Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358960 | XP_003597940.1 | 98.571 | 210 | 2 | 1 | 1 | 210 | 1 | 209 | 1.04e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358960 | G7IIA4 | 98.571 | 210 | 2 | 1 | 1 | 210 | 1 | 209 | 4.99e-152 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa1358960 | -0.814776 | 1.297125e-51 | -8.615850e-47 |
| Msa0072000 | Msa1358960 | 0.825670 | 4.129699e-54 | -8.615850e-47 |
| Msa0094100 | Msa1358960 | 0.802618 | 5.150825e-49 | -8.615850e-47 |
| Msa1351620 | Msa1358960 | 0.819034 | 1.435268e-52 | -8.615850e-47 |
| Msa1358870 | Msa1358960 | -0.814505 | 1.488571e-51 | -8.615850e-47 |
| Msa1358960 | Msa1369530 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
| Msa1358960 | Msa1423990 | 0.807418 | 5.104599e-50 | -8.615850e-47 |
| Msa1358960 | Msa1427830 | 0.811577 | 6.530474e-51 | -8.615850e-47 |
| Msa1358960 | Msa1447440 | 0.806909 | 6.543715e-50 | -8.615850e-47 |
| Msa1358960 | Msa1451620 | -0.807825 | 4.182528e-50 | -8.615850e-47 |
| Msa1358960 | Msa1458550 | 0.805080 | 1.586269e-49 | -8.615850e-47 |
| Msa0626230 | Msa1358960 | 0.805401 | 1.358718e-49 | -8.615850e-47 |
| Msa0638280 | Msa1358960 | 0.828494 | 8.712709e-55 | -8.615850e-47 |
| Msa0638320 | Msa1358960 | 0.814552 | 1.453475e-51 | -8.615850e-47 |
| Msa0647450 | Msa1358960 | -0.815290 | 9.970618e-52 | -8.615850e-47 |
| Msa0657670 | Msa1358960 | 0.804642 | 1.958851e-49 | -8.615850e-47 |
| Msa0658570 | Msa1358960 | 0.803027 | 4.241235e-49 | -8.615850e-47 |
| Msa0663920 | Msa1358960 | 0.802569 | 5.273134e-49 | -8.615850e-47 |
| Msa0722930 | Msa1358960 | 0.821473 | 3.962388e-53 | -8.615850e-47 |
| Msa0723140 | Msa1358960 | 0.809328 | 1.997675e-50 | -8.615850e-47 |
| Msa0725220 | Msa1358960 | 0.805398 | 1.361203e-49 | -8.615850e-47 |
| Msa0743650 | Msa1358960 | 0.800701 | 1.274101e-48 | -8.615850e-47 |
| Msa0743720 | Msa1358960 | 0.820735 | 5.862218e-53 | -8.615850e-47 |
| Msa0769390 | Msa1358960 | 0.808452 | 3.075529e-50 | -8.615850e-47 |
| Msa0789690 | Msa1358960 | 0.805936 | 1.049400e-49 | -8.615850e-47 |
| Msa0810350 | Msa1358960 | -0.801230 | 9.933081e-49 | -8.615850e-47 |
| Msa0828570 | Msa1358960 | 0.803326 | 3.677981e-49 | -8.615850e-47 |
| Msa0832370 | Msa1358960 | 0.807979 | 3.879255e-50 | -8.615850e-47 |
| Msa0158020 | Msa1358960 | 0.817094 | 3.941844e-52 | -8.615850e-47 |
| Msa0179280 | Msa1358960 | 0.817843 | 2.672474e-52 | -8.615850e-47 |
| Msa0185640 | Msa1358960 | -0.846657 | 1.892556e-59 | -8.615850e-47 |
| Msa0190830 | Msa1358960 | 0.813375 | 2.642652e-51 | -8.615850e-47 |
| Msa0208630 | Msa1358960 | 0.800019 | 1.753394e-48 | -8.615850e-47 |
| Msa0215320 | Msa1358960 | -0.813106 | 3.027247e-51 | -8.615850e-47 |
| Msa0226890 | Msa1358960 | 0.837852 | 4.070136e-57 | -8.615850e-47 |
| Msa0234430 | Msa1358960 | 0.808721 | 2.694462e-50 | -8.615850e-47 |
| Msa1228210 | Msa1358960 | 0.809772 | 1.603978e-50 | -8.615850e-47 |
| Msa1233500 | Msa1358960 | 0.805704 | 1.173871e-49 | -8.615850e-47 |
| Msa1237820 | Msa1358960 | 0.806364 | 8.527809e-50 | -8.615850e-47 |
| Msa1238490 | Msa1358960 | 0.810394 | 1.177879e-50 | -8.615850e-47 |
| Msa1249490 | Msa1358960 | 0.804666 | 1.936288e-49 | -8.615850e-47 |
| Msa1256540 | Msa1358960 | -0.839443 | 1.579655e-57 | -8.615850e-47 |
| Msa1261470 | Msa1358960 | 0.842684 | 2.225508e-58 | -8.615850e-47 |
| Msa1271300 | Msa1358960 | 0.804020 | 2.639183e-49 | -8.615850e-47 |
| Msa1296960 | Msa1358960 | -0.847206 | 1.339059e-59 | -8.615850e-47 |
| Msa1304180 | Msa1358960 | 0.841121 | 5.757443e-58 | -8.615850e-47 |
| Msa1308480 | Msa1358960 | 0.831965 | 1.237311e-55 | -8.615850e-47 |
| Msa1308590 | Msa1358960 | 0.834079 | 3.687455e-56 | -8.615850e-47 |
| Msa1308640 | Msa1358960 | 0.843378 | 1.454229e-58 | -8.615850e-47 |
| Msa1335860 | Msa1358960 | 0.813385 | 2.629189e-51 | -8.615850e-47 |
| Msa0369620 | Msa1358960 | 0.820482 | 6.700091e-53 | -8.615850e-47 |
| Msa0371570 | Msa1358960 | 0.815601 | 8.504751e-52 | -8.615850e-47 |
| Msa0399340 | Msa1358960 | 0.803595 | 3.233844e-49 | -8.615850e-47 |
| Msa0412970 | Msa1358960 | 0.841409 | 4.836329e-58 | -8.615850e-47 |
| Msa0417040 | Msa1358960 | 0.838052 | 3.616698e-57 | -8.615850e-47 |
| Msa0466390 | Msa1358960 | 0.800649 | 1.305166e-48 | -8.615850e-47 |
| Msa0467900 | Msa1358960 | -0.817989 | 2.476274e-52 | -8.615850e-47 |
| Msa0469240 | Msa1358960 | 0.809640 | 1.712434e-50 | -8.615850e-47 |
| Msa0469290 | Msa1358960 | 0.826156 | 3.165798e-54 | -8.615850e-47 |
| Msa0980440 | Msa1358960 | 0.802238 | 6.167678e-49 | -8.615850e-47 |
| Msa0991670 | Msa1358960 | 0.815191 | 1.049082e-51 | -8.615850e-47 |
| Msa0992490 | Msa1358960 | -0.822421 | 2.390462e-53 | -8.615850e-47 |
| Msa0996130 | Msa1358960 | 0.815794 | 7.702592e-52 | -8.615850e-47 |
| Msa1023400 | Msa1358960 | 0.803633 | 3.176649e-49 | -8.615850e-47 |
| Msa1026500 | Msa1358960 | 0.805337 | 1.401393e-49 | -8.615850e-47 |
| Msa1036390 | Msa1358960 | 0.817311 | 3.521963e-52 | -8.615850e-47 |
| Msa1043920 | Msa1358960 | 0.808154 | 3.561194e-50 | -8.615850e-47 |
| Msa1075220 | Msa1358960 | -0.806822 | 6.824636e-50 | -8.615850e-47 |
| Msa1076680 | Msa1358960 | 0.800025 | 1.749208e-48 | -8.615850e-47 |
| Msa1087530 | Msa1358960 | 0.809747 | 1.624094e-50 | -8.615850e-47 |
| Msa1104000 | Msa1358960 | 0.800970 | 1.122286e-48 | -8.615850e-47 |
| Msa1105450 | Msa1358960 | 0.801888 | 7.278517e-49 | -8.615850e-47 |
| Msa0296160 | Msa1358960 | 0.835805 | 1.354681e-56 | -8.615850e-47 |
| Msa0311580 | Msa1358960 | 0.814743 | 1.319018e-51 | -8.615850e-47 |
| Msa0334570 | Msa1358960 | 0.832724 | 8.029066e-56 | -8.615850e-47 |
| Msa0340450 | Msa1358960 | 0.812697 | 3.720461e-51 | -8.615850e-47 |
| Msa0342340 | Msa1358960 | -0.841849 | 3.701181e-58 | -8.615850e-47 |
| Msa0344830 | Msa1358960 | 0.812433 | 4.250421e-51 | -8.615850e-47 |
| Msa0350990 | Msa1358960 | 0.801390 | 9.209615e-49 | -8.615850e-47 |
| Msa0358170 | Msa1358960 | 0.819459 | 1.148389e-52 | -8.615850e-47 |
| Msa1111630 | Msa1358960 | 0.803233 | 3.843101e-49 | -8.615850e-47 |
| Msa1116130 | Msa1358960 | -0.808965 | 2.389940e-50 | -8.615850e-47 |
| Msa1139000 | Msa1358960 | -0.809475 | 1.858302e-50 | -8.615850e-47 |
| Msa1154070 | Msa1358960 | 0.802994 | 4.307775e-49 | -8.615850e-47 |
| Msa1162550 | Msa1358960 | -0.824188 | 9.243394e-54 | -8.615850e-47 |
| Msa1186570 | Msa1358960 | 0.808282 | 3.343376e-50 | -8.615850e-47 |
| Msa1204980 | Msa1358960 | -0.828656 | 7.964781e-55 | -8.615850e-47 |
| Msa1205010 | Msa1358960 | -0.831949 | 1.248830e-55 | -8.615850e-47 |
| Msa1221200 | Msa1358960 | -0.805138 | 1.542998e-49 | -8.615850e-47 |
| Msa0504550 | Msa1358960 | 0.814875 | 1.232929e-51 | -8.615850e-47 |
| Msa0515010 | Msa1358960 | 0.831432 | 1.675170e-55 | -8.615850e-47 |
| Msa0524890 | Msa1358960 | -0.805329 | 1.406702e-49 | -8.615850e-47 |
| Msa0526640 | Msa1358960 | -0.806302 | 8.785942e-50 | -8.615850e-47 |
| Msa0540070 | Msa1358960 | 0.833757 | 4.438542e-56 | -8.615850e-47 |
| Msa0553460 | Msa1358960 | 0.801598 | 8.350867e-49 | -8.615850e-47 |
| Msa0590840 | Msa1358960 | 0.800866 | 1.179052e-48 | -8.615850e-47 |
| Msa0843280 | Msa1358960 | 0.803626 | 3.187206e-49 | -8.615850e-47 |
| Msa0863770 | Msa1358960 | 0.803169 | 3.963210e-49 | -8.615850e-47 |
| Msa0930390 | Msa1358960 | 0.814080 | 1.848092e-51 | -8.615850e-47 |
| Msa0956390 | Msa1358960 | 0.815756 | 7.852804e-52 | -8.615850e-47 |
| Msa0961420 | Msa1358960 | -0.814535 | 1.466724e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358960 | MtrunA17_Chr2g0333351 | 98.571 | 210 | 2 | 1 | 1 | 210 | 1 | 209 | 9.61e-156 | 429 |
| Msa1358960 | MtrunA17_Chr4g0003001 | 60.181 | 221 | 64 | 10 | 1 | 210 | 58 | 265 | 1.02e-80 | 241 |
| Msa1358960 | MtrunA17_Chr4g0064971 | 45.912 | 159 | 70 | 3 | 1 | 158 | 1 | 144 | 2.10e-34 | 122 |
| Msa1358960 | MtrunA17_Chr2g0304551 | 38.378 | 185 | 86 | 6 | 1 | 165 | 1 | 177 | 1.63e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358960 | AT1G15760.1 | 44.444 | 225 | 79 | 8 | 3 | 209 | 5 | 201 | 1.03e-57 | 181 |
| Msa1358960 | AT1G80520.1 | 47.489 | 219 | 77 | 8 | 1 | 209 | 1 | 191 | 9.86e-51 | 163 |
| Msa1358960 | AT2G12462.1 | 29.231 | 260 | 121 | 7 | 1 | 209 | 1 | 248 | 4.88e-26 | 101 |
Find 42 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAGGCCTAATGGTGGATT+TGG | 0.285518 | tig0016604:-15933 | Msa1358960:CDS |
| GCTTTGTCTGGTGATCTTGA+TGG | 0.316091 | tig0016604:-15795 | Msa1358960:CDS |
| GAGAATTTCTAATCTGTGTT+TGG | 0.325351 | tig0016604:+16097 | None:intergenic |
| TAAGTGGGATACCATGTTTA+AGG | 0.337355 | tig0016604:-15652 | Msa1358960:CDS |
| GAGAAAATGTTTCTCACAAA+TGG | 0.339341 | tig0016604:-15852 | Msa1358960:CDS |
| CCATCTCTTGTATATGAGTA+TGG | 0.354378 | tig0016604:-16206 | Msa1358960:CDS |
| TACTGAAGAATCAGCACTTA+TGG | 0.357191 | tig0016604:-15964 | Msa1358960:CDS |
| AGTACTTAGCTAACTATGTT+AGG | 0.383843 | tig0016604:-15998 | Msa1358960:CDS |
| TTCTAATCTGTGTTTGGCTA+TGG | 0.404684 | tig0016604:+16103 | None:intergenic |
| ATAATCATGATGATGGTTAT+TGG | 0.406535 | tig0016604:-15695 | Msa1358960:CDS |
| CTAGGCCTAATGGTGGATTT+GGG | 0.437057 | tig0016604:-15932 | Msa1358960:CDS |
| ACAGTAGCTCCTGCTTTGTC+TGG | 0.454059 | tig0016604:-15807 | Msa1358960:CDS |
| CACTTATGGTGATGCCAACT+AGG | 0.468970 | tig0016604:-15950 | Msa1358960:CDS |
| GAAGAGGAACACACAATTTG+TGG | 0.477404 | tig0016604:-15886 | Msa1358960:CDS |
| CCATGCTTTGTAGAAACTCA+TGG | 0.497469 | tig0016604:+16132 | None:intergenic |
| TTAACTCAACAGCCATGGAT+TGG | 0.500177 | tig0016604:-16259 | None:intergenic |
| TTTCCAAAAGGAGCAAAAGA+TGG | 0.506781 | tig0016604:-15748 | Msa1358960:CDS |
| AATCCACCATTAGGCCTAGT+TGG | 0.510240 | tig0016604:+15936 | None:intergenic |
| ATGGTGGATTTGGGAGAAGA+TGG | 0.518326 | tig0016604:-15923 | Msa1358960:CDS |
| CCATGAGTTTCTACAAAGCA+TGG | 0.527981 | tig0016604:-16132 | Msa1358960:CDS |
| CAAAAGATGGATGGAGATGA+TGG | 0.529408 | tig0016604:-15735 | Msa1358960:CDS |
| TACAAGAGATGGCTCAAGGT+TGG | 0.536104 | tig0016604:+16217 | None:intergenic |
| CTGCTGTTGAAGAGATTAAG+TGG | 0.538740 | tig0016604:-15668 | Msa1358960:CDS |
| CTTCTCCCAAATCCACCATT+AGG | 0.539738 | tig0016604:+15927 | None:intergenic |
| GTGATGCCAACTAGGCCTAA+TGG | 0.547391 | tig0016604:-15942 | Msa1358960:CDS |
| GATGGAGATGATGGTGGTGA+TGG | 0.550508 | tig0016604:-15726 | Msa1358960:CDS |
| TGTTGTGTATCATTTCCAAA+AGG | 0.557274 | tig0016604:-15760 | Msa1358960:CDS |
| CAAAAGGAGCAAAAGATGGA+TGG | 0.561894 | tig0016604:-15744 | Msa1358960:CDS |
| AATAATGATAATCATGATGA+TGG | 0.562055 | tig0016604:-15702 | Msa1358960:CDS |
| CCATACTCATATACAAGAGA+TGG | 0.573633 | tig0016604:+16206 | None:intergenic |
| TCAAGATCACCAGACAAAGC+AGG | 0.592387 | tig0016604:+15798 | None:intergenic |
| CATGAGTTTCTACAAAGCAT+GGG | 0.601787 | tig0016604:-16131 | Msa1358960:CDS |
| GGAAGAGTGCTATAATGAAG+AGG | 0.605141 | tig0016604:-15902 | Msa1358960:CDS |
| AAATGTTTCTCACAAATGGA+AGG | 0.609404 | tig0016604:-15848 | Msa1358960:CDS |
| CATATACAAGAGATGGCTCA+AGG | 0.614307 | tig0016604:+16213 | None:intergenic |
| AATTTGTAGCTGCAATCAAG+AGG | 0.614506 | tig0016604:-16028 | Msa1358960:CDS |
| TAGCCATGAAAACCAATCCA+TGG | 0.623251 | tig0016604:+16247 | None:intergenic |
| TGCTGTTGAAGAGATTAAGT+GGG | 0.633418 | tig0016604:-15667 | Msa1358960:CDS |
| TGGCTTTAGATCCTTAAACA+TGG | 0.634954 | tig0016604:+15641 | None:intergenic |
| ATGCCAACTAGGCCTAATGG+TGG | 0.656564 | tig0016604:-15939 | Msa1358960:CDS |
| GAGGAACACACAATTTGTGG+TGG | 0.682058 | tig0016604:-15883 | Msa1358960:CDS |
| AAGATGGATGGAGATGATGG+TGG | 0.707845 | tig0016604:-15732 | Msa1358960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATGATAATCATGATGA+TGG | - | tig0016604:16178-16197 | Msa1358960:CDS | 20.0% |
| !!! | ATAATCATGATGATGGTTAT+TGG | - | tig0016604:16185-16204 | Msa1358960:CDS | 25.0% |
| GAGAATTTCTAATCTGTGTT+TGG | + | tig0016604:15786-15805 | None:intergenic | 30.0% | |
| AGTACTTAGCTAACTATGTT+AGG | - | tig0016604:15882-15901 | Msa1358960:CDS | 30.0% | |
| GAGAAAATGTTTCTCACAAA+TGG | - | tig0016604:16028-16047 | Msa1358960:CDS | 30.0% | |
| AAATGTTTCTCACAAATGGA+AGG | - | tig0016604:16032-16051 | Msa1358960:CDS | 30.0% | |
| !! | TTTTGGAAATGATACACAAC+AGG | + | tig0016604:16121-16140 | None:intergenic | 30.0% |
| TGTTGTGTATCATTTCCAAA+AGG | - | tig0016604:16120-16139 | Msa1358960:CDS | 30.0% | |
| CCATACTCATATACAAGAGA+TGG | + | tig0016604:15677-15696 | None:intergenic | 35.0% | |
| CCATCTCTTGTATATGAGTA+TGG | - | tig0016604:15674-15693 | Msa1358960:CDS | 35.0% | |
| CATGAGTTTCTACAAAGCAT+GGG | - | tig0016604:15749-15768 | Msa1358960:CDS | 35.0% | |
| TTCTAATCTGTGTTTGGCTA+TGG | + | tig0016604:15780-15799 | None:intergenic | 35.0% | |
| ! | ACAAATTTTGCAACTGTGTG+TGG | + | tig0016604:15839-15858 | None:intergenic | 35.0% |
| AATTTGTAGCTGCAATCAAG+AGG | - | tig0016604:15852-15871 | Msa1358960:CDS | 35.0% | |
| TACTGAAGAATCAGCACTTA+TGG | - | tig0016604:15916-15935 | Msa1358960:CDS | 35.0% | |
| TTTCCAAAAGGAGCAAAAGA+TGG | - | tig0016604:16132-16151 | Msa1358960:CDS | 35.0% | |
| TGCTGTTGAAGAGATTAAGT+GGG | - | tig0016604:16213-16232 | Msa1358960:CDS | 35.0% | |
| TAAGTGGGATACCATGTTTA+AGG | - | tig0016604:16228-16247 | Msa1358960:CDS | 35.0% | |
| !! | TGGCTTTAGATCCTTAAACA+TGG | + | tig0016604:16242-16261 | None:intergenic | 35.0% |
| CATATACAAGAGATGGCTCA+AGG | + | tig0016604:15670-15689 | None:intergenic | 40.0% | |
| ! | GCTCATTTTGTGCAAAGACA+AGG | + | tig0016604:15700-15719 | None:intergenic | 40.0% |
| CCATGCTTTGTAGAAACTCA+TGG | + | tig0016604:15751-15770 | None:intergenic | 40.0% | |
| CCATGAGTTTCTACAAAGCA+TGG | - | tig0016604:15748-15767 | Msa1358960:CDS | 40.0% | |
| !! | GGAAGAGTGCTATAATGAAG+AGG | - | tig0016604:15978-15997 | Msa1358960:CDS | 40.0% |
| GAAGAGGAACACACAATTTG+TGG | - | tig0016604:15994-16013 | Msa1358960:CDS | 40.0% | |
| ! | AAAGCAGGAGCTACTGTTTT+TGG | + | tig0016604:16070-16089 | None:intergenic | 40.0% |
| ! | CATCCATCTTTTGCTCCTTT+TGG | + | tig0016604:16138-16157 | None:intergenic | 40.0% |
| CAAAAGGAGCAAAAGATGGA+TGG | - | tig0016604:16136-16155 | Msa1358960:CDS | 40.0% | |
| CAAAAGATGGATGGAGATGA+TGG | - | tig0016604:16145-16164 | Msa1358960:CDS | 40.0% | |
| CTGCTGTTGAAGAGATTAAG+TGG | - | tig0016604:16212-16231 | Msa1358960:CDS | 40.0% | |
| TACAAGAGATGGCTCAAGGT+TGG | + | tig0016604:15666-15685 | None:intergenic | 45.0% | |
| ! | CACTTATGGTGATGCCAACT+AGG | - | tig0016604:15930-15949 | Msa1358960:CDS | 45.0% |
| AATCCACCATTAGGCCTAGT+TGG | + | tig0016604:15947-15966 | None:intergenic | 45.0% | |
| !! | ACTAGGCCTAATGGTGGATT+TGG | - | tig0016604:15947-15966 | Msa1358960:CDS | 45.0% |
| !! | CTAGGCCTAATGGTGGATTT+GGG | - | tig0016604:15948-15967 | Msa1358960:CDS | 45.0% |
| CTTCTCCCAAATCCACCATT+AGG | + | tig0016604:15956-15975 | None:intergenic | 45.0% | |
| !! | ATGGTGGATTTGGGAGAAGA+TGG | - | tig0016604:15957-15976 | Msa1358960:CDS | 45.0% |
| GAGGAACACACAATTTGTGG+TGG | - | tig0016604:15997-16016 | Msa1358960:CDS | 45.0% | |
| !!! | AGGAGCTACTGTTTTTGGCA+TGG | + | tig0016604:16065-16084 | None:intergenic | 45.0% |
| TCAAGATCACCAGACAAAGC+AGG | + | tig0016604:16085-16104 | None:intergenic | 45.0% | |
| GCTTTGTCTGGTGATCTTGA+TGG | - | tig0016604:16085-16104 | Msa1358960:CDS | 45.0% | |
| ! | AAGATGGATGGAGATGATGG+TGG | - | tig0016604:16148-16167 | Msa1358960:CDS | 45.0% |
| GTGATGCCAACTAGGCCTAA+TGG | - | tig0016604:15938-15957 | Msa1358960:CDS | 50.0% | |
| ATGCCAACTAGGCCTAATGG+TGG | - | tig0016604:15941-15960 | Msa1358960:CDS | 50.0% | |
| ACAGTAGCTCCTGCTTTGTC+TGG | - | tig0016604:16073-16092 | Msa1358960:CDS | 50.0% | |
| !! | GATGGAGATGATGGTGGTGA+TGG | - | tig0016604:16154-16173 | Msa1358960:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016604 | gene | 15635 | 16267 | 15635 | ID=Msa1358960;Name=Msa1358960 |
| tig0016604 | mRNA | 15635 | 16267 | 15635 | ID=Msa1358960-mRNA-1;Parent=Msa1358960;Name=Msa1358960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|210 |
| tig0016604 | exon | 15635 | 16267 | 15635 | ID=Msa1358960-mRNA-1:exon:11154;Parent=Msa1358960-mRNA-1 |
| tig0016604 | CDS | 15635 | 16267 | 15635 | ID=Msa1358960-mRNA-1:cds;Parent=Msa1358960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
