Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0506220 | XP_013460445.1 | 90.276 | 617 | 51 | 5 | 1 | 614 | 1 | 611 | 0.0 | 1065 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0506220 | A0A072UZD4 | 90.276 | 617 | 51 | 5 | 1 | 614 | 1 | 611 | 0.0 | 1065 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007440 | Msa0506220 | 0.824238 | 8.994539e-54 | -8.615850e-47 |
Msa0084080 | Msa0506220 | 0.804191 | 2.431576e-49 | -8.615850e-47 |
Msa0422010 | Msa0506220 | 0.813609 | 2.347478e-51 | -8.615850e-47 |
Msa0442610 | Msa0506220 | 0.803790 | 2.946354e-49 | -8.615850e-47 |
Msa0299730 | Msa0506220 | 0.812740 | 3.640659e-51 | -8.615850e-47 |
Msa0506220 | Msa0577500 | 0.820633 | 6.186753e-53 | -8.615850e-47 |
Msa0506220 | Msa0700230 | 0.813508 | 2.470386e-51 | -8.615850e-47 |
Msa0506220 | Msa0711100 | 0.808210 | 3.464667e-50 | -8.615850e-47 |
Msa0506220 | Msa0832150 | 0.819739 | 9.915826e-53 | -8.615850e-47 |
Msa0506220 | Msa1306840 | 0.822703 | 2.055950e-53 | -8.615850e-47 |
Msa0506220 | Msa1376130 | 0.806218 | 9.151146e-50 | -8.615850e-47 |
Msa0506220 | Msa1392700 | 0.801872 | 7.336059e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0506220 | MtrunA17_Chr3g0107471 | 90.276 | 617 | 51 | 5 | 1 | 614 | 1 | 611 | 0.0 | 1065 |
Msa0506220 | MtrunA17_Chr3g0145531 | 30.268 | 261 | 116 | 7 | 390 | 622 | 210 | 432 | 7.27e-17 | 83.6 |
Msa0506220 | MtrunA17_Chr3g0145531 | 33.679 | 193 | 113 | 7 | 8 | 187 | 6 | 196 | 1.18e-12 | 70.5 |
Msa0506220 | MtrunA17_Chr3g0144601 | 28.352 | 261 | 121 | 6 | 390 | 622 | 210 | 432 | 2.12e-14 | 75.9 |
Msa0506220 | MtrunA17_Chr3g0144601 | 33.679 | 193 | 113 | 7 | 8 | 187 | 6 | 196 | 1.06e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0506220 | AT1G15720.1 | 30.688 | 189 | 122 | 5 | 3 | 184 | 2 | 188 | 5.40e-15 | 77.8 |
Msa0506220 | AT5G58340.2 | 27.972 | 286 | 171 | 11 | 3 | 272 | 2 | 268 | 6.45e-13 | 72.0 |
Msa0506220 | AT5G58340.1 | 27.972 | 286 | 171 | 11 | 3 | 272 | 2 | 268 | 6.45e-13 | 72.0 |
Find 195 sgRNAs with CRISPR-Local
Find 467 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCCATAGAACTTGATTTA+AGG | 0.141175 | 3_4:-52422411 | None:intergenic |
AGAAGGCTCCTTGGCAAAAT+TGG | 0.219221 | 3_4:-52422611 | None:intergenic |
TGTTTCATGATGGAAGATTT+TGG | 0.227045 | 3_4:-52419358 | None:intergenic |
TATTTGAACCGTTCTTGTTT+TGG | 0.254273 | 3_4:+52425848 | Msa0506220:CDS |
AGAAGGTTGTTAGAAGGTTT+GGG | 0.274634 | 3_4:+52420011 | Msa0506220:CDS |
GAAGTGAGAGTTCGCACTTC+TGG | 0.278590 | 3_4:+52420898 | Msa0506220:CDS |
GCGAGCTGGTACTTCTAGTA+TGG | 0.291370 | 3_4:+52420319 | Msa0506220:CDS |
AAGGTGCGCTTTGGGATGTT+AGG | 0.293183 | 3_4:+52419811 | Msa0506220:CDS |
TGATGGGAGGTTAGAAGGTT+TGG | 0.294386 | 3_4:+52420768 | Msa0506220:CDS |
CTCCATAGAACTTGATTTAA+GGG | 0.304778 | 3_4:-52422410 | None:intergenic |
AAGCGTGATGGGAGGTTAGA+AGG | 0.309015 | 3_4:+52420763 | Msa0506220:CDS |
TTGGAGGGGAAGGGAGAGGC+GGG | 0.313647 | 3_4:+52419740 | Msa0506220:CDS |
TAGAAGGTTGTTAGAAGGTT+TGG | 0.315126 | 3_4:+52420010 | Msa0506220:CDS |
AATGGGAGAGTAGAAGGTTT+AGG | 0.318960 | 3_4:+52420131 | Msa0506220:CDS |
GGAGGGGAAGGGAGAGGCGG+GGG | 0.324847 | 3_4:+52419742 | Msa0506220:CDS |
AAACATTACAAACTGGATAA+TGG | 0.328442 | 3_4:+52419395 | Msa0506220:CDS |
TTGGCATCATTAGGCTGATA+TGG | 0.344084 | 3_4:-52422592 | None:intergenic |
TTTCGGCGGTGAAGAGGATT+TGG | 0.346079 | 3_4:+52419721 | Msa0506220:CDS |
GTCCCTTAAATCAAGTTCTA+TGG | 0.346935 | 3_4:+52422408 | Msa0506220:CDS |
GGGCGTAATGGGAGAGTAGA+AGG | 0.350234 | 3_4:+52420125 | Msa0506220:CDS |
TACTTCTGTTGATGCGAATC+AGG | 0.354114 | 3_4:+52420286 | Msa0506220:CDS |
ATGGGAGAGTAGAAGGTTTA+GGG | 0.354705 | 3_4:+52420132 | Msa0506220:CDS |
TTTGGAGGGGAAGGGAGAGG+CGG | 0.360995 | 3_4:+52419739 | Msa0506220:CDS |
GGGAGTAGAAGGTTGTTAGA+AGG | 0.363398 | 3_4:+52420005 | Msa0506220:CDS |
GTGTTGGGCGATTGGAACTT+AGG | 0.364577 | 3_4:+52425904 | Msa0506220:CDS |
GATGGGAGGTTAGAAGGTTT+GGG | 0.367747 | 3_4:+52420769 | Msa0506220:CDS |
GGATTTGGAGGGGAAGGGAG+AGG | 0.371997 | 3_4:+52419736 | Msa0506220:CDS |
TGGAGGGGAAGGGAGAGGCG+GGG | 0.374471 | 3_4:+52419741 | Msa0506220:CDS |
TGTAGCCAATTTGGATCTTA+CGG | 0.379477 | 3_4:-52422485 | None:intergenic |
ACAGGTTTGGAGAAGGAAAC+TGG | 0.380097 | 3_4:+52423501 | Msa0506220:intron |
TGAAGCCGTAAGATCCAAAT+TGG | 0.381380 | 3_4:+52422480 | Msa0506220:CDS |
AGAGATTGAAGGTGCGCTTT+GGG | 0.383115 | 3_4:+52419803 | Msa0506220:CDS |
GCGACGATCATTACTGTAGT+TGG | 0.383914 | 3_4:-52422680 | None:intergenic |
CTGTTTCTCCAATAGAAATT+CGG | 0.385343 | 3_4:+52422236 | Msa0506220:intron |
CGGAGAGTGGAAGTAGGGTT+AGG | 0.385447 | 3_4:-52419467 | None:intergenic |
GCTCGGGTGGTGGAATGTCG+AGG | 0.390367 | 3_4:+52420102 | Msa0506220:CDS |
GTCAGCCAAGAAGGAAGAAA+AGG | 0.392804 | 3_4:+52423279 | Msa0506220:CDS |
CGACGATCATTACTGTAGTT+GGG | 0.393470 | 3_4:-52422679 | None:intergenic |
GGGGAGTGGGCTGGTGTCGG+AGG | 0.394745 | 3_4:+52419761 | Msa0506220:CDS |
AAGAGATTGAAGGTGCGCTT+TGG | 0.396331 | 3_4:+52419802 | Msa0506220:CDS |
CTTGCCCGTCGCATTAAGTT+GGG | 0.404558 | 3_4:-52422703 | None:intergenic |
GAAGGGGAATGGTTTGTGTC+CGG | 0.405618 | 3_4:+52419956 | Msa0506220:CDS |
AAATCATGGCAATGAAGAAT+TGG | 0.405691 | 3_4:+52420250 | Msa0506220:CDS |
CAAGATGTTCGAGGATTTGA+AGG | 0.416839 | 3_4:-52419572 | None:intergenic |
TTGGCAAAATTGGCATCATT+AGG | 0.418185 | 3_4:-52422601 | None:intergenic |
CGACTACCATTACTACAGTT+AGG | 0.429040 | 3_4:-52422655 | None:intergenic |
TGAACGAAAACATTACAAAC+TGG | 0.429144 | 3_4:+52419388 | Msa0506220:CDS |
TGTTAGGGTTGCGGAGAGGT+TGG | 0.429379 | 3_4:+52419827 | Msa0506220:CDS |
GATCGGGAACGGTGGTGTTA+CGG | 0.434808 | 3_4:-52419428 | None:intergenic |
ATGCTGCTGAGGGGAGTAGA+AGG | 0.436345 | 3_4:+52419994 | Msa0506220:CDS |
GCGAATATGGGCAACTTGAA+AGG | 0.437533 | 3_4:+52425635 | Msa0506220:CDS |
GGTTGGTGGGGTTGAATACA+AGG | 0.441539 | 3_4:+52419844 | Msa0506220:CDS |
TTTCTATCTCGAATGCGATT+CGG | 0.443276 | 3_4:+52419619 | Msa0506220:CDS |
AAGGGGAATGGTTTGTGTCC+GGG | 0.445060 | 3_4:+52419957 | Msa0506220:CDS |
AGAAGGTTTGGGGAAAGAGC+AGG | 0.446728 | 3_4:+52420022 | Msa0506220:CDS |
TCTAACATGTGTTGGGCGAT+TGG | 0.449830 | 3_4:+52425896 | Msa0506220:CDS |
TCAGATGTGTGCAATGCATC+AGG | 0.450692 | 3_4:-52422460 | None:intergenic |
GAAGAGAATGGCTCGGGTGG+TGG | 0.450981 | 3_4:+52420092 | Msa0506220:CDS |
TAGGGTTGCGGAGAGGTTGG+TGG | 0.451418 | 3_4:+52419830 | Msa0506220:CDS |
CGAATATGGGCAACTTGAAA+GGG | 0.456078 | 3_4:+52425636 | Msa0506220:CDS |
AGGGTTGCGGAGAGGTTGGT+GGG | 0.456683 | 3_4:+52419831 | Msa0506220:CDS |
TCGGGTGGTGGAATGTCGAG+GGG | 0.456994 | 3_4:+52420104 | Msa0506220:CDS |
AAATCGTGGCAATGAACAAT+TGG | 0.458465 | 3_4:+52420876 | Msa0506220:CDS |
ACTTCTGGAATGAGAGATAA+AGG | 0.459526 | 3_4:+52420913 | Msa0506220:CDS |
GAAAAGGAAATGGACTTCCT+TGG | 0.461062 | 3_4:+52423295 | Msa0506220:CDS |
TTTGAAGAACGCGGAGGAGG+AGG | 0.461533 | 3_4:-52419515 | None:intergenic |
AACATATTTGAATATAGAAA+TGG | 0.466093 | 3_4:+52423548 | Msa0506220:CDS |
AATGATAATGATAATGTTGA+TGG | 0.466238 | 3_4:+52420826 | Msa0506220:CDS |
ACTTGCCCGTCGCATTAAGT+TGG | 0.466520 | 3_4:-52422704 | None:intergenic |
AAATCATGGTAATCAGCAAT+TGG | 0.467432 | 3_4:+52420070 | Msa0506220:CDS |
TTGAATTAGGGGATCGGGAA+CGG | 0.467490 | 3_4:-52419439 | None:intergenic |
TGAAGAGGATTTGGAGGGGA+AGG | 0.471322 | 3_4:+52419730 | Msa0506220:CDS |
TGCTGATGTGAAGAAACTTC+GGG | 0.472208 | 3_4:+52422384 | Msa0506220:CDS |
CACAGGGGAGTTAAACTCTC+TGG | 0.478478 | 3_4:+52422307 | Msa0506220:CDS |
AAGATTTGAGGAAGCGTGAT+GGG | 0.480627 | 3_4:+52420752 | Msa0506220:CDS |
TACTCACCAGACGGATCCTC+GGG | 0.481693 | 3_4:-52419696 | None:intergenic |
TGACGATGATGTAGCATTGA+TGG | 0.482752 | 3_4:+52420849 | Msa0506220:CDS |
TGTCTCTTCTAACATGTGTT+GGG | 0.483761 | 3_4:+52425889 | Msa0506220:CDS |
CTCGGGTGGTGGAATGTCGA+GGG | 0.488513 | 3_4:+52420103 | Msa0506220:CDS |
GAAGAGGATTTGGAGGGGAA+GGG | 0.491160 | 3_4:+52419731 | Msa0506220:CDS |
CGCAACAAAGTCAGCCAAGA+AGG | 0.491405 | 3_4:+52423270 | Msa0506220:CDS |
TACAATTCAGATCTCAAAGT+TGG | 0.491521 | 3_4:-52425671 | None:intergenic |
ATACTCACCAGACGGATCCT+CGG | 0.493420 | 3_4:-52419697 | None:intergenic |
AGATTGAAGCGGTGAGGACG+TGG | 0.494020 | 3_4:-52419539 | None:intergenic |
ATGCGGTTGTTGAAGTGAAG+AGG | 0.497546 | 3_4:+52419871 | Msa0506220:CDS |
CTGTCTCTTCTAACATGTGT+TGG | 0.502528 | 3_4:+52425888 | Msa0506220:CDS |
TTCTATGGAGCTAAAAGCAT+TGG | 0.504441 | 3_4:+52422423 | Msa0506220:CDS |
CGTGAATCGGCGCCGGAGAG+TGG | 0.505542 | 3_4:-52419480 | None:intergenic |
AATTCGCCCGAGGATCCGTC+TGG | 0.508384 | 3_4:+52419690 | Msa0506220:CDS |
GGAGAGTGGAAGTAGGGTTA+GGG | 0.509768 | 3_4:-52419466 | None:intergenic |
CAAGAAGGAAGAAAAGGAAA+TGG | 0.510534 | 3_4:+52423285 | Msa0506220:CDS |
GCTTTGGGATGTTAGGGTTG+CGG | 0.510764 | 3_4:+52419818 | Msa0506220:CDS |
GAACGGTGGTGTTACGGAGG+AGG | 0.514258 | 3_4:-52419422 | None:intergenic |
GCGATGGTTTCGAAGGGGAA+TGG | 0.517229 | 3_4:+52419945 | Msa0506220:CDS |
GACTACCATTACTACAGTTA+GGG | 0.519280 | 3_4:-52422654 | None:intergenic |
CGGCGGTGAAGAGGATTTGG+AGG | 0.520447 | 3_4:+52419724 | Msa0506220:CDS |
ACAAGGAACAGAAGGCTCCT+TGG | 0.522057 | 3_4:-52422620 | None:intergenic |
TGCTGTTGCGGTGGAATGTA+CGG | 0.522490 | 3_4:+52419653 | Msa0506220:CDS |
GTTTCTTGATTTGATTGCGA+TGG | 0.522727 | 3_4:+52419929 | Msa0506220:CDS |
ATATGTTGCTGTAAAAGTCT+AGG | 0.524611 | 3_4:-52423532 | None:intergenic |
GTGCTGATGTGAAGAAACTT+CGG | 0.526628 | 3_4:+52422383 | Msa0506220:CDS |
CCTTGGAAGAAGAGACACTA+AGG | 0.527054 | 3_4:+52423312 | Msa0506220:CDS |
TGTTGGGCGATTGGAACTTA+GGG | 0.530862 | 3_4:+52425905 | Msa0506220:CDS |
GTGTGCAATGCATCAGGAAG+AGG | 0.534240 | 3_4:-52422454 | None:intergenic |
TTCTTATACAGGTTTGGAGA+AGG | 0.534897 | 3_4:+52423494 | Msa0506220:intron |
AGGTGCGCTTTGGGATGTTA+GGG | 0.535657 | 3_4:+52419812 | Msa0506220:CDS |
GGGTTTGAAGAACGCGGAGG+AGG | 0.536346 | 3_4:-52419518 | None:intergenic |
TGCTTACTGTGCTGTTGCGG+TGG | 0.537231 | 3_4:+52419644 | Msa0506220:CDS |
GTCGGAGGAGATGATGCAGT+GGG | 0.537710 | 3_4:+52419776 | Msa0506220:CDS |
TTTGAGACGTGAATCGGCGC+CGG | 0.540038 | 3_4:-52419487 | None:intergenic |
CCTTAGTGTCTCTTCTTCCA+AGG | 0.542109 | 3_4:-52423312 | None:intergenic |
CGGGTGGTGGAATGTCGAGG+GGG | 0.542853 | 3_4:+52420105 | Msa0506220:CDS |
TTGAAGAACGCGGAGGAGGA+GGG | 0.543449 | 3_4:-52419514 | None:intergenic |
CGGAGGAGATGATGCAGTGG+GGG | 0.543627 | 3_4:+52419778 | Msa0506220:CDS |
TGTTGATGCGAATCAGGAAG+TGG | 0.544009 | 3_4:+52420292 | Msa0506220:CDS |
CTTCTTGGCTGACTTTGTTG+CGG | 0.549683 | 3_4:-52423269 | None:intergenic |
TCGCCCCAACTTAATGCGAC+GGG | 0.550818 | 3_4:+52422699 | Msa0506220:CDS |
CGGCGCCGGAGAGTGGAAGT+AGG | 0.551999 | 3_4:-52419473 | None:intergenic |
GAGGATTTGAAGGGAGACTT+CGG | 0.552616 | 3_4:-52419562 | None:intergenic |
AAATCTCTTCAAGATGTTCG+AGG | 0.553739 | 3_4:-52419581 | None:intergenic |
GAAGATTTGAGGAAGCGTGA+TGG | 0.556415 | 3_4:+52420751 | Msa0506220:CDS |
GAAGGTTGTTAGAAGGTTTG+GGG | 0.557542 | 3_4:+52420012 | Msa0506220:CDS |
TTGATTGCGATGGTTTCGAA+GGG | 0.559576 | 3_4:+52419939 | Msa0506220:CDS |
TTTGATTGCGATGGTTTCGA+AGG | 0.560926 | 3_4:+52419938 | Msa0506220:CDS |
AATCAGCAATTGGAAGAGAA+TGG | 0.564895 | 3_4:+52420080 | Msa0506220:CDS |
GAAGAGATTTACCGCGACGA+AGG | 0.567781 | 3_4:+52419594 | Msa0506220:CDS |
GATCGCCCTAACTGTAGTAA+TGG | 0.569075 | 3_4:+52422649 | Msa0506220:CDS |
ACATGTTAGAAGAGACAGTC+GGG | 0.578643 | 3_4:-52425883 | None:intergenic |
CAATTGGAAGAGAATGGCTC+GGG | 0.580408 | 3_4:+52420086 | Msa0506220:CDS |
AAGGAGAAAATGAATGATGA+TGG | 0.580983 | 3_4:+52420793 | Msa0506220:CDS |
ACAACGATGGGTGAAAATCA+TGG | 0.581871 | 3_4:+52420236 | Msa0506220:CDS |
AAAGAGAAAATGAATGATGA+TGG | 0.582298 | 3_4:+52420155 | Msa0506220:CDS |
CAGGAAGTGGAACAGCGAGC+TGG | 0.583358 | 3_4:+52420305 | Msa0506220:CDS |
GAAGAAGAGACACTAAGGGC+TGG | 0.584293 | 3_4:+52423317 | Msa0506220:CDS |
GCAATTGGAAGAGAATGGCT+CGG | 0.584680 | 3_4:+52420085 | Msa0506220:CDS |
GGCGCCGGAGAGTGGAAGTA+GGG | 0.585546 | 3_4:-52419472 | None:intergenic |
GTCGCCCCAACTTAATGCGA+CGG | 0.587509 | 3_4:+52422698 | Msa0506220:CDS |
CGAGCTGGTACTTCTAGTAT+GGG | 0.587659 | 3_4:+52420320 | Msa0506220:CDS |
GGCGGTGAAGAGGATTTGGA+GGG | 0.588504 | 3_4:+52419725 | Msa0506220:CDS |
TTGGAAGAGAATGGCTCGGG+TGG | 0.589660 | 3_4:+52420089 | Msa0506220:CDS |
GACGATCATTACTGTAGTTG+GGG | 0.590844 | 3_4:-52422678 | None:intergenic |
ATTTGAGGAAGCGTGATGGG+AGG | 0.597213 | 3_4:+52420755 | Msa0506220:CDS |
GAGGTTAGAAGGTTTGGGAA+AGG | 0.597583 | 3_4:+52420774 | Msa0506220:CDS |
ATTCAGATCTCAAAGTTGGT+AGG | 0.599024 | 3_4:-52425667 | None:intergenic |
GAGTGCTTACTGTGCTGTTG+CGG | 0.599604 | 3_4:+52419641 | Msa0506220:CDS |
GAAGAATTGGAAGACAGAGT+TGG | 0.600001 | 3_4:+52420263 | Msa0506220:CDS |
GGTGAATGATGATGTAGCAA+TGG | 0.608999 | 3_4:+52420043 | Msa0506220:CDS |
GTAGCAATGGGTGAAAATCA+TGG | 0.609494 | 3_4:+52420056 | Msa0506220:CDS |
AGTTAAACTCTCTGGTGATG+AGG | 0.611191 | 3_4:+52422315 | Msa0506220:CDS |
GGGTTGCGGAGAGGTTGGTG+GGG | 0.611883 | 3_4:+52419832 | Msa0506220:CDS |
GTGAATGATGATGTAGCAAT+GGG | 0.612467 | 3_4:+52420044 | Msa0506220:CDS |
CTAACCCTACTTCCACTCTC+CGG | 0.617416 | 3_4:+52419468 | Msa0506220:CDS |
TGTTTGTGAAAATGCTGCTG+AGG | 0.619713 | 3_4:+52419983 | Msa0506220:CDS |
ATAGAAATTCGGAAAGACAA+TGG | 0.620587 | 3_4:+52422247 | Msa0506220:intron |
TTGCCCGTCGCATTAAGTTG+GGG | 0.621336 | 3_4:-52422702 | None:intergenic |
TCACTACTACAAGGAACAGA+AGG | 0.621390 | 3_4:-52422628 | None:intergenic |
GATGATGGTGATGATGAGAA+TGG | 0.623693 | 3_4:+52420170 | Msa0506220:CDS |
CTACAAAAGATATAAATCGC+AGG | 0.623762 | 3_4:+52422503 | Msa0506220:CDS |
TCGGAGGAGATGATGCAGTG+GGG | 0.627606 | 3_4:+52419777 | Msa0506220:CDS |
GATTGAAGCGGTGAGGACGT+GGG | 0.630623 | 3_4:-52419538 | None:intergenic |
GGTGTTTGTGAAATTGCTGA+AGG | 0.632383 | 3_4:+52420724 | Msa0506220:intron |
GGAGGAGATGATGCAGTGGG+GGG | 0.633051 | 3_4:+52419779 | Msa0506220:CDS |
GTGTTTGTGAAATTGCTGAA+GGG | 0.634138 | 3_4:+52420725 | Msa0506220:CDS |
TGTTTGTGAAATTGCTGAAG+GGG | 0.634167 | 3_4:+52420726 | Msa0506220:CDS |
AATTAGGGGATCGGGAACGG+TGG | 0.641310 | 3_4:-52419436 | None:intergenic |
CGGGAACGGTGGTGTTACGG+AGG | 0.642164 | 3_4:-52419425 | None:intergenic |
AAGATGTTCGAGGATTTGAA+GGG | 0.644288 | 3_4:-52419571 | None:intergenic |
GATGATGATGTGACAACGAT+GGG | 0.644343 | 3_4:+52420224 | Msa0506220:CDS |
CTTGGAAGAAGAGACACTAA+GGG | 0.646858 | 3_4:+52423313 | Msa0506220:CDS |
GTTTGTGAAAATGCTGCTGA+GGG | 0.652459 | 3_4:+52419984 | Msa0506220:CDS |
CTGCGTTCCCAAAACAAGAA+CGG | 0.655309 | 3_4:-52425856 | None:intergenic |
TCTCTGGTGATGAGGAAGCG+AGG | 0.659290 | 3_4:+52422323 | Msa0506220:CDS |
GGAGACTTCGGAGATTGAAG+CGG | 0.660281 | 3_4:-52419550 | None:intergenic |
GATGATGTAGCATTGATGGA+TGG | 0.662441 | 3_4:+52420853 | Msa0506220:CDS |
GGGAATGGTTTGTGTCCGGG+AGG | 0.663088 | 3_4:+52419960 | Msa0506220:CDS |
TTAGGGCGATCACTACTACA+AGG | 0.663670 | 3_4:-52422637 | None:intergenic |
TGTCGGAGGAGATGATGCAG+TGG | 0.665693 | 3_4:+52419775 | Msa0506220:CDS |
TGATTGCGATGGTTTCGAAG+GGG | 0.666531 | 3_4:+52419940 | Msa0506220:CDS |
GCTGGTACTTCTAGTATGGG+AGG | 0.666874 | 3_4:+52420323 | Msa0506220:CDS |
GTTTGTGAAATTGCTGAAGG+GGG | 0.671919 | 3_4:+52420727 | Msa0506220:CDS |
ATATTTGATTAATTCGCCCG+AGG | 0.672056 | 3_4:+52419680 | Msa0506220:CDS |
CACATGTTAGAAGAGACAGT+CGG | 0.680855 | 3_4:-52425884 | None:intergenic |
GTTGAATACAAGGAGAGATG+CGG | 0.690966 | 3_4:+52419854 | Msa0506220:CDS |
CTTCGGAGATTGAAGCGGTG+AGG | 0.694452 | 3_4:-52419545 | None:intergenic |
GGGATGTTAGGGTTGCGGAG+AGG | 0.698750 | 3_4:+52419823 | Msa0506220:CDS |
CAGAGAGTTTAACTCCCCTG+TGG | 0.700791 | 3_4:-52422306 | None:intergenic |
GCATTGATGGATGGAAATCG+TGG | 0.732089 | 3_4:+52420862 | Msa0506220:CDS |
GGACGTGGGTTTGAAGAACG+CGG | 0.739427 | 3_4:-52419524 | None:intergenic |
AGATAGAAACTCCTTCGTCG+CGG | 0.740862 | 3_4:-52419605 | None:intergenic |
GCGGTGAAGAGGATTTGGAG+GGG | 0.745177 | 3_4:+52419726 | Msa0506220:CDS |
CGTGGGTTTGAAGAACGCGG+AGG | 0.751005 | 3_4:-52419521 | None:intergenic |
AAGTTATGCTCAAACATACG+AGG | 0.752222 | 3_4:+52422723 | Msa0506220:CDS |
TGATGATGATGTGACAACGA+TGG | 0.758926 | 3_4:+52420223 | Msa0506220:CDS |
TTTGTGAAAATGCTGCTGAG+GGG | 0.761669 | 3_4:+52419985 | Msa0506220:CDS |
GGTTTGGAGAAGGAAACTGG+AGG | 0.804663 | 3_4:+52423504 | Msa0506220:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGATTTAAATTGTTATTAT+TGG | + | chr3_4:52421045-52421064 | Msa0506220:intron | 10.0% |
!! | AATGTAAATAATAATCAAAT+AGG | - | chr3_4:52422203-52422222 | None:intergenic | 10.0% |
!! | TTTAGTCATTAAATTAAACT+AGG | + | chr3_4:52420544-52420563 | Msa0506220:intron | 15.0% |
!!! | AGGATATTAGAATTTTTATA+AGG | + | chr3_4:52420687-52420706 | Msa0506220:intron | 15.0% |
!!! | GGATATTAGAATTTTTATAA+GGG | + | chr3_4:52420688-52420707 | Msa0506220:intron | 15.0% |
!!! | AATTGTTATTTTTGTAAGTT+TGG | + | chr3_4:52421079-52421098 | Msa0506220:intron | 15.0% |
!! | AATCAATTGTAATGTATATA+CGG | + | chr3_4:52421747-52421766 | Msa0506220:intron | 15.0% |
!! | TATTTAGTCGAAAAATTTAT+CGG | - | chr3_4:52422349-52422368 | None:intergenic | 15.0% |
!!! | GTTTTTTATTATCATTTAGA+TGG | + | chr3_4:52423104-52423123 | Msa0506220:intron | 15.0% |
!! | AACATATTTGAATATAGAAA+TGG | + | chr3_4:52423548-52423567 | Msa0506220:CDS | 15.0% |
!!! | TAAAATTGAAGTGTTATTAA+CGG | - | chr3_4:52423624-52423643 | None:intergenic | 15.0% |
!!! | CACTTCAATTTTATTATTTA+AGG | + | chr3_4:52423631-52423650 | Msa0506220:intron | 15.0% |
!!! | TTTGAAAACTAGATATATTT+TGG | + | chr3_4:52424356-52424375 | Msa0506220:intron | 15.0% |
!!! | GAATTATTATAAACTAGTTT+CGG | - | chr3_4:52425163-52425182 | None:intergenic | 15.0% |
!! | TCATTAAATTAAACTAGGTA+TGG | + | chr3_4:52420549-52420568 | Msa0506220:intron | 20.0% |
!! | TTTAGTTGCAAAAAATTTCT+CGG | + | chr3_4:52420627-52420646 | Msa0506220:intron | 20.0% |
!!! | AATGATAATGATAATGTTGA+TGG | + | chr3_4:52420826-52420845 | Msa0506220:CDS | 20.0% |
!! | AATTTCCTCAAAATAATACT+TGG | + | chr3_4:52420963-52420982 | Msa0506220:intron | 20.0% |
!!! | ATTTGTCATTTGATTGTTTT+GGG | + | chr3_4:52421385-52421404 | Msa0506220:intron | 20.0% |
!! | GATTGTAGATGAATAAATAA+AGG | - | chr3_4:52421707-52421726 | None:intergenic | 20.0% |
!!! | AAAACAATTATTTAAGACAC+CGG | + | chr3_4:52421888-52421907 | Msa0506220:intron | 20.0% |
!! | ATAGCTATCAATTAAAACTA+CGG | + | chr3_4:52422004-52422023 | Msa0506220:intron | 20.0% |
!!! | ACAAACATTTTTATGTTTGT+TGG | + | chr3_4:52422095-52422114 | Msa0506220:intron | 20.0% |
!! | ATTAGAACAGATAATTACAT+AGG | - | chr3_4:52422755-52422774 | None:intergenic | 20.0% |
!!! | TTGAATCATGGTTTTAAAAT+AGG | + | chr3_4:52423027-52423046 | Msa0506220:intron | 20.0% |
!! | TAATAAAAAACAACAGTTGA+GGG | - | chr3_4:52423095-52423114 | None:intergenic | 20.0% |
!! | ATAATAAAAAACAACAGTTG+AGG | - | chr3_4:52423096-52423115 | None:intergenic | 20.0% |
!! | ATTCACTATATTTCTTATAC+AGG | + | chr3_4:52423483-52423502 | Msa0506220:intron | 20.0% |
!! | AATTGCATTTCTAATGTTTA+TGG | + | chr3_4:52423761-52423780 | Msa0506220:intron | 20.0% |
!! | TCTAATGTTTATGGATAATT+TGG | + | chr3_4:52423770-52423789 | Msa0506220:intron | 20.0% |
!! | CTAATGTTTATGGATAATTT+GGG | + | chr3_4:52423771-52423790 | Msa0506220:intron | 20.0% |
!! | TGAACTGAAAAGAAAAAATA+GGG | + | chr3_4:52423894-52423913 | Msa0506220:intron | 20.0% |
!! | TTCAACTTCACTAAAAATTA+TGG | - | chr3_4:52424132-52424151 | None:intergenic | 20.0% |
!! | TAATCTCAAATATCAAACTA+AGG | - | chr3_4:52424158-52424177 | None:intergenic | 20.0% |
!!! | TTTTTGCTTATATTTCATTC+AGG | - | chr3_4:52424230-52424249 | None:intergenic | 20.0% |
!! | GAATGAAATATAAGCAAAAA+CGG | + | chr3_4:52424230-52424249 | Msa0506220:intron | 20.0% |
!! | TCCTGAAATATAAACAAAAA+GGG | - | chr3_4:52424317-52424336 | None:intergenic | 20.0% |
!!! | TTTTTAAGTAGACTTATTTG+AGG | + | chr3_4:52424636-52424655 | Msa0506220:intron | 20.0% |
!!! | ATAATGATAATTTTGATAGC+AGG | + | chr3_4:52424884-52424903 | Msa0506220:intron | 20.0% |
!!! | AACATATATCTGAAGTTTTA+TGG | + | chr3_4:52425117-52425136 | Msa0506220:intron | 20.0% |
!!! | ACTAGTTTATAATAATTCAG+TGG | + | chr3_4:52425165-52425184 | Msa0506220:intron | 20.0% |
!! | TCAGCAAGATAAAAAAATAT+TGG | - | chr3_4:52425255-52425274 | None:intergenic | 20.0% |
!! | ACATTTACATGAAAAACAAA+AGG | - | chr3_4:52425736-52425755 | None:intergenic | 20.0% |
!!! | TCATTTTTTGTGTTTCATGA+TGG | - | chr3_4:52419371-52419390 | None:intergenic | 25.0% |
! | AAACATTACAAACTGGATAA+TGG | + | chr3_4:52419395-52419414 | Msa0506220:CDS | 25.0% |
! | AAAGAGAAAATGAATGATGA+TGG | + | chr3_4:52420155-52420174 | Msa0506220:CDS | 25.0% |
! | AATCACTTCAAAACTAATGT+TGG | + | chr3_4:52420378-52420397 | Msa0506220:intron | 25.0% |
!!! | ATTTTAGTTTTTGCTGTGTA+AGG | + | chr3_4:52420430-52420449 | Msa0506220:intron | 25.0% |
! | AAACAATAGTGTGTATTTGA+AGG | + | chr3_4:52420487-52420506 | Msa0506220:intron | 25.0% |
! | AACAATAGTGTGTATTTGAA+GGG | + | chr3_4:52420488-52420507 | Msa0506220:intron | 25.0% |
! | CATTAGTCATTGTTTAAGTA+AGG | + | chr3_4:52420667-52420686 | Msa0506220:intron | 25.0% |
!!! | AATCTCCAAGTATTATTTTG+AGG | - | chr3_4:52420971-52420990 | None:intergenic | 25.0% |
!! | TTTCTCTTGTGTGTTTTATA+AGG | + | chr3_4:52421227-52421246 | Msa0506220:intron | 25.0% |
! | TTCAATAGTCATTGTTTAAG+TGG | + | chr3_4:52421298-52421317 | Msa0506220:intron | 25.0% |
!! | TGACAAATCTATTTTCTTTG+AGG | - | chr3_4:52421373-52421392 | None:intergenic | 25.0% |
!!! | GATTTGTCATTTGATTGTTT+TGG | + | chr3_4:52421384-52421403 | Msa0506220:intron | 25.0% |
!!! | TCCTACATTTTTTACATTAG+CGG | - | chr3_4:52421553-52421572 | None:intergenic | 25.0% |
! | TAACATATATGTAGTTGTGT+CGG | - | chr3_4:52421578-52421597 | None:intergenic | 25.0% |
! | TATGAGTTATATATAGGTGT+CGG | + | chr3_4:52421833-52421852 | Msa0506220:intron | 25.0% |
! | AATAATAATCAAATAGGCGT+AGG | - | chr3_4:52422197-52422216 | None:intergenic | 25.0% |
!! | TATATCTTTTGTAGCCAATT+TGG | - | chr3_4:52422497-52422516 | None:intergenic | 25.0% |
! | TGTAATTATCTGTTCTAATC+TGG | + | chr3_4:52422756-52422775 | Msa0506220:intron | 25.0% |
! | GTAATTATCTGTTCTAATCT+GGG | + | chr3_4:52422757-52422776 | Msa0506220:intron | 25.0% |
! | TAATTATCTGTTCTAATCTG+GGG | + | chr3_4:52422758-52422777 | Msa0506220:intron | 25.0% |
! | ATATTCATATGTTCTCACTA+AGG | + | chr3_4:52422795-52422814 | Msa0506220:intron | 25.0% |
! | TATTCATATGTTCTCACTAA+GGG | + | chr3_4:52422796-52422815 | Msa0506220:intron | 25.0% |
! | ATAGCTCACTAGAAAATTTA+TGG | - | chr3_4:52423386-52423405 | None:intergenic | 25.0% |
! | CTATATTTCTTATACAGGTT+TGG | + | chr3_4:52423488-52423507 | Msa0506220:intron | 25.0% |
!! | ATTATTTAAGGTTGATCTGA+AGG | + | chr3_4:52423643-52423662 | Msa0506220:intron | 25.0% |
! | CATTAGAAATGCAATTTGAA+AGG | - | chr3_4:52423757-52423776 | None:intergenic | 25.0% |
! | CGTTTAAAAAAGAAAGAATC+AGG | - | chr3_4:52423832-52423851 | None:intergenic | 25.0% |
!!! | TCTTTCTTTTTTAAACGAAG+AGG | + | chr3_4:52423835-52423854 | Msa0506220:intron | 25.0% |
!!! | CTTTCTTTTTTAAACGAAGA+GGG | + | chr3_4:52423836-52423855 | Msa0506220:intron | 25.0% |
!!! | TTTCTTTTTTAAACGAAGAG+GGG | + | chr3_4:52423837-52423856 | Msa0506220:intron | 25.0% |
!!! | TTTTTTCTTTTCAGTTCACA+AGG | - | chr3_4:52423892-52423911 | None:intergenic | 25.0% |
! | GTGAACTGAAAAGAAAAAAT+AGG | + | chr3_4:52423893-52423912 | Msa0506220:intron | 25.0% |
! | TCTGAAAAAATTCAGTACAT+TGG | + | chr3_4:52423953-52423972 | Msa0506220:intron | 25.0% |
! | ACTAAAAATTATGGTCTGAT+TGG | - | chr3_4:52424123-52424142 | None:intergenic | 25.0% |
! | GATGTACTTGTTTAAAAGTT+AGG | + | chr3_4:52424266-52424285 | Msa0506220:intron | 25.0% |
!!! | ACCCTTTTTGTTTATATTTC+AGG | + | chr3_4:52424313-52424332 | Msa0506220:intron | 25.0% |
! | GTCCTGAAATATAAACAAAA+AGG | - | chr3_4:52424318-52424337 | None:intergenic | 25.0% |
!! | GCTCATTAAACAAAAAGTAT+TGG | + | chr3_4:52424683-52424702 | Msa0506220:intron | 25.0% |
!! | TTATAAACTAGTTTCGGAAA+AGG | - | chr3_4:52425157-52425176 | None:intergenic | 25.0% |
! | TCTTGCTGAAAAATCTATTA+TGG | + | chr3_4:52425266-52425285 | Msa0506220:intron | 25.0% |
! | TACAATGCATCAATTTGTAT+GGG | - | chr3_4:52425472-52425491 | None:intergenic | 25.0% |
! | ATACAATGCATCAATTTGTA+TGG | - | chr3_4:52425473-52425492 | None:intergenic | 25.0% |
! | ATAGAATTACAAACATAACC+TGG | + | chr3_4:52425491-52425510 | Msa0506220:intron | 25.0% |
!! | CAAATTGAGTAGTATTTTAC+TGG | + | chr3_4:52425537-52425556 | Msa0506220:intron | 25.0% |
!! | GTTTATCTTTTTGCGAATAT+GGG | + | chr3_4:52425623-52425642 | Msa0506220:CDS | 25.0% |
!! | TTTCATGATGGAAGATTTTG+GGG | - | chr3_4:52419359-52419378 | None:intergenic | 30.0% |
!! | GTTTCATGATGGAAGATTTT+GGG | - | chr3_4:52419360-52419379 | None:intergenic | 30.0% |
!! | TGTTTCATGATGGAAGATTT+TGG | - | chr3_4:52419361-52419380 | None:intergenic | 30.0% |
TGAACGAAAACATTACAAAC+TGG | + | chr3_4:52419388-52419407 | Msa0506220:CDS | 30.0% | |
!!! | GTTAGGGTTTTTTGAATTAG+GGG | - | chr3_4:52419453-52419472 | None:intergenic | 30.0% |
!!! | GGTTAGGGTTTTTTGAATTA+GGG | - | chr3_4:52419454-52419473 | None:intergenic | 30.0% |
AAATCATGGTAATCAGCAAT+TGG | + | chr3_4:52420070-52420089 | Msa0506220:CDS | 30.0% | |
AAATCATGGCAATGAAGAAT+TGG | + | chr3_4:52420250-52420269 | Msa0506220:CDS | 30.0% | |
! | TCTCTCTTGTGTGTTTTATA+AGG | + | chr3_4:52420593-52420612 | Msa0506220:intron | 30.0% |
! | CTCTCTTGTGTGTTTTATAA+GGG | + | chr3_4:52420594-52420613 | Msa0506220:intron | 30.0% |
AAGGAGAAAATGAATGATGA+TGG | + | chr3_4:52420793-52420812 | Msa0506220:CDS | 30.0% | |
ATGCAGTTACTTAAACCTTT+AGG | - | chr3_4:52421141-52421160 | None:intergenic | 30.0% | |
TAATCATGCAACTAGCTATA+TGG | + | chr3_4:52421181-52421200 | Msa0506220:intron | 30.0% | |
AGTCATTGTTTAAGTGGTTA+TGG | + | chr3_4:52421304-52421323 | Msa0506220:intron | 30.0% | |
GTCATTGTTTAAGTGGTTAT+GGG | + | chr3_4:52421305-52421324 | Msa0506220:intron | 30.0% | |
! | TTTGTTTGTGTTGCCTTTTA+AGG | + | chr3_4:52421451-52421470 | Msa0506220:intron | 30.0% |
GATAGTAACAACACCTTAAA+AGG | - | chr3_4:52421467-52421486 | None:intergenic | 30.0% | |
TACTATCAATCTATGAAGCA+TGG | + | chr3_4:52421480-52421499 | Msa0506220:intron | 30.0% | |
ACCGCTAATGTAAAAAATGT+AGG | + | chr3_4:52421549-52421568 | Msa0506220:intron | 30.0% | |
! | TAATTGATAGCTATGAAGCA+CGG | - | chr3_4:52421998-52422017 | None:intergenic | 30.0% |
AACATGACATTGATATCATG+TGG | - | chr3_4:52422072-52422091 | None:intergenic | 30.0% | |
! | CTGTTTCTCCAATAGAAATT+CGG | + | chr3_4:52422236-52422255 | Msa0506220:intron | 30.0% |
TTGTCTTTCCGAATTTCTAT+TGG | - | chr3_4:52422247-52422266 | None:intergenic | 30.0% | |
ATAGAAATTCGGAAAGACAA+TGG | + | chr3_4:52422247-52422266 | Msa0506220:intron | 30.0% | |
CTCCATAGAACTTGATTTAA+GGG | - | chr3_4:52422413-52422432 | None:intergenic | 30.0% | |
CTACAAAAGATATAAATCGC+AGG | + | chr3_4:52422503-52422522 | Msa0506220:CDS | 30.0% | |
AATTATCTGTTCTAATCTGG+GGG | + | chr3_4:52422759-52422778 | Msa0506220:intron | 30.0% | |
!! | ATGGTTCGTAATTTTAGTCA+CGG | - | chr3_4:52422929-52422948 | None:intergenic | 30.0% |
GATTCAACACATTGCATTTA+TGG | - | chr3_4:52423014-52423033 | None:intergenic | 30.0% | |
AAATGCAATGTGTTGAATCA+TGG | + | chr3_4:52423015-52423034 | Msa0506220:intron | 30.0% | |
TTGTATATGTGCCTTCTATT+GGG | + | chr3_4:52423188-52423207 | Msa0506220:intron | 30.0% | |
! | TTATTTCCTTCTTTTTGCAG+TGG | + | chr3_4:52423225-52423244 | Msa0506220:intron | 30.0% |
! | TATTTCCTTCTTTTTGCAGT+GGG | + | chr3_4:52423226-52423245 | Msa0506220:intron | 30.0% |
!! | AATTTTCTAGTGAGCTATCA+TGG | + | chr3_4:52423388-52423407 | Msa0506220:intron | 30.0% |
ATATGTTGCTGTAAAAGTCT+AGG | - | chr3_4:52423535-52423554 | None:intergenic | 30.0% | |
GCTTATTTGAACTTATCTAG+TGG | - | chr3_4:52424096-52424115 | None:intergenic | 30.0% | |
AAATTATGGTCTGATTGGAT+TGG | - | chr3_4:52424118-52424137 | None:intergenic | 30.0% | |
TCTCAAATATCAAACTAAGG+TGG | - | chr3_4:52424155-52424174 | None:intergenic | 30.0% | |
TGCTTATATTTCATTCAGGA+GGG | - | chr3_4:52424226-52424245 | None:intergenic | 30.0% | |
TTGCTTATATTTCATTCAGG+AGG | - | chr3_4:52424227-52424246 | None:intergenic | 30.0% | |
AGACAAGAATGCAGATATAA+AGG | - | chr3_4:52425023-52425042 | None:intergenic | 30.0% | |
! | ATTGAGTAGTATTTTACTGG+TGG | + | chr3_4:52425540-52425559 | Msa0506220:intron | 30.0% |
!! | TGACTTGCTGTATAAATTTC+AGG | + | chr3_4:52425601-52425620 | Msa0506220:intron | 30.0% |
! | GGTTTATCTTTTTGCGAATA+TGG | + | chr3_4:52425622-52425641 | Msa0506220:intron | 30.0% |
TACAATTCAGATCTCAAAGT+TGG | - | chr3_4:52425674-52425693 | None:intergenic | 30.0% | |
!!! | TTCTTTGTTTTTAGCCATCT+AGG | + | chr3_4:52425775-52425794 | Msa0506220:intron | 30.0% |
!!! | TCTTTGTTTTTAGCCATCTA+GGG | + | chr3_4:52425776-52425795 | Msa0506220:intron | 30.0% |
!! | TATTTGAACCGTTCTTGTTT+TGG | + | chr3_4:52425848-52425867 | Msa0506220:CDS | 30.0% |
!!! | ATTTGAACCGTTCTTGTTTT+GGG | + | chr3_4:52425849-52425868 | Msa0506220:CDS | 30.0% |
!!! | GTTTTTTGAATTAGGGGATC+GGG | - | chr3_4:52419447-52419466 | None:intergenic | 35.0% |
!!! | GGTTTTTTGAATTAGGGGAT+CGG | - | chr3_4:52419448-52419467 | None:intergenic | 35.0% |
!!! | GGGTTAGGGTTTTTTGAATT+AGG | - | chr3_4:52419455-52419474 | None:intergenic | 35.0% |
!!! | GGTTTTTTTGAGACGTGAAT+CGG | - | chr3_4:52419496-52419515 | None:intergenic | 35.0% |
AAGATGTTCGAGGATTTGAA+GGG | - | chr3_4:52419574-52419593 | None:intergenic | 35.0% | |
AAATCTCTTCAAGATGTTCG+AGG | - | chr3_4:52419584-52419603 | None:intergenic | 35.0% | |
TTTCTATCTCGAATGCGATT+CGG | + | chr3_4:52419619-52419638 | Msa0506220:CDS | 35.0% | |
ATATTTGATTAATTCGCCCG+AGG | + | chr3_4:52419680-52419699 | Msa0506220:CDS | 35.0% | |
! | TGAAGTGAAGAGGTTTTTGA+AGG | + | chr3_4:52419881-52419900 | Msa0506220:CDS | 35.0% |
! | GTTTCTTGATTTGATTGCGA+TGG | + | chr3_4:52419929-52419948 | Msa0506220:CDS | 35.0% |
TAGAAGGTTGTTAGAAGGTT+TGG | + | chr3_4:52420010-52420029 | Msa0506220:CDS | 35.0% | |
AGAAGGTTGTTAGAAGGTTT+GGG | + | chr3_4:52420011-52420030 | Msa0506220:CDS | 35.0% | |
! | GTGAATGATGATGTAGCAAT+GGG | + | chr3_4:52420044-52420063 | Msa0506220:CDS | 35.0% |
AATCAGCAATTGGAAGAGAA+TGG | + | chr3_4:52420080-52420099 | Msa0506220:CDS | 35.0% | |
TGTTGGAGAGTTGAAAAGTT+TGG | + | chr3_4:52420395-52420414 | Msa0506220:intron | 35.0% | |
!! | TTTTGCTGTGTAAGGTTTGA+TGG | + | chr3_4:52420438-52420457 | Msa0506220:intron | 35.0% |
GTGTTTGTGAAATTGCTGAA+GGG | + | chr3_4:52420725-52420744 | Msa0506220:CDS | 35.0% | |
TGTTTGTGAAATTGCTGAAG+GGG | + | chr3_4:52420726-52420745 | Msa0506220:CDS | 35.0% | |
AAATCGTGGCAATGAACAAT+TGG | + | chr3_4:52420876-52420895 | Msa0506220:CDS | 35.0% | |
!! | ACTTCTGGAATGAGAGATAA+AGG | + | chr3_4:52420913-52420932 | Msa0506220:CDS | 35.0% |
! | GAGTGTATTTGAAGTCCTAA+AGG | + | chr3_4:52421123-52421142 | Msa0506220:intron | 35.0% |
GGTTTAAGTAACTGCATAAG+TGG | + | chr3_4:52421144-52421163 | Msa0506220:intron | 35.0% | |
TAGTGCATATATCGAGAACA+TGG | - | chr3_4:52421274-52421293 | None:intergenic | 35.0% | |
AAGGCAACACAAACAAAGTA+AGG | - | chr3_4:52421448-52421467 | None:intergenic | 35.0% | |
TGTAATGTATATACGGTGTG+TGG | + | chr3_4:52421754-52421773 | Msa0506220:intron | 35.0% | |
GGCTCGTATGAGTTATATAT+AGG | + | chr3_4:52421827-52421846 | Msa0506220:intron | 35.0% | |
GTCCCTTAAATCAAGTTCTA+TGG | + | chr3_4:52422408-52422427 | Msa0506220:CDS | 35.0% | |
GCTCCATAGAACTTGATTTA+AGG | - | chr3_4:52422414-52422433 | None:intergenic | 35.0% | |
! | TTCTATGGAGCTAAAAGCAT+TGG | + | chr3_4:52422423-52422442 | Msa0506220:CDS | 35.0% |
TGTAGCCAATTTGGATCTTA+CGG | - | chr3_4:52422488-52422507 | None:intergenic | 35.0% | |
TTGGCAAAATTGGCATCATT+AGG | - | chr3_4:52422604-52422623 | None:intergenic | 35.0% | |
! | TAATGATGCCAATTTTGCCA+AGG | + | chr3_4:52422603-52422622 | Msa0506220:CDS | 35.0% |
GACTACCATTACTACAGTTA+GGG | - | chr3_4:52422657-52422676 | None:intergenic | 35.0% | |
AAGTTATGCTCAAACATACG+AGG | + | chr3_4:52422723-52422742 | Msa0506220:CDS | 35.0% | |
TTTACAAGACAGCATCCTTT+AGG | - | chr3_4:52422822-52422841 | None:intergenic | 35.0% | |
! | GCAGTATTTAAAACAGTGGT+GGG | - | chr3_4:52422904-52422923 | None:intergenic | 35.0% |
! | AGCAGTATTTAAAACAGTGG+TGG | - | chr3_4:52422905-52422924 | None:intergenic | 35.0% |
TACGAACCATTACACGAAAT+TGG | + | chr3_4:52422939-52422958 | Msa0506220:intron | 35.0% | |
!! | TTGTGTTTGGTGGTTTCTTT+TGG | + | chr3_4:52423138-52423157 | Msa0506220:intron | 35.0% |
CTTGTATATGTGCCTTCTAT+TGG | + | chr3_4:52423187-52423206 | Msa0506220:intron | 35.0% | |
! | CATTTCCTTTTCTTCCTTCT+TGG | - | chr3_4:52423287-52423306 | None:intergenic | 35.0% |
CAAGAAGGAAGAAAAGGAAA+TGG | + | chr3_4:52423285-52423304 | Msa0506220:CDS | 35.0% | |
TTCTTATACAGGTTTGGAGA+AGG | + | chr3_4:52423494-52423513 | Msa0506220:intron | 35.0% | |
ACAAGTGGAGAAATATGATG+CGG | + | chr3_4:52423666-52423685 | Msa0506220:intron | 35.0% | |
CAAGAAAACAATACCTTCCT+AGG | - | chr3_4:52423727-52423746 | None:intergenic | 35.0% | |
! | ATAAATAGTACACCGACTAG+CGG | - | chr3_4:52424746-52424765 | None:intergenic | 35.0% |
CACAGTAACTGAACAAAACA+CGG | - | chr3_4:52424798-52424817 | None:intergenic | 35.0% | |
! | TTTTGTTCAGTTACTGTGTC+AGG | + | chr3_4:52424800-52424819 | Msa0506220:intron | 35.0% |
TTTGTTCAGTTACTGTGTCA+GGG | + | chr3_4:52424801-52424820 | Msa0506220:intron | 35.0% | |
TCCAACTAATGCATATAGTG+AGG | + | chr3_4:52424941-52424960 | Msa0506220:intron | 35.0% | |
ACCTCACTATATGCATTAGT+TGG | - | chr3_4:52424945-52424964 | None:intergenic | 35.0% | |
ATGCAGATATAAAGGAGAAG+TGG | - | chr3_4:52425015-52425034 | None:intergenic | 35.0% | |
ATATCTGCATTCTTGTCTCA+AGG | + | chr3_4:52425025-52425044 | Msa0506220:intron | 35.0% | |
TATCTGCATTCTTGTCTCAA+GGG | + | chr3_4:52425026-52425045 | Msa0506220:intron | 35.0% | |
!! | ATCTGAAGTTTTATGGCTGT+TGG | + | chr3_4:52425124-52425143 | Msa0506220:intron | 35.0% |
!!! | GTATTGAGCTTTTAAGATGC+AGG | - | chr3_4:52425233-52425252 | None:intergenic | 35.0% |
CTATAAAGCTCTACATGGAA+TGG | - | chr3_4:52425308-52425327 | None:intergenic | 35.0% | |
ACAAGCTATAAAGCTCTACA+TGG | - | chr3_4:52425313-52425332 | None:intergenic | 35.0% | |
AAACAGAAGACAGTTATGAC+TGG | + | chr3_4:52425346-52425365 | Msa0506220:intron | 35.0% | |
! | TGTTGTGCATGAAATTTTCG+TGG | + | chr3_4:52425380-52425399 | Msa0506220:intron | 35.0% |
! | GAAATTTTCGTGGCAAGTTT+AGG | + | chr3_4:52425390-52425409 | Msa0506220:intron | 35.0% |
TCAGCTACTAAAATGTATGC+AGG | - | chr3_4:52425434-52425453 | None:intergenic | 35.0% | |
! | ACTCAATTTGTTCAGCAGTT+AGG | - | chr3_4:52425527-52425546 | None:intergenic | 35.0% |
! | AGTAGTATTTTACTGGTGGT+GGG | + | chr3_4:52425544-52425563 | Msa0506220:intron | 35.0% |
! | ATTCAGATCTCAAAGTTGGT+AGG | - | chr3_4:52425670-52425689 | None:intergenic | 35.0% |
TTGATTAGCAATACCCTAGA+TGG | - | chr3_4:52425792-52425811 | None:intergenic | 35.0% | |
TGTCTCTTCTAACATGTGTT+GGG | + | chr3_4:52425889-52425908 | Msa0506220:CDS | 35.0% | |
CAAGATGTTCGAGGATTTGA+AGG | - | chr3_4:52419575-52419594 | None:intergenic | 40.0% | |
! | TCCGTCTGGTGAGTATTTTT+CGG | + | chr3_4:52419704-52419723 | Msa0506220:CDS | 40.0% |
GTTGAATACAAGGAGAGATG+CGG | + | chr3_4:52419854-52419873 | Msa0506220:CDS | 40.0% | |
TTTGATTGCGATGGTTTCGA+AGG | + | chr3_4:52419938-52419957 | Msa0506220:CDS | 40.0% | |
TTGATTGCGATGGTTTCGAA+GGG | + | chr3_4:52419939-52419958 | Msa0506220:CDS | 40.0% | |
TGTTTGTGAAAATGCTGCTG+AGG | + | chr3_4:52419983-52420002 | Msa0506220:CDS | 40.0% | |
GTTTGTGAAAATGCTGCTGA+GGG | + | chr3_4:52419984-52420003 | Msa0506220:CDS | 40.0% | |
TTTGTGAAAATGCTGCTGAG+GGG | + | chr3_4:52419985-52420004 | Msa0506220:CDS | 40.0% | |
GAAGGTTGTTAGAAGGTTTG+GGG | + | chr3_4:52420012-52420031 | Msa0506220:CDS | 40.0% | |
! | GGTGAATGATGATGTAGCAA+TGG | + | chr3_4:52420043-52420062 | Msa0506220:CDS | 40.0% |
GTAGCAATGGGTGAAAATCA+TGG | + | chr3_4:52420056-52420075 | Msa0506220:CDS | 40.0% | |
AATGGGAGAGTAGAAGGTTT+AGG | + | chr3_4:52420131-52420150 | Msa0506220:CDS | 40.0% | |
ATGGGAGAGTAGAAGGTTTA+GGG | + | chr3_4:52420132-52420151 | Msa0506220:CDS | 40.0% | |
! | GATGATGGTGATGATGAGAA+TGG | + | chr3_4:52420170-52420189 | Msa0506220:CDS | 40.0% |
! | TGATGATGATGTGACAACGA+TGG | + | chr3_4:52420223-52420242 | Msa0506220:CDS | 40.0% |
! | GATGATGATGTGACAACGAT+GGG | + | chr3_4:52420224-52420243 | Msa0506220:CDS | 40.0% |
ACAACGATGGGTGAAAATCA+TGG | + | chr3_4:52420236-52420255 | Msa0506220:CDS | 40.0% | |
GAAGAATTGGAAGACAGAGT+TGG | + | chr3_4:52420263-52420282 | Msa0506220:CDS | 40.0% | |
TACTTCTGTTGATGCGAATC+AGG | + | chr3_4:52420286-52420305 | Msa0506220:CDS | 40.0% | |
ATTTCACAAACACCTTCAGG+AGG | - | chr3_4:52420718-52420737 | None:intergenic | 40.0% | |
GCAATTTCACAAACACCTTC+AGG | - | chr3_4:52420721-52420740 | None:intergenic | 40.0% | |
GGTGTTTGTGAAATTGCTGA+AGG | + | chr3_4:52420724-52420743 | Msa0506220:intron | 40.0% | |
GTTTGTGAAATTGCTGAAGG+GGG | + | chr3_4:52420727-52420746 | Msa0506220:CDS | 40.0% | |
! | AAGATTTGAGGAAGCGTGAT+GGG | + | chr3_4:52420752-52420771 | Msa0506220:CDS | 40.0% |
! | TGACGATGATGTAGCATTGA+TGG | + | chr3_4:52420849-52420868 | Msa0506220:CDS | 40.0% |
!! | GATGATGTAGCATTGATGGA+TGG | + | chr3_4:52420853-52420872 | Msa0506220:CDS | 40.0% |
TACTTCGACACTCCTACAAT+CGG | - | chr3_4:52421862-52421881 | None:intergenic | 40.0% | |
TGCACTACAAAAAAGCCACA+GGG | + | chr3_4:52422291-52422310 | Msa0506220:CDS | 40.0% | |
! | AGTTAAACTCTCTGGTGATG+AGG | + | chr3_4:52422315-52422334 | Msa0506220:CDS | 40.0% |
! | GTGCTGATGTGAAGAAACTT+CGG | + | chr3_4:52422383-52422402 | Msa0506220:CDS | 40.0% |
TGCTGATGTGAAGAAACTTC+GGG | + | chr3_4:52422384-52422403 | Msa0506220:CDS | 40.0% | |
TGAAGCCGTAAGATCCAAAT+TGG | + | chr3_4:52422480-52422499 | Msa0506220:CDS | 40.0% | |
!! | ATGTTCACTCTGCTTTTCAC+TGG | - | chr3_4:52422533-52422552 | None:intergenic | 40.0% |
TTGGCATCATTAGGCTGATA+TGG | - | chr3_4:52422595-52422614 | None:intergenic | 40.0% | |
TCACTACTACAAGGAACAGA+AGG | - | chr3_4:52422631-52422650 | None:intergenic | 40.0% | |
CGACTACCATTACTACAGTT+AGG | - | chr3_4:52422658-52422677 | None:intergenic | 40.0% | |
GACGATCATTACTGTAGTTG+GGG | - | chr3_4:52422681-52422700 | None:intergenic | 40.0% | |
CGACGATCATTACTGTAGTT+GGG | - | chr3_4:52422682-52422701 | None:intergenic | 40.0% | |
! | GGCAGCAGTATTTAAAACAG+TGG | - | chr3_4:52422908-52422927 | None:intergenic | 40.0% |
TCAACGCCAATTTCGTGTAA+TGG | - | chr3_4:52422948-52422967 | None:intergenic | 40.0% | |
ATTACACGAAATTGGCGTTG+AGG | + | chr3_4:52422947-52422966 | Msa0506220:intron | 40.0% | |
GGTTAAGAGTCTCTTGTGTT+TGG | + | chr3_4:52423125-52423144 | Msa0506220:intron | 40.0% | |
TAAGAGTCTCTTGTGTTTGG+TGG | + | chr3_4:52423128-52423147 | Msa0506220:intron | 40.0% | |
!! | GTGGTTTCTTTTGGTTGTTG+TGG | + | chr3_4:52423147-52423166 | Msa0506220:intron | 40.0% |
ATCATCCCACTGCAAAAAGA+AGG | - | chr3_4:52423234-52423253 | None:intergenic | 40.0% | |
! | GAAAAGGAAATGGACTTCCT+TGG | + | chr3_4:52423295-52423314 | Msa0506220:CDS | 40.0% |
CTTCCTAGGATATATGCACA+GGG | - | chr3_4:52423713-52423732 | None:intergenic | 40.0% | |
! | TTTTAAACGAAGAGGGGTAG+AGG | + | chr3_4:52423843-52423862 | Msa0506220:intron | 40.0% |
CTGAACTTGACGATGTTTCA+AGG | + | chr3_4:52424384-52424403 | Msa0506220:intron | 40.0% | |
! | CCGAAACTTTAGGAAGAATG+GGG | - | chr3_4:52424723-52424742 | None:intergenic | 40.0% |
CCCCATTCTTCCTAAAGTTT+CGG | + | chr3_4:52424720-52424739 | Msa0506220:intron | 40.0% | |
! | GCCGAAACTTTAGGAAGAAT+GGG | - | chr3_4:52424724-52424743 | None:intergenic | 40.0% |
AATGCATATAGTGAGGTGTG+AGG | + | chr3_4:52424948-52424967 | Msa0506220:intron | 40.0% | |
! | TGGGTTCTAACATGGACTTT+GGG | - | chr3_4:52424986-52425005 | None:intergenic | 40.0% |
AAAGGAGAAGTGGTTTGAGT+GGG | - | chr3_4:52425005-52425024 | None:intergenic | 40.0% | |
TAAAGGAGAAGTGGTTTGAG+TGG | - | chr3_4:52425006-52425025 | None:intergenic | 40.0% | |
TAAGGTTAGACTCTAAGTGC+AGG | + | chr3_4:52425074-52425093 | Msa0506220:intron | 40.0% | |
CTCTACATGGAATGGTTAAG+TGG | - | chr3_4:52425300-52425319 | None:intergenic | 40.0% | |
! | AAGACAGTTATGACTGGTTG+AGG | + | chr3_4:52425352-52425371 | Msa0506220:intron | 40.0% |
CAGTTAGGAACTACAAAACC+AGG | - | chr3_4:52425512-52425531 | None:intergenic | 40.0% | |
! | GAGTAGTATTTTACTGGTGG+TGG | + | chr3_4:52425543-52425562 | Msa0506220:intron | 40.0% |
!! | GTAGTATTTTACTGGTGGTG+GGG | + | chr3_4:52425545-52425564 | Msa0506220:intron | 40.0% |
! | GCAAGTCAGTATACCTTTTC+TGG | - | chr3_4:52425589-52425608 | None:intergenic | 40.0% |
CGAATATGGGCAACTTGAAA+GGG | + | chr3_4:52425636-52425655 | Msa0506220:CDS | 40.0% | |
ACATGTTAGAAGAGACAGTC+GGG | - | chr3_4:52425886-52425905 | None:intergenic | 40.0% | |
CACATGTTAGAAGAGACAGT+CGG | - | chr3_4:52425887-52425906 | None:intergenic | 40.0% | |
CTGTCTCTTCTAACATGTGT+TGG | + | chr3_4:52425888-52425907 | Msa0506220:CDS | 40.0% | |
TTGAATTAGGGGATCGGGAA+CGG | - | chr3_4:52419442-52419461 | None:intergenic | 45.0% | |
GAGGATTTGAAGGGAGACTT+CGG | - | chr3_4:52419565-52419584 | None:intergenic | 45.0% | |
AGATAGAAACTCCTTCGTCG+CGG | - | chr3_4:52419608-52419627 | None:intergenic | 45.0% | |
GCCGAAAAATACTCACCAGA+CGG | - | chr3_4:52419708-52419727 | None:intergenic | 45.0% | |
!! | GTCTGGTGAGTATTTTTCGG+CGG | + | chr3_4:52419707-52419726 | Msa0506220:CDS | 45.0% |
!! | AGTATTTTTCGGCGGTGAAG+AGG | + | chr3_4:52419715-52419734 | Msa0506220:CDS | 45.0% |
! | AAGAGATTGAAGGTGCGCTT+TGG | + | chr3_4:52419802-52419821 | Msa0506220:CDS | 45.0% |
! | AGAGATTGAAGGTGCGCTTT+GGG | + | chr3_4:52419803-52419822 | Msa0506220:CDS | 45.0% |
ATGCGGTTGTTGAAGTGAAG+AGG | + | chr3_4:52419871-52419890 | Msa0506220:CDS | 45.0% | |
!! | AGAGGTTTTTGAAGGAAGCG+TGG | + | chr3_4:52419889-52419908 | Msa0506220:CDS | 45.0% |
!! | GAGGTTTTTGAAGGAAGCGT+GGG | + | chr3_4:52419890-52419909 | Msa0506220:CDS | 45.0% |
!! | AGGTTTTTGAAGGAAGCGTG+GGG | + | chr3_4:52419891-52419910 | Msa0506220:CDS | 45.0% |
TGATTGCGATGGTTTCGAAG+GGG | + | chr3_4:52419940-52419959 | Msa0506220:CDS | 45.0% | |
! | GCATTTTCACAAACACCTCC+CGG | - | chr3_4:52419978-52419997 | None:intergenic | 45.0% |
GGGAGTAGAAGGTTGTTAGA+AGG | + | chr3_4:52420005-52420024 | Msa0506220:CDS | 45.0% | |
GCAATTGGAAGAGAATGGCT+CGG | + | chr3_4:52420085-52420104 | Msa0506220:CDS | 45.0% | |
CAATTGGAAGAGAATGGCTC+GGG | + | chr3_4:52420086-52420105 | Msa0506220:CDS | 45.0% | |
TGTTGATGCGAATCAGGAAG+TGG | + | chr3_4:52420292-52420311 | Msa0506220:CDS | 45.0% | |
CGAGCTGGTACTTCTAGTAT+GGG | + | chr3_4:52420320-52420339 | Msa0506220:CDS | 45.0% | |
GGTTTGAGTAGCTGCATAAG+TGG | + | chr3_4:52420509-52420528 | Msa0506220:intron | 45.0% | |
TATAAGGGTTTGCCTCCTGA+AGG | + | chr3_4:52420703-52420722 | Msa0506220:intron | 45.0% | |
! | GAAGATTTGAGGAAGCGTGA+TGG | + | chr3_4:52420751-52420770 | Msa0506220:CDS | 45.0% |
TGATGGGAGGTTAGAAGGTT+TGG | + | chr3_4:52420768-52420787 | Msa0506220:CDS | 45.0% | |
GATGGGAGGTTAGAAGGTTT+GGG | + | chr3_4:52420769-52420788 | Msa0506220:CDS | 45.0% | |
GAGGTTAGAAGGTTTGGGAA+AGG | + | chr3_4:52420774-52420793 | Msa0506220:CDS | 45.0% | |
! | GCATTGATGGATGGAAATCG+TGG | + | chr3_4:52420862-52420881 | Msa0506220:CDS | 45.0% |
ATAACTCATACGAGCCGTGT+CGG | - | chr3_4:52421823-52421842 | None:intergenic | 45.0% | |
ATGTGTCGTACGAGTGTCAT+AGG | + | chr3_4:52421917-52421936 | Msa0506220:intron | 45.0% | |
! | TACGAGTGTCATAGGAGTGT+CGG | + | chr3_4:52421925-52421944 | Msa0506220:intron | 45.0% |
TCTTATTCCCTACCCATTGC+AGG | + | chr3_4:52422039-52422058 | Msa0506220:intron | 45.0% | |
CAATAGTCCTGCAATGGGTA+GGG | - | chr3_4:52422049-52422068 | None:intergenic | 45.0% | |
TGTGGCAATAGTCCTGCAAT+GGG | - | chr3_4:52422054-52422073 | None:intergenic | 45.0% | |
ATGTGGCAATAGTCCTGCAA+TGG | - | chr3_4:52422055-52422074 | None:intergenic | 45.0% | |
CTGCACTACAAAAAAGCCAC+AGG | + | chr3_4:52422290-52422309 | Msa0506220:CDS | 45.0% | |
GCACTACAAAAAAGCCACAG+GGG | + | chr3_4:52422292-52422311 | Msa0506220:CDS | 45.0% | |
TCAGATGTGTGCAATGCATC+AGG | - | chr3_4:52422463-52422482 | None:intergenic | 45.0% | |
AGAAGGCTCCTTGGCAAAAT+TGG | - | chr3_4:52422614-52422633 | None:intergenic | 45.0% | |
TTAGGGCGATCACTACTACA+AGG | - | chr3_4:52422640-52422659 | None:intergenic | 45.0% | |
GATCGCCCTAACTGTAGTAA+TGG | + | chr3_4:52422649-52422668 | Msa0506220:CDS | 45.0% | |
GCGACGATCATTACTGTAGT+TGG | - | chr3_4:52422683-52422702 | None:intergenic | 45.0% | |
TATCTGTTCTAATCTGGGGG+TGG | + | chr3_4:52422762-52422781 | Msa0506220:intron | 45.0% | |
TGTTCTCACTAAGGGCCTAA+AGG | + | chr3_4:52422804-52422823 | Msa0506220:intron | 45.0% | |
!! | TCATGATGCTTGCTGTCTCT+TGG | + | chr3_4:52422853-52422872 | Msa0506220:intron | 45.0% |
TGAACATCTGCAGAATCCAC+AGG | - | chr3_4:52423072-52423091 | None:intergenic | 45.0% | |
ATGTGCCTTCTATTGGGCAT+TGG | + | chr3_4:52423194-52423213 | Msa0506220:intron | 45.0% | |
ATGTGCCAATGCCCAATAGA+AGG | - | chr3_4:52423202-52423221 | None:intergenic | 45.0% | |
! | CTTCTTGGCTGACTTTGTTG+CGG | - | chr3_4:52423272-52423291 | None:intergenic | 45.0% |
GTCAGCCAAGAAGGAAGAAA+AGG | + | chr3_4:52423279-52423298 | Msa0506220:CDS | 45.0% | |
ACAGGTTTGGAGAAGGAAAC+TGG | + | chr3_4:52423501-52423520 | Msa0506220:intron | 45.0% | |
! | AGGTTGATCTGAAGGACAAG+TGG | + | chr3_4:52423651-52423670 | Msa0506220:intron | 45.0% |
CATCCCTGTGCATATATCCT+AGG | + | chr3_4:52423707-52423726 | Msa0506220:intron | 45.0% | |
CCTTCCTAGGATATATGCAC+AGG | - | chr3_4:52423714-52423733 | None:intergenic | 45.0% | |
CCTGTGCATATATCCTAGGA+AGG | + | chr3_4:52423711-52423730 | Msa0506220:intron | 45.0% | |
TAGGAAGAATGGGGTAGCTT+TGG | - | chr3_4:52424714-52424733 | None:intergenic | 45.0% | |
! | GGCCGAAACTTTAGGAAGAA+TGG | - | chr3_4:52424725-52424744 | None:intergenic | 45.0% |
! | GTGGGTTCTAACATGGACTT+TGG | - | chr3_4:52424987-52425006 | None:intergenic | 45.0% |
! | GGTTTGAGTGGGTTCTAACA+TGG | - | chr3_4:52424994-52425013 | None:intergenic | 45.0% |
ATTCTTGTCTCAAGGGCTCA+GGG | + | chr3_4:52425033-52425052 | Msa0506220:intron | 45.0% | |
CTCAGGGCTCATCTTAACTA+AGG | + | chr3_4:52425056-52425075 | Msa0506220:intron | 45.0% | |
GGAATGGTTAAGTGGCAAGT+AGG | - | chr3_4:52425292-52425311 | None:intergenic | 45.0% | |
GTGCTGAATCTTGCCAGAAA+AGG | + | chr3_4:52425573-52425592 | Msa0506220:intron | 45.0% | |
GCGAATATGGGCAACTTGAA+AGG | + | chr3_4:52425635-52425654 | Msa0506220:CDS | 45.0% | |
CTGCGTTCCCAAAACAAGAA+CGG | - | chr3_4:52425859-52425878 | None:intergenic | 45.0% | |
!!! | TCTTGTTTTGGGAACGCAGT+TGG | + | chr3_4:52425860-52425879 | Msa0506220:CDS | 45.0% |
TCTAACATGTGTTGGGCGAT+TGG | + | chr3_4:52425896-52425915 | Msa0506220:CDS | 45.0% | |
!! | ATGATTTAAATTATAATTAT+CGG | + | chr3_4:52420463-52420482 | Msa0506220:intron | 5.0% |
!!! | TATAAAATTTTAATCTTAAA+TGG | + | chr3_4:52421409-52421428 | Msa0506220:intron | 5.0% |
!!! | ATAAAATTTTAATCTTAAAT+GGG | + | chr3_4:52421410-52421429 | Msa0506220:intron | 5.0% |
GGAGAGTGGAAGTAGGGTTA+GGG | - | chr3_4:52419469-52419488 | None:intergenic | 50.0% | |
CTAACCCTACTTCCACTCTC+CGG | + | chr3_4:52419468-52419487 | Msa0506220:CDS | 50.0% | |
GGAGACTTCGGAGATTGAAG+CGG | - | chr3_4:52419553-52419572 | None:intergenic | 50.0% | |
GAAGAGATTTACCGCGACGA+AGG | + | chr3_4:52419594-52419613 | Msa0506220:CDS | 50.0% | |
! | GAGTGCTTACTGTGCTGTTG+CGG | + | chr3_4:52419641-52419660 | Msa0506220:CDS | 50.0% |
TGCTGTTGCGGTGGAATGTA+CGG | + | chr3_4:52419653-52419672 | Msa0506220:CDS | 50.0% | |
ATACTCACCAGACGGATCCT+CGG | - | chr3_4:52419700-52419719 | None:intergenic | 50.0% | |
TTTCGGCGGTGAAGAGGATT+TGG | + | chr3_4:52419721-52419740 | Msa0506220:CDS | 50.0% | |
TGAAGAGGATTTGGAGGGGA+AGG | + | chr3_4:52419730-52419749 | Msa0506220:CDS | 50.0% | |
GAAGAGGATTTGGAGGGGAA+GGG | + | chr3_4:52419731-52419750 | Msa0506220:CDS | 50.0% | |
!! | AAGGTGCGCTTTGGGATGTT+AGG | + | chr3_4:52419811-52419830 | Msa0506220:CDS | 50.0% |
!! | AGGTGCGCTTTGGGATGTTA+GGG | + | chr3_4:52419812-52419831 | Msa0506220:CDS | 50.0% |
!! | GCTTTGGGATGTTAGGGTTG+CGG | + | chr3_4:52419818-52419837 | Msa0506220:CDS | 50.0% |
!! | GGTTGGTGGGGTTGAATACA+AGG | + | chr3_4:52419844-52419863 | Msa0506220:CDS | 50.0% |
!! | GGTTTTTGAAGGAAGCGTGG+GGG | + | chr3_4:52419892-52419911 | Msa0506220:CDS | 50.0% |
! | GAAGGGGAATGGTTTGTGTC+CGG | + | chr3_4:52419956-52419975 | Msa0506220:CDS | 50.0% |
! | AAGGGGAATGGTTTGTGTCC+GGG | + | chr3_4:52419957-52419976 | Msa0506220:CDS | 50.0% |
AGAAGGTTTGGGGAAAGAGC+AGG | + | chr3_4:52420022-52420041 | Msa0506220:CDS | 50.0% | |
GCGAGCTGGTACTTCTAGTA+TGG | + | chr3_4:52420319-52420338 | Msa0506220:CDS | 50.0% | |
GCTGGTACTTCTAGTATGGG+AGG | + | chr3_4:52420323-52420342 | Msa0506220:CDS | 50.0% | |
CTGAAGGGGGTGAAGATTTG+AGG | + | chr3_4:52420740-52420759 | Msa0506220:CDS | 50.0% | |
! | ATTTGAGGAAGCGTGATGGG+AGG | + | chr3_4:52420755-52420774 | Msa0506220:CDS | 50.0% |
! | AAGCGTGATGGGAGGTTAGA+AGG | + | chr3_4:52420763-52420782 | Msa0506220:CDS | 50.0% |
GAAGTGAGAGTTCGCACTTC+TGG | + | chr3_4:52420898-52420917 | Msa0506220:CDS | 50.0% | |
ATGAAGCATGGACTCCGACA+CGG | + | chr3_4:52421492-52421511 | Msa0506220:intron | 50.0% | |
TTTGTCTGCGTTGTCCGACA+CGG | + | chr3_4:52421806-52421825 | Msa0506220:intron | 50.0% | |
TCGTACGACACATGTCGAAC+CGG | - | chr3_4:52421910-52421929 | None:intergenic | 50.0% | |
TATGAAGCACGGACACCTCT+AGG | - | chr3_4:52421987-52422006 | None:intergenic | 50.0% | |
GCAATAGTCCTGCAATGGGT+AGG | - | chr3_4:52422050-52422069 | None:intergenic | 50.0% | |
CAGAGAGTTTAACTCCCCTG+TGG | - | chr3_4:52422309-52422328 | None:intergenic | 50.0% | |
CACAGGGGAGTTAAACTCTC+TGG | + | chr3_4:52422307-52422326 | Msa0506220:CDS | 50.0% | |
GTGTGCAATGCATCAGGAAG+AGG | - | chr3_4:52422457-52422476 | None:intergenic | 50.0% | |
!! | TCACTCTGCTTTTCACTGGC+TGG | - | chr3_4:52422529-52422548 | None:intergenic | 50.0% |
ACAAGGAACAGAAGGCTCCT+TGG | - | chr3_4:52422623-52422642 | None:intergenic | 50.0% | |
! | TTGCCCGTCGCATTAAGTTG+GGG | - | chr3_4:52422705-52422724 | None:intergenic | 50.0% |
CTTGCCCGTCGCATTAAGTT+GGG | - | chr3_4:52422706-52422725 | None:intergenic | 50.0% | |
ACTTGCCCGTCGCATTAAGT+TGG | - | chr3_4:52422707-52422726 | None:intergenic | 50.0% | |
!! | TGATGCTTGCTGTCTCTTGG+AGG | + | chr3_4:52422856-52422875 | Msa0506220:intron | 50.0% |
TGACTGACTGCACTTGTGTG+CGG | + | chr3_4:52422976-52422995 | Msa0506220:intron | 50.0% | |
AATCCACAGGCCACTACATC+TGG | - | chr3_4:52423059-52423078 | None:intergenic | 50.0% | |
CGCAACAAAGTCAGCCAAGA+AGG | + | chr3_4:52423270-52423289 | Msa0506220:CDS | 50.0% | |
GGTTTGGAGAAGGAAACTGG+AGG | + | chr3_4:52423504-52423523 | Msa0506220:intron | 50.0% | |
CTAAAGTTTCGGCCGCTAGT+CGG | + | chr3_4:52424731-52424750 | Msa0506220:intron | 50.0% | |
!! | ATGGACTTTGGGTTGCCAGT+TGG | - | chr3_4:52424975-52424994 | None:intergenic | 50.0% |
CATTCTTGTCTCAAGGGCTC+AGG | + | chr3_4:52425032-52425051 | Msa0506220:intron | 50.0% | |
!!! | GTATTTTACTGGTGGTGGGG+AGG | + | chr3_4:52425548-52425567 | Msa0506220:intron | 50.0% |
! | GATCGGGAACGGTGGTGTTA+CGG | - | chr3_4:52419431-52419450 | None:intergenic | 55.0% |
AATTAGGGGATCGGGAACGG+TGG | - | chr3_4:52419439-52419458 | None:intergenic | 55.0% | |
CGGAGAGTGGAAGTAGGGTT+AGG | - | chr3_4:52419470-52419489 | None:intergenic | 55.0% | |
! | TTTGAGACGTGAATCGGCGC+CGG | - | chr3_4:52419490-52419509 | None:intergenic | 55.0% |
TTGAAGAACGCGGAGGAGGA+GGG | - | chr3_4:52419517-52419536 | None:intergenic | 55.0% | |
TTTGAAGAACGCGGAGGAGG+AGG | - | chr3_4:52419518-52419537 | None:intergenic | 55.0% | |
GGACGTGGGTTTGAAGAACG+CGG | - | chr3_4:52419527-52419546 | None:intergenic | 55.0% | |
GATTGAAGCGGTGAGGACGT+GGG | - | chr3_4:52419541-52419560 | None:intergenic | 55.0% | |
AGATTGAAGCGGTGAGGACG+TGG | - | chr3_4:52419542-52419561 | None:intergenic | 55.0% | |
CTTCGGAGATTGAAGCGGTG+AGG | - | chr3_4:52419548-52419567 | None:intergenic | 55.0% | |
! | TGCTTACTGTGCTGTTGCGG+TGG | + | chr3_4:52419644-52419663 | Msa0506220:CDS | 55.0% |
TACTCACCAGACGGATCCTC+GGG | - | chr3_4:52419699-52419718 | None:intergenic | 55.0% | |
GGCGGTGAAGAGGATTTGGA+GGG | + | chr3_4:52419725-52419744 | Msa0506220:CDS | 55.0% | |
GCGGTGAAGAGGATTTGGAG+GGG | + | chr3_4:52419726-52419745 | Msa0506220:CDS | 55.0% | |
TGTCGGAGGAGATGATGCAG+TGG | + | chr3_4:52419775-52419794 | Msa0506220:CDS | 55.0% | |
GTCGGAGGAGATGATGCAGT+GGG | + | chr3_4:52419776-52419795 | Msa0506220:CDS | 55.0% | |
TCGGAGGAGATGATGCAGTG+GGG | + | chr3_4:52419777-52419796 | Msa0506220:CDS | 55.0% | |
CAGTGGGGGGAAGAGATTGA+AGG | + | chr3_4:52419792-52419811 | Msa0506220:CDS | 55.0% | |
TGTTAGGGTTGCGGAGAGGT+TGG | + | chr3_4:52419827-52419846 | Msa0506220:CDS | 55.0% | |
! | AAGGAAGCGTGGGGGAGTAT+GGG | + | chr3_4:52419900-52419919 | Msa0506220:CDS | 55.0% |
GCGATGGTTTCGAAGGGGAA+TGG | + | chr3_4:52419945-52419964 | Msa0506220:CDS | 55.0% | |
ATGCTGCTGAGGGGAGTAGA+AGG | + | chr3_4:52419994-52420013 | Msa0506220:CDS | 55.0% | |
! | TTGGAAGAGAATGGCTCGGG+TGG | + | chr3_4:52420089-52420108 | Msa0506220:CDS | 55.0% |
! | GAATGTCGAGGGGGCGTAAT+GGG | + | chr3_4:52420114-52420133 | Msa0506220:CDS | 55.0% |
! | GGGCGTAATGGGAGAGTAGA+AGG | + | chr3_4:52420125-52420144 | Msa0506220:CDS | 55.0% |
CACCTGACACGACACTGACA+CGG | + | chr3_4:52421516-52421535 | Msa0506220:intron | 55.0% | |
!! | AGGTGTCGGACACCGATTGT+AGG | + | chr3_4:52421847-52421866 | Msa0506220:intron | 55.0% |
! | TCTCTGGTGATGAGGAAGCG+AGG | + | chr3_4:52422323-52422342 | Msa0506220:CDS | 55.0% |
GTCGCCCCAACTTAATGCGA+CGG | + | chr3_4:52422698-52422717 | Msa0506220:CDS | 55.0% | |
TCGCCCCAACTTAATGCGAC+GGG | + | chr3_4:52422699-52422718 | Msa0506220:CDS | 55.0% | |
TAGGCCACCACCAGATGTAG+TGG | + | chr3_4:52423046-52423065 | Msa0506220:intron | 55.0% | |
CGACTAGCGGCCGAAACTTT+AGG | - | chr3_4:52424733-52424752 | None:intergenic | 55.0% | |
AGTGAGGTGTGAGGTCCAAC+TGG | + | chr3_4:52424957-52424976 | Msa0506220:intron | 55.0% | |
!! | GAACGGTGGTGTTACGGAGG+AGG | - | chr3_4:52419425-52419444 | None:intergenic | 60.0% |
GGGTTTGAAGAACGCGGAGG+AGG | - | chr3_4:52419521-52419540 | None:intergenic | 60.0% | |
CGTGGGTTTGAAGAACGCGG+AGG | - | chr3_4:52419524-52419543 | None:intergenic | 60.0% | |
AATTCGCCCGAGGATCCGTC+TGG | + | chr3_4:52419690-52419709 | Msa0506220:CDS | 60.0% | |
CGGCGGTGAAGAGGATTTGG+AGG | + | chr3_4:52419724-52419743 | Msa0506220:CDS | 60.0% | |
GGATTTGGAGGGGAAGGGAG+AGG | + | chr3_4:52419736-52419755 | Msa0506220:CDS | 60.0% | |
TTTGGAGGGGAAGGGAGAGG+CGG | + | chr3_4:52419739-52419758 | Msa0506220:CDS | 60.0% | |
CGGAGGAGATGATGCAGTGG+GGG | + | chr3_4:52419778-52419797 | Msa0506220:CDS | 60.0% | |
GGAGGAGATGATGCAGTGGG+GGG | + | chr3_4:52419779-52419798 | Msa0506220:CDS | 60.0% | |
GGGATGTTAGGGTTGCGGAG+AGG | + | chr3_4:52419823-52419842 | Msa0506220:CDS | 60.0% | |
TAGGGTTGCGGAGAGGTTGG+TGG | + | chr3_4:52419830-52419849 | Msa0506220:CDS | 60.0% | |
! | AGGGTTGCGGAGAGGTTGGT+GGG | + | chr3_4:52419831-52419850 | Msa0506220:CDS | 60.0% |
! | GAAGGAAGCGTGGGGGAGTA+TGG | + | chr3_4:52419899-52419918 | Msa0506220:CDS | 60.0% |
! | AGGAAGCGTGGGGGAGTATG+GGG | + | chr3_4:52419901-52419920 | Msa0506220:CDS | 60.0% |
! | GGGAATGGTTTGTGTCCGGG+AGG | + | chr3_4:52419960-52419979 | Msa0506220:CDS | 60.0% |
! | GAAGAGAATGGCTCGGGTGG+TGG | + | chr3_4:52420092-52420111 | Msa0506220:CDS | 60.0% |
!! | CTCGGGTGGTGGAATGTCGA+GGG | + | chr3_4:52420103-52420122 | Msa0506220:CDS | 60.0% |
!! | TCGGGTGGTGGAATGTCGAG+GGG | + | chr3_4:52420104-52420123 | Msa0506220:CDS | 60.0% |
! | GGAATGTCGAGGGGGCGTAA+TGG | + | chr3_4:52420113-52420132 | Msa0506220:CDS | 60.0% |
CAGGAAGTGGAACAGCGAGC+TGG | + | chr3_4:52420305-52420324 | Msa0506220:CDS | 60.0% | |
GTCGTGTCAGGTGTCCGTGT+CGG | - | chr3_4:52421509-52421528 | None:intergenic | 60.0% | |
GTCCGTGTCAGTGTCGTGTC+AGG | - | chr3_4:52421521-52421540 | None:intergenic | 60.0% | |
TGTCGGACACCGACACGTGT+CGG | + | chr3_4:52421942-52421961 | Msa0506220:intron | 60.0% | |
CAGGCCACTACATCTGGTGG+TGG | - | chr3_4:52423053-52423072 | None:intergenic | 60.0% | |
CCACAGGCCACTACATCTGG+TGG | - | chr3_4:52423056-52423075 | None:intergenic | 60.0% | |
CCACCAGATGTAGTGGCCTG+TGG | + | chr3_4:52423053-52423072 | Msa0506220:intron | 60.0% | |
TCTCAAGGGCTCAGGGCTCA+GGG | + | chr3_4:52425040-52425059 | Msa0506220:intron | 60.0% | |
!! | CGGGAACGGTGGTGTTACGG+AGG | - | chr3_4:52419428-52419447 | None:intergenic | 65.0% |
! | GGCGCCGGAGAGTGGAAGTA+GGG | - | chr3_4:52419475-52419494 | None:intergenic | 65.0% |
TTGGAGGGGAAGGGAGAGGC+GGG | + | chr3_4:52419740-52419759 | Msa0506220:CDS | 65.0% | |
!! | GGGTTGCGGAGAGGTTGGTG+GGG | + | chr3_4:52419832-52419851 | Msa0506220:CDS | 65.0% |
! | GGAAGCGTGGGGGAGTATGG+GGG | + | chr3_4:52419902-52419921 | Msa0506220:CDS | 65.0% |
!! | GCTCGGGTGGTGGAATGTCG+AGG | + | chr3_4:52420102-52420121 | Msa0506220:CDS | 65.0% |
!! | CGGGTGGTGGAATGTCGAGG+GGG | + | chr3_4:52420105-52420124 | Msa0506220:CDS | 65.0% |
!! | CTCTAGGACTACGCGTGCCG+CGG | - | chr3_4:52421971-52421990 | None:intergenic | 65.0% |
GTCTCAAGGGCTCAGGGCTC+AGG | + | chr3_4:52425039-52425058 | Msa0506220:intron | 65.0% | |
! | CGGCGCCGGAGAGTGGAAGT+AGG | - | chr3_4:52419476-52419495 | None:intergenic | 70.0% |
! | CGTGAATCGGCGCCGGAGAG+TGG | - | chr3_4:52419483-52419502 | None:intergenic | 70.0% |
TGGAGGGGAAGGGAGAGGCG+GGG | + | chr3_4:52419741-52419760 | Msa0506220:CDS | 70.0% | |
GAAGGGAGAGGCGGGGGAGT+GGG | + | chr3_4:52419748-52419767 | Msa0506220:CDS | 70.0% | |
CCGCGGTGTCCGACACGTGT+CGG | - | chr3_4:52421954-52421973 | None:intergenic | 70.0% | |
CCGACACGTGTCGGACACCG+CGG | + | chr3_4:52421951-52421970 | Msa0506220:intron | 70.0% | |
CGCGGCACGCGTAGTCCTAG+AGG | + | chr3_4:52421969-52421988 | Msa0506220:intron | 70.0% | |
GGAGGGGAAGGGAGAGGCGG+GGG | + | chr3_4:52419742-52419761 | Msa0506220:CDS | 75.0% | |
GGAAGGGAGAGGCGGGGGAG+TGG | + | chr3_4:52419747-52419766 | Msa0506220:CDS | 75.0% | |
!! | GCGGGGGAGTGGGCTGGTGT+CGG | + | chr3_4:52419758-52419777 | Msa0506220:CDS | 75.0% |
!! | GGGGAGTGGGCTGGTGTCGG+AGG | + | chr3_4:52419761-52419780 | Msa0506220:CDS | 75.0% |
! | GGAGAGGCGGGGGAGTGGGC+TGG | + | chr3_4:52419752-52419771 | Msa0506220:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 52419330 | 52425925 | 52419330 | ID=Msa0506220;Name=Msa0506220 |
chr3_4 | mRNA | 52419330 | 52425925 | 52419330 | ID=Msa0506220-mRNA-1;Parent=Msa0506220;Name=Msa0506220-mRNA-1;_AED=0.16;_eAED=0.16;_QI=57|0.66|0.71|1|1|1|7|0|680 |
chr3_4 | exon | 52419330 | 52420344 | 52419330 | ID=Msa0506220-mRNA-1:exon:11419;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52420725 | 52420934 | 52420725 | ID=Msa0506220-mRNA-1:exon:11420;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52422251 | 52422744 | 52422251 | ID=Msa0506220-mRNA-1:exon:11421;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52423245 | 52423348 | 52423245 | ID=Msa0506220-mRNA-1:exon:11422;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52423505 | 52423571 | 52423505 | ID=Msa0506220-mRNA-1:exon:11423;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52425623 | 52425703 | 52425623 | ID=Msa0506220-mRNA-1:exon:11424;Parent=Msa0506220-mRNA-1 |
chr3_4 | exon | 52425797 | 52425925 | 52425797 | ID=Msa0506220-mRNA-1:exon:11425;Parent=Msa0506220-mRNA-1 |
chr3_4 | five_prime_UTR | 52419330 | 52419386 | 52419330 | ID=Msa0506220-mRNA-1:five_prime_utr;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52419387 | 52420344 | 52419387 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52420725 | 52420934 | 52420725 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52422251 | 52422744 | 52422251 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52423245 | 52423348 | 52423245 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52423505 | 52423571 | 52423505 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52425623 | 52425703 | 52425623 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
chr3_4 | CDS | 52425797 | 52425925 | 52425797 | ID=Msa0506220-mRNA-1:cds;Parent=Msa0506220-mRNA-1 |
Gene Sequence |
Protein sequence |