AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0442610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442610 MtrunA17_Chr3g0077481 96.429 280 10 0 15 294 261 540 0.0 540
Msa0442610 MtrunA17_Chr2g0276971 39.209 278 137 11 24 294 259 511 8.23e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0442610 AT1G33980.1 40.493 284 110 12 18 294 251 482 1.53e-37 139
Msa0442610 AT1G33980.2 40.493 284 110 12 18 294 253 484 2.06e-37 139

Find 118 sgRNAs with CRISPR-Local

Find 620 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACGAGATGCTTATCATTT+TGG 0.234375 3_3:-12518061 None:intergenic
AACCCACGGAACCCACATTT+AGG 0.254362 3_3:-12517808 None:intergenic
ACATCATCCGCGTCCAATTC+AGG 0.265286 3_3:+12517346 Msa0442610:three_prime_UTR
GGTAAAAGAAAATGCTTATT+CGG 0.273466 3_3:+12516050 Msa0442610:CDS
ATTCTGAAGGGGAATCTAAA+AGG 0.281820 3_3:+12515689 Msa0442610:CDS
AGGCGTCCACCTCGTCCTTT+TGG 0.319628 3_3:+12515613 Msa0442610:CDS
GGAATTTAGCTGTATAGTTT+TGG 0.320400 3_3:+12517685 Msa0442610:three_prime_UTR
GTCATACCTTCAACTGATTC+AGG 0.322351 3_3:-12515898 None:intergenic
TCTGTATGCAGAAACAAGTT+TGG 0.325968 3_3:+12516438 Msa0442610:intron
TTCCACCGGCTTCACGCCTT+TGG 0.335343 3_3:-12515492 None:intergenic
TGAATCATTTAGTAGGTGTT+TGG 0.336565 3_3:+12517725 Msa0442610:three_prime_UTR
CAGGCCTGATCGTGGTGTTT+GGG 0.338312 3_3:+12515795 Msa0442610:CDS
CCATCATCCTTCACTATATA+GGG 0.349986 3_3:-12516288 None:intergenic
ACAGGCCTGATCGTGGTGTT+TGG 0.351241 3_3:+12515794 Msa0442610:CDS
GGCATTGAAGGTTCCGTCTC+TGG 0.374822 3_3:+12514993 Msa0442610:CDS
ACCATCATCCTTCACTATAT+AGG 0.376532 3_3:-12516289 None:intergenic
AGGGGAATCTAAAAGGGATT+TGG 0.379049 3_3:+12515696 Msa0442610:CDS
AGGCTCATGTCGACCTGAAT+TGG 0.394710 3_3:-12517359 None:intergenic
AAAATGCTTATTCGGGAAAC+AGG 0.394937 3_3:+12516058 Msa0442610:CDS
GACATTGTTAACCATGTTGA+TGG 0.397392 3_3:+12517600 Msa0442610:three_prime_UTR
TGGGTTCAGAAATCATCTTC+AGG 0.399182 3_3:+12516458 Msa0442610:CDS
CTGTATGCAGAAACAAGTTT+GGG 0.400640 3_3:+12516439 Msa0442610:intron
ATTGAGCTAGGGATCTGTTT+AGG 0.401238 3_3:+12517323 Msa0442610:three_prime_UTR
TTGCATTCCTTCAATTCTAC+AGG 0.415839 3_3:-12517534 None:intergenic
GACAGAGCCTGTAGAATTGA+AGG 0.416637 3_3:+12517527 Msa0442610:three_prime_UTR
TCAGGCTCTTAAAATATTTG+TGG 0.419901 3_3:+12516476 Msa0442610:exon
CACTTTAGCACACCTTGTGC+GGG 0.421148 3_3:-12506096 None:intergenic
GTAAAAGAAAATGCTTATTC+GGG 0.425492 3_3:+12516051 Msa0442610:CDS
CAAATCTTAACTTCTGAGAA+TGG 0.431636 3_3:+12515589 Msa0442610:CDS
AGGCTCTGTCAGGCAACAAT+TGG 0.431873 3_3:-12517514 None:intergenic
ACCCACGGAACCCACATTTA+GGG 0.445532 3_3:-12517807 None:intergenic
CATTTCTGCTACATTGAGCT+AGG 0.447619 3_3:+12517311 Msa0442610:three_prime_UTR
AAACTTTCAAAGAAAGGTGT+TGG 0.453145 3_3:+12516333 Msa0442610:CDS
ACTATATATGTCAAATGAAC+CGG 0.457668 3_3:-12517858 None:intergenic
CTTTCAGGCCACTGAAGGTA+TGG 0.458031 3_3:+12515411 Msa0442610:intron
TATACAGTGCATGGCATTGA+AGG 0.462061 3_3:+12514981 Msa0442610:intron
CACCCTAAATGTGGGTTCCG+TGG 0.465541 3_3:+12517805 Msa0442610:three_prime_UTR
AACTTTCAAAGAAAGGTGTT+GGG 0.465614 3_3:+12516334 Msa0442610:CDS
ATTACTAGAATGTGAAGAAT+CGG 0.475433 3_3:-12515833 None:intergenic
CTGTTTAACCATACCTTCAG+TGG 0.475898 3_3:-12515419 None:intergenic
CTAAATGATTCACTTTCCTA+TGG 0.476224 3_3:-12517714 None:intergenic
TCACTTTAGCACACCTTGTG+CGG 0.488960 3_3:-12506097 None:intergenic
GGTGAATTCTCAACTTCTGC+AGG 0.489502 3_3:+12516084 Msa0442610:CDS
TTCTGAAGGGGAATCTAAAA+GGG 0.490928 3_3:+12515690 Msa0442610:CDS
AGGAAAGTGAATCATTTAGT+AGG 0.496563 3_3:+12517718 Msa0442610:three_prime_UTR
ACCCTAAATGTGGGTTCCGT+GGG 0.505363 3_3:+12517806 Msa0442610:three_prime_UTR
CAGAACCAAAGGCGTGAAGC+CGG 0.505752 3_3:+12515487 Msa0442610:CDS
GAAAAGACACGAACCATACA+AGG 0.506281 3_3:-12517630 None:intergenic
TCATATCCTGAATCAGTTGA+AGG 0.510630 3_3:+12515892 Msa0442610:CDS
TCAATTCTACAGGCTCTGTC+AGG 0.514091 3_3:-12517524 None:intergenic
AAGCCGGTGGAAGATTGATC+AGG 0.514442 3_3:+12515503 Msa0442610:CDS
GGTGCCCAAACACCACGATC+AGG 0.517553 3_3:-12515799 None:intergenic
TCGAGTAGGGTTTGTATGAA+AGG 0.517799 3_3:+12517880 Msa0442610:three_prime_UTR
TTGACATATATAGTCGAGTA+GGG 0.517838 3_3:+12517867 Msa0442610:three_prime_UTR
AACCCAGACCTTGAACCAAA+AGG 0.525585 3_3:-12515628 None:intergenic
GAAGGGAAACTTTCAAAGAA+AGG 0.528593 3_3:+12516327 Msa0442610:CDS
ACAGACCTTACAAGTAGCTT+AGG 0.531857 3_3:-12517379 None:intergenic
ATGAGCCTAAGCTACTTGTA+AGG 0.533985 3_3:+12517374 Msa0442610:three_prime_UTR
CCCTATATAGTGAAGGATGA+TGG 0.537091 3_3:+12516288 Msa0442610:CDS
ATAGGATGTTAACATGTCTT+CGG 0.537587 3_3:+12517967 Msa0442610:three_prime_UTR
TGATGGGCTAGACCCTTGTA+TGG 0.539425 3_3:+12517617 Msa0442610:three_prime_UTR
TCAACTGATTCAGGATATGA+TGG 0.541254 3_3:-12515889 None:intergenic
ATTTCTGCTACATTGAGCTA+GGG 0.552120 3_3:+12517312 Msa0442610:three_prime_UTR
AGTAGTCCCTCTGTTGAGAA+TGG 0.556313 3_3:+12516114 Msa0442610:CDS
CATGTCTCTAGTCATGATGC+TGG 0.556919 3_3:+12515658 Msa0442610:CDS
TATTACAAAATGATGAGGAA+TGG 0.558397 3_3:+12518029 Msa0442610:three_prime_UTR
TTCGGTAAATAGTCATGTCA+AGG 0.559772 3_3:-12517569 None:intergenic
TTTAGCTTCACCCTAAATGT+GGG 0.559799 3_3:+12517797 Msa0442610:three_prime_UTR
CCTTCTGAAAGGAAAACAGC+GGG 0.562206 3_3:+12515055 Msa0442610:CDS
TCTTAACTTCTGAGAATGGA+AGG 0.562840 3_3:+12515593 Msa0442610:CDS
GTGCAGTCAGTTCGAGTGAA+GGG 0.563790 3_3:+12516310 Msa0442610:CDS
AATGATGAGGAATGGCATGC+GGG 0.566682 3_3:+12518037 Msa0442610:three_prime_UTR
GGAACAAACACAATTTAGTC+CGG 0.566913 3_3:+12517839 Msa0442610:three_prime_UTR
TTTGACATATATAGTCGAGT+AGG 0.572107 3_3:+12517866 Msa0442610:three_prime_UTR
TGGAACTTTCAGGCCACTGA+AGG 0.573276 3_3:+12515406 Msa0442610:intron
GCTGGGCATGCTAATTCTGA+AGG 0.580615 3_3:+12515676 Msa0442610:CDS
GCTCCTGATCAATCTTCCAC+CGG 0.582381 3_3:-12515506 None:intergenic
ACATTGTTAACCATGTTGAT+GGG 0.583458 3_3:+12517601 Msa0442610:three_prime_UTR
TGAGCTCTCATCATCCTCAC+TGG 0.585263 3_3:+12515855 Msa0442610:CDS
CACCAACCATTCTCAACAGA+GGG 0.588071 3_3:-12516120 None:intergenic
TTCGGTACACATCCCAGATG+AGG 0.588555 3_3:+12517985 Msa0442610:three_prime_UTR
GGTGCAGTCAGTTCGAGTGA+AGG 0.593819 3_3:+12516309 Msa0442610:CDS
CTGGGCATGCTAATTCTGAA+GGG 0.594470 3_3:+12515677 Msa0442610:CDS
ATGTCTCTAGTCATGATGCT+GGG 0.599416 3_3:+12515659 Msa0442610:CDS
ATCAACATGGTTAACAATGT+CGG 0.601385 3_3:-12517598 None:intergenic
GAATTCTCAACTTCTGCAGG+TGG 0.610336 3_3:+12516087 Msa0442610:CDS
TTTCCTGAGTCAGAAGTCAG+TGG 0.613047 3_3:-12515020 None:intergenic
CAAATTATTACAAAATGATG+AGG 0.614116 3_3:+12518024 Msa0442610:three_prime_UTR
CTACTTCAAAACAGAACCAA+AGG 0.614831 3_3:+12515476 Msa0442610:CDS
AGAGTGAATCACCCCGCACA+AGG 0.616073 3_3:+12506084 Msa0442610:CDS
ATACCACTGACTTCTGACTC+AGG 0.622853 3_3:+12515017 Msa0442610:CDS
TGTTCCGCGTTTAGAACCCA+CGG 0.624670 3_3:-12517822 None:intergenic
AACCAAAGGCGTGAAGCCGG+TGG 0.625599 3_3:+12515490 Msa0442610:CDS
GACGTACTAGAAACAAGGAC+AGG 0.626561 3_3:+12515776 Msa0442610:CDS
TCGGTACACATCCCAGATGA+GGG 0.633083 3_3:+12517986 Msa0442610:three_prime_UTR
GCAAACAGATTATGGACACT+CGG 0.636447 3_3:+12517254 Msa0442610:intron
TGGGGCTCCCTATATAGTGA+AGG 0.637270 3_3:+12516281 Msa0442610:CDS
AACAAGGACAGGCCTGATCG+TGG 0.639778 3_3:+12515787 Msa0442610:CDS
AGTCAGTGGTATTCCAGAGA+CGG 0.644574 3_3:-12515006 None:intergenic
TGGGCATGCTAATTCTGAAG+GGG 0.646561 3_3:+12515678 Msa0442610:CDS
AAATGATGAGGAATGGCATG+CGG 0.647831 3_3:+12518036 Msa0442610:three_prime_UTR
ACTTTAGCACACCTTGTGCG+GGG 0.648538 3_3:-12506095 None:intergenic
GACCTTGAACCAAAAGGACG+AGG 0.650876 3_3:-12515622 None:intergenic
TGTTGGGAATAGTACTCATG+AGG 0.651580 3_3:+12516350 Msa0442610:CDS
GCTTATTCGGGAAACAGGAG+TGG 0.655321 3_3:+12516063 Msa0442610:CDS
AGAAAGACGTACTAGAAACA+AGG 0.658009 3_3:+12515771 Msa0442610:CDS
ATGTCGACCTGAATTGGACG+CGG 0.663849 3_3:-12517353 None:intergenic
TCCTTCTGAAAGGAAAACAG+CGG 0.668874 3_3:+12515054 Msa0442610:CDS
CTTGAACCAAAAGGACGAGG+TGG 0.668946 3_3:-12515619 None:intergenic
GAAGAATCGGAACGGCGAAG+AGG 0.673314 3_3:-12515820 None:intergenic
ACACCAACCATTCTCAACAG+AGG 0.678931 3_3:-12516121 None:intergenic
AAGGGTCTAGCCCATCAACA+TGG 0.690955 3_3:-12517611 None:intergenic
TAGAATGTGAAGAATCGGAA+CGG 0.692170 3_3:-12515828 None:intergenic
GCAGTAGATGTAGACTGACT+CGG 0.696602 3_3:-12515553 None:intergenic
AAAAGACACGAACCATACAA+GGG 0.708140 3_3:-12517629 None:intergenic
GGTAAATAGTCATGTCAAGG+AGG 0.708304 3_3:-12517566 None:intergenic
GGTTCCGTGGGTTCTAAACG+CGG 0.714563 3_3:+12517818 Msa0442610:three_prime_UTR
TGGTGCAGACTGTGCCAGTG+AGG 0.729152 3_3:-12515869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGACATTTTTTTATTTTTTT+TGG - chr3_3:12506606-12506625 None:intergenic 10.0%
!! AATCAAACAATAAAAAAAAT+AGG - chr3_3:12507197-12507216 None:intergenic 10.0%
!!! TTATAATTTTATAATTGCAA+TGG + chr3_3:12508331-12508350 Msa0442610:intron 10.0%
!!! GTTTTTCTTAAAAAAAAAAT+TGG + chr3_3:12508634-12508653 Msa0442610:intron 10.0%
!!! AATGATTTTTTTAAAAAACT+CGG + chr3_3:12508745-12508764 Msa0442610:intron 10.0%
!!! GATTTAATTCAAATTATTTT+TGG + chr3_3:12510200-12510219 Msa0442610:intron 10.0%
!!! ATTTGTTTTGATAAAAAAAA+CGG + chr3_3:12510226-12510245 Msa0442610:intron 10.0%
!!! AGAAAATAATTGATATTTTA+AGG + chr3_3:12510655-12510674 Msa0442610:intron 10.0%
!! TATTCTTAAGATAAAATTTA+TGG + chr3_3:12510693-12510712 Msa0442610:intron 10.0%
!!! TGATTTTATAGTAATTTTAT+CGG + chr3_3:12511606-12511625 Msa0442610:intron 10.0%
!!! TTTAATTGAGTTTAATTTTT+TGG - chr3_3:12511671-12511690 None:intergenic 10.0%
!!! ACATAATATTTTAAAGTTTT+GGG - chr3_3:12512006-12512025 None:intergenic 10.0%
!!! TACATAATATTTTAAAGTTT+TGG - chr3_3:12512007-12512026 None:intergenic 10.0%
!!! CTTTAAAATATTATGTATAT+TGG + chr3_3:12512010-12512029 Msa0442610:intron 10.0%
!! CATAATGAAAAATTTAATAA+GGG - chr3_3:12515377-12515396 None:intergenic 10.0%
!! TCATAATGAAAAATTTAATA+AGG - chr3_3:12515378-12515397 None:intergenic 10.0%
!!! AAAAGAAAATTAGTTTTAAT+TGG + chr3_3:12516832-12516851 Msa0442610:intron 10.0%
!!! AAAGAAAATTAGTTTTAATT+GGG + chr3_3:12516833-12516852 Msa0442610:intron 10.0%
!!! GTACTTTTCAAAAAAAATTA+AGG - chr3_3:12506914-12506933 None:intergenic 15.0%
!! AAATAAAAGAAAAGATAATG+TGG - chr3_3:12507166-12507185 None:intergenic 15.0%
!!! TTTTATGTAGTATTTGTTTT+TGG + chr3_3:12507407-12507426 Msa0442610:intron 15.0%
!! GTTATCTAAAAAAAAAATGA+AGG - chr3_3:12507627-12507646 None:intergenic 15.0%
!!! ATTTTTTTTTTAGATAACTG+AGG + chr3_3:12507629-12507648 Msa0442610:intron 15.0%
!!! AATATTGATTAAGTTAGTTA+AGG - chr3_3:12507758-12507777 None:intergenic 15.0%
!! AACTTAATCAATATTATCAT+TGG + chr3_3:12507763-12507782 Msa0442610:intron 15.0%
!!! ATTTTTTTTGGGTAATATAT+GGG - chr3_3:12508462-12508481 None:intergenic 15.0%
!!! AATTTTTTTTGGGTAATATA+TGG - chr3_3:12508463-12508482 None:intergenic 15.0%
!!! TTTTCTTCACAATTTTTTTT+GGG - chr3_3:12508473-12508492 None:intergenic 15.0%
!!! TTTTTCTTCACAATTTTTTT+TGG - chr3_3:12508474-12508493 None:intergenic 15.0%
!! AAACAAAAATTTACCAAAAA+TGG + chr3_3:12508550-12508569 Msa0442610:intron 15.0%
!! TTAAATCTCTAGATTAAATT+AGG + chr3_3:12508712-12508731 Msa0442610:intron 15.0%
!! TTTATAAGAAACTAAGAATA+AGG + chr3_3:12508994-12509013 Msa0442610:intron 15.0%
!!! ATTTCTTTATTTGTACTATA+AGG + chr3_3:12509157-12509176 Msa0442610:intron 15.0%
!!! TTAATTACCTTATTTATAAG+CGG + chr3_3:12509408-12509427 Msa0442610:intron 15.0%
!! TGATAAATAGAAATAAACAT+GGG + chr3_3:12510125-12510144 Msa0442610:intron 15.0%
!!! ATATAATCTGACATATTTTT+AGG - chr3_3:12510254-12510273 None:intergenic 15.0%
!!! AAAGATTTTAGATAAAAATG+TGG - chr3_3:12511213-12511232 None:intergenic 15.0%
!!! AGTTAAAATTTTACATTAGA+TGG - chr3_3:12511288-12511307 None:intergenic 15.0%
!! TAAAGATAATAGAAATGATA+AGG + chr3_3:12512292-12512311 Msa0442610:intron 15.0%
!! AAAGATAATAGAAATGATAA+GGG + chr3_3:12512293-12512312 Msa0442610:intron 15.0%
!!! TTTTAATTGATTCTCTTTTT+GGG - chr3_3:12512426-12512445 None:intergenic 15.0%
!!! TTTTTAATTGATTCTCTTTT+TGG - chr3_3:12512427-12512446 None:intergenic 15.0%
!!! TGAACTATTTTTTTAGTTTT+TGG - chr3_3:12512652-12512671 None:intergenic 15.0%
!!! TTTTTATGAGTCTAATATTT+TGG - chr3_3:12513193-12513212 None:intergenic 15.0%
!! AATGAAATTAAAAACATTGT+CGG - chr3_3:12513732-12513751 None:intergenic 15.0%
!!! AAGAACATTATTTTCTTATA+AGG - chr3_3:12515191-12515210 None:intergenic 15.0%
!!! AAACTAATTTTCTTTTCTTT+TGG - chr3_3:12516828-12516847 None:intergenic 15.0%
!!! TACATTTTGTTATTACAAAT+AGG + chr3_3:12517949-12517968 Msa0442610:three_prime_UTR 15.0%
!!! TTCTTTGTATTTCTTTTAGA+TGG - chr3_3:12506173-12506192 None:intergenic 20.0%
!! ATTATTATCTTAAGGTCATT+TGG - chr3_3:12506391-12506410 None:intergenic 20.0%
!! ATGTACTCATTATTATCTTA+AGG - chr3_3:12506399-12506418 None:intergenic 20.0%
!! TTATGTTCACTTTATTCATT+TGG - chr3_3:12506435-12506454 None:intergenic 20.0%
!! AATGAATAAAGTGAACATAA+TGG + chr3_3:12506435-12506454 Msa0442610:intron 20.0%
!!! TTTTTTTTGAAAAGTACACA+TGG + chr3_3:12506917-12506936 Msa0442610:intron 20.0%
!! ATTTAATCATCCAATCAAAA+TGG + chr3_3:12506970-12506989 Msa0442610:intron 20.0%
!!! TTTTTATTAGCCAATCAAAA+TGG + chr3_3:12507009-12507028 Msa0442610:intron 20.0%
!! TGTGATTTCTTATTCAAAAT+TGG + chr3_3:12507273-12507292 Msa0442610:intron 20.0%
!! ATTGGATTAAAATCAATCAA+TGG + chr3_3:12507781-12507800 Msa0442610:intron 20.0%
!!! TCAATATATAAAAATGGGTT+AGG - chr3_3:12507854-12507873 None:intergenic 20.0%
!! CGCAATCAATATATAAAAAT+GGG - chr3_3:12507859-12507878 None:intergenic 20.0%
!!! CCATTTTTATATATTGATTG+CGG + chr3_3:12507857-12507876 Msa0442610:intron 20.0%
!!! CATTTTTATATATTGATTGC+GGG + chr3_3:12507858-12507877 Msa0442610:intron 20.0%
!!! ACATTAGTTTTTTTGAAGTA+GGG - chr3_3:12507916-12507935 None:intergenic 20.0%
!!! TTTTTTAAGGAAAATCACAT+TGG - chr3_3:12508133-12508152 None:intergenic 20.0%
!!! AATCACATTAGCTTTTTTTA+AGG - chr3_3:12508146-12508165 None:intergenic 20.0%
!! TAAAATTTACACCGTAAAAA+AGG - chr3_3:12508314-12508333 None:intergenic 20.0%
!! AAATGAAAAAAGATTTGCAT+AGG - chr3_3:12508359-12508378 None:intergenic 20.0%
!!! GTATTTGTTTTTTTAGGAAA+TGG - chr3_3:12508440-12508459 None:intergenic 20.0%
!!! ATATGGGTATTTGTTTTTTT+AGG - chr3_3:12508446-12508465 None:intergenic 20.0%
!! TAAACACATAAATGAAATCT+TGG - chr3_3:12509137-12509156 None:intergenic 20.0%
!!! AATGTGTACTTTTGATTTTT+AGG - chr3_3:12509209-12509228 None:intergenic 20.0%
!! ACTTATTAATCATGTTTCAA+AGG + chr3_3:12509481-12509500 Msa0442610:intron 20.0%
!! AAACAATGATGATAATTTGA+TGG - chr3_3:12509510-12509529 None:intergenic 20.0%
!!! ATTATCCGCTATATTTTAAA+AGG - chr3_3:12510041-12510060 None:intergenic 20.0%
!!! CATGTTTATTTCTATTTATC+AGG - chr3_3:12510126-12510145 None:intergenic 20.0%
!! CTGATAAATAGAAATAAACA+TGG + chr3_3:12510124-12510143 Msa0442610:intron 20.0%
!!! CAATTTTATAAGCAATTCAA+AGG - chr3_3:12510181-12510200 None:intergenic 20.0%
!!! TTTAACAAAGGCTTTTTTAA+TGG - chr3_3:12510516-12510535 None:intergenic 20.0%
!! TAAAAAAGCCTTTGTTAAAT+AGG + chr3_3:12510517-12510536 Msa0442610:intron 20.0%
!! AAAGATATCCTATTTAACAA+AGG - chr3_3:12510528-12510547 None:intergenic 20.0%
!! ACCTAATCTGATAAAAAATT+AGG + chr3_3:12510750-12510769 Msa0442610:intron 20.0%
!! CCTAATCTGATAAAAAATTA+GGG + chr3_3:12510751-12510770 Msa0442610:intron 20.0%
!!! ATTGATGTAATTTAATGGAT+TGG + chr3_3:12511432-12511451 Msa0442610:intron 20.0%
!!! TTGATGTAATTTAATGGATT+GGG + chr3_3:12511433-12511452 Msa0442610:intron 20.0%
!!! TAATTTTATCGGTTTATTGA+AGG + chr3_3:12511617-12511636 Msa0442610:intron 20.0%
!!! TTGAACATTTTTAAATGTTG+TGG - chr3_3:12511700-12511719 None:intergenic 20.0%
!!! ATTTTAAATACCTTCACTTT+TGG - chr3_3:12512544-12512563 None:intergenic 20.0%
!! CAATATATATAATGTCTTTC+AGG - chr3_3:12512776-12512795 None:intergenic 20.0%
!! CTGAAAGACATTATATATAT+TGG + chr3_3:12512774-12512793 Msa0442610:intron 20.0%
!! CATAACATGTTAAAAAATGT+GGG + chr3_3:12512940-12512959 Msa0442610:intron 20.0%
!!! GTACTTTTATACATTATTGA+AGG + chr3_3:12513139-12513158 Msa0442610:intron 20.0%
!! AAATAAAATTATCACAACGT+TGG + chr3_3:12513416-12513435 Msa0442610:intron 20.0%
!! ACATTAAAATCGAGTTAAAA+AGG + chr3_3:12513678-12513697 Msa0442610:intron 20.0%
!! GTGAAAATGAAAATTTAATG+TGG - chr3_3:12513755-12513774 None:intergenic 20.0%
!! CATATAATGTTGAACTTTAA+CGG + chr3_3:12514595-12514614 Msa0442610:intron 20.0%
!!! TTGCAATCAATGTATTTTTT+TGG + chr3_3:12514749-12514768 Msa0442610:intron 20.0%
!! ATCTATAAAAGTAAGTGAAA+TGG - chr3_3:12515148-12515167 None:intergenic 20.0%
!!! TTTTCATTATGAACTTTCTA+TGG + chr3_3:12515386-12515405 Msa0442610:intron 20.0%
!! ACAATATAAACAACTATAGA+AGG + chr3_3:12516178-12516197 Msa0442610:intron 20.0%
!! TCATAAGTCTAAATAAACTT+TGG + chr3_3:12517008-12517027 Msa0442610:intron 20.0%
!! AACAATTACTTGAAAAATTG+AGG + chr3_3:12517284-12517303 Msa0442610:three_prime_UTR 20.0%
!! ACAATTACTTGAAAAATTGA+GGG + chr3_3:12517285-12517304 Msa0442610:three_prime_UTR 20.0%
!!! TTTTCGAATATTTTGGTTTT+GGG + chr3_3:12517648-12517667 Msa0442610:three_prime_UTR 20.0%
!! CAAATTATTACAAAATGATG+AGG + chr3_3:12518024-12518043 Msa0442610:three_prime_UTR 20.0%
!! TTTGTATTTCTTTTAGATGG+TGG - chr3_3:12506170-12506189 None:intergenic 25.0%
! ACTTTATCAACAATACTAGA+AGG + chr3_3:12506299-12506318 Msa0442610:intron 25.0%
! AGATAATAATGAGTACATTG+TGG + chr3_3:12506401-12506420 Msa0442610:intron 25.0%
!!! TCTTCTTTTTTTTTGGTAGT+GGG - chr3_3:12506579-12506598 None:intergenic 25.0%
!!! TTCTTCTTTTTTTTTGGTAG+TGG - chr3_3:12506580-12506599 None:intergenic 25.0%
!!! TGGTAGTTCTTCTTTTTTTT+TGG - chr3_3:12506586-12506605 None:intergenic 25.0%
!!! AGTTAGCCAATTCTTTTTTA+AGG + chr3_3:12506793-12506812 Msa0442610:intron 25.0%
!!! GTTAGCCAATTCTTTTTTAA+GGG + chr3_3:12506794-12506813 Msa0442610:intron 25.0%
!!! ATGTCATGATCAATTTTGAT+TGG - chr3_3:12507061-12507080 None:intergenic 25.0%
!!! TTTTTTTTTATGAGAGGAAG+AGG - chr3_3:12507132-12507151 None:intergenic 25.0%
!!! AGTGGTTTTTTTTTTATGAG+AGG - chr3_3:12507138-12507157 None:intergenic 25.0%
!! ATATGTTCTTTGTCTTTTAC+TGG + chr3_3:12507301-12507320 Msa0442610:intron 25.0%
!!! CTTTTACTGGATTCTTATTT+TGG + chr3_3:12507314-12507333 Msa0442610:intron 25.0%
!! ATTTCTTCTTTTCTCTTGAT+TGG - chr3_3:12507349-12507368 None:intergenic 25.0%
! TTGTTATAAAGCTATGATCA+AGG + chr3_3:12507469-12507488 Msa0442610:intron 25.0%
! GTATATTGATATACGAAACA+TGG - chr3_3:12507554-12507573 None:intergenic 25.0%
! GTATATCAATATACCTATGT+TGG + chr3_3:12507560-12507579 Msa0442610:intron 25.0%
! ATCAATCAATGGCTAAAATT+TGG + chr3_3:12507792-12507811 Msa0442610:intron 25.0%
! CCGCAATCAATATATAAAAA+TGG - chr3_3:12507860-12507879 None:intergenic 25.0%
!!! CACATTAGTTTTTTTGAAGT+AGG - chr3_3:12507917-12507936 None:intergenic 25.0%
!!! AATGTGATTTTTTGTTTGCA+AGG + chr3_3:12507931-12507950 Msa0442610:intron 25.0%
!!! AAAGCAATTGTCCTTTTTTA+CGG + chr3_3:12508300-12508319 Msa0442610:intron 25.0%
!!! TTTTTTTAGCAGAGTAAACT+TGG - chr3_3:12508533-12508552 None:intergenic 25.0%
!!! CATGTGTAAACTTTTTTATG+AGG - chr3_3:12509336-12509355 None:intergenic 25.0%
! GATGATTTAGTTACTCTAAT+TGG - chr3_3:12509584-12509603 None:intergenic 25.0%
! TAGAGTAACTAAATCATCAT+AGG + chr3_3:12509586-12509605 Msa0442610:intron 25.0%
! GTTTGAGAAACGAAAAAAAA+AGG - chr3_3:12509765-12509784 None:intergenic 25.0%
! ATATCATTGATGTCATTACA+AGG + chr3_3:12509792-12509811 Msa0442610:intron 25.0%
!! TAAAACCTTTTCAACTCAAA+TGG + chr3_3:12509913-12509932 Msa0442610:intron 25.0%
!!! AGACACCTTTTAAAATATAG+CGG + chr3_3:12510033-12510052 Msa0442610:intron 25.0%
!!! AATTTTCAAAGTATCATCAG+AGG - chr3_3:12510096-12510115 None:intergenic 25.0%
!! GAGATTTTATTGATCATCAT+AGG - chr3_3:12510587-12510606 None:intergenic 25.0%
!!! CCCTAATTTTTTATCAGATT+AGG - chr3_3:12510754-12510773 None:intergenic 25.0%
! CTAAGTTGTATAATCACATT+AGG + chr3_3:12510809-12510828 Msa0442610:intron 25.0%
! TCCTTAAGACATTAGATATA+TGG + chr3_3:12510874-12510893 Msa0442610:intron 25.0%
! TCCATATATCTAATGTCTTA+AGG - chr3_3:12510878-12510897 None:intergenic 25.0%
! CTCTATTTAGTGTGATTTAA+TGG + chr3_3:12510978-12510997 Msa0442610:intron 25.0%
! GAGTAAAGAGAAAGTAAATT+AGG + chr3_3:12511028-12511047 Msa0442610:intron 25.0%
!!! ATGATGTATTCTTTTGATTG+TGG - chr3_3:12511109-12511128 None:intergenic 25.0%
! TGTAGTATGTCACATAATTA+TGG - chr3_3:12511366-12511385 None:intergenic 25.0%
!!! TGATGTAATTTAATGGATTG+GGG + chr3_3:12511434-12511453 Msa0442610:intron 25.0%
!!! CTCTATTTGTTATAACCTTA+TGG - chr3_3:12511586-12511605 None:intergenic 25.0%
! TCTATTATTTCAACTTCCTT+CGG - chr3_3:12511796-12511815 None:intergenic 25.0%
!! TCAAAATGTTTAGAGTTTCA+AGG + chr3_3:12511920-12511939 Msa0442610:intron 25.0%
!! CGAGTTACTGATAATTTTAT+GGG + chr3_3:12512361-12512380 Msa0442610:intron 25.0%
!!! AGTGAAGGTATTTAAAATAG+TGG + chr3_3:12512546-12512565 Msa0442610:intron 25.0%
!! GTATTTAAAATAGTGGAGAT+TGG + chr3_3:12512553-12512572 Msa0442610:intron 25.0%
! AAATAGTTCATCATAGTGTT+TGG + chr3_3:12512662-12512681 Msa0442610:intron 25.0%
!!! ATATAATGTCTTTCAGGTTT+TGG - chr3_3:12512770-12512789 None:intergenic 25.0%
! GCATAACATGTTAAAAAATG+TGG + chr3_3:12512939-12512958 Msa0442610:intron 25.0%
!!! TCTTTTTTCTCATGAAAGAA+AGG - chr3_3:12512999-12513018 None:intergenic 25.0%
! AAAAAGAAAGAAGACGAAAA+AGG + chr3_3:12513030-12513049 Msa0442610:intron 25.0%
! AATGAAAAGAGAAACAAGTA+AGG + chr3_3:12513070-12513089 Msa0442610:intron 25.0%
! TAAAGTATATAACGAGTTAC+TGG + chr3_3:12513117-12513136 Msa0442610:intron 25.0%
!! TTAGACATTTTAAATTGTCG+TGG - chr3_3:12513221-12513240 None:intergenic 25.0%
! GAATGAATCAAATATAACAG+AGG + chr3_3:12513319-12513338 Msa0442610:intron 25.0%
!!! TTAAGTTGGTTTATGTTGTT+TGG - chr3_3:12513777-12513796 None:intergenic 25.0%
! CATAAACCAACTTAAAAATG+TGG + chr3_3:12513782-12513801 Msa0442610:intron 25.0%
!!! TTTTGTCCACATTTTTAAGT+TGG - chr3_3:12513791-12513810 None:intergenic 25.0%
!! GTTTTTATTATGTTGCAGTT+TGG + chr3_3:12514003-12514022 Msa0442610:intron 25.0%
! CAGATAATTAAACCTACTTT+GGG - chr3_3:12515086-12515105 None:intergenic 25.0%
! ACAGATAATTAAACCTACTT+TGG - chr3_3:12515087-12515106 None:intergenic 25.0%
!! TTTGTAAGAAGAGATTTTCA+TGG + chr3_3:12515727-12515746 Msa0442610:CDS 25.0%
! ATTACTAGAATGTGAAGAAT+CGG - chr3_3:12515836-12515855 None:intergenic 25.0%
!!! CTTTGTTTTGAAATTTCAAG+TGG - chr3_3:12515977-12515996 None:intergenic 25.0%
! AGTGATTGAAATCTATTGTA+TGG + chr3_3:12516000-12516019 Msa0442610:intron 25.0%
!!! AACTATAGAAGGTATTTATC+TGG + chr3_3:12516189-12516208 Msa0442610:intron 25.0%
!!! ACTATAGAAGGTATTTATCT+GGG + chr3_3:12516190-12516209 Msa0442610:intron 25.0%
!!! ATCGATTTTTTTATCTCTGT+AGG + chr3_3:12516234-12516253 Msa0442610:intron 25.0%
!!! ATACAGAAAAGCATTTTACA+GGG - chr3_3:12516425-12516444 None:intergenic 25.0%
! AAAACATTCTGTAAAACTTG+TGG + chr3_3:12516617-12516636 Msa0442610:intron 25.0%
!!! ATGATTGTTTTAGAAGAGTT+AGG - chr3_3:12516751-12516770 None:intergenic 25.0%
! AAAACAATCATGTGAATCTT+TGG + chr3_3:12516760-12516779 Msa0442610:intron 25.0%
!!! TTTTCTTTTGGTTTTCAACA+GGG - chr3_3:12516816-12516835 None:intergenic 25.0%
! TCATGTGAATTCATATTTCA+AGG - chr3_3:12516863-12516882 None:intergenic 25.0%
! TGTATATTTAGTTACACAGA+GGG - chr3_3:12516904-12516923 None:intergenic 25.0%
! ATGTATATTTAGTTACACAG+AGG - chr3_3:12516905-12516924 None:intergenic 25.0%
!!! AGTGAGTTTTAAGATGTTAA+AGG - chr3_3:12517108-12517127 None:intergenic 25.0%
! CAATTACTTGAAAAATTGAG+GGG + chr3_3:12517286-12517305 Msa0442610:three_prime_UTR 25.0%
! GACTTGTAATCAATTTCTAA+TGG + chr3_3:12517472-12517491 Msa0442610:intron 25.0%
!!! CTTTTCGAATATTTTGGTTT+TGG + chr3_3:12517647-12517666 Msa0442610:three_prime_UTR 25.0%
! ACTATATATGTCAAATGAAC+CGG - chr3_3:12517861-12517880 None:intergenic 25.0%
! TATTACAAAATGATGAGGAA+TGG + chr3_3:12518029-12518048 Msa0442610:three_prime_UTR 25.0%
TTATCTTAAGGTCATTTGGT+TGG - chr3_3:12506387-12506406 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr3_3:12506507-12506526 Msa0442610:intron 30.0%
TCACTCCCTTAAAAAAGAAT+TGG - chr3_3:12506802-12506821 None:intergenic 30.0%
AAAGATAATGTGGTTGAAAG+TGG - chr3_3:12507156-12507175 None:intergenic 30.0%
!!! TGCTACTTGCTTAGTTTTTT+AGG - chr3_3:12507595-12507614 None:intergenic 30.0%
! TTTTTAGATAACTGAGGATG+TGG + chr3_3:12507635-12507654 Msa0442610:intron 30.0%
!! GTCAATGTTAGTCTAAGTTT+TGG - chr3_3:12507734-12507753 None:intergenic 30.0%
AAATGACTACAATCTCAAGA+AGG + chr3_3:12507971-12507990 Msa0442610:intron 30.0%
GTAAAAAAGGACAATTGCTT+TGG - chr3_3:12508301-12508320 None:intergenic 30.0%
TTAGGAAATGGATCCTTAAT+CGG - chr3_3:12508428-12508447 None:intergenic 30.0%
! AACGTGATTGTTACCATTTT+TGG - chr3_3:12508566-12508585 None:intergenic 30.0%
AAAATGGTAACAATCACGTT+TGG + chr3_3:12508566-12508585 Msa0442610:intron 30.0%
GAATGGTTACCAGAATTAAT+CGG - chr3_3:12508785-12508804 None:intergenic 30.0%
! AAACAATTTTGTCGAACCAT+TGG - chr3_3:12508936-12508955 None:intergenic 30.0%
TGAGGTGAATTAGACTTTAA+TGG - chr3_3:12509252-12509271 None:intergenic 30.0%
!! GTACTTTCGATTTTTAGATG+AGG - chr3_3:12509270-12509289 None:intergenic 30.0%
TGAGGTGAATTAGACTTTAA+CGG - chr3_3:12509252-12509271 None:intergenic 30.0%
AGTACATGACTACATTTGAT+TGG - chr3_3:12509543-12509562 None:intergenic 30.0%
CTCTAATTGGTAGAAAGTTA+AGG - chr3_3:12509571-12509590 None:intergenic 30.0%
!!! TTGACGTGACATTTTTTCTT+GGG + chr3_3:12509728-12509747 Msa0442610:intron 30.0%
!! GCATTTTAGAAGCAATTCAA+TGG - chr3_3:12509819-12509838 None:intergenic 30.0%
!! TGAATTGCTTCTAAAATGCA+AGG + chr3_3:12509820-12509839 Msa0442610:intron 30.0%
TATCATATACTCGTACTCAT+TGG - chr3_3:12509847-12509866 None:intergenic 30.0%
!! AAACTCCATTTGAGTTGAAA+AGG - chr3_3:12509921-12509940 None:intergenic 30.0%
AGATGTAGTGTCAATTAATG+TGG - chr3_3:12510845-12510864 None:intergenic 30.0%
ATCTACTGATGCATTCAATA+TGG + chr3_3:12510923-12510942 Msa0442610:intron 30.0%
GTAATGATCCAATTCATTGT+AGG - chr3_3:12511154-12511173 None:intergenic 30.0%
ACATACTACATAGTCAAACA+AGG + chr3_3:12511376-12511395 Msa0442610:intron 30.0%
!! GGTGGATTGATGTAATTTAA+TGG + chr3_3:12511427-12511446 Msa0442610:intron 30.0%
TCTCTATTCTCATGAAAGAT+AGG - chr3_3:12511468-12511487 None:intergenic 30.0%
CAGATTAAGAGATATGATAG+TGG + chr3_3:12511531-12511550 Msa0442610:intron 30.0%
! AATTGTGTGTTTTGTCCATA+AGG + chr3_3:12511568-12511587 Msa0442610:intron 30.0%
! TTGAAGGAGTTTGAGATATT+TGG + chr3_3:12511633-12511652 Msa0442610:intron 30.0%
! TGAAGGAGTTTGAGATATTT+GGG + chr3_3:12511634-12511653 Msa0442610:intron 30.0%
CACAACATGGTAAAAAATGT+GGG + chr3_3:12512177-12512196 Msa0442610:intron 30.0%
!! TAAAAAATGTGGGTTGATAG+TGG + chr3_3:12512187-12512206 Msa0442610:intron 30.0%
! GCGAGTTACTGATAATTTTA+TGG + chr3_3:12512360-12512379 Msa0442610:intron 30.0%
! TAATTTTATGGGACAGTTGA+AGG + chr3_3:12512372-12512391 Msa0442610:intron 30.0%
!!! ATACCTTCACTTTTGGTTTT+TGG - chr3_3:12512537-12512556 None:intergenic 30.0%
!!! AGTTTTGAGTGAGCTTATAA+TGG + chr3_3:12512685-12512704 Msa0442610:intron 30.0%
!! TAGTGTCAATCTCATTTTTG+GGG - chr3_3:12512739-12512758 None:intergenic 30.0%
!! GTAGTGTCAATCTCATTTTT+GGG - chr3_3:12512740-12512759 None:intergenic 30.0%
! TGTAGTGTCAATCTCATTTT+TGG - chr3_3:12512741-12512760 None:intergenic 30.0%
!!! GTTATGCCTTTGATCTTTTT+TGG - chr3_3:12512926-12512945 None:intergenic 30.0%
ACATGTTAAAAAATGTGGGT+TGG + chr3_3:12512944-12512963 Msa0442610:intron 30.0%
! TTGAGTTGTATGATCACATT+AGG + chr3_3:12513459-12513478 Msa0442610:intron 30.0%
! AGATAAAAAAGCATGTGGTT+TGG + chr3_3:12513541-12513560 Msa0442610:intron 30.0%
CAAACCAAACCAAACAAATA+CGG + chr3_3:12513599-12513618 Msa0442610:intron 30.0%
CATTGAGTTTCTATGAGTAT+TGG + chr3_3:12513954-12513973 Msa0442610:intron 30.0%
TATTATGTTGCAGTTTGGTT+TGG + chr3_3:12514008-12514027 Msa0442610:intron 30.0%
!! GCATTTGATTTGGATGTATT+CGG - chr3_3:12514101-12514120 None:intergenic 30.0%
GCAAAATACTGCATTTGATT+TGG - chr3_3:12514111-12514130 None:intergenic 30.0%
! AATGCAGTATTTTGCAGTTT+CGG + chr3_3:12514116-12514135 Msa0442610:intron 30.0%
! TCTGTTTGTGGTTTTTGTAT+TGG + chr3_3:12514150-12514169 Msa0442610:intron 30.0%
! TTGTGGTTTTTGTATTGGAT+TGG + chr3_3:12514155-12514174 Msa0442610:intron 30.0%
AATAATGTGGATCAACACAT+CGG + chr3_3:12514469-12514488 Msa0442610:intron 30.0%
! ATACTTAAGCCTTAACGTTT+TGG - chr3_3:12514537-12514556 None:intergenic 30.0%
! AACATTATATGAAAGAGTGC+AGG - chr3_3:12514586-12514605 None:intergenic 30.0%
ATTATCTCCCTTAAGTTTGA+CGG + chr3_3:12514637-12514656 Msa0442610:intron 30.0%
TAGAATTCCGTCAAACTTAA+GGG - chr3_3:12514647-12514666 None:intergenic 30.0%
ATTGATGAATATACAGTGCA+TGG + chr3_3:12514972-12514991 Msa0442610:intron 30.0%
! GTTGGAGTTAATCTTTGTTT+GGG + chr3_3:12515261-12515280 Msa0442610:intron 30.0%
!!! TGTTTTGAAGTAGATGGAAT+GGG - chr3_3:12515469-12515488 None:intergenic 30.0%
! CAAATCTTAACTTCTGAGAA+TGG + chr3_3:12515589-12515608 Msa0442610:CDS 30.0%
! AAGAAGAGATTTTCATGGTT+CGG + chr3_3:12515732-12515751 Msa0442610:CDS 30.0%
!! AAAACTTGTTGTCTAGTCAA+TGG - chr3_3:12515923-12515942 None:intergenic 30.0%
!! TGAAATTTCAAGTGGATTGA+CGG - chr3_3:12515969-12515988 None:intergenic 30.0%
GATTGAAATCTATTGTATGG+TGG + chr3_3:12516003-12516022 Msa0442610:intron 30.0%
!!! GGTGATTTTCAATTTTTAGC+AGG + chr3_3:12516024-12516043 Msa0442610:intron 30.0%
!!! TTTTCAATTTTTAGCAGGAG+AGG + chr3_3:12516029-12516048 Msa0442610:intron 30.0%
!! TGGTGTGTTTTTACTGATTA+TGG + chr3_3:12516138-12516157 Msa0442610:intron 30.0%
! AAAGAATTTTTACTCGTCGT+GGG + chr3_3:12516262-12516281 Msa0442610:CDS 30.0%
! AAACTTTCAAAGAAAGGTGT+TGG + chr3_3:12516333-12516352 Msa0442610:CDS 30.0%
!! AACTTTCAAAGAAAGGTGTT+GGG + chr3_3:12516334-12516353 Msa0442610:CDS 30.0%
!!! CATACAGAAAAGCATTTTAC+AGG - chr3_3:12516426-12516445 None:intergenic 30.0%
TCAGGCTCTTAAAATATTTG+TGG + chr3_3:12516476-12516495 Msa0442610:exon 30.0%
TTCAGAGTTTATTGCATCAA+TGG + chr3_3:12516553-12516572 Msa0442610:intron 30.0%
TCAGAGTTTATTGCATCAAT+GGG + chr3_3:12516554-12516573 Msa0442610:intron 30.0%
!!! CTTTTCTTTTGGTTTTCAAC+AGG - chr3_3:12516817-12516836 None:intergenic 30.0%
!! AGTGAGCTTTAAGATGTTAA+AGG + chr3_3:12517049-12517068 Msa0442610:intron 30.0%
CTTGTATGTAAAACATCCAA+AGG + chr3_3:12517130-12517149 Msa0442610:intron 30.0%
CGAAAGTCTAAATAAACCTT+TGG - chr3_3:12517149-12517168 None:intergenic 30.0%
ACAACTTTGCAAACAGATTA+TGG + chr3_3:12517246-12517265 Msa0442610:intron 30.0%
ATCAACATGGTTAACAATGT+CGG - chr3_3:12517601-12517620 None:intergenic 30.0%
ACATTGTTAACCATGTTGAT+GGG + chr3_3:12517601-12517620 Msa0442610:three_prime_UTR 30.0%
! TCGTGTCTTTTCGAATATTT+TGG + chr3_3:12517641-12517660 Msa0442610:three_prime_UTR 30.0%
!! TTTTGGGAAATGTTTGTGTT+TGG + chr3_3:12517664-12517683 Msa0442610:three_prime_UTR 30.0%
! GGAATTTAGCTGTATAGTTT+TGG + chr3_3:12517685-12517704 Msa0442610:three_prime_UTR 30.0%
CTAAATGATTCACTTTCCTA+TGG - chr3_3:12517717-12517736 None:intergenic 30.0%
AGGAAAGTGAATCATTTAGT+AGG + chr3_3:12517718-12517737 Msa0442610:three_prime_UTR 30.0%
TGAATCATTTAGTAGGTGTT+TGG + chr3_3:12517725-12517744 Msa0442610:three_prime_UTR 30.0%
! TTTAGGGTGAAGCTAAAAAT+TGG - chr3_3:12517794-12517813 None:intergenic 30.0%
TTTGACATATATAGTCGAGT+AGG + chr3_3:12517866-12517885 Msa0442610:three_prime_UTR 30.0%
TTGACATATATAGTCGAGTA+GGG + chr3_3:12517867-12517886 Msa0442610:three_prime_UTR 30.0%
ATAGGATGTTAACATGTCTT+CGG + chr3_3:12517967-12517986 Msa0442610:three_prime_UTR 30.0%
! TGTGGTTTGTAACAGACTTT+GGG - chr3_3:12506130-12506149 None:intergenic 35.0%
AGATACCCACTACTTTGTAT+GGG - chr3_3:12506209-12506228 None:intergenic 35.0%
!!! TTGCGTTTGGTTTTCATGAT+TGG - chr3_3:12506235-12506254 None:intergenic 35.0%
TCATGAAAACCAAACGCAAT+AGG + chr3_3:12506236-12506255 Msa0442610:intron 35.0%
! TGAAGCAAACTTCCTTTTTG+TGG - chr3_3:12506280-12506299 None:intergenic 35.0%
CAACTGTGTCTTCAAAAATG+CGG - chr3_3:12506333-12506352 None:intergenic 35.0%
! TTGTTGTTGGGTAATTTGGA+AGG - chr3_3:12506363-12506382 None:intergenic 35.0%
GTTCACTTTATTCATTTGGC+AGG - chr3_3:12506431-12506450 None:intergenic 35.0%
CATAAAATATGCAAGGTCCA+GGG + chr3_3:12506514-12506533 Msa0442610:intron 35.0%
!!! TTTTTTTTTGGTAGTGGGTG+GGG - chr3_3:12506574-12506593 None:intergenic 35.0%
!!! CTTTTTTTTTGGTAGTGGGT+GGG - chr3_3:12506575-12506594 None:intergenic 35.0%
!!! TCTTTTTTTTTGGTAGTGGG+TGG - chr3_3:12506576-12506595 None:intergenic 35.0%
!! GAGTCATGATCCATTTTGAT+TGG - chr3_3:12506983-12507002 None:intergenic 35.0%
!! GAGTCATGATCCATTTTGAT+TGG - chr3_3:12506983-12507002 None:intergenic 35.0%
!!! CTGGATTCTTATTTTGGACT+TGG + chr3_3:12507320-12507339 Msa0442610:intron 35.0%
AAGGCATGATGTTTGGAAAA+AGG - chr3_3:12507518-12507537 None:intergenic 35.0%
TAGGTACTATGTTCCAACAT+AGG - chr3_3:12507576-12507595 None:intergenic 35.0%
ATCGAAAACACACTAACTCA+TGG + chr3_3:12507666-12507685 Msa0442610:intron 35.0%
AACACACTAACTCATGGATA+TGG + chr3_3:12507672-12507691 Msa0442610:intron 35.0%
ACACACTAACTCATGGATAT+GGG + chr3_3:12507673-12507692 Msa0442610:intron 35.0%
!!! GATTTTTTGTTTGCAAGGCT+AGG + chr3_3:12507936-12507955 Msa0442610:intron 35.0%
TACCAGAATTAATCGGTCAT+GGG - chr3_3:12508778-12508797 None:intergenic 35.0%
TTACCAGAATTAATCGGTCA+TGG - chr3_3:12508779-12508798 None:intergenic 35.0%
CCTCTTATGCAAATTTGAGT+AGG - chr3_3:12508862-12508881 None:intergenic 35.0%
CCTACTCAAATTTGCATAAG+AGG + chr3_3:12508859-12508878 Msa0442610:intron 35.0%
CTTGAAATGTGATCATCTCA+AGG - chr3_3:12508899-12508918 None:intergenic 35.0%
CTTGAGATGATCACATTTCA+AGG + chr3_3:12508897-12508916 Msa0442610:intron 35.0%
CAGCTTTCCGCTTATAAATA+AGG - chr3_3:12509418-12509437 None:intergenic 35.0%
!!! GTTGACGTGACATTTTTTCT+TGG + chr3_3:12509727-12509746 Msa0442610:intron 35.0%
! TCACAGTAGAGTCTAGTTTA+GGG - chr3_3:12510068-12510087 None:intergenic 35.0%
! ATCACAGTAGAGTCTAGTTT+AGG - chr3_3:12510069-12510088 None:intergenic 35.0%
TATGAGTGTATGTCATTGCA+AGG + chr3_3:12510154-12510173 Msa0442610:intron 35.0%
!! GTTCATGTTAGCTCTTTTCT+TGG - chr3_3:12510790-12510809 None:intergenic 35.0%
! ATTTCAACTTCCTTCGGTTT+TGG - chr3_3:12511790-12511809 None:intergenic 35.0%
ATGATCTAACTCATTGTTGG+TGG - chr3_3:12511946-12511965 None:intergenic 35.0%
GTGATGATCTAACTCATTGT+TGG - chr3_3:12511949-12511968 None:intergenic 35.0%
!!! TAAAGTTTTGGGTGATGATG+TGG - chr3_3:12511995-12512014 None:intergenic 35.0%
AGATCTACTTGCATCTATTG+TGG + chr3_3:12512056-12512075 Msa0442610:intron 35.0%
GCACAACATGGTAAAAAATG+TGG + chr3_3:12512176-12512195 Msa0442610:intron 35.0%
!! GTTTTGTCCATTGAAGTGTT+AGG + chr3_3:12512331-12512350 Msa0442610:intron 35.0%
CTCTATTCCTAACACTTCAA+TGG - chr3_3:12512341-12512360 None:intergenic 35.0%
!!! CTTCACTTTTGGTTTTTGGT+GGG - chr3_3:12512533-12512552 None:intergenic 35.0%
!!! TTGATCTTTTTTGGCTCTCT+CGG - chr3_3:12512917-12512936 None:intergenic 35.0%
AGAGAGCCAAAAAAGATCAA+AGG + chr3_3:12512917-12512936 Msa0442610:intron 35.0%
!! TAAAAAATGTGGGTTGGTAG+TGG + chr3_3:12512950-12512969 Msa0442610:intron 35.0%
TTGTATGATCACATTAGGCT+AGG + chr3_3:12513464-12513483 Msa0442610:intron 35.0%
TGTATGATCACATTAGGCTA+GGG + chr3_3:12513465-12513484 Msa0442610:intron 35.0%
!!! CCACATGCTTTTTTATCTTG+CGG - chr3_3:12513539-12513558 None:intergenic 35.0%
!! AAAAAGCATGTGGTTTGGTT+TGG + chr3_3:12513546-12513565 Msa0442610:intron 35.0%
!! TTGTTTGGTTTGGTTTGGTT+CGG - chr3_3:12513596-12513615 None:intergenic 35.0%
!! CGTATTTGTTTGGTTTGGTT+TGG - chr3_3:12513601-12513620 None:intergenic 35.0%
CAAACCGTATTTGTTTGGTT+TGG - chr3_3:12513606-12513625 None:intergenic 35.0%
CAACTCAAACCGTATTTGTT+TGG - chr3_3:12513611-12513630 None:intergenic 35.0%
CAAACAAATACGGTTTGAGT+TGG + chr3_3:12513609-12513628 Msa0442610:intron 35.0%
!! AAATACGGTTTGAGTTGGAT+CGG + chr3_3:12513614-12513633 Msa0442610:intron 35.0%
! CACACAACATATTTTCAGCA+AGG + chr3_3:12513704-12513723 Msa0442610:intron 35.0%
!! GTTTCTATGAGTATTGGTCT+AGG + chr3_3:12513960-12513979 Msa0442610:intron 35.0%
! TTTTACTCAACCACATGGTT+TGG - chr3_3:12514071-12514090 None:intergenic 35.0%
!!! CACTTTTTTACTCAACCACA+TGG - chr3_3:12514076-12514095 None:intergenic 35.0%
! AGTATTTTGCAGTTTCGGTT+TGG + chr3_3:12514121-12514140 Msa0442610:intron 35.0%
!! GTTTTGAACACCCTTACATT+AGG + chr3_3:12514182-12514201 Msa0442610:intron 35.0%
TTGCTCTTAGCCTAATGTAA+GGG - chr3_3:12514195-12514214 None:intergenic 35.0%
ATTGCTCTTAGCCTAATGTA+AGG - chr3_3:12514196-12514215 None:intergenic 35.0%
! ACGGAGAATCTGAAACTTAA+TGG - chr3_3:12514359-12514378 None:intergenic 35.0%
TATCCTGGTTCAATGTTGTA+GGG - chr3_3:12514415-12514434 None:intergenic 35.0%
ATATCCTGGTTCAATGTTGT+AGG - chr3_3:12514416-12514435 None:intergenic 35.0%
! GTGTTGATCCACATTATTGT+TGG - chr3_3:12514467-12514486 None:intergenic 35.0%
CAGTTTCATCCAAAACGTTA+AGG + chr3_3:12514525-12514544 Msa0442610:intron 35.0%
CTAGAATTCCGTCAAACTTA+AGG - chr3_3:12514648-12514667 None:intergenic 35.0%
GCATTTATCATGAACTAGCA+TGG - chr3_3:12514691-12514710 None:intergenic 35.0%
AAAAAGATCCTCCTTCTGAA+AGG + chr3_3:12515044-12515063 Msa0442610:CDS 35.0%
AACTCCAACGTTAGATAGAA+CGG - chr3_3:12515250-12515269 None:intergenic 35.0%
CGTTGGAGTTAATCTTTGTT+TGG + chr3_3:12515260-12515279 Msa0442610:intron 35.0%
GAACTTTCTATGGAACTTTC+AGG + chr3_3:12515396-12515415 Msa0442610:intron 35.0%
!!! CTGTTTTGAAGTAGATGGAA+TGG - chr3_3:12515470-12515489 None:intergenic 35.0%
!!! TGGTTCTGTTTTGAAGTAGA+TGG - chr3_3:12515475-12515494 None:intergenic 35.0%
CTACTTCAAAACAGAACCAA+AGG + chr3_3:12515476-12515495 Msa0442610:CDS 35.0%
! TCTTAACTTCTGAGAATGGA+AGG + chr3_3:12515593-12515612 Msa0442610:CDS 35.0%
! ATTCTGAAGGGGAATCTAAA+AGG + chr3_3:12515689-12515708 Msa0442610:CDS 35.0%
! TTCTGAAGGGGAATCTAAAA+GGG + chr3_3:12515690-12515709 Msa0442610:CDS 35.0%
! AGAAGAGATTTTCATGGTTC+GGG + chr3_3:12515733-12515752 Msa0442610:CDS 35.0%
AGAAAGACGTACTAGAAACA+AGG + chr3_3:12515771-12515790 Msa0442610:CDS 35.0%
TAGAATGTGAAGAATCGGAA+CGG - chr3_3:12515831-12515850 None:intergenic 35.0%
! TCAACTGATTCAGGATATGA+TGG - chr3_3:12515892-12515911 None:intergenic 35.0%
TCATATCCTGAATCAGTTGA+AGG + chr3_3:12515892-12515911 Msa0442610:CDS 35.0%
! CAAAGAATTTTTACTCGTCG+TGG + chr3_3:12516261-12516280 Msa0442610:CDS 35.0%
! AAGAATTTTTACTCGTCGTG+GGG + chr3_3:12516263-12516282 Msa0442610:CDS 35.0%
CCATCATCCTTCACTATATA+GGG - chr3_3:12516291-12516310 None:intergenic 35.0%
ACCATCATCCTTCACTATAT+AGG - chr3_3:12516292-12516311 None:intergenic 35.0%
GAAGGGAAACTTTCAAAGAA+AGG + chr3_3:12516327-12516346 Msa0442610:CDS 35.0%
TCTGTATGCAGAAACAAGTT+TGG + chr3_3:12516438-12516457 Msa0442610:intron 35.0%
CTGTATGCAGAAACAAGTTT+GGG + chr3_3:12516439-12516458 Msa0442610:intron 35.0%
CAGAGTTTATTGCATCAATG+GGG + chr3_3:12516555-12516574 Msa0442610:intron 35.0%
AGAGTTTATTGCATCAATGG+GGG + chr3_3:12516556-12516575 Msa0442610:intron 35.0%
GAGTTAGGAACAATAGATCA+AGG - chr3_3:12516736-12516755 None:intergenic 35.0%
! ACTTTGGATGTTTTACACAC+AGG + chr3_3:12517024-12517043 Msa0442610:intron 35.0%
ATTTCTGCTACATTGAGCTA+GGG + chr3_3:12517312-12517331 Msa0442610:three_prime_UTR 35.0%
TTGCATTCCTTCAATTCTAC+AGG - chr3_3:12517537-12517556 None:intergenic 35.0%
TTCGGTAAATAGTCATGTCA+AGG - chr3_3:12517572-12517591 None:intergenic 35.0%
! TAACAATGTCGGTCTGTTTT+CGG - chr3_3:12517590-12517609 None:intergenic 35.0%
GACATTGTTAACCATGTTGA+TGG + chr3_3:12517600-12517619 Msa0442610:three_prime_UTR 35.0%
AAAAGACACGAACCATACAA+GGG - chr3_3:12517632-12517651 None:intergenic 35.0%
!!! ATAGTTTTGGTACTTGCCAT+AGG + chr3_3:12517698-12517717 Msa0442610:three_prime_UTR 35.0%
!!! TTTTAGCTTCACCCTAAATG+TGG + chr3_3:12517796-12517815 Msa0442610:three_prime_UTR 35.0%
! TTTAGCTTCACCCTAAATGT+GGG + chr3_3:12517797-12517816 Msa0442610:three_prime_UTR 35.0%
GGAACAAACACAATTTAGTC+CGG + chr3_3:12517839-12517858 Msa0442610:three_prime_UTR 35.0%
AAAAAAGAAGTCCCTCATCT+GGG - chr3_3:12518000-12518019 None:intergenic 35.0%
TAAAAAAGAAGTCCCTCATC+TGG - chr3_3:12518001-12518020 None:intergenic 35.0%
! CTGTGGTTTGTAACAGACTT+TGG - chr3_3:12506131-12506150 None:intergenic 40.0%
! TAGATGGTGGCTTTCTTGTT+AGG - chr3_3:12506157-12506176 None:intergenic 40.0%
ATGACACCCATACAAAGTAG+TGG + chr3_3:12506200-12506219 Msa0442610:intron 40.0%
TGACACCCATACAAAGTAGT+GGG + chr3_3:12506201-12506220 Msa0442610:intron 40.0%
GAGATACCCACTACTTTGTA+TGG - chr3_3:12506210-12506229 None:intergenic 40.0%
!!! CGTTTGGTTTTCATGATTGG+TGG - chr3_3:12506232-12506251 None:intergenic 40.0%
AAACCAAACGCAATAGGTAC+CGG + chr3_3:12506242-12506261 Msa0442610:intron 40.0%
ATGCGAAGAAAGCCACAAAA+AGG + chr3_3:12506265-12506284 Msa0442610:intron 40.0%
!! TGGCTTGTTGTTGGGTAATT+TGG - chr3_3:12506367-12506386 None:intergenic 40.0%
!! CATTTGGTTGGCTTGTTGTT+GGG - chr3_3:12506375-12506394 None:intergenic 40.0%
!! TCATTTGGTTGGCTTGTTGT+TGG - chr3_3:12506376-12506395 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+AGG + chr3_3:12506513-12506532 Msa0442610:intron 40.0%
CAAGTTCAAGGCATGATGTT+TGG - chr3_3:12507525-12507544 None:intergenic 40.0%
AACATCATGCCTTGAACTTG+AGG + chr3_3:12507525-12507544 Msa0442610:intron 40.0%
ACATGGATTCCTCAAGTTCA+AGG - chr3_3:12507537-12507556 None:intergenic 40.0%
TAGATAACTGAGGATGTGGA+AGG + chr3_3:12507639-12507658 Msa0442610:intron 40.0%
!! TAGTCTAAGTTTTGGTCTCG+CGG - chr3_3:12507726-12507745 None:intergenic 40.0%
TAACCCTTTACAGCCGATTA+AGG + chr3_3:12508412-12508431 Msa0442610:intron 40.0%
GATCCTTAATCGGCTGTAAA+GGG - chr3_3:12508418-12508437 None:intergenic 40.0%
ACCATTCTCATATCTGCTAG+AGG + chr3_3:12508798-12508817 Msa0442610:intron 40.0%
CCATTCTCATATCTGCTAGA+GGG + chr3_3:12508799-12508818 Msa0442610:intron 40.0%
CATTCTCATATCTGCTAGAG+GGG + chr3_3:12508800-12508819 Msa0442610:intron 40.0%
ATTCTCATATCTGCTAGAGG+GGG + chr3_3:12508801-12508820 Msa0442610:intron 40.0%
AGGCAAATCAAACTCTGTAC+AGG + chr3_3:12508832-12508851 Msa0442610:intron 40.0%
AGGTGTAAAGCATACACCAA+TGG + chr3_3:12508917-12508936 Msa0442610:intron 40.0%
AACTAGACTCTACTGTGATC+CGG + chr3_3:12510070-12510089 Msa0442610:intron 40.0%
! TTCAAAGTATCATCAGAGGC+CGG - chr3_3:12510092-12510111 None:intergenic 40.0%
TCGTCGGAAAAACACAATCA+AGG - chr3_3:12510393-12510412 None:intergenic 40.0%
! TGTTTTTCCGACGATGTTAG+AGG + chr3_3:12510399-12510418 Msa0442610:intron 40.0%
AGAGGTTCTTGGTACAAACT+CGG + chr3_3:12510417-12510436 Msa0442610:intron 40.0%
TCATAGAGTTCAGAGCTATG+AGG + chr3_3:12511125-12511144 Msa0442610:intron 40.0%
TGAGGAAGCCTACAATGAAT+TGG + chr3_3:12511143-12511162 Msa0442610:intron 40.0%
! TGGTGTCAATCTCATTTGTG+AGG - chr3_3:12511193-12511212 None:intergenic 40.0%
CATAGTCAAACAAGGTCACA+CGG + chr3_3:12511384-12511403 Msa0442610:intron 40.0%
TCTGGTGACATAGCCAAATA+AGG + chr3_3:12512143-12512162 Msa0442610:intron 40.0%
! TTTTTACCATGTTGTGCCTC+TGG - chr3_3:12512173-12512192 None:intergenic 40.0%
!! GTTGATAGTGGTTTGATGGA+TGG + chr3_3:12512199-12512218 Msa0442610:intron 40.0%
!!! CCTTCACTTTTGGTTTTTGG+TGG - chr3_3:12512534-12512553 None:intergenic 40.0%
CCACCAAAAACCAAAAGTGA+AGG + chr3_3:12512531-12512550 Msa0442610:intron 40.0%
CTCTCGGTAGATCAGAAATA+CGG - chr3_3:12512901-12512920 None:intergenic 40.0%
!! TGCAGTTTAGTTCGGTTTTG+AGG + chr3_3:12513497-12513516 Msa0442610:intron 40.0%
! CCGCAAGATAAAAAAGCATG+TGG + chr3_3:12513536-12513555 Msa0442610:intron 40.0%
!! TGTTGCAGTTTGGTTTGGTT+TGG + chr3_3:12514013-12514032 Msa0442610:intron 40.0%
!! CAGTTTGGTTTGGTTTGGTT+CGG + chr3_3:12514018-12514037 Msa0442610:intron 40.0%
!! ACATGGTTTGGTTTGGTTTG+CGG - chr3_3:12514059-12514078 None:intergenic 40.0%
!! TTTGCAGTTTCGGTTTGGAT+TGG + chr3_3:12514126-12514145 Msa0442610:intron 40.0%
!! GTTTGGATTGGTTCTGTTTG+TGG + chr3_3:12514138-12514157 Msa0442610:intron 40.0%
AACCTTCATCCAAAGTCTCA+AGG + chr3_3:12514238-12514257 Msa0442610:intron 40.0%
GTTGTAATGCCTTGAGACTT+TGG - chr3_3:12514250-12514269 None:intergenic 40.0%
! AGTCTCAAGGCATTACAACA+TGG + chr3_3:12514251-12514270 Msa0442610:intron 40.0%
ATCCTGGTTCAATGTTGTAG+GGG - chr3_3:12514414-12514433 None:intergenic 40.0%
! CATACCACAGTTGGACTTTT+TGG + chr3_3:12514436-12514455 Msa0442610:intron 40.0%
! TATACAGTGCATGGCATTGA+AGG + chr3_3:12514981-12515000 Msa0442610:intron 40.0%
! TCCTTCTGAAAGGAAAACAG+CGG + chr3_3:12515054-12515073 Msa0442610:CDS 40.0%
AAATGGACATGAGCAAGGTA+CGG - chr3_3:12515131-12515150 None:intergenic 40.0%
AAGTGAAATGGACATGAGCA+AGG - chr3_3:12515136-12515155 None:intergenic 40.0%
ACTCCAACGTTAGATAGAAC+GGG - chr3_3:12515249-12515268 None:intergenic 40.0%
CTGTTTAACCATACCTTCAG+TGG - chr3_3:12515422-12515441 None:intergenic 40.0%
ATGTCTCTAGTCATGATGCT+GGG + chr3_3:12515659-12515678 Msa0442610:CDS 40.0%
AGGGGAATCTAAAAGGGATT+TGG + chr3_3:12515696-12515715 Msa0442610:CDS 40.0%
!! GATTTTCATGGTTCGGGTAT+TGG + chr3_3:12515739-12515758 Msa0442610:CDS 40.0%
! GTCATACCTTCAACTGATTC+AGG - chr3_3:12515901-12515920 None:intergenic 40.0%
CCCTATATAGTGAAGGATGA+TGG + chr3_3:12516288-12516307 Msa0442610:CDS 40.0%
TGTTGGGAATAGTACTCATG+AGG + chr3_3:12516350-12516369 Msa0442610:CDS 40.0%
TGGGTTCAGAAATCATCTTC+AGG + chr3_3:12516458-12516477 Msa0442610:CDS 40.0%
TGTAAGCACTCTTAAAGCAC+TGG - chr3_3:12517229-12517248 None:intergenic 40.0%
GCAAACAGATTATGGACACT+CGG + chr3_3:12517254-12517273 Msa0442610:intron 40.0%
CATTTCTGCTACATTGAGCT+AGG + chr3_3:12517311-12517330 Msa0442610:three_prime_UTR 40.0%
ATTGAGCTAGGGATCTGTTT+AGG + chr3_3:12517323-12517342 Msa0442610:three_prime_UTR 40.0%
ATGAGCCTAAGCTACTTGTA+AGG + chr3_3:12517374-12517393 Msa0442610:three_prime_UTR 40.0%
ACAGACCTTACAAGTAGCTT+AGG - chr3_3:12517382-12517401 None:intergenic 40.0%
GGTAAATAGTCATGTCAAGG+AGG - chr3_3:12517569-12517588 None:intergenic 40.0%
GAAAAGACACGAACCATACA+AGG - chr3_3:12517633-12517652 None:intergenic 40.0%
TCGAGTAGGGTTTGTATGAA+AGG + chr3_3:12517880-12517899 Msa0442610:three_prime_UTR 40.0%
AAATGATGAGGAATGGCATG+CGG + chr3_3:12518036-12518055 Msa0442610:three_prime_UTR 40.0%
TCACTTTAGCACACCTTGTG+CGG - chr3_3:12506100-12506119 None:intergenic 45.0%
GCTTTCTTGTTAGGTGACTG+TGG - chr3_3:12506148-12506167 None:intergenic 45.0%
TTTGTGGCTTTCTTCGCATC+CGG - chr3_3:12506264-12506283 None:intergenic 45.0%
GTTTGAACCATGGATGGTAG+TGG - chr3_3:12506552-12506571 None:intergenic 45.0%
! TGGGAGCATATGAGAGAAAG+AGG + chr3_3:12507692-12507711 Msa0442610:intron 45.0%
CAGCAACAAGCATATCCCAA+AGG + chr3_3:12508006-12508025 Msa0442610:intron 45.0%
! TTTTCTTTCGCCAGGCCTTT+GGG - chr3_3:12508024-12508043 None:intergenic 45.0%
GGATCCTTAATCGGCTGTAA+AGG - chr3_3:12508419-12508438 None:intergenic 45.0%
GACCCATGACCGATTAATTC+TGG + chr3_3:12508773-12508792 Msa0442610:intron 45.0%
CCCTCTAGCAGATATGAGAA+TGG - chr3_3:12508802-12508821 None:intergenic 45.0%
TTCTCATATCTGCTAGAGGG+GGG + chr3_3:12508802-12508821 Msa0442610:intron 45.0%
CTTCTTAGCTCGTGTCTTCA+AGG - chr3_3:12509036-12509055 None:intergenic 45.0%
CTTGAAGACACGAGCTAAGA+AGG + chr3_3:12509034-12509053 Msa0442610:intron 45.0%
CCAAGAACCTCTAACATCGT+CGG - chr3_3:12510409-12510428 None:intergenic 45.0%
GAGGCACAACATGGTCAAAA+AGG + chr3_3:12511406-12511425 Msa0442610:intron 45.0%
GCACAACATGGTCAAAAAGG+TGG + chr3_3:12511409-12511428 Msa0442610:intron 45.0%
!! CTTCGGTTTTGGTCTTCGTT+GGG - chr3_3:12511779-12511798 None:intergenic 45.0%
CGCAAGAGTCTCACACTTAT+GGG - chr3_3:12512116-12512135 None:intergenic 45.0%
ACGCAAGAGTCTCACACTTA+TGG - chr3_3:12512117-12512136 None:intergenic 45.0%
AGCCAAATAAGGTCAACCAG+AGG + chr3_3:12512154-12512173 Msa0442610:intron 45.0%
TGCCTCTGGTTGACCTTATT+TGG - chr3_3:12512159-12512178 None:intergenic 45.0%
!! GTGGGTTGATAGTGGTTTGA+TGG + chr3_3:12512195-12512214 Msa0442610:intron 45.0%
! GATAGTGGTTTGATGGATGG+AGG + chr3_3:12512202-12512221 Msa0442610:intron 45.0%
!! GCATGTGGTTTGGTTTGGTT+CGG + chr3_3:12513551-12513570 Msa0442610:intron 45.0%
!! TTGGTTTGGTTTGGTTCGGT+TGG + chr3_3:12514022-12514041 Msa0442610:intron 45.0%
GCAAACCAAACCAAACCATG+TGG + chr3_3:12514058-12514077 Msa0442610:intron 45.0%
!! CTCAACCACATGGTTTGGTT+TGG - chr3_3:12514066-12514085 None:intergenic 45.0%
TGCCTTGAGACTTTGGATGA+AGG - chr3_3:12514243-12514262 None:intergenic 45.0%
GTTCAATGTTGTAGGGGAGA+GGG - chr3_3:12514408-12514427 None:intergenic 45.0%
CCAACTGTGGTATGATATCC+TGG - chr3_3:12514430-12514449 None:intergenic 45.0%
CCAGGATATCATACCACAGT+TGG + chr3_3:12514427-12514446 Msa0442610:intron 45.0%
! ACCACAGTTGGACTTTTTGG+TGG + chr3_3:12514439-12514458 Msa0442610:intron 45.0%
TCCACCAAAAAGTCCAACTG+TGG - chr3_3:12514443-12514462 None:intergenic 45.0%
TGGTGGAGCCAACAATAATG+TGG + chr3_3:12514456-12514475 Msa0442610:intron 45.0%
TGGATCAACACATCGGAGAA+AGG + chr3_3:12514476-12514495 Msa0442610:intron 45.0%
GGATCAACACATCGGAGAAA+GGG + chr3_3:12514477-12514496 Msa0442610:intron 45.0%
AGTCAGTGGTATTCCAGAGA+CGG - chr3_3:12515009-12515028 None:intergenic 45.0%
!! ATACCACTGACTTCTGACTC+AGG + chr3_3:12515017-12515036 Msa0442610:CDS 45.0%
TTTCCTGAGTCAGAAGTCAG+TGG - chr3_3:12515023-12515042 None:intergenic 45.0%
!! GCTGTTTTCCTTTCAGAAGG+AGG - chr3_3:12515055-12515074 None:intergenic 45.0%
! CCTTCTGAAAGGAAAACAGC+GGG + chr3_3:12515055-12515074 Msa0442610:CDS 45.0%
AATGGACATGAGCAAGGTAC+GGG - chr3_3:12515130-12515149 None:intergenic 45.0%
TCTCCCGTTCTATCTAACGT+TGG + chr3_3:12515243-12515262 Msa0442610:intron 45.0%
TGTTGTCCTTCCCTGAAAGT+TGG + chr3_3:12515317-12515336 Msa0442610:intron 45.0%
! TCCTTCCCTGAAAGTTGGTT+TGG + chr3_3:12515322-12515341 Msa0442610:intron 45.0%
TCCAAACCAACTTTCAGGGA+AGG - chr3_3:12515326-12515345 None:intergenic 45.0%
CTGCTCCAAACCAACTTTCA+GGG - chr3_3:12515330-12515349 None:intergenic 45.0%
ACTGCTCCAAACCAACTTTC+AGG - chr3_3:12515331-12515350 None:intergenic 45.0%
GCAGTAGATGTAGACTGACT+CGG - chr3_3:12515556-12515575 None:intergenic 45.0%
!!! GTCCTTTTGGTTCAAGGTCT+GGG + chr3_3:12515626-12515645 Msa0442610:CDS 45.0%
AACCCAGACCTTGAACCAAA+AGG - chr3_3:12515631-12515650 None:intergenic 45.0%
CATGTCTCTAGTCATGATGC+TGG + chr3_3:12515658-12515677 Msa0442610:CDS 45.0%
CTGGGCATGCTAATTCTGAA+GGG + chr3_3:12515677-12515696 Msa0442610:CDS 45.0%
! TGGGCATGCTAATTCTGAAG+GGG + chr3_3:12515678-12515697 Msa0442610:CDS 45.0%
GACGTACTAGAAACAAGGAC+AGG + chr3_3:12515776-12515795 Msa0442610:CDS 45.0%
GGTGAATTCTCAACTTCTGC+AGG + chr3_3:12516084-12516103 Msa0442610:CDS 45.0%
GAATTCTCAACTTCTGCAGG+TGG + chr3_3:12516087-12516106 Msa0442610:CDS 45.0%
AGTAGTCCCTCTGTTGAGAA+TGG + chr3_3:12516114-12516133 Msa0442610:CDS 45.0%
CACCAACCATTCTCAACAGA+GGG - chr3_3:12516123-12516142 None:intergenic 45.0%
ACACCAACCATTCTCAACAG+AGG - chr3_3:12516124-12516143 None:intergenic 45.0%
ACAGGGCAATTCAAGCAAAG+AGG - chr3_3:12516408-12516427 None:intergenic 45.0%
GAGCTCAACTGACTGTTGAA+TGG + chr3_3:12516691-12516710 Msa0442610:intron 45.0%
TCAATTCTACAGGCTCTGTC+AGG - chr3_3:12517527-12517546 None:intergenic 45.0%
GACAGAGCCTGTAGAATTGA+AGG + chr3_3:12517527-12517546 Msa0442610:three_prime_UTR 45.0%
AATGATGAGGAATGGCATGC+GGG + chr3_3:12518037-12518056 Msa0442610:three_prime_UTR 45.0%
!! ATTAAAACATTAAAAAAATT+TGG - chr3_3:12506826-12506845 None:intergenic 5.0%
!!! ATTAAAAAAACTTTATATTT+TGG - chr3_3:12508613-12508632 None:intergenic 5.0%
ACTTTAGCACACCTTGTGCG+GGG - chr3_3:12506098-12506117 None:intergenic 50.0%
CACTTTAGCACACCTTGTGC+GGG - chr3_3:12506099-12506118 None:intergenic 50.0%
CATCCGGTACCTATTGCGTT+TGG - chr3_3:12506248-12506267 None:intergenic 50.0%
! TGTCGCTTAGCTCAGTCTGT+TGG + chr3_3:12506484-12506503 Msa0442610:intron 50.0%
GTCGCTTAGCTCAGTCTGTT+GGG + chr3_3:12506485-12506504 Msa0442610:intron 50.0%
!! TCTAAGTTTTGGTCTCGCGG+TGG - chr3_3:12507723-12507742 None:intergenic 50.0%
ACAAGCATATCCCAAAGGCC+TGG + chr3_3:12508011-12508030 Msa0442610:intron 50.0%
! CTTTTCTTTCGCCAGGCCTT+TGG - chr3_3:12508025-12508044 None:intergenic 50.0%
! GTTCACGCTTTTCTTTCGCC+AGG - chr3_3:12508032-12508051 None:intergenic 50.0%
!! TGCTAGAGGGGGGCATTTAA+AGG + chr3_3:12508812-12508831 Msa0442610:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+AGG + chr3_3:12509640-12509659 Msa0442610:intron 50.0%
CCGACGATGTTAGAGGTTCT+TGG + chr3_3:12510406-12510425 Msa0442610:intron 50.0%
ATGGACACAGAGTCGCACAT+TGG - chr3_3:12511347-12511366 None:intergenic 50.0%
AGTCAAACAAGGTCACACGG+AGG + chr3_3:12511387-12511406 Msa0442610:intron 50.0%
!! CCTTCGGTTTTGGTCTTCGT+TGG - chr3_3:12511780-12511799 None:intergenic 50.0%
CCAACGAAGACCAAAACCGA+AGG + chr3_3:12511777-12511796 Msa0442610:intron 50.0%
GTGTGAGACTCTTGCGTATG+AGG + chr3_3:12512120-12512139 Msa0442610:intron 50.0%
AGACTCTTGCGTATGAGGTC+TGG + chr3_3:12512125-12512144 Msa0442610:intron 50.0%
! ACATTAGGCTAGGGTGTTCG+CGG + chr3_3:12513474-12513493 Msa0442610:intron 50.0%
GTTCGCGGTGCAGTTTAGTT+CGG + chr3_3:12513489-12513508 Msa0442610:intron 50.0%
!! ACGGTTTGAGTTGGATCGGT+TGG + chr3_3:12513618-12513637 Msa0442610:intron 50.0%
!! TTGAGTTGGATCGGTTGGTG+CGG + chr3_3:12513623-12513642 Msa0442610:intron 50.0%
!! TAGGTGGTGGATCACGAACA+CGG - chr3_3:12514378-12514397 None:intergenic 50.0%
GGTTCAATGTTGTAGGGGAG+AGG - chr3_3:12514409-12514428 None:intergenic 50.0%
CTCCCCTACAACATTGAACC+AGG + chr3_3:12514409-12514428 Msa0442610:intron 50.0%
!! CCCGCTGTTTTCCTTTCAGA+AGG - chr3_3:12515058-12515077 None:intergenic 50.0%
CAGCGGGAAATTCCCAAAGT+AGG + chr3_3:12515071-12515090 Msa0442610:intron 50.0%
ATGAGCAAGGTACGGGTGAA+GGG - chr3_3:12515123-12515142 None:intergenic 50.0%
TGGAACTTTCAGGCCACTGA+AGG + chr3_3:12515406-12515425 Msa0442610:intron 50.0%
CTTTCAGGCCACTGAAGGTA+TGG + chr3_3:12515411-12515430 Msa0442610:intron 50.0%
AAGCCGGTGGAAGATTGATC+AGG + chr3_3:12515503-12515522 Msa0442610:CDS 50.0%
GCTCCTGATCAATCTTCCAC+CGG - chr3_3:12515509-12515528 None:intergenic 50.0%
CTTGAACCAAAAGGACGAGG+TGG - chr3_3:12515622-12515641 None:intergenic 50.0%
!!! CACCTCGTCCTTTTGGTTCA+AGG + chr3_3:12515620-12515639 Msa0442610:CDS 50.0%
GACCTTGAACCAAAAGGACG+AGG - chr3_3:12515625-12515644 None:intergenic 50.0%
!!! CGTCCTTTTGGTTCAAGGTC+TGG + chr3_3:12515625-12515644 Msa0442610:CDS 50.0%
GCTGGGCATGCTAATTCTGA+AGG + chr3_3:12515676-12515695 Msa0442610:CDS 50.0%
TGAGCTCTCATCATCCTCAC+TGG + chr3_3:12515855-12515874 Msa0442610:CDS 50.0%
GCTTATTCGGGAAACAGGAG+TGG + chr3_3:12516063-12516082 Msa0442610:CDS 50.0%
GTCCCTCTGTTGAGAATGGT+TGG + chr3_3:12516118-12516137 Msa0442610:intron 50.0%
TGGGGCTCCCTATATAGTGA+AGG + chr3_3:12516281-12516300 Msa0442610:CDS 50.0%
GTGCAGTCAGTTCGAGTGAA+GGG + chr3_3:12516310-12516329 Msa0442610:CDS 50.0%
ACATCATCCGCGTCCAATTC+AGG + chr3_3:12517346-12517365 Msa0442610:three_prime_UTR 50.0%
ATGTCGACCTGAATTGGACG+CGG - chr3_3:12517356-12517375 None:intergenic 50.0%
AGGCTCATGTCGACCTGAAT+TGG - chr3_3:12517362-12517381 None:intergenic 50.0%
AGGCTCTGTCAGGCAACAAT+TGG - chr3_3:12517517-12517536 None:intergenic 50.0%
AAGGGTCTAGCCCATCAACA+TGG - chr3_3:12517614-12517633 None:intergenic 50.0%
!! TGATGGGCTAGACCCTTGTA+TGG + chr3_3:12517617-12517636 Msa0442610:three_prime_UTR 50.0%
ACCCTAAATGTGGGTTCCGT+GGG + chr3_3:12517806-12517825 Msa0442610:three_prime_UTR 50.0%
ACCCACGGAACCCACATTTA+GGG - chr3_3:12517810-12517829 None:intergenic 50.0%
AACCCACGGAACCCACATTT+AGG - chr3_3:12517811-12517830 None:intergenic 50.0%
! TGTTCCGCGTTTAGAACCCA+CGG - chr3_3:12517825-12517844 None:intergenic 50.0%
TTCGGTACACATCCCAGATG+AGG + chr3_3:12517985-12518004 Msa0442610:three_prime_UTR 50.0%
TCGGTACACATCCCAGATGA+GGG + chr3_3:12517986-12518005 Msa0442610:three_prime_UTR 50.0%
AGAGTGAATCACCCCGCACA+AGG + chr3_3:12506084-12506103 Msa0442610:CDS 55.0%
AAGGTCCAGGGTCCAAATCC+CGG + chr3_3:12506526-12506545 Msa0442610:intron 55.0%
!! AACCATGGATGGTAGTGGCC+GGG - chr3_3:12506547-12506566 None:intergenic 55.0%
!! GAACCATGGATGGTAGTGGC+CGG - chr3_3:12506548-12506567 None:intergenic 55.0%
GGTGGGGTTTGAACCATGGA+TGG - chr3_3:12506558-12506577 None:intergenic 55.0%
AGTGGGTGGGGTTTGAACCA+TGG - chr3_3:12506562-12506581 None:intergenic 55.0%
! GGTCAACCAGAGGCACAACA+TGG + chr3_3:12512164-12512183 Msa0442610:intron 55.0%
!! AGAGGGAGTGTTCTAGGTGG+TGG - chr3_3:12514391-12514410 None:intergenic 55.0%
!! TAGGGGAGAGGGAGTGTTCT+AGG - chr3_3:12514397-12514416 None:intergenic 55.0%
ACGGAATTCTAGCCCGTGCT+TGG + chr3_3:12514656-12514675 Msa0442610:intron 55.0%
ATTCTAGCCCGTGCTTGGCA+CGG + chr3_3:12514661-12514680 Msa0442610:intron 55.0%
! GGCATTGAAGGTTCCGTCTC+TGG + chr3_3:12514993-12515012 Msa0442610:CDS 55.0%
CATGAGCAAGGTACGGGTGA+AGG - chr3_3:12515124-12515143 None:intergenic 55.0%
! CAGAACCAAAGGCGTGAAGC+CGG + chr3_3:12515487-12515506 Msa0442610:CDS 55.0%
AACAAGGACAGGCCTGATCG+TGG + chr3_3:12515787-12515806 Msa0442610:CDS 55.0%
ACAGGCCTGATCGTGGTGTT+TGG + chr3_3:12515794-12515813 Msa0442610:CDS 55.0%
CAGGCCTGATCGTGGTGTTT+GGG + chr3_3:12515795-12515814 Msa0442610:CDS 55.0%
GAAGAATCGGAACGGCGAAG+AGG - chr3_3:12515823-12515842 None:intergenic 55.0%
GGTGCAGTCAGTTCGAGTGA+AGG + chr3_3:12516309-12516328 Msa0442610:CDS 55.0%
CACCCTAAATGTGGGTTCCG+TGG + chr3_3:12517805-12517824 Msa0442610:three_prime_UTR 55.0%
!! GGTTCCGTGGGTTCTAAACG+CGG + chr3_3:12517818-12517837 Msa0442610:three_prime_UTR 55.0%
!! GGATGGTAGTGGCCGGGATT+TGG - chr3_3:12506541-12506560 None:intergenic 60.0%
ATCCCGGCCACTACCATCCA+TGG + chr3_3:12506542-12506561 Msa0442610:intron 60.0%
! GGTCACACGGAGGCACAACA+TGG + chr3_3:12511397-12511416 Msa0442610:intron 60.0%
!! GGGAGAGGGAGTGTTCTAGG+TGG - chr3_3:12514394-12514413 None:intergenic 60.0%
TTCTAGCCCGTGCTTGGCAC+GGG + chr3_3:12514662-12514681 Msa0442610:intron 60.0%
ATGGACACCCGTGCCAAGCA+CGG - chr3_3:12514672-12514691 None:intergenic 60.0%
! AACCAAAGGCGTGAAGCCGG+TGG + chr3_3:12515490-12515509 Msa0442610:CDS 60.0%
!! TTCCACCGGCTTCACGCCTT+TGG - chr3_3:12515495-12515514 None:intergenic 60.0%
! AGGCGTCCACCTCGTCCTTT+TGG + chr3_3:12515613-12515632 Msa0442610:CDS 60.0%
GGTGCCCAAACACCACGATC+AGG - chr3_3:12515802-12515821 None:intergenic 60.0%
TGGTGCAGACTGTGCCAGTG+AGG - chr3_3:12515872-12515891 None:intergenic 60.0%
AGTGGCCGGGATTTGGACCC+TGG - chr3_3:12506534-12506553 None:intergenic 65.0%
TGGACACCCGTGCCAAGCAC+GGG - chr3_3:12514671-12514690 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 12506063 12518069 12506063 ID=Msa0442610;Name=Msa0442610
chr3_3 mRNA 12506063 12518069 12506063 ID=Msa0442610-mRNA-1;Parent=Msa0442610;Name=Msa0442610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.85|0.75|0.87|0.71|0.75|8|709|294
chr3_3 exon 12506063 12506105 12506063 ID=Msa0442610-mRNA-1:exon:2678;Parent=Msa0442610-mRNA-1
chr3_3 exon 12514988 12515088 12514988 ID=Msa0442610-mRNA-1:exon:2679;Parent=Msa0442610-mRNA-1
chr3_3 exon 12515418 12515913 12515418 ID=Msa0442610-mRNA-1:exon:2680;Parent=Msa0442610-mRNA-1
chr3_3 exon 12516046 12516135 12516046 ID=Msa0442610-mRNA-1:exon:2681;Parent=Msa0442610-mRNA-1
chr3_3 exon 12516256 12516371 12516256 ID=Msa0442610-mRNA-1:exon:2682;Parent=Msa0442610-mRNA-1
chr3_3 exon 12516449 12516497 12516449 ID=Msa0442610-mRNA-1:exon:2683;Parent=Msa0442610-mRNA-1
chr3_3 exon 12517262 12517395 12517262 ID=Msa0442610-mRNA-1:exon:2684;Parent=Msa0442610-mRNA-1
chr3_3 exon 12517505 12518069 12517505 ID=Msa0442610-mRNA-1:exon:2685;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12506063 12506105 12506063 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12514988 12515088 12514988 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12515418 12515913 12515418 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12516046 12516135 12516046 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12516256 12516371 12516256 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 CDS 12516449 12516487 12516449 ID=Msa0442610-mRNA-1:cds;Parent=Msa0442610-mRNA-1
chr3_3 three_prime_UTR 12516488 12516497 12516488 ID=Msa0442610-mRNA-1:three_prime_utr;Parent=Msa0442610-mRNA-1
chr3_3 three_prime_UTR 12517262 12517395 12517262 ID=Msa0442610-mRNA-1:three_prime_utr;Parent=Msa0442610-mRNA-1
chr3_3 three_prime_UTR 12517505 12518069 12517505 ID=Msa0442610-mRNA-1:three_prime_utr;Parent=Msa0442610-mRNA-1
Gene Sequence

>Msa0442610

ATGGAATATATTGCTCAAAAGAGAGTGAATCACCCCGCACAAGTGCATGGCATTGAAGGTTCCGTCTCTGGAATACCACTGACTTCTGACTCAGGAAAGAAAAAGATCCTCCTTCTGAAAGGAAAACAGCGGGAAATTCCCAAAGCCACTGAAGGTATGGTTAAACAGCAAAATGCACAATCTGCAAATTCGCCCATTCCATCTACTTCAAAACAGAACCAAAGGCGTGAAGCCGGTGGAAGATTGATCAGGAGCATACTTCTAAATAATGAATCTCGTCCGAGTCAGTCTACATCTACTGCGCAACATAAGATTCAAATCTTAACTTCTGAGAATGGAAGGCGTCCACCTCGTCCTTTTGGTTCAAGGTCTGGGTTAAGTGATCATGTCTCTAGTCATGATGCTGGGCATGCTAATTCTGAAGGGGAATCTAAAAGGGATTTGGATGAAAAGTTTGTAAGAAGAGATTTTCATGGTTCGGGTATTGGTGATAAAACAGAAAGACGTACTAGAAACAAGGACAGGCCTGATCGTGGTGTTTGGGCACCTCTTCGCCGTTCCGATTCTTCACATTCTAGTAATGAGCTCTCATCATCCTCACTGGCACAGTCTGCACCATCATATCCTGAATCAGTTGAAGGAGAGGTAAAAGAAAATGCTTATTCGGGAAACAGGAGTGGTGAATTCTCAACTTCTGCAGGTGGACGTAGTAGTCCCTCTGTTGAGAATGGTTCGCAAAGAATTTTTACTCGTCGTGGGGCTCCCTATATAGTGAAGGATGATGGTGCAGTCAGTTCGAGTGAAGGGAAACTTTCAAAGAAAGGTGTTGGGAATAGTACTCATGAGAAACAAGTTTGGGTTCAGAAATCATCTTCAGGCTCTTAA

Protein sequence

>Msa0442610

MEYIAQKRVNHPAQVHGIEGSVSGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQQNAQSANSPIPSTSKQNQRREAGGRLIRSILLNNESRPSQSTSTAQHKIQILTSENGRRPPRPFGSRSGLSDHVSSHDAGHANSEGESKRDLDEKFVRRDFHGSGIGDKTERRTRNKDRPDRGVWAPLRRSDSSHSSNELSSSSLAQSAPSYPESVEGEVKENAYSGNRSGEFSTSAGGRSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKKGVGNSTHEKQVWVQKSSSGS*