0.392555 3_2:-57088091 None:intergenic
GCTGCATTATCTGTAGTAAA+TGG 0.394673 3_2:-57084325 None:intergenic
AAGTGGAGACGAGGGGAGTA+AGG 0.396612 3_2:-57084137 None:intergenic
ACATAGATGACTTGTGGTTA+AGG 0.398461 3_2:-57088068 None:intergenic
CTAATGCAAGTGAGTGTGTT+TGG 0.400249 3_2:-57083750 None:intergenic
AGCTTCAAGGATTCTTTCCT+CGG 0.401396 3_2:-57088862 None:intergenic
TCTTCGGATTGCAGAGGAAA+TGG 0.405547 3_2:+57087749 Msa0412970:CDS
AGTTTGAATGCTAAGATCTT+CGG 0.408390 3_2:+57087733 Msa0412970:CDS
TGGTGGTGGGGAGACGGTCG+AGG 0.414278 3_2:-57084190 None:intergenic
TTCAAGGTTAACAAGGTTGT+TGG 0.414305 3_2:+57084964 Msa0412970:CDS
TTTGTATAATGTAGCTTGTA+GGG 0.419515 3_2:+57089564 Msa0412970:three_prime_UTR
GTTAATGTGGATTCAGATAG+AGG 0.421276 3_2:+57086540 Msa0412970:CDS
AGCACAAAATTTGATCCAAA+TGG 0.422922 3_2:-57089275 None:intergenic
AGCTGAGTATGTAATGAAAT+TGG 0.427181 3_2:+57089433 Msa0412970:CDS
GAGTATAGTCCGTCCATAGA+AGG 0.428101 3_2:-57085118 None:intergenic
GGTGGGAAGATTTGGTTGGT+GGG 0.428555 3_2:+57084995 Msa0412970:CDS
TGAAAATGGTAACATCTGTT+TGG 0.429341 3_2:-57087962 None:intergenic
ATTATGACACTTTGTAGATC+AGG 0.432244 3_2:+57088387 Msa0412970:CDS
CTAGAAGATGGTGGTGGTGG+TGG 0.432679 3_2:-57084500 None:intergenic
GTGAGGGTTTCAAAGAGAAA+TGG 0.434308 3_2:+57088954 Msa0412970:CDS
TGGTGGGAAGATTTGGTTGG+TGG 0.435896 3_2:+57084994 Msa0412970:CDS
TTCCGACGGAAAATTTGAAA+TGG 0.437639 3_2:+57088287 Msa0412970:CDS
GTTGGAGGGGAGAGAGAGTA+AGG 0.439039 3_2:-57084072 None:intergenic
TCGAATGTCACGATGTGCTT+AGG 0.443577 3_2:+57088592 Msa0412970:CDS
TAATATGAGTTAGGAGGAAA+AGG 0.444014 3_2:+57089798 Msa0412970:three_prime_UTR
TTCAGATAGAGGATTAGGTT+TGG 0.444163 3_2:+57086551 Msa0412970:CDS
TTCCACGAGGGGTTTCGATT+CGG 0.446189 3_2:+57087856 Msa0412970:CDS
CGTGGAGAGAGGTTGTTTGA+GGG 0.451683 3_2:-57084040 None:intergenic
GGATCATTATAATATGAGTT+AGG 0.455717 3_2:+57089789 Msa0412970:three_prime_UTR
TCCGGAGGAGACGGCGGCGG+TGG 0.457326 3_2:-57084216 None:intergenic
ATCAGAATAATCAGGAGAAC+TGG 0.457425 3_2:-57089711 None:intergenic
TTGTTACAAGCAATAAGAAC+AGG 0.461715 3_2:+57088720 Msa0412970:CDS
CGCGCTGTGCTTACCGGCGT+CGG 0.463296 3_2:-57083948 None:intergenic
GAAGCATCTTCAGCACTTGT+CGG 0.464177 3_2:+57088182 Msa0412970:CDS
TCTTCTGTGTTCAAAGTTGG+CGG 0.464178 3_2:+57088804 Msa0412970:CDS
AAGTTTACCTTGGTTACAAA+AGG 0.464777 3_2:+57086518 Msa0412970:CDS
TTAGCTCAAAGTGGAAAAGT+TGG 0.464881 3_2:+57084707 Msa0412970:CDS
GCATAAACACCCATCAAAAG+AGG 0.465899 3_2:-57084656 None:intergenic
CATTCGAAAATCGAGTTCAA+TGG 0.467152 3_2:-57088576 None:intergenic
GGATGAAGATGGTGAAGAGA+AGG 0.467340 3_2:-57083687 None:intergenic
ACCACCGCCGCCGTCTCCTC+CGG 0.469398 3_2:+57084215 Msa0412970:CDS
CGGTGGGCCACCGTCATCTC+CGG 0.469966 3_2:-57084234 None:intergenic
TGATGATCCTATAGTTAGTA+GGG 0.470607 3_2:+57084421 Msa0412970:CDS
AAATGGGAGTGAAGAGAAGA+TGG 0.471522 3_2:+57084802 Msa0412970:CDS
ACCTCTTCTGTGTTCAAAGT+TGG 0.473166 3_2:+57088801 Msa0412970:CDS
CAAGTGAGTGTGTTTGGGTA+TGG 0.474544 3_2:-57083744 None:intergenic
TGAACCGGACCGGTTTGAAA+CGG 0.475140 3_2:+57084565 Msa0412970:CDS
CTTACCGGCGTCGGCATCAC+CGG 0.475894 3_2:-57083939 None:intergenic
CAGTGCACGCGCTGCTTCGT+CGG 0.475972 3_2:-57083982 None:intergenic
AGTTCTCCTGATTATTCTGA+TGG 0.476971 3_2:+57089713 Msa0412970:three_prime_UTR
GCGTGGAGAGAGGTTGTTTG+AGG 0.477264 3_2:-57084041 None:intergenic
TAATGCAAGTGAGTGTGTTT+GGG 0.478253 3_2:-57083749 None:intergenic
TGCACAAATTGATGGAAAAG+TGG 0.479114 3_2:+57089181 Msa0412970:CDS
GTATCTGGCTCATGAGTAAC+CGG 0.479318 3_2:-57088138 None:intergenic
GCACTAAGAGTAGTATCAAA+AGG 0.479932 3_2:-57087988 None:intergenic
TTGTAACTCTTTAGACATGT+AGG 0.480247 3_2:-57087926 None:intergenic
AACATCTGTTTGGATGGAAA+TGG 0.480655 3_2:-57087952 None:intergenic
CAGAGATACTTGCAGCTGCT+TGG 0.481053 3_2:+57089321 Msa0412970:CDS
GATTGGATTGAACATGTTCT+CGG 0.483455 3_2:+57089371 Msa0412970:CDS
ACCCCTCGTGGAATGGAGCT+TGG 0.485678 3_2:-57087846 None:intergenic
TCACAAAGAGTTAAAGATGA+TGG 0.485913 3_2:-57086420 None:intergenic
ACAGTCGTGGATTATATTGC+TGG 0.487204 3_2:+57088621 Msa0412970:CDS
GTTGAACAAAATTTACATGC+TGG 0.488251 3_2:+57084854 Msa0412970:CDS
GAGGGGTTTCGATTCGGTAG+AGG 0.491158 3_2:+57087862 Msa0412970:CDS
AGAGTTCTAGGGCACGGAAG+TGG 0.493582 3_2:-57084154 None:intergenic
TTTGTGGAAGAGCAAGCTAC+AGG 0.498965 3_2:+57089473 Msa0412970:CDS
GTGGAAAAGAAGCCACCAAA+TGG 0.501664 3_2:-57086372 None:intergenic
CGACGAAGCAGCGCGTGCAC+TGG 0.502941 3_2:+57083983 Msa0412970:CDS
AATCGAAACCCCTCGTGGAA+TGG 0.506142 3_2:-57087853 None:intergenic
GCAAGTAAATCAAAATTGAA+TGG 0.507263 3_2:-57089212 None:intergenic
CGGACCGGTTTGAAACGGTT+CGG 0.508642 3_2:+57084570 Msa0412970:CDS
AGTGGAGACGAGGGGAGTAA+GGG 0.509111 3_2:-57084136 None:intergenic
TGTAACTCTTTAGACATGTA+GGG 0.509316 3_2:-57087925 None:intergenic
GCCATGAGAGAGTTGGAAAC+CGG 0.510278 3_2:-57084254 None:intergenic
CATCATCAACAAGTTTACCT+TGG 0.511750 3_2:+57086508 Msa0412970:CDS
CTTGTAGGGTATATAGCATT+CGG 0.511897 3_2:+57089578 Msa0412970:three_prime_UTR
TAGTTCAAGTTAATTCTAGC+TGG 0.514930 3_2:-57089506 None:intergenic
AATGGGAGTGAAGAGAAGAT+GGG 0.517435 3_2:+57084803 Msa0412970:CDS
TTGGTTACAAAAGGTTAATG+TGG 0.518434 3_2:+57086527 Msa0412970:CDS
AGGTTGTTGGAGGTTTATGG+TGG 0.519138 3_2:+57084977 Msa0412970:CDS
GAGACGAGGGGAGTAAGGGA+AGG 0.520254 3_2:-57084132 None:intergenic
ACCGTCATCTCCGGAGGAGA+CGG 0.520276 3_2:-57084225 None:intergenic
GAAAGTGAGAAGGATGAAGA+TGG 0.520598 3_2:-57083698 None:intergenic
AATGGTAACATCTGTTTGGA+TGG 0.522424 3_2:-57087958 None:intergenic
AAGGTTAACAAGGTTGTTGG+AGG 0.523476 3_2:+57084967 Msa0412970:CDS
CAAAACCAAATCTGTGGTGA+CGG 0.525559 3_2:-57088100 None:intergenic
TTTATATTCAAACGAAGTGA+AGG 0.525694 3_2:+57089768 Msa0412970:three_prime_UTR
GCCGTCTCCTCCGGAGATGA+CGG 0.528753 3_2:+57084224 Msa0412970:CDS
GTTCGATGAAAATTCAAGAA+GGG 0.533471 3_2:+57084592 Msa0412970:CDS
GGCGGCGCGTAGAGCGTTGG+AGG 0.533530 3_2:-57084087 None:intergenic
TTTGGATTTCTGAAATCAGA+AGG 0.534039 3_2:-57086396 None:intergenic
GCTAGATCCTCTTCCTACTC+AGG 0.534790 3_2:+57088258 Msa0412970:CDS
ACCGGTTTCCAACTCTCTCA+TGG 0.535576 3_2:+57084253 Msa0412970:CDS
GAAGGAGTAGCAGATGTCAC+AGG 0.536186 3_2:-57085100 None:intergenic
AATTTCCATACTCACATGGT+AGG 0.537595 3_2:+57088745 Msa0412970:CDS
TTATGGTGGGAAGATTTGGT+TGG 0.537707 3_2:+57084991 Msa0412970:CDS
CTTGTTGATGATGAAGAAGA+AGG 0.537875 3_2:-57086498 None:intergenic
GCTTCAAGGATTCTTTCCTC+GGG 0.538993 3_2:-57088861 None:intergenic
AAGTGAGTGTGTTTGGGTAT+GGG 0.539932 3_2:-57083743 None:intergenic
GAAGATGGTGAAGAGAAGGA+TGG 0.542180 3_2:-57083683 None:intergenic
TATGTAATATTGAACCGGAC+CGG 0.543055 3_2:+57084555 Msa0412970:CDS
TATGCCTCTAGAAGAGGAAG+TGG 0.543147 3_2:+57089094 Msa0412970:CDS
GCAGGCGGCGCGTAGAGCGT+TGG 0.547074 3_2:-57084090 None:intergenic
AATGTCACGATGTGCTTAGG+AGG 0.549065 3_2:+57088595 Msa0412970:CDS
GGTGGCGCGTGAGCATGAGC+AGG 0.550220 3_2:-57084108 None:intergenic
ATCTCCGGAGGAGACGGCGG+CGG 0.551091 3_2:-57084219 None:intergenic
AAAACCAAATCTGTGGTGAC+GGG 0.552108 3_2:-57088099 None:intergenic
CGAACCGAACCGTTTCAAAC+CGG 0.553501 3_2:-57084574 None:intergenic
CGGAGATGACGGTGGCCCAC+CGG 0.556211 3_2:+57084235 Msa0412970:CDS
GGTGGTGGGGAGACGGTCGA+GGG 0.558134 3_2:-57084189 None:intergenic
AATGGCTGCCATGAGAGAGT+TGG 0.562677 3_2:-57084261 None:intergenic
GAGAGGAAGAGAAAGTGAGA+AGG 0.563444 3_2:-57083708 None:intergenic
GGTTCGATGAAAATTCAAGA+AGG 0.563642 3_2:+57084591 Msa0412970:CDS
GGAGAGAGGTTGTTTGAGGG+TGG 0.564060 3_2:-57084037 None:intergenic
TTTATAGAGTTAGCTCAAAG+TGG 0.565828 3_2:+57084698 Msa0412970:CDS
ATGAGAGAGTTGGAAACCGG+TGG 0.567904 3_2:-57084251 None:intergenic
CGGTGAAAGAATCTAGAAGA+TGG 0.569218 3_2:-57084512 None:intergenic
ATTTCTGAAATCAGAAGGTG+TGG 0.569693 3_2:-57086391 None:intergenic
AAAAGTTTGGTGGCAAGATG+AGG 0.571818 3_2:+57088344 Msa0412970:CDS
CTTATGATCACTTAGTTTCG+GGG 0.573967 3_2:-57088160 None:intergenic
ATTTCCATACTCACATGGTA+GGG 0.574024 3_2:+57088746 Msa0412970:CDS
GATGATGATGTTATTGATGA+TGG 0.574381 3_2:+57084926 Msa0412970:CDS
GATGACTTGTGGTTAAGGAA+AGG 0.575003 3_2:-57088063 None:intergenic
AATCTAGAAGATGGTGGTGG+TGG 0.576163 3_2:-57084503 None:intergenic
AGAGTAAGGCGGATATGGCG+TGG 0.576287 3_2:-57084058 None:intergenic
TCAAGTTAATTCTAGCTGGA+AGG 0.576437 3_2:-57089502 None:intergenic
GCGGCGCGTAGAGCGTTGGA+GGG 0.577139 3_2:-57084086 None:intergenic
TGTCAAATTGAATTATCACT+TGG 0.577909 3_2:+57088891 Msa0412970:CDS
GGCGCGTGAGCATGAGCAGG+CGG 0.578477 3_2:-57084105 None:intergenic
ATTATGACCTGAGTAGGAAG+AGG 0.578817 3_2:-57088265 None:intergenic
GCCTCTAGAAGAGGAAGTGG+AGG 0.582326 3_2:+57089097 Msa0412970:CDS
TTTGAATATGCCTCTAGAAG+AGG 0.586648 3_2:+57089088 Msa0412970:CDS
TCCAAGCTCCATTCCACGAG+GGG 0.587037 3_2:+57087845 Msa0412970:CDS
GTGGCTTCTTCTACGCGCTA+CGG 0.587510 3_2:-57084018 None:intergenic
CTTGCCGGTGATGCCGACGC+CGG 0.587627 3_2:+57083935 Msa0412970:exon
AACATATCAGAGAGGCGTCA+CGG 0.588259 3_2:+57089054 Msa0412970:CDS
GGCGGATATGGCGTGGAGAG+AGG 0.588673 3_2:-57084051 None:intergenic
CTAGAAGAGGAAGTGGAGGA+TGG 0.589139 3_2:+57089101 Msa0412970:CDS
AGGGAATTGGATTAGAACAG+TGG 0.591231 3_2:-57087906 None:intergenic
ATTTAATTTGCAGCTTAATG+GGG 0.592243 3_2:+57086340 Msa0412970:intron
AGGGGAGTAAGGGAAGGTGG+TGG 0.593014 3_2:-57084126 None:intergenic
GGGGTTGAGATTTGATGAAG+TGG 0.596851 3_2:+57084823 Msa0412970:CDS
GCTGATAATTATGTGAATGT+AGG 0.597746 3_2:+57086474 Msa0412970:CDS
GGTTGTTGGAGGTTTATGGT+GGG 0.597977 3_2:+57084978 Msa0412970:CDS
TTTCTTGGGCCAGATAGAGT+CGG 0.600021 3_2:+57088459 Msa0412970:CDS
TCCGAGGATATCTTTAGAAG+CGG 0.600536 3_2:+57088921 Msa0412970:CDS
TCAAGAAACACAACCGAACG+TGG 0.601412 3_2:-57088660 None:intergenic
TAGAGGATTAGGTTTGGCAA+AGG 0.604926 3_2:+57086557 Msa0412970:CDS
ATGGGAGTGAAGAGAAGATG+GGG 0.606256 3_2:+57084804 Msa0412970:CDS
CGAACCGTTTCAAACCGGTC+CGG 0.608717 3_2:-57084569 None:intergenic
ATCACTTGGACATGCTTCCG+AGG 0.608819 3_2:+57088905 Msa0412970:CDS
AGGGCACGGAAGTGGAGACG+AGG 0.609012 3_2:-57084146 None:intergenic
TAAGGGACATAGATGACTTG+TGG 0.609164 3_2:-57088074 None:intergenic
TCCTCCACTTCCTCTTCTAG+AGG 0.610974 3_2:-57089098 None:intergenic
GGGCACGGAAGTGGAGACGA+GGG 0.611222 3_2:-57084145 None:intergenic
TTGTTGTTTCAAGGTTAACA+AGG 0.611538 3_2:+57084957 Msa0412970:CDS
CAAATGTTAGAGCCGACACA+TGG 0.611870 3_2:+57088430 Msa0412970:CDS
TACCGAATCGAAACCCCTCG+TGG 0.612399 3_2:-57087858 None:intergenic
TACTCAGGTCATAATTCCGA+CGG 0.614483 3_2:+57088273 Msa0412970:CDS
TCATTATAATATGAGTTAGG+AGG 0.615381 3_2:+57089792 Msa0412970:three_prime_UTR
GCCAACTTTGAACACAGAAG+AGG 0.616374 3_2:-57088802 None:intergenic
ACGGACTATACTCTAAATCC+AGG 0.619287 3_2:+57085128 Msa0412970:CDS
GTCATCTCCGGAGGAGACGG+CGG 0.619596 3_2:-57084222 None:intergenic
ACCGCTTCTAAAGATATCCT+CGG 0.621802 3_2:-57088922 None:intergenic
TGGGCCACCGTCATCTCCGG+AGG 0.622580 3_2:-57084231 None:intergenic
AGCTATCTGGATGACGACGT+TGG 0.622926 3_2:-57084301 None:intergenic
TGAGAGAGTTGGAAACCGGT+GGG 0.623257 3_2:-57084250 None:intergenic
GGGTTGAGATTTGATGAAGT+GGG 0.623856 3_2:+57084824 Msa0412970:CDS
CGACAGAGAGTTCTAGGGCA+CGG 0.628714 3_2:-57084160 None:intergenic
TCTGCTACTCCTTCTATGGA+CGG 0.628746 3_2:+57085109 Msa0412970:CDS
CGTGCCCTAGAACTCTCTGT+CGG 0.630862 3_2:+57084161 Msa0412970:CDS
AAGAAAAGAAAACCATGTGT+CGG 0.632597 3_2:-57088442 None:intergenic
CTAAGATCTTCGGATTGCAG+AGG 0.640028 3_2:+57087743 Msa0412970:CDS
TTTGGGAACGACATATACAC+CGG 0.641414 3_2:+57088119 Msa0412970:CDS
CAAACAATGCATAATCTCAG+TGG 0.642184 3_2:+57088527 Msa0412970:CDS
TAGTTCAAAATCATGAAGCA+TGG 0.643778 3_2:+57089144 Msa0412970:CDS
TGTGCTGGAAATTGATTACG+AGG 0.645493 3_2:+57089292 Msa0412970:CDS
CGTTCCCAAAACCAAATCTG+TGG 0.646306 3_2:-57088106 None:intergenic
ATATAAAATATTCATAAGTG+AGG 0.648047 3_2:-57089752 None:intergenic
GACTCCGACAGAGAGTTCTA+GGG 0.649350 3_2:-57084165 None:intergenic
GTCGGAATTATGACCTGAGT+AGG 0.651946 3_2:-57088271 None:intergenic
GGCACGGAAGTGGAGACGAG+GGG 0.652636 3_2:-57084144 None:intergenic
TTCCAAGCTCCATTCCACGA+GGG 0.653377 3_2:+57087844 Msa0412970:CDS
TCTCGGAAACAGCTTTGTCG+AGG 0.654210 3_2:+57089388 Msa0412970:CDS
ATATTTCCCAAACATTAACA+GGG 0.659404 3_2:+57087821 Msa0412970:CDS
ACACTTTGTAGATCAGGCGA+CGG 0.669934 3_2:+57088393 Msa0412970:CDS
GGAACCAAAGATATTTCCCG+AGG 0.675037 3_2:+57088845 Msa0412970:CDS
TCAGGCGACGGAAAGCGCAG+TGG 0.676230 3_2:+57088405 Msa0412970:CDS
CGGCGCGTAGAGCGTTGGAG+GGG 0.682314 3_2:-57084085 None:intergenic
GTCTCCTCCGGAGATGACGG+TGG 0.685017 3_2:+57084227 Msa0412970:CDS
TGAAAGAATCTAGAAGATGG+TGG 0.685445 3_2:-57084509 None:intergenic
GCTTAGGAGGAAGACAGTCG+TGG 0.692506 3_2:+57088608 Msa0412970:CDS
GGTAAATTTCCATACTCACA+TGG 0.692604 3_2:+57088741 Msa0412970:CDS
AAGAATCTAGAAGATGGTGG+TGG 0.695136 3_2:-57084506 None:intergenic
GACAATGAAACATATCAGAG+AGG 0.702159 3_2:+57089046 Msa0412970:CDS
GGAGGGGAGAGAGAGTAAGG+CGG 0.705113 3_2:-57084069 None:intergenic
GTTCCAAGCTCCATTCCACG+AGG 0.732442 3_2:+57087843 Msa0412970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATAAATAATTGAA+GGG - chr3_2:57083827-57083846 None:intergenic 10.0%
!! TAAAAATGATAAATAATTGA+AGG - chr3_2:57083828-57083847 None:intergenic 10.0%
!!! TATGTTTTTTTTACTTTTAT+TGG + chr3_2:57086228-57086247 Msa0412970:intron 10.0%
!!! ATGTTTTTTTTACTTTTATT+GGG + chr3_2:57086229-57086248 Msa0412970:intron 10.0%
!!! TTTTTTTTTTTTTTTGAGTG+AGG - chr3_2:57083854-57083873 None:intergenic 15.0%
!! TCAATATTACATAAAAAAAC+CGG - chr3_2:57084548-57084567 None:intergenic 15.0%
!!! TTTTTTATGTAATATTGAAC+CGG + chr3_2:57084550-57084569 Msa0412970:CDS 15.0%
!! ACTATGTAGTATATATTATA+TGG - chr3_2:57085288-57085307 None:intergenic 15.0%
!!! TTAAGAGCATAATTTAATAA+TGG + chr3_2:57085671-57085690 Msa0412970:intron 15.0%
!! AAAATACTGAATATGAAATT+CGG + chr3_2:57086047-57086066 Msa0412970:intron 15.0%
!! CAATATATATAGATCATAAT+AGG - chr3_2:57086179-57086198 None:intergenic 15.0%
!! TAAAAATGAAACATAATGTT+AGG - chr3_2:57086602-57086621 None:intergenic 15.0%
!!! TTTTTTACTTTTACCATATT+AGG - chr3_2:57086744-57086763 None:intergenic 15.0%
!!! ATACTAAATAGGAAATATTT+TGG - chr3_2:57087002-57087021 None:intergenic 15.0%
!! TCATTGTTAAATAAATAGTA+CGG - chr3_2:57087676-57087695 None:intergenic 15.0%
!! ACAAAAAGAAAAAAAATCAT+GGG - chr3_2:57089632-57089651 None:intergenic 15.0%
!! ATATAAAATATTCATAAGTG+AGG - chr3_2:57089755-57089774 None:intergenic 15.0%
!!! AATTTTATATATATGCTTGC+CGG + chr3_2:57083920-57083939 Msa0412970:five_prime_UTR 20.0%
!!! GAAATTTTTGAGTTTGTTAT+TGG + chr3_2:57084779-57084798 Msa0412970:CDS 20.0%
!!! ATGTTTATACTAAGTTTTTG+AGG + chr3_2:57085035-57085054 Msa0412970:CDS 20.0%
!! TATGACAAAAAAACAAACAT+AGG - chr3_2:57085217-57085236 None:intergenic 20.0%
!!! TATGTTTGTTTTTTTGTCAT+AGG + chr3_2:57085216-57085235 Msa0412970:intron 20.0%
!!! ATGTTTGTTTTTTTGTCATA+GGG + chr3_2:57085217-57085236 Msa0412970:intron 20.0%
!!! AAAGAAGTGTTATATGATAT+TGG + chr3_2:57085352-57085371 Msa0412970:intron 20.0%
!!! TATGTTCTAAATTATTCAGA+TGG + chr3_2:57085493-57085512 Msa0412970:intron 20.0%
!! TCAAAATATGAATTGAAATC+TGG - chr3_2:57086009-57086028 None:intergenic 20.0%
!! TATGATCTATATATATTGCT+TGG + chr3_2:57086181-57086200 Msa0412970:intron 20.0%
!! TGCAAATTAAATAATGAACA+TGG - chr3_2:57086332-57086351 None:intergenic 20.0%
!!! TTATTTAATTTGCAGCTTAA+TGG + chr3_2:57086338-57086357 Msa0412970:intron 20.0%
!!! TATTTAATTTGCAGCTTAAT+GGG + chr3_2:57086339-57086358 Msa0412970:intron 20.0%
!!! TCTGACTAAATTATTTTAGT+GGG - chr3_2:57086697-57086716 None:intergenic 20.0%
!! TATCATGCATAATACTAAAT+AGG - chr3_2:57087013-57087032 None:intergenic 20.0%
!!! ATGCATGATATATATACTTT+TGG + chr3_2:57087023-57087042 Msa0412970:intron 20.0%
!!! TTTTCCAATATTAATCTCAA+AGG - chr3_2:57087216-57087235 None:intergenic 20.0%
!!! TTTTTGATCACTATATGTAT+TGG + chr3_2:57089531-57089550 Msa0412970:three_prime_UTR 20.0%
!! CACAAAAAGAAAAAAAATCA+TGG - chr3_2:57089633-57089652 None:intergenic 20.0%
!!! CATGATTTTTTTTCTTTTTG+TGG + chr3_2:57089631-57089650 Msa0412970:three_prime_UTR 20.0%
!!! ATTGAAGGGTTTTTTTGTTT+GGG - chr3_2:57083813-57083832 None:intergenic 25.0%
!!! AATTGAAGGGTTTTTTTGTT+TGG - chr3_2:57083814-57083833 None:intergenic 25.0%
! ATATTACATAAAAAAACCGG+AGG - chr3_2:57084545-57084564 None:intergenic 25.0%
!!! CTCTATAAACCTTTTTAAAG+CGG - chr3_2:57084687-57084706 None:intergenic 25.0%
!!! TTTGAGTTTGTTATTGGAAA+TGG + chr3_2:57084785-57084804 Msa0412970:CDS 25.0%
!!! TTGAGTTTGTTATTGGAAAT+GGG + chr3_2:57084786-57084805 Msa0412970:CDS 25.0%
!!! CCAAATCTTTTTCAACATTA+GGG - chr3_2:57085066-57085085 None:intergenic 25.0%
!!! TCCAAATCTTTTTCAACATT+AGG - chr3_2:57085067-57085086 None:intergenic 25.0%
! TTAGAGTGATAAAAAAGAGT+TGG - chr3_2:57085538-57085557 None:intergenic 25.0%
! AATAATGGTCATGATTCAAT+TGG + chr3_2:57085686-57085705 Msa0412970:intron 25.0%
! ATTATGAAACATTGCTCTAA+TGG + chr3_2:57085787-57085806 Msa0412970:intron 25.0%
! TCATAACACCAAAAAAGAAT+AGG - chr3_2:57085933-57085952 None:intergenic 25.0%
! AATAGGCTATAGAATTTGAT+AGG - chr3_2:57086162-57086181 None:intergenic 25.0%
!! GCTTGGAATATATTTACTTT+TGG + chr3_2:57086198-57086217 Msa0412970:intron 25.0%
!!! ATTTAATTTGCAGCTTAATG+GGG + chr3_2:57086340-57086359 Msa0412970:intron 25.0%
!!! CTCTGACTAAATTATTTTAG+TGG - chr3_2:57086698-57086717 None:intergenic 25.0%
! CACTAAAATAATTTAGTCAG+AGG + chr3_2:57086696-57086715 Msa0412970:intron 25.0%
! TAAGAATGAAAGTAGCAATA+TGG + chr3_2:57086782-57086801 Msa0412970:intron 25.0%
! TTATATTTCCATGTGTACTT+TGG + chr3_2:57086901-57086920 Msa0412970:intron 25.0%
! TATTTGCATTTGTATATGGT+AGG - chr3_2:57086928-57086947 None:intergenic 25.0%
! GCATTATTTGCATTTGTATA+TGG - chr3_2:57086932-57086951 None:intergenic 25.0%
! AATGCAAATAATGCTATTAG+TGG + chr3_2:57086938-57086957 Msa0412970:intron 25.0%
!!! TAGGAAATATTTTGGCTTTA+TGG - chr3_2:57086994-57087013 None:intergenic 25.0%
!!! GCTATTTTCATAAGATATCT+TGG + chr3_2:57087062-57087081 Msa0412970:intron 25.0%
!!! ACTTCCTTTGAGATTAATAT+TGG + chr3_2:57087209-57087228 Msa0412970:intron 25.0%
! CAAATTGAAACAATGAAGTA+TGG - chr3_2:57087650-57087669 None:intergenic 25.0%
! TACTTCATTGTTTCAATTTG+TGG + chr3_2:57087650-57087669 Msa0412970:intron 25.0%
! AATATTTCCCAAACATTAAC+AGG + chr3_2:57087820-57087839 Msa0412970:CDS 25.0%
! ATATTTCCCAAACATTAACA+GGG + chr3_2:57087821-57087840 Msa0412970:CDS 25.0%
!!! ACATCGAATTTTGAAACTTT+CGG - chr3_2:57088036-57088055 None:intergenic 25.0%
! TTCTTATGATCACTTAGTTT+CGG - chr3_2:57088165-57088184 None:intergenic 25.0%
! AACTTCTTATCGAAAAAGTT+TGG + chr3_2:57088331-57088350 Msa0412970:CDS 25.0%
! TGTCAAATTGAATTATCACT+TGG + chr3_2:57088891-57088910 Msa0412970:CDS 25.0%
! GCAAGTAAATCAAAATTGAA+TGG - chr3_2:57089215-57089234 None:intergenic 25.0%
! AAACAATTTCAAACACCATT+TGG + chr3_2:57089260-57089279 Msa0412970:CDS 25.0%
!!! TAAATGTGAAAGCATTTTTG+TGG + chr3_2:57089457-57089476 Msa0412970:CDS 25.0%
!! ATTTGTATAATGTAGCTTGT+AGG + chr3_2:57089563-57089582 Msa0412970:three_prime_UTR 25.0%
!! TTTGTATAATGTAGCTTGTA+GGG + chr3_2:57089564-57089583 Msa0412970:three_prime_UTR 25.0%
! TTTATATTCAAACGAAGTGA+AGG + chr3_2:57089768-57089787 Msa0412970:three_prime_UTR 25.0%
! GGATCATTATAATATGAGTT+AGG + chr3_2:57089789-57089808 Msa0412970:three_prime_UTR 25.0%
! TCATTATAATATGAGTTAGG+AGG + chr3_2:57089792-57089811 Msa0412970:three_prime_UTR 25.0%
ATGGGAAAAAATTTAGTGAG+AGG - chr3_2:57083728-57083747 None:intergenic 30.0%
! TTGATGATCCTATAGTTAGT+AGG + chr3_2:57084420-57084439 Msa0412970:CDS 30.0%
TGATGATCCTATAGTTAGTA+GGG + chr3_2:57084421-57084440 Msa0412970:CDS 30.0%
GTTCGATGAAAATTCAAGAA+GGG + chr3_2:57084592-57084611 Msa0412970:CDS 30.0%
! TAAGAGAAATCCTCTTTTGA+TGG + chr3_2:57084646-57084665 Msa0412970:CDS 30.0%
! AAGAGAAATCCTCTTTTGAT+GGG + chr3_2:57084647-57084666 Msa0412970:CDS 30.0%
!! ATGCAAAAACCGCTTTAAAA+AGG + chr3_2:57084675-57084694 Msa0412970:CDS 30.0%
TTTATAGAGTTAGCTCAAAG+TGG + chr3_2:57084698-57084717 Msa0412970:CDS 30.0%
! TTTTTACCTAATGAGCTTGA+TGG + chr3_2:57084731-57084750 Msa0412970:CDS 30.0%
! TTTTACCTAATGAGCTTGAT+GGG + chr3_2:57084732-57084751 Msa0412970:CDS 30.0%
GTTGAACAAAATTTACATGC+TGG + chr3_2:57084854-57084873 Msa0412970:CDS 30.0%
! GATGATGATGTTATTGATGA+TGG + chr3_2:57084926-57084945 Msa0412970:CDS 30.0%
!! TTGTTGTTTCAAGGTTAACA+AGG + chr3_2:57084957-57084976 Msa0412970:CDS 30.0%
CCCTAATGTTGAAAAAGATT+TGG + chr3_2:57085063-57085082 Msa0412970:CDS 30.0%
AGAAAAAAGAGAAACATACC+TGG - chr3_2:57085149-57085168 None:intergenic 30.0%
! TTCCTTTTCTGTTTCCTTAT+TGG + chr3_2:57085169-57085188 Msa0412970:intron 30.0%
AACCAATAAGGAAACAGAAA+AGG - chr3_2:57085174-57085193 None:intergenic 30.0%
TGACATGTCAATATGATCAT+TGG + chr3_2:57085425-57085444 Msa0412970:intron 30.0%
!!! CTTGTCTTTAACTTGTTTTG+TGG + chr3_2:57085465-57085484 Msa0412970:intron 30.0%
!!! TATTCAGATGGTTTTGTCTT+TGG + chr3_2:57085505-57085524 Msa0412970:intron 30.0%
TTGAATTATAATCTGACTCC+TGG + chr3_2:57085617-57085636 Msa0412970:intron 30.0%
AAAAGCTTATAGAAAGTTCC+AGG - chr3_2:57085638-57085657 None:intergenic 30.0%
GCAGGTAGAAATAACATTAA+TGG - chr3_2:57085869-57085888 None:intergenic 30.0%
AACACCAAAAAAGAATAGGT+GGG - chr3_2:57085929-57085948 None:intergenic 30.0%
TAACACCAAAAAAGAATAGG+TGG - chr3_2:57085930-57085949 None:intergenic 30.0%
TACACGAAATGAACTACATT+TGG - chr3_2:57086097-57086116 None:intergenic 30.0%
GATAGGTCAAAATTGAATCT+AGG - chr3_2:57086145-57086164 None:intergenic 30.0%
!! TTTGGATTTCTGAAATCAGA+AGG - chr3_2:57086399-57086418 None:intergenic 30.0%
!! AGAGTTAAAGATGATGGATT+TGG - chr3_2:57086417-57086436 None:intergenic 30.0%
TCACAAAGAGTTAAAGATGA+TGG - chr3_2:57086423-57086442 None:intergenic 30.0%
GCTGATAATTATGTGAATGT+AGG + chr3_2:57086474-57086493 Msa0412970:CDS 30.0%
AAGTTTACCTTGGTTACAAA+AGG + chr3_2:57086518-57086537 Msa0412970:CDS 30.0%
! ACATTAACCTTTTGTAACCA+AGG - chr3_2:57086528-57086547 None:intergenic 30.0%
TTGGTTACAAAAGGTTAATG+TGG + chr3_2:57086527-57086546 Msa0412970:CDS 30.0%
!! TGCTACTTTCATTCTTACTT+AGG - chr3_2:57086779-57086798 None:intergenic 30.0%
! GATGTTTCTGAAAGTTGATT+AGG + chr3_2:57086866-57086885 Msa0412970:intron 30.0%
AAGATATCTTGGAGAACTTA+TGG + chr3_2:57087073-57087092 Msa0412970:intron 30.0%
GACAACTAGAAAGCAATTAT+GGG - chr3_2:57087160-57087179 None:intergenic 30.0%
TGACAACTAGAAAGCAATTA+TGG - chr3_2:57087161-57087180 None:intergenic 30.0%
TTAAAATATCTTGTGTAGGC+AGG - chr3_2:57087187-57087206 None:intergenic 30.0%
! TGCCTACACAAGATATTTTA+AGG + chr3_2:57087186-57087205 Msa0412970:intron 30.0%
GTCCTTAAAATATCTTGTGT+AGG - chr3_2:57087191-57087210 None:intergenic 30.0%
TACTTTCTCTTGTCAAAAGT+TGG + chr3_2:57087338-57087357 Msa0412970:intron 30.0%
ACTTTCTCTTGTCAAAAGTT+GGG + chr3_2:57087339-57087358 Msa0412970:intron 30.0%
TAGATCCAATTTACCAAAGT+CGG - chr3_2:57087449-57087468 None:intergenic 30.0%
AAACAAAGAGAGAAAACACA+CGG - chr3_2:57087572-57087591 None:intergenic 30.0%
TGACAACAATGTTAATCAAG+AGG - chr3_2:57087604-57087623 None:intergenic 30.0%
CAAACTTGTGTTATCTTCAT+TGG - chr3_2:57087719-57087738 None:intergenic 30.0%
AGTTTGAATGCTAAGATCTT+CGG + chr3_2:57087733-57087752 Msa0412970:CDS 30.0%
!! GTTTGGGAAATATTGATTTC+AGG - chr3_2:57087814-57087833 None:intergenic 30.0%
! TAGAACAGTGGATTTCATTA+AGG - chr3_2:57087897-57087916 None:intergenic 30.0%
TGTAACTCTTTAGACATGTA+GGG - chr3_2:57087928-57087947 None:intergenic 30.0%
TTGTAACTCTTTAGACATGT+AGG - chr3_2:57087929-57087948 None:intergenic 30.0%
TGAAAATGGTAACATCTGTT+TGG - chr3_2:57087965-57087984 None:intergenic 30.0%
GTATCAAAAGGTTGTGAAAA+TGG - chr3_2:57087979-57087998 None:intergenic 30.0%
! TACATGTTCAGCTTTATCTT+TGG - chr3_2:57088013-57088032 None:intergenic 30.0%
TCTTATGATCACTTAGTTTC+GGG - chr3_2:57088164-57088183 None:intergenic 30.0%
! AACCATTTCAAATTTTCCGT+CGG - chr3_2:57088292-57088311 None:intergenic 30.0%
TTCTTATCGAAAAAGTTTGG+TGG + chr3_2:57088334-57088353 Msa0412970:CDS 30.0%
ATTATGACACTTTGTAGATC+AGG + chr3_2:57088387-57088406 Msa0412970:CDS 30.0%
AAGAAAAGAAAACCATGTGT+CGG - chr3_2:57088445-57088464 None:intergenic 30.0%
! ACACATGGTTTTCTTTTCTT+GGG + chr3_2:57088445-57088464 Msa0412970:CDS 30.0%
TTGTTACAAGCAATAAGAAC+AGG + chr3_2:57088720-57088739 Msa0412970:CDS 30.0%
!!! TTTGACATCTTTTAGCTTCA+AGG - chr3_2:57088878-57088897 None:intergenic 30.0%
TAGTTCAAAATCATGAAGCA+TGG + chr3_2:57089144-57089163 Msa0412970:CDS 30.0%
AGCACAAAATTTGATCCAAA+TGG - chr3_2:57089278-57089297 None:intergenic 30.0%
! ATTTGGATCAAATTTTGTGC+TGG + chr3_2:57089277-57089296 Msa0412970:CDS 30.0%
AGCTGAGTATGTAATGAAAT+TGG + chr3_2:57089433-57089452 Msa0412970:CDS 30.0%
! TAGTTCAAGTTAATTCTAGC+TGG - chr3_2:57089509-57089528 None:intergenic 30.0%
! TCGGTAGTTATAGCATTTTA+AGG + chr3_2:57089597-57089616 Msa0412970:three_prime_UTR 30.0%
! GTGAATCTGTGATTTTCTTA+TGG + chr3_2:57089667-57089686 Msa0412970:three_prime_UTR 30.0%
TTCATTCCATCAGAATAATC+AGG - chr3_2:57089722-57089741 None:intergenic 30.0%
TAATATGAGTTAGGAGGAAA+AGG + chr3_2:57089798-57089817 Msa0412970:three_prime_UTR 30.0%
TAATGCAAGTGAGTGTGTTT+GGG - chr3_2:57083752-57083771 None:intergenic 35.0%
TGTAGTAAATGGAAGCTATC+TGG - chr3_2:57084317-57084336 None:intergenic 35.0%
GCTGCATTATCTGTAGTAAA+TGG - chr3_2:57084328-57084347 None:intergenic 35.0%
GCAAAAACCCTACTAACTAT+AGG - chr3_2:57084431-57084450 None:intergenic 35.0%
TGAAAGAATCTAGAAGATGG+TGG - chr3_2:57084512-57084531 None:intergenic 35.0%
TTACATAAAAAAACCGGAGG+AGG - chr3_2:57084542-57084561 None:intergenic 35.0%
TATGTAATATTGAACCGGAC+CGG + chr3_2:57084555-57084574 Msa0412970:CDS 35.0%
GGTTCGATGAAAATTCAAGA+AGG + chr3_2:57084591-57084610 Msa0412970:CDS 35.0%
TTAGCTCAAAGTGGAAAAGT+TGG + chr3_2:57084707-57084726 Msa0412970:CDS 35.0%
TTTAACCCATCAAGCTCATT+AGG - chr3_2:57084740-57084759 None:intergenic 35.0%
!!! CTGGTGTTGTTCTATGTTTT+GGG + chr3_2:57084873-57084892 Msa0412970:CDS 35.0%
!!! TGGTGTTGTTCTATGTTTTG+GGG + chr3_2:57084874-57084893 Msa0412970:CDS 35.0%
!! GTGTTGTGTTTGTTGTTTCA+AGG + chr3_2:57084948-57084967 Msa0412970:CDS 35.0%
TTCAAGGTTAACAAGGTTGT+TGG + chr3_2:57084964-57084983 Msa0412970:CDS 35.0%
!! TTCTGTTTCCTTATTGGTTC+TGG + chr3_2:57085175-57085194 Msa0412970:intron 35.0%
AGTACAAACCAGAACCAATA+AGG - chr3_2:57085186-57085205 None:intergenic 35.0%
TGGTTATTGTGCATAGAGAA+AGG + chr3_2:57085569-57085588 Msa0412970:intron 35.0%
TATTGTGCATAGAGAAAGGA+AGG + chr3_2:57085573-57085592 Msa0412970:intron 35.0%
!! GGTCATGATTCAATTGGTTT+TGG + chr3_2:57085692-57085711 Msa0412970:intron 35.0%
AGAACATTGCAGCAAAACAA+TGG - chr3_2:57085742-57085761 None:intergenic 35.0%
! TGCTGCAATGTTCTATTTTC+TGG + chr3_2:57085748-57085767 Msa0412970:intron 35.0%
! GCTGCAATGTTCTATTTTCT+GGG + chr3_2:57085749-57085768 Msa0412970:intron 35.0%
AGCATTTATCAAAAGACTGC+AGG - chr3_2:57085887-57085906 None:intergenic 35.0%
AAAAAAGAATAGGTGGGTCA+GGG - chr3_2:57085923-57085942 None:intergenic 35.0%
!! ATTTCTGAAATCAGAAGGTG+TGG - chr3_2:57086394-57086413 None:intergenic 35.0%
!! CTTGTTGATGATGAAGAAGA+AGG - chr3_2:57086501-57086520 None:intergenic 35.0%
CATCATCAACAAGTTTACCT+TGG + chr3_2:57086508-57086527 Msa0412970:CDS 35.0%
GTTAATGTGGATTCAGATAG+AGG + chr3_2:57086540-57086559 Msa0412970:CDS 35.0%
TTCAGATAGAGGATTAGGTT+TGG + chr3_2:57086551-57086570 Msa0412970:CDS 35.0%
ATAATGCTTCTGGCCTAATA+TGG + chr3_2:57086728-57086747 Msa0412970:intron 35.0%
CATATCTTTGGTATAGGCAT+AGG - chr3_2:57086827-57086846 None:intergenic 35.0%
AGTAGGCATATCTTTGGTAT+AGG - chr3_2:57086833-57086852 None:intergenic 35.0%
TAGTTCAGTAGGCATATCTT+TGG - chr3_2:57086839-57086858 None:intergenic 35.0%
ATATGCCTACTGAACTAATC+TGG + chr3_2:57086842-57086861 Msa0412970:intron 35.0%
TTTGACGTAGTCACATGATT+TGG + chr3_2:57087394-57087413 Msa0412970:intron 35.0%
! GAGGATTTTCTGATTATGGT+CGG - chr3_2:57087498-57087517 None:intergenic 35.0%
! TCTGGAGGATTTTCTGATTA+TGG - chr3_2:57087502-57087521 None:intergenic 35.0%
TTGGAACCCTGTTAATGTTT+GGG - chr3_2:57087830-57087849 None:intergenic 35.0%
TCTTTAGACATGTAGGGAAT+TGG - chr3_2:57087922-57087941 None:intergenic 35.0%
AACATCTGTTTGGATGGAAA+TGG - chr3_2:57087955-57087974 None:intergenic 35.0%
AATGGTAACATCTGTTTGGA+TGG - chr3_2:57087961-57087980 None:intergenic 35.0%
GCACTAAGAGTAGTATCAAA+AGG - chr3_2:57087991-57088010 None:intergenic 35.0%
! ACATAGATGACTTGTGGTTA+AGG - chr3_2:57088071-57088090 None:intergenic 35.0%
CTTATGATCACTTAGTTTCG+GGG - chr3_2:57088163-57088182 None:intergenic 35.0%
TTCCGACGGAAAATTTGAAA+TGG + chr3_2:57088287-57088306 Msa0412970:CDS 35.0%
! GACACATGGTTTTCTTTTCT+TGG + chr3_2:57088444-57088463 Msa0412970:CDS 35.0%
! TTTCTTTTTCCGACTCTATC+TGG - chr3_2:57088471-57088490 None:intergenic 35.0%
GTACTTGCAGAAACTCTATT+TGG + chr3_2:57088501-57088520 Msa0412970:CDS 35.0%
CAAACAATGCATAATCTCAG+TGG + chr3_2:57088527-57088546 Msa0412970:CDS 35.0%
CATTCGAAAATCGAGTTCAA+TGG - chr3_2:57088579-57088598 None:intergenic 35.0%
GGTAAATTTCCATACTCACA+TGG + chr3_2:57088741-57088760 Msa0412970:CDS 35.0%
AATTTCCATACTCACATGGT+AGG + chr3_2:57088745-57088764 Msa0412970:CDS 35.0%
ATTTCCATACTCACATGGTA+GGG + chr3_2:57088746-57088765 Msa0412970:CDS 35.0%
!!! CGGCTTTTTTGATATGGAAA+AGG + chr3_2:57088824-57088843 Msa0412970:CDS 35.0%
!!! CTTGCTAGCTACTTTTTCAT+TGG - chr3_2:57089027-57089046 None:intergenic 35.0%
GACAATGAAACATATCAGAG+AGG + chr3_2:57089046-57089065 Msa0412970:CDS 35.0%
! TTTGAATATGCCTCTAGAAG+AGG + chr3_2:57089088-57089107 Msa0412970:CDS 35.0%
GATTTCCTTGCACAAATTGA+TGG + chr3_2:57089173-57089192 Msa0412970:CDS 35.0%
! CTTTTCCATCAATTTGTGCA+AGG - chr3_2:57089181-57089200 None:intergenic 35.0%
TGCACAAATTGATGGAAAAG+TGG + chr3_2:57089181-57089200 Msa0412970:CDS 35.0%
AGAAAAAAGCAGTGGAAGAT+TGG + chr3_2:57089354-57089373 Msa0412970:CDS 35.0%
GATTGGATTGAACATGTTCT+CGG + chr3_2:57089371-57089390 Msa0412970:CDS 35.0%
! TCAAGTTAATTCTAGCTGGA+AGG - chr3_2:57089505-57089524 None:intergenic 35.0%
CTTGTAGGGTATATAGCATT+CGG + chr3_2:57089578-57089597 Msa0412970:three_prime_UTR 35.0%
ATCAGAATAATCAGGAGAAC+TGG - chr3_2:57089714-57089733 None:intergenic 35.0%
AGTTCTCCTGATTATTCTGA+TGG + chr3_2:57089713-57089732 Msa0412970:three_prime_UTR 35.0%
GAAAGTGAGAAGGATGAAGA+TGG - chr3_2:57083701-57083720 None:intergenic 40.0%
AAGTGAGTGTGTTTGGGTAT+GGG - chr3_2:57083746-57083765 None:intergenic 40.0%
CTAATGCAAGTGAGTGTGTT+TGG - chr3_2:57083753-57083772 None:intergenic 40.0%
!! GTTTGCTTGAGAGCGTTTAA+TGG - chr3_2:57084282-57084301 None:intergenic 40.0%
AAAACGACGCAGTTTGATTC+TGG - chr3_2:57084364-57084383 None:intergenic 40.0%
! AAGAATCTAGAAGATGGTGG+TGG - chr3_2:57084509-57084528 None:intergenic 40.0%
CGGTGAAAGAATCTAGAAGA+TGG - chr3_2:57084515-57084534 None:intergenic 40.0%
!!! AGGGTTGTTGATGTTTTAGC+TGG + chr3_2:57084611-57084630 Msa0412970:CDS 40.0%
!!! GGGTTGTTGATGTTTTAGCT+GGG + chr3_2:57084612-57084631 Msa0412970:CDS 40.0%
!!! ATGTTTTAGCTGGGAAGAGT+GGG + chr3_2:57084621-57084640 Msa0412970:CDS 40.0%
GCATAAACACCCATCAAAAG+AGG - chr3_2:57084659-57084678 None:intergenic 40.0%
AAATGGGAGTGAAGAGAAGA+TGG + chr3_2:57084802-57084821 Msa0412970:CDS 40.0%
AATGGGAGTGAAGAGAAGAT+GGG + chr3_2:57084803-57084822 Msa0412970:CDS 40.0%
GGGTTGAGATTTGATGAAGT+GGG + chr3_2:57084824-57084843 Msa0412970:CDS 40.0%
!!! GCTGGTGTTGTTCTATGTTT+TGG + chr3_2:57084872-57084891 Msa0412970:CDS 40.0%
!!! TCTATGTTTTGGGGAGATTG+AGG + chr3_2:57084883-57084902 Msa0412970:CDS 40.0%
AAGGTTAACAAGGTTGTTGG+AGG + chr3_2:57084967-57084986 Msa0412970:CDS 40.0%
ACAAGGTTGTTGGAGGTTTA+TGG + chr3_2:57084974-57084993 Msa0412970:CDS 40.0%
! AGGTTTATGGTGGGAAGATT+TGG + chr3_2:57084987-57085006 Msa0412970:CDS 40.0%
! TTATGGTGGGAAGATTTGGT+TGG + chr3_2:57084991-57085010 Msa0412970:CDS 40.0%
! ACGGACTATACTCTAAATCC+AGG + chr3_2:57085128-57085147 Msa0412970:CDS 40.0%
!! TCACTCTAAAGCTGTTTGCT+TGG + chr3_2:57085549-57085568 Msa0412970:intron 40.0%
! AACATTGCTCTAATGGATGC+TGG + chr3_2:57085794-57085813 Msa0412970:intron 40.0%
AAAAAGAATAGGTGGGTCAG+GGG - chr3_2:57085922-57085941 None:intergenic 40.0%
CAAAAAAGAATAGGTGGGTC+AGG - chr3_2:57085924-57085943 None:intergenic 40.0%
!!! CTGACCCACCTATTCTTTTT+TGG + chr3_2:57085922-57085941 Msa0412970:intron 40.0%
! ATGGGGTCTTTTGTTCCATT+TGG + chr3_2:57086357-57086376 Msa0412970:CDS 40.0%
GTGGATTCAGATAGAGGATT+AGG + chr3_2:57086546-57086565 Msa0412970:CDS 40.0%
TAGAGGATTAGGTTTGGCAA+AGG + chr3_2:57086557-57086576 Msa0412970:CDS 40.0%
GTAAGCTGCAATAATGCTTC+TGG + chr3_2:57086718-57086737 Msa0412970:intron 40.0%
! CATCACCAGATTAGTTCAGT+AGG - chr3_2:57086850-57086869 None:intergenic 40.0%
! ATAATGCTATTAGTGGACCC+AGG + chr3_2:57086945-57086964 Msa0412970:intron 40.0%
CTAGAAAGCAATTATGGGAG+TGG - chr3_2:57087155-57087174 None:intergenic 40.0%
TCTTGTCAAAAGTTGGGATC+TGG + chr3_2:57087345-57087364 Msa0412970:intron 40.0%
GTGTTCCGACTTTGGTAAAT+TGG + chr3_2:57087441-57087460 Msa0412970:intron 40.0%
AAATCCTCCAGACTAGTGAA+TGG + chr3_2:57087510-57087529 Msa0412970:intron 40.0%
CAATCAACCATTCACTAGTC+TGG - chr3_2:57087520-57087539 None:intergenic 40.0%
! GGCTCAATGGATTTGGATTT+CGG - chr3_2:57087551-57087570 None:intergenic 40.0%
CTTGGAACCCTGTTAATGTT+TGG - chr3_2:57087831-57087850 None:intergenic 40.0%
! AGGGAATTGGATTAGAACAG+TGG - chr3_2:57087909-57087928 None:intergenic 40.0%
! GATGACTTGTGGTTAAGGAA+AGG - chr3_2:57088066-57088085 None:intergenic 40.0%
TAAGGGACATAGATGACTTG+TGG - chr3_2:57088077-57088096 None:intergenic 40.0%
AAAACCAAATCTGTGGTGAC+GGG - chr3_2:57088102-57088121 None:intergenic 40.0%
CAAAACCAAATCTGTGGTGA+CGG - chr3_2:57088103-57088122 None:intergenic 40.0%
!!! GTCACCACAGATTTGGTTTT+GGG + chr3_2:57088102-57088121 Msa0412970:CDS 40.0%
TTTGGGAACGACATATACAC+CGG + chr3_2:57088119-57088138 Msa0412970:CDS 40.0%
AGGAAGAGGATCTAGCAATT+TGG - chr3_2:57088254-57088273 None:intergenic 40.0%
ATTATGACCTGAGTAGGAAG+AGG - chr3_2:57088268-57088287 None:intergenic 40.0%
TACTCAGGTCATAATTCCGA+CGG + chr3_2:57088273-57088292 Msa0412970:CDS 40.0%
! AAAAGTTTGGTGGCAAGATG+AGG + chr3_2:57088344-57088363 Msa0412970:CDS 40.0%
! CTCAGTGGATTTAAGCTCTA+AGG + chr3_2:57088542-57088561 Msa0412970:CDS 40.0%
! ACAGTCGTGGATTATATTGC+TGG + chr3_2:57088621-57088640 Msa0412970:CDS 40.0%
GTTGAGTAAAAAGCCACGTT+CGG + chr3_2:57088647-57088666 Msa0412970:CDS 40.0%
ATTTCCCTACCATGTGAGTA+TGG - chr3_2:57088753-57088772 None:intergenic 40.0%
ACCTCTTCTGTGTTCAAAGT+TGG + chr3_2:57088801-57088820 Msa0412970:CDS 40.0%
TCTTCTGTGTTCAAAGTTGG+CGG + chr3_2:57088804-57088823 Msa0412970:CDS 40.0%
!!! AGTTGGCGGCTTTTTTGATA+TGG + chr3_2:57088818-57088837 Msa0412970:CDS 40.0%
CTTTCCTCGGGAAATATCTT+TGG - chr3_2:57088852-57088871 None:intergenic 40.0%
AGCTTCAAGGATTCTTTCCT+CGG - chr3_2:57088865-57088884 None:intergenic 40.0%
! TCCGAGGATATCTTTAGAAG+CGG + chr3_2:57088921-57088940 Msa0412970:CDS 40.0%
! ACCGCTTCTAAAGATATCCT+CGG - chr3_2:57088925-57088944 None:intergenic 40.0%
AAGCGGTAGCAAAAATGTGA+GGG + chr3_2:57088938-57088957 Msa0412970:CDS 40.0%
GTGAGGGTTTCAAAGAGAAA+TGG + chr3_2:57088954-57088973 Msa0412970:CDS 40.0%
TGTGCTGGAAATTGATTACG+AGG + chr3_2:57089292-57089311 Msa0412970:CDS 40.0%
GTCAGACAAGAAAAAAGCAG+TGG + chr3_2:57089346-57089365 Msa0412970:CDS 40.0%
GAAGATGGTGAAGAGAAGGA+TGG - chr3_2:57083686-57083705 None:intergenic 45.0%
GGATGAAGATGGTGAAGAGA+AGG - chr3_2:57083690-57083709 None:intergenic 45.0%
GAGAGGAAGAGAAAGTGAGA+AGG - chr3_2:57083711-57083730 None:intergenic 45.0%
CAAGTGAGTGTGTTTGGGTA+TGG - chr3_2:57083747-57083766 None:intergenic 45.0%
! AGTAGGGTTTTTGCAGAAGC+TGG + chr3_2:57084437-57084456 Msa0412970:CDS 45.0%
!! AATCTAGAAGATGGTGGTGG+TGG - chr3_2:57084506-57084525 None:intergenic 45.0%
AAAAAACCGGAGGAGGAGAA+CGG - chr3_2:57084535-57084554 None:intergenic 45.0%
!!! GATGTTTTAGCTGGGAAGAG+TGG + chr3_2:57084620-57084639 Msa0412970:CDS 45.0%
ATGGGAGTGAAGAGAAGATG+GGG + chr3_2:57084804-57084823 Msa0412970:CDS 45.0%
GGGGTTGAGATTTGATGAAG+TGG + chr3_2:57084823-57084842 Msa0412970:CDS 45.0%
AGGTTGTTGGAGGTTTATGG+TGG + chr3_2:57084977-57084996 Msa0412970:CDS 45.0%
GGTTGTTGGAGGTTTATGGT+GGG + chr3_2:57084978-57084997 Msa0412970:CDS 45.0%
GACATCTGCTACTCCTTCTA+TGG + chr3_2:57085105-57085124 Msa0412970:CDS 45.0%
TCTGCTACTCCTTCTATGGA+CGG + chr3_2:57085109-57085128 Msa0412970:CDS 45.0%
GAGTATAGTCCGTCCATAGA+AGG - chr3_2:57085121-57085140 None:intergenic 45.0%
ACTGTGTGATCTTGATCGGA+CGG - chr3_2:57085986-57086005 None:intergenic 45.0%
CTGGACTGTGTGATCTTGAT+CGG - chr3_2:57085990-57086009 None:intergenic 45.0%
CACCTTAGCTTCTGACAGTT+TGG + chr3_2:57086285-57086304 Msa0412970:intron 45.0%
CACCAAACTGTCAGAAGCTA+AGG - chr3_2:57086290-57086309 None:intergenic 45.0%
! GGGTCTTTTGTTCCATTTGG+TGG + chr3_2:57086360-57086379 Msa0412970:CDS 45.0%
GTGGAAAAGAAGCCACCAAA+TGG - chr3_2:57086375-57086394 None:intergenic 45.0%
GGTATAGGCATAGGCATTCA+AGG - chr3_2:57086818-57086837 None:intergenic 45.0%
TGGTAGGACCAAAGTACACA+TGG - chr3_2:57086912-57086931 None:intergenic 45.0%
TACTGCCTAGAGGTAAACCT+GGG - chr3_2:57086965-57086984 None:intergenic 45.0%
! AGTCACATGATTTGGACCGT+TGG + chr3_2:57087402-57087421 Msa0412970:intron 45.0%
TTGGACCGTTGGATGAAGAT+CGG + chr3_2:57087413-57087432 Msa0412970:intron 45.0%
AGAGTCCGATCTTCATCCAA+CGG - chr3_2:57087421-57087440 None:intergenic 45.0%
! TCAACCATTCACTAGTCTGG+AGG - chr3_2:57087517-57087536 None:intergenic 45.0%
! AACACACGGCTCAATGGATT+TGG - chr3_2:57087558-57087577 None:intergenic 45.0%
AGAGAAAACACACGGCTCAA+TGG - chr3_2:57087564-57087583 None:intergenic 45.0%
CTAAGATCTTCGGATTGCAG+AGG + chr3_2:57087743-57087762 Msa0412970:CDS 45.0%
TCTTCGGATTGCAGAGGAAA+TGG + chr3_2:57087749-57087768 Msa0412970:CDS 45.0%
!! ATCTGTGGTGACGGGATTAA+GGG - chr3_2:57088094-57088113 None:intergenic 45.0%
!! AATCTGTGGTGACGGGATTA+AGG - chr3_2:57088095-57088114 None:intergenic 45.0%
TAATCCCGTCACCACAGATT+TGG + chr3_2:57088095-57088114 Msa0412970:CDS 45.0%
!! CGTCACCACAGATTTGGTTT+TGG + chr3_2:57088101-57088120 Msa0412970:CDS 45.0%
CGTTCCCAAAACCAAATCTG+TGG - chr3_2:57088109-57088128 None:intergenic 45.0%
! GTATCTGGCTCATGAGTAAC+CGG - chr3_2:57088141-57088160 None:intergenic 45.0%
! TCACTTAGTTTCGGGGTATC+TGG - chr3_2:57088156-57088175 None:intergenic 45.0%
! GAAGCATCTTCAGCACTTGT+CGG + chr3_2:57088182-57088201 Msa0412970:CDS 45.0%
GTCGGAATTATGACCTGAGT+AGG - chr3_2:57088274-57088293 None:intergenic 45.0%
ACACTTTGTAGATCAGGCGA+CGG + chr3_2:57088393-57088412 Msa0412970:CDS 45.0%
CAAATGTTAGAGCCGACACA+TGG + chr3_2:57088430-57088449 Msa0412970:CDS 45.0%
TTTCTTGGGCCAGATAGAGT+CGG + chr3_2:57088459-57088478 Msa0412970:CDS 45.0%
TCGAATGTCACGATGTGCTT+AGG + chr3_2:57088592-57088611 Msa0412970:CDS 45.0%
AATGTCACGATGTGCTTAGG+AGG + chr3_2:57088595-57088614 Msa0412970:CDS 45.0%
GCCAACTTTGAACACAGAAG+AGG - chr3_2:57088805-57088824 None:intergenic 45.0%
GGAACCAAAGATATTTCCCG+AGG + chr3_2:57088845-57088864 Msa0412970:CDS 45.0%
GCTTCAAGGATTCTTTCCTC+GGG - chr3_2:57088864-57088883 None:intergenic 45.0%
GAAGCGGTAGCAAAAATGTG+AGG + chr3_2:57088937-57088956 Msa0412970:CDS 45.0%
!! AACATATCAGAGAGGCGTCA+CGG + chr3_2:57089054-57089073 Msa0412970:CDS 45.0%
! TATGCCTCTAGAAGAGGAAG+TGG + chr3_2:57089094-57089113 Msa0412970:CDS 45.0%
TTTGTGGAAGAGCAAGCTAC+AGG + chr3_2:57089473-57089492 Msa0412970:CDS 45.0%
CGTGGAGAGAGGTTGTTTGA+GGG - chr3_2:57084043-57084062 None:intergenic 50.0%
GAGAGAGAGTAAGGCGGATA+TGG - chr3_2:57084066-57084085 None:intergenic 50.0%
GACTCCGACAGAGAGTTCTA+GGG - chr3_2:57084168-57084187 None:intergenic 50.0%
AGACTCCGACAGAGAGTTCT+AGG - chr3_2:57084169-57084188 None:intergenic 50.0%
TGAGAGAGTTGGAAACCGGT+GGG - chr3_2:57084253-57084272 None:intergenic 50.0%
ATGAGAGAGTTGGAAACCGG+TGG - chr3_2:57084254-57084273 None:intergenic 50.0%
! ACCGGTTTCCAACTCTCTCA+TGG + chr3_2:57084253-57084272 Msa0412970:CDS 50.0%
GCCATGAGAGAGTTGGAAAC+CGG - chr3_2:57084257-57084276 None:intergenic 50.0%
AATGGCTGCCATGAGAGAGT+TGG - chr3_2:57084264-57084283 None:intergenic 50.0%
AGCTATCTGGATGACGACGT+TGG - chr3_2:57084304-57084323 None:intergenic 50.0%
!! TGAACCGGACCGGTTTGAAA+CGG + chr3_2:57084565-57084584 Msa0412970:CDS 50.0%
CGAACCGAACCGTTTCAAAC+CGG - chr3_2:57084577-57084596 None:intergenic 50.0%
! TGGTGGGAAGATTTGGTTGG+TGG + chr3_2:57084994-57085013 Msa0412970:CDS 50.0%
! GGTGGGAAGATTTGGTTGGT+GGG + chr3_2:57084995-57085014 Msa0412970:CDS 50.0%
!! ATTTGGTTGGTGGGTGTAGC+AGG + chr3_2:57085004-57085023 Msa0412970:CDS 50.0%
GAAGGAGTAGCAGATGTCAC+AGG - chr3_2:57085103-57085122 None:intergenic 50.0%
CTACTGCCTAGAGGTAAACC+TGG - chr3_2:57086966-57086985 None:intergenic 50.0%
!! ATGGAAGTGCTACTGCCTAG+AGG - chr3_2:57086975-57086994 None:intergenic 50.0%
TTCCAAGCTCCATTCCACGA+GGG + chr3_2:57087844-57087863 Msa0412970:CDS 50.0%
AATCGAAACCCCTCGTGGAA+TGG - chr3_2:57087856-57087875 None:intergenic 50.0%
TTCCACGAGGGGTTTCGATT+CGG + chr3_2:57087856-57087875 Msa0412970:CDS 50.0%
GCTAGATCCTCTTCCTACTC+AGG + chr3_2:57088258-57088277 Msa0412970:CDS 50.0%
ATCACTTGGACATGCTTCCG+AGG + chr3_2:57088905-57088924 Msa0412970:CDS 50.0%
TCCTCCACTTCCTCTTCTAG+AGG - chr3_2:57089101-57089120 None:intergenic 50.0%
CTAGAAGAGGAAGTGGAGGA+TGG + chr3_2:57089101-57089120 Msa0412970:CDS 50.0%
CAGAGATACTTGCAGCTGCT+TGG + chr3_2:57089321-57089340 Msa0412970:CDS 50.0%
! TCTCGGAAACAGCTTTGTCG+AGG + chr3_2:57089388-57089407 Msa0412970:CDS 50.0%
CATTGTCGCGCTGTGCTTAC+CGG - chr3_2:57083957-57083976 None:intergenic 55.0%
GTGGCTTCTTCTACGCGCTA+CGG - chr3_2:57084021-57084040 None:intergenic 55.0%
GGAGAGAGGTTGTTTGAGGG+TGG - chr3_2:57084040-57084059 None:intergenic 55.0%
GCGTGGAGAGAGGTTGTTTG+AGG - chr3_2:57084044-57084063 None:intergenic 55.0%
AGAGTAAGGCGGATATGGCG+TGG - chr3_2:57084061-57084080 None:intergenic 55.0%
GTTGGAGGGGAGAGAGAGTA+AGG - chr3_2:57084075-57084094 None:intergenic 55.0%
AGTGGAGACGAGGGGAGTAA+GGG - chr3_2:57084139-57084158 None:intergenic 55.0%
AAGTGGAGACGAGGGGAGTA+AGG - chr3_2:57084140-57084159 None:intergenic 55.0%
!! AGAGTTCTAGGGCACGGAAG+TGG - chr3_2:57084157-57084176 None:intergenic 55.0%
!! CGACAGAGAGTTCTAGGGCA+CGG - chr3_2:57084163-57084182 None:intergenic 55.0%
CGTGCCCTAGAACTCTCTGT+CGG + chr3_2:57084161-57084180 Msa0412970:CDS 55.0%
!!! TGGTTTTGGTGGTGGGGAGA+CGG - chr3_2:57084199-57084218 None:intergenic 55.0%
!! CTAGAAGATGGTGGTGGTGG+TGG - chr3_2:57084503-57084522 None:intergenic 55.0%
CTTTCACCGTTCTCCTCCTC+CGG + chr3_2:57084526-57084545 Msa0412970:CDS 55.0%
CGAACCGTTTCAAACCGGTC+CGG - chr3_2:57084572-57084591 None:intergenic 55.0%
!! CGGACCGGTTTGAAACGGTT+CGG + chr3_2:57084570-57084589 Msa0412970:CDS 55.0%
GTGGACCCAGGTTTACCTCT+AGG + chr3_2:57086957-57086976 Msa0412970:intron 55.0%
CGGACTCTGTGTTCCGACTT+TGG + chr3_2:57087433-57087452 Msa0412970:intron 55.0%
GTTCCAAGCTCCATTCCACG+AGG + chr3_2:57087843-57087862 Msa0412970:CDS 55.0%
TCCAAGCTCCATTCCACGAG+GGG + chr3_2:57087845-57087864 Msa0412970:CDS 55.0%
TACCGAATCGAAACCCCTCG+TGG - chr3_2:57087861-57087880 None:intergenic 55.0%
!! GAGGGGTTTCGATTCGGTAG+AGG + chr3_2:57087862-57087881 Msa0412970:CDS 55.0%
GCTTAGGAGGAAGACAGTCG+TGG + chr3_2:57088608-57088627 Msa0412970:CDS 55.0%
! GCCTCTAGAAGAGGAAGTGG+AGG + chr3_2:57089097-57089116 Msa0412970:CDS 55.0%
GGAGGGGAGAGAGAGTAAGG+CGG - chr3_2:57084072-57084091 None:intergenic 60.0%
AGGGGAGTAAGGGAAGGTGG+TGG - chr3_2:57084129-57084148 None:intergenic 60.0%
ACGAGGGGAGTAAGGGAAGG+TGG - chr3_2:57084132-57084151 None:intergenic 60.0%
GAGACGAGGGGAGTAAGGGA+AGG - chr3_2:57084135-57084154 None:intergenic 60.0%
ACCGTCATCTCCGGAGGAGA+CGG - chr3_2:57084228-57084247 None:intergenic 60.0%
!! GAAGATGGTGGTGGTGGTGG+TGG - chr3_2:57084500-57084519 None:intergenic 60.0%
ACCCCTCGTGGAATGGAGCT+TGG - chr3_2:57087849-57087868 None:intergenic 60.0%
!! AGAGGCGTCACGGTCGTATC+TGG + chr3_2:57089064-57089083 Msa0412970:CDS 60.0%
!! CTTACCGGCGTCGGCATCAC+CGG - chr3_2:57083942-57083961 None:intergenic 65.0%
CAGTGCACGCGCTGCTTCGT+CGG - chr3_2:57083985-57084004 None:intergenic 65.0%
GGCGGATATGGCGTGGAGAG+AGG - chr3_2:57084054-57084073 None:intergenic 65.0%
GGCACGGAAGTGGAGACGAG+GGG - chr3_2:57084147-57084166 None:intergenic 65.0%
GGGCACGGAAGTGGAGACGA+GGG - chr3_2:57084148-57084167 None:intergenic 65.0%
AGGGCACGGAAGTGGAGACG+AGG - chr3_2:57084149-57084168 None:intergenic 65.0%
!!! CGGCGGTGGTTTTGGTGGTG+GGG - chr3_2:57084205-57084224 None:intergenic 65.0%
!!! GCGGCGGTGGTTTTGGTGGT+GGG - chr3_2:57084206-57084225 None:intergenic 65.0%
GTCATCTCCGGAGGAGACGG+CGG - chr3_2:57084225-57084244 None:intergenic 65.0%
GCCGTCTCCTCCGGAGATGA+CGG + chr3_2:57084224-57084243 Msa0412970:CDS 65.0%
! GTCTCCTCCGGAGATGACGG+TGG + chr3_2:57084227-57084246 Msa0412970:CDS 65.0%
! TCAGGCGACGGAAAGCGCAG+TGG + chr3_2:57088405-57088424 Msa0412970:CDS 65.0%
CTTGCCGGTGATGCCGACGC+CGG + chr3_2:57083935-57083954 Msa0412970:exon 70.0%
CGCGCTGTGCTTACCGGCGT+CGG - chr3_2:57083951-57083970 None:intergenic 70.0%
CGACGAAGCAGCGCGTGCAC+TGG + chr3_2:57083983-57084002 Msa0412970:CDS 70.0%
!! CGGCGCGTAGAGCGTTGGAG+GGG - chr3_2:57084088-57084107 None:intergenic 70.0%
!! GCGGCGCGTAGAGCGTTGGA+GGG - chr3_2:57084089-57084108 None:intergenic 70.0%
GGCGCGTGAGCATGAGCAGG+CGG - chr3_2:57084108-57084127 None:intergenic 70.0%
GGTGGCGCGTGAGCATGAGC+AGG - chr3_2:57084111-57084130 None:intergenic 70.0%
!! GGTGGTGGGGAGACGGTCGA+GGG - chr3_2:57084192-57084211 None:intergenic 70.0%
!! TGGTGGTGGGGAGACGGTCG+AGG - chr3_2:57084193-57084212 None:intergenic 70.0%
!!! GGCGGCGGTGGTTTTGGTGG+TGG - chr3_2:57084207-57084226 None:intergenic 70.0%
!!! GACGGCGGCGGTGGTTTTGG+TGG - chr3_2:57084210-57084229 None:intergenic 70.0%
! GGAGACGGCGGCGGTGGTTT+TGG - chr3_2:57084213-57084232 None:intergenic 70.0%
ATCTCCGGAGGAGACGGCGG+CGG - chr3_2:57084222-57084241 None:intergenic 70.0%
TGGGCCACCGTCATCTCCGG+AGG - chr3_2:57084234-57084253 None:intergenic 70.0%
CGGTGGGCCACCGTCATCTC+CGG - chr3_2:57084237-57084256 None:intergenic 70.0%
! CGGAGATGACGGTGGCCCAC+CGG + chr3_2:57084235-57084254 Msa0412970:CDS 70.0%
!! GGCGGCGCGTAGAGCGTTGG+AGG - chr3_2:57084090-57084109 None:intergenic 75.0%
GCAGGCGGCGCGTAGAGCGT+TGG - chr3_2:57084093-57084112 None:intergenic 75.0%
ACCACCGCCGCCGTCTCCTC+CGG + chr3_2:57084215-57084234 Msa0412970:CDS 75.0%
! TCCGGAGGAGACGGCGGCGG+TGG - chr3_2:57084219-57084238 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57083676 57089821 57083676 ID=Msa0412970;Name=Msa0412970
chr3_2 mRNA 57083676 57089821 57083676 ID=Msa0412970-mRNA-1;Parent=Msa0412970;Name=Msa0412970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=269|1|1|1|1|1|3|292|1081
chr3_2 exon 57083676 57085149 57083676 ID=Msa0412970-mRNA-1:exon:11635;Parent=Msa0412970-mRNA-1
chr3_2 exon 57086353 57086578 57086353 ID=Msa0412970-mRNA-1:exon:11636;Parent=Msa0412970-mRNA-1
chr3_2 exon 57087715 57089821 57087715 ID=Msa0412970-mRNA-1:exon:11637;Parent=Msa0412970-mRNA-1
chr3_2 five_prime_UTR 57083676 57083944 57083676 ID=Msa0412970-mRNA-1:five_prime_utr;Parent=Msa0412970-mRNA-1
chr3_2 CDS 57083945 57085149 57083945 ID=Msa0412970-mRNA-1:cds;Parent=Msa0412970-mRNA-1
chr3_2 CDS 57086353 57086578 57086353 ID=Msa0412970-mRNA-1:cds;Parent=Msa0412970-mRNA-1
chr3_2 CDS 57087715 57089529 57087715 ID=Msa0412970-mRNA-1:cds;Parent=Msa0412970-mRNA-1
chr3_2 three_prime_UTR 57089530 57089821 57089530 ID=Msa0412970-mRNA-1:three_prime_utr;Parent=Msa0412970-mRNA-1
Gene Sequence

>Msa0412970

ATGCCGACGCCGGTAAGCACAGCGCGACAATGTTTAACCGACGAAGCAGCGCGTGCACTGGACGAAGCAGTCTCCGTAGCGCGTAGAAGAAGCCACCCTCAAACAACCTCTCTCCACGCCATATCCGCCTTACTCTCTCTCCCCTCCAACGCTCTACGCGCCGCCTGCTCATGCTCACGCGCCACCACCTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTCGACCGTCTCCCCACCACCAAAACCACCGCCGCCGTCTCCTCCGGAGATGACGGTGGCCCACCGGTTTCCAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTTAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCACCACCACCATCTTCTAGATTCTTTCACCGTTCTCCTCCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAAAATTCAAGAAGGGTTGTTGATGTTTTAGCTGGGAAGAGTGGGAGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGCTCAAAGTGGAAAAGTTGGTTTTTTACCTAATGAGCTTGATGGGTTAAAAGTGATTTCTATTGAGAATGAAATTTTTGAGTTTGTTATTGGAAATGGGAGTGAAGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAATTTACATGCTGGTGTTGTTCTATGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTACCTGTGACATCTGCTACTCCTTCTATGGACGGACTATACTCTAAATCCAGCTTAATGGGGTCTTTTGTTCCATTTGGTGGCTTCTTTTCCACACCTTCTGATTTCAGAAATCCAAATCCATCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGTTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGATAGAGGATTAGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAGCATCTTCATCAAAACAAATCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTCCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTCGATGTACAAAATCCTTTCCTTAACCACAAGTCATCTATGTCCCTTAATCCCGTCACCACAGATTTGGTTTTGGGAACGACATATACACCGGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCAGGTCATAATTCCGACGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAGGCGACGGAAAGCGCAGTGGATCAAATGTTAGAGCCGACACATGGTTTTCTTTTCTTGGGCCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCATAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAGACAGTCGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCAATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCTTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAATTATCACTTGGACATGCTTCCGAGGATATCTTTAGAAGCGGTAGCAAAAATGTGAGGGTTTCAAAGAGAAATGGAACATTTCTGAATAAAAGAAAGCTCTGTGAAACTGAAAGCAGTGATTCCAATGAAAAAGTAGCTAGCAAGACAATGAAACATATCAGAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGTGGAGGATGGTGATTGTGAAAATGAATCAGTAGTTCAAAATCATGAAGCATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTTGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCAGCTGCTTGGCTGTCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTCGGAAACAGCTTTGTCGAGGCACAAAAAAAGTATCGCAATGTAGCTGAGTATGTAATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTAA
Protein sequence

>Msa0412970

MPTPVSTARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLSLPSNALRAACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAAVSSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPSSRFFHRSPPPVFLCNIEPDRFETVRFDENSRRVVDVLAGKSGSKRNPLLMGVYAKTALKRFIELAQSGKVGFLPNELDGLKVISIENEIFEFVIGNGSEEKMGLRFDEVGHLVEQNLHAGVVLCFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMDGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSLTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKVNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKSLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQTPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKFDVQNPFLNHKSSMSLNPVTTDLVLGTTYTPVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNSDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCIISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGFFDMEKEPKIFPEERILEAKRCQIELSLGHASEDIFRSGSKNVRVSKRNGTFLNKRKLCETESSDSNEKVASKTMKHIREASRSYLDLNMPLEEEVEDGDCENESVVQNHEAWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATGVCLPARINLN*