AlfalfaGEDB | Msa1336470

M. sativa cultivar zhongmu-4 / Msa1336470

KEGG: K20562
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336470	XP_003615666.1	91.572	439	37	0	3	441	2	440	0.0	804

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336470	sp\|H2DH18\|C7A12_PANGI	52.083	432	203	2	10	441	8	435	1.59e-160	465

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336470	G7KE80	91.572	439	37	0	3	441	2	440	0.0	804

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038350	Msa1336470	-0.814345	1.615253e-51	-8.615850e-47
Msa0106370	Msa1336470	-0.820367	7.119429e-53	-8.615850e-47
Msa0153440	Msa1336470	0.803905	2.788881e-49	-8.615850e-47
Msa0185640	Msa1336470	-0.842685	2.223319e-58	-8.615850e-47
Msa0201330	Msa1336470	0.807939	3.956683e-50	-8.615850e-47
Msa0208390	Msa1336470	0.807069	6.052849e-50	-8.615850e-47
Msa0226250	Msa1336470	0.801073	1.069425e-48	-8.615850e-47
Msa0243910	Msa1336470	0.800814	1.208068e-48	-8.615850e-47
Msa0243930	Msa1336470	0.808650	2.790754e-50	-8.615850e-47
Msa0245880	Msa1336470	0.804720	1.886095e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336470	MtrunA17_Chr5g0430091	91.572	439	37	0	3	441	2	440	0.0	804
Msa1336470	MtrunA17_Chr5g0430101	84.332	434	66	1	8	441	6	437	0.0	758
Msa1336470	MtrunA17_Chr5g0430131	83.144	439	73	1	3	441	2	439	0.0	733
Msa1336470	MtrunA17_Chr5g0430031	79.592	441	89	1	1	441	1	440	0.0	733
Msa1336470	MtrunA17_Chr5g0430081	82.719	434	75	0	8	441	5	438	0.0	731
Msa1336470	MtrunA17_Chr5g0430111	80.941	425	81	0	3	427	2	426	0.0	720
Msa1336470	MtrunA17_Chr8g0390881	60.137	439	170	3	7	441	3	440	0.0	544
Msa1336470	MtrunA17_Chr6g0484841	57.656	418	175	2	25	441	24	440	1.93e-180	513
Msa1336470	MtrunA17_Chr6g0484811	56.064	437	180	3	16	441	6	441	1.62e-173	496
Msa1336470	MtrunA17_Chr5g0430071	81.229	293	55	0	149	441	1	293	7.74e-168	476

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336470	AT3G48270.1	38.391	435	252	7	10	441	3	424	9.65e-107	325
Msa1336470	AT3G26310.1	40.952	420	230	8	28	441	25	432	2.69e-106	324
Msa1336470	AT3G26330.1	40.436	413	231	8	36	441	29	433	1.38e-104	320
Msa1336470	AT3G48280.1	37.644	433	259	4	10	441	2	424	5.53e-102	313
Msa1336470	AT3G26320.1	39.302	430	239	9	22	441	16	433	1.44e-101	312
Msa1336470	AT3G48300.1	39.518	415	237	6	28	441	21	422	1.75e-101	311
Msa1336470	AT3G48300.2	39.518	415	237	6	28	441	23	424	1.86e-101	311
Msa1336470	AT3G48310.1	39.401	401	231	5	42	441	36	425	2.15e-101	311
Msa1336470	AT3G26300.1	38.549	441	254	7	9	441	2	433	1.51e-100	309
Msa1336470	AT3G48290.1	39.604	404	230	6	40	441	35	426	1.40e-99	306

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Find 72 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAGTAAAGCCCTCGATG+AGG	0.695366	tig0001216:-589	Msa1336470:CDS
ACCTTAAGACTTTATCCTGT+TGG	0.410543	tig0001216:-216	Msa1336470:CDS
ACTAGTAGTGTGTTTGTTTG+TGG	0.400070	tig0001216:+2350	Msa1336470:intergenic
AGAGAGAGCATAACAATTGA+TGG	0.397506	tig0001216:-168	Msa1336470:CDS
AGCACCAAGACTGAGGAGTG+AGG	0.670511	tig0001216:+2301	Msa1336470:intergenic
AGTATGTGAAAGTGAAGAGA+AGG	0.531627	tig0001216:+2211	Msa1336470:intergenic
AGTGATTGAAGTGTTCTATG+TGG	0.604927	tig0001216:+2078	Msa1336470:intergenic
ATAGTAAATGCATGGGCTAT+AGG	0.377235	tig0001216:-117	Msa1336470:CDS
ATCGGAAATCTTCACATGTT+AGG	0.421074	tig0001216:-2108	Msa1336470:CDS
ATCTGCTACCACGATTGAGT+GGG	0.629522	tig0001216:-376	Msa1336470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATCCATAAAAAGCTACC+AGG	-	tig0001216:271-290	Msa1336470:CDS	30.0%
ATGTGAAGATTTCCGATTAT+TGG	+	tig0001216:310-329	Msa1336470:intergenic	30.0%
CAATCACTCTCCAAAAAATA+TGG	-	tig0001216:358-377	Msa1336470:CDS	30.0%
TAGTTATGAAATTGGAAAGG+TGG	-	tig0001216:1344-1363	Msa1336470:intron	30.0%
ACAAAAACAGAAGAAGCTAT+TGG	+	tig0001216:1642-1661	Msa1336470:intergenic	30.0%
GAAAATATTCATGTAGTAGC+TGG	-	tig0001216:1758-1777	Msa1336470:CDS	30.0%
GATGAGATACAAAATGAAGT+AGG	-	tig0001216:2115-2134	Msa1336470:CDS	30.0%
TGAAGTAGGAAATAAGAGAA+TGG	-	tig0001216:2129-2148	Msa1336470:CDS	30.0%
TAAGAGAATGGTTAAAGAGA+AGG	-	tig0001216:2141-2160	Msa1336470:CDS	30.0%
TAATTACTTAGATATGGTGG+TGG	-	tig0001216:2177-2196	Msa1336470:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001216	gene	11	2432	11	ID=Msa1336470;Name=Msa1336470
tig0001216	mRNA	11	2432	11	ID=Msa1336470-mRNA-1;Parent=Msa1336470;Name=Msa1336470-mRNA-1;_AED=0.36;_eAED=0.36;_QI=161\|1\|0.5\|1\|1\|1\|2\|0\|441
tig0001216	exon	11	634	11	ID=Msa1336470-mRNA-1:exon:747;Parent=Msa1336470-mRNA-1
tig0001216	exon	1573	2432	1573	ID=Msa1336470-mRNA-1:exon:746;Parent=Msa1336470-mRNA-1
tig0001216	five_prime_UTR	2272	2432	2272	ID=Msa1336470-mRNA-1:five_prime_utr;Parent=Msa1336470-mRNA-1
tig0001216	CDS	1573	2271	1573	ID=Msa1336470-mRNA-1:cds;Parent=Msa1336470-mRNA-1
tig0001216	CDS	11	634	11	ID=Msa1336470-mRNA-1:cds;Parent=Msa1336470-mRNA-1

Gene Sequence

>Msa1336470

ATGTCTTCTGCAGAAATAATAACTACATTACTTTATTTCCTTCTCTTCACTTTCACATACTTTTTATTCAAACTCTTCTTACATCCAAAACAAAATACCATTATCCATAAAAAGCTACCAGGTCCATCAACACTACCAATAATCGGAAATCTTCACATGTTAGGTAAACTTCCACATAGAACACTTCAATCACTCTCCAAAAAATATGGTCCAATCATGTCATTACAACTTGGTCAAGTTCCAACTATTATCATTTCATCTTCAAAAGCTGCAGAATCATTCCTCAAAACTCATGACATCGTTTTTGCAAGTCGAGCAAAGAGTCAAGGATCAGAGATCTTGTCATATGGTTCCAAAGGGATGGCTTTTTCTGAGTATGGTCCTTATTGGCGTAATGTGAGGAAATTTTGCACTTTGAAACTTTTTAGTGCTTCAAAAGTTGAGATGTTTGGTCCTATTAGGAAGGAGAAGTTGGATGTTTTGGTTAAATCTTTGAAGAAAGTTGCTTTGGAAGGTGAGGTTGTGAATGTGAGTGAGGTTGTAGAGAATCTTATTGAGGATATTGTGTATAAGATGATACTGGGTAGAGGTAAGTATGAGCAATTTGACATGAATAAGTTAGTTCTAGAAGCATTGGCTTTGATGGGAGCTTTTAATCTGGCTGATTATGTACCTTGGCTAGGCGTTTTTGACCTTCAGGGATTAACACGAGCTTGCAAAAAAACCAGTAAAGCCCTCGATGAGGTTTTGGAGATGATAATAACAGAGCACGAACAGACTGCTAATAGAGACAAAACTCGTAATGAAGACTTTGTAGACATACTTCTTTCAATTATGCACCAAACCATTGATGTCGAGGGTGAACAAAATATGGTCATTGATCGAACTAACATCAAGGCTATTTTGCTCGACATGATAGTGGCATCAATTCATACATCTGCTACCACGATTGAGTGGGCTTTATCTGAACTTCTAAGGCATCCAAGAGTGATGAAAATTCTTCAAGATGAGATACAAAATGAAGTAGGAAATAAGAGAATGGTTAAAGAGAAGGATCTGAAGAAGTTTAATTACTTAGATATGGTGGTGGATGAAACCTTAAGACTTTATCCTGTTGGACCCTTATTAATCCCTCGTGAATGTAGAGAGAGCATAACAATTGATGGATATTTTATAACGAAAAAGACTCGAGTTATAGTAAATGCATGGGCTATAGGGAGAGATTCTAATGTTTGGTCAGAAAATGCTGATGAATTTTACCCAGAGAGATTTATTGACAAGAAAATGAATTATCTCGGTCAAGAGTTTGAATCTATACCATTT

Protein sequence

>Msa1336470

MSSAEIITTLLYFLLFTFTYFLFKLFLHPKQNTIIHKKLPGPSTLPIIGNLHMLGKLPHRTLQSLSKKYGPIMSLQLGQVPTIIISSSKAAESFLKTHDIVFASRAKSQGSEILSYGSKGMAFSEYGPYWRNVRKFCTLKLFSASKVEMFGPIRKEKLDVLVKSLKKVALEGEVVNVSEVVENLIEDIVYKMILGRGKYEQFDMNKLVLEALALMGAFNLADYVPWLGVFDLQGLTRACKKTSKALDEVLEMIITEHEQTANRDKTRNEDFVDILLSIMHQTIDVEGEQNMVIDRTNIKAILLDMIVASIHTSATTIEWALSELLRHPRVMKILQDEIQNEVGNKRMVKEKDLKKFNYLDMVVDETLRLYPVGPLLIPRECRESITIDGYFITKKTRVIVNAWAIGRDSNVWSENADEFYPERFIDKKMNYLGQEFESIPF