AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306840 MtrunA17_Chr8g0377671 97.909 287 6 0 1 287 1 287 0.0 552
Msa1306840 MtrunA17_Chr8g0377191 71.642 201 57 0 13 213 5 205 2.96e-97 284
Msa1306840 MtrunA17_Chr8g0377191 56.329 158 69 0 113 270 13 170 9.88e-53 171
Msa1306840 MtrunA17_Chr8g0377191 50.000 114 57 0 156 269 10 123 8.68e-29 109
Msa1306840 MtrunA17_Chr8g0385241 46.471 340 102 3 12 271 2 341 3.12e-84 259
Msa1306840 MtrunA17_Chr8g0385241 38.889 162 75 2 21 158 182 343 1.27e-22 96.7
Msa1306840 MtrunA17_Chr4g0059911 51.737 259 123 2 15 271 4 262 3.07e-80 247
Msa1306840 MtrunA17_Chr2g0316631 43.561 264 149 0 15 278 31 294 1.97e-68 214
Msa1306840 MtrunA17_Chr2g0316631 39.000 200 122 0 20 219 105 304 8.90e-44 151
Msa1306840 MtrunA17_Chr8g0382971 41.916 334 132 4 15 286 20 353 1.98e-68 216
Msa1306840 MtrunA17_Chr8g0377211 69.481 154 46 1 134 287 19 171 2.21e-68 209
Msa1306840 MtrunA17_Chr8g0377211 58.192 177 50 2 1 177 1 153 3.83e-60 189
Msa1306840 MtrunA17_Chr2g0316611 42.412 257 148 0 15 271 31 287 6.71e-67 213
Msa1306840 MtrunA17_Chr2g0316611 40.873 252 149 0 20 271 105 356 4.28e-59 192
Msa1306840 MtrunA17_Chr2g0316611 39.303 201 122 0 19 219 173 373 1.05e-41 147
Msa1306840 MtrunA17_Chr8g0380791 53.646 192 89 0 8 199 1 192 4.03e-64 214
Msa1306840 MtrunA17_Chr8g0380791 40.252 159 95 0 111 269 12 170 1.14e-31 124
Msa1306840 MtrunA17_Chr8g0380791 38.938 113 69 0 156 268 11 123 1.75e-15 76.6
Msa1306840 MtrunA17_Chr6g0467061 44.130 247 138 0 20 266 88 334 2.40e-62 200
Msa1306840 MtrunA17_Chr6g0467061 38.384 297 133 3 14 283 13 286 2.87e-57 187
Msa1306840 MtrunA17_Chr6g0467061 43.575 179 101 0 20 198 157 335 8.19e-39 139
Msa1306840 MtrunA17_Chr8g0383331 62.195 164 61 1 109 271 1 164 4.32e-62 193
Msa1306840 MtrunA17_Chr8g0383331 58.974 156 63 1 63 217 1 156 4.65e-57 181
Msa1306840 MtrunA17_Chr8g0383331 53.741 147 68 0 20 166 4 150 1.20e-46 154
Msa1306840 MtrunA17_Chr8g0383551 41.901 284 104 7 13 264 20 274 1.23e-54 181
Msa1306840 MtrunA17_Chr8g0383551 34.513 226 91 5 85 269 24 233 2.48e-26 106
Msa1306840 MtrunA17_Chr5g0424111 43.094 181 103 0 14 194 191 371 3.53e-40 145
Msa1306840 MtrunA17_Chr5g0424111 39.560 182 103 1 95 269 173 354 1.26e-34 130
Msa1306840 MtrunA17_Chr5g0424111 37.853 177 110 0 65 241 196 372 1.10e-30 119
Msa1306840 MtrunA17_Chr8g0377221 34.934 229 137 3 18 244 3 221 1.00e-39 139
Msa1306840 MtrunA17_Chr8g0377221 37.288 118 74 0 154 271 1 118 4.83e-19 84.7
Msa1306840 MtrunA17_Chr8g0377221 29.101 189 119 2 89 262 5 193 3.01e-17 79.7
Msa1306840 MtrunA17_Chr8g0353121 39.024 205 123 1 8 210 39 243 1.07e-39 147
Msa1306840 MtrunA17_Chr8g0353121 35.426 223 138 3 62 281 51 270 2.32e-30 120
Msa1306840 MtrunA17_Chr1g0180261 40.323 186 111 0 14 199 45 230 1.42e-37 141
Msa1306840 MtrunA17_Chr1g0180261 38.798 183 112 0 63 245 48 230 2.57e-30 120
Msa1306840 MtrunA17_Chr1g0180261 36.250 160 102 0 109 268 48 207 4.00e-25 105
Msa1306840 MtrunA17_Chr1g0180261 30.657 137 95 0 134 270 50 186 1.75e-13 70.5
Msa1306840 MtrunA17_Chr3g0082501 37.255 204 118 1 16 209 60 263 3.74e-37 139
Msa1306840 MtrunA17_Chr3g0082501 34.597 211 137 1 67 277 65 274 5.65e-31 122
Msa1306840 MtrunA17_Chr5g0424301 40.113 177 106 0 7 183 56 232 5.73e-37 139
Msa1306840 MtrunA17_Chr5g0424301 35.220 159 103 0 112 270 69 227 1.92e-25 105
Msa1306840 MtrunA17_Chr5g0424301 32.984 191 122 2 39 229 48 232 5.98e-25 104
Msa1306840 MtrunA17_Chr5g0424301 37.681 138 86 0 134 271 68 205 3.48e-22 96.3
Msa1306840 MtrunA17_Chr1g0171491 40.217 184 110 0 16 199 57 240 5.35e-36 136
Msa1306840 MtrunA17_Chr1g0171491 32.456 228 147 2 67 287 62 289 4.62e-30 119
Msa1306840 MtrunA17_Chr1g0171491 36.970 165 102 1 104 268 55 217 1.96e-26 108
Msa1306840 MtrunA17_Chr1g0171491 34.975 203 130 1 27 229 47 247 4.43e-26 107
Msa1306840 MtrunA17_Chr7g0233351 40.556 180 107 0 17 196 189 368 3.73e-35 131
Msa1306840 MtrunA17_Chr7g0233351 39.884 173 104 0 44 216 193 365 6.64e-32 122
Msa1306840 MtrunA17_Chr7g0233351 35.294 187 121 0 62 248 188 374 1.28e-31 122
Msa1306840 MtrunA17_Chr7g0233351 39.506 162 98 0 108 269 188 349 7.57e-30 117
Msa1306840 MtrunA17_Chr7g0233351 36.571 175 111 0 90 264 193 367 5.16e-28 112
Msa1306840 MtrunA17_Chr8g0336161 39.891 183 110 0 14 196 191 373 6.91e-34 128
Msa1306840 MtrunA17_Chr8g0336161 36.957 184 116 0 65 248 196 379 1.22e-30 119
Msa1306840 MtrunA17_Chr8g0336161 39.506 162 98 0 108 269 193 354 8.13e-28 111
Msa1306840 MtrunA17_Chr3g0114791 39.560 182 108 1 14 193 177 358 7.23e-34 127
Msa1306840 MtrunA17_Chr3g0114791 35.326 184 119 0 53 236 172 355 1.97e-30 118
Msa1306840 MtrunA17_Chr3g0114791 37.423 163 102 0 106 268 179 341 2.80e-29 115
Msa1306840 MtrunA17_Chr3g0114791 32.500 200 132 1 84 283 180 376 1.29e-25 105
Msa1306840 MtrunA17_Chr3g0114791 37.391 115 72 0 148 262 175 289 7.66e-16 77.0
Msa1306840 MtrunA17_Chr3g0115111 37.158 183 114 1 8 189 45 227 2.05e-32 126
Msa1306840 MtrunA17_Chr3g0115111 32.653 196 129 2 76 270 23 216 6.30e-27 110
Msa1306840 MtrunA17_Chr3g0115111 33.032 221 138 4 39 258 35 246 1.63e-26 108
Msa1306840 MtrunA17_Chr3g0115111 36.471 170 102 2 21 189 82 246 1.77e-22 97.1
Msa1306840 MtrunA17_Chr3g0115111 35.971 139 88 1 134 271 56 194 7.57e-20 89.4
Msa1306840 MtrunA17_Chr4g0055371 39.205 176 107 0 41 216 170 345 3.17e-32 123
Msa1306840 MtrunA17_Chr4g0055371 38.889 162 99 0 108 269 168 329 8.17e-28 111
Msa1306840 MtrunA17_Chr4g0055371 33.514 185 123 0 58 242 164 348 3.71e-27 109
Msa1306840 MtrunA17_Chr4g0055371 35.227 176 114 0 89 264 172 347 6.12e-26 105
Msa1306840 MtrunA17_Chr7g0256301 40.113 177 106 0 14 190 65 241 6.09e-32 124
Msa1306840 MtrunA17_Chr7g0256301 38.217 157 97 0 112 268 71 227 3.76e-24 102
Msa1306840 MtrunA17_Chr7g0256301 35.673 171 110 0 66 236 71 241 2.33e-23 99.8
Msa1306840 MtrunA17_Chr7g0256301 33.918 171 113 0 89 259 71 241 1.39e-21 94.7
Msa1306840 MtrunA17_Chr8g0377201 64.368 87 31 0 201 287 1 87 1.74e-31 112
Msa1306840 MtrunA17_Chr8g0377201 54.545 66 30 0 63 128 1 66 4.17e-17 74.7
Msa1306840 MtrunA17_Chr8g0377201 59.677 62 25 0 109 170 1 62 2.83e-16 72.4
Msa1306840 MtrunA17_Chr8g0377201 68.889 45 14 0 19 63 26 70 2.95e-13 64.3
Msa1306840 MtrunA17_Chr8g0377201 43.284 67 38 0 89 155 4 70 3.40e-11 58.5
Msa1306840 MtrunA17_Chr3g0131001 41.714 175 102 0 16 190 51 225 2.27e-31 123
Msa1306840 MtrunA17_Chr3g0131001 36.723 177 112 0 64 240 53 229 4.28e-21 93.2
Msa1306840 MtrunA17_Chr3g0131001 34.503 171 112 0 89 259 55 225 2.36e-19 87.8
Msa1306840 MtrunA17_Chr3g0131001 37.107 159 100 0 112 270 55 213 6.27e-19 86.7
Msa1306840 MtrunA17_Chr3g0131001 38.406 138 85 0 134 271 54 191 2.73e-18 84.7
Msa1306840 MtrunA17_Chr8g0385201 37.158 183 113 2 14 195 24 205 5.24e-29 116
Msa1306840 MtrunA17_Chr8g0385201 38.125 160 98 1 112 270 30 189 4.29e-27 110
Msa1306840 MtrunA17_Chr8g0385201 36.041 197 120 4 67 258 31 226 2.74e-25 105
Msa1306840 MtrunA17_Chr5g0398011 46.903 113 60 0 18 130 33 145 8.50e-27 102
Msa1306840 MtrunA17_Chr5g0398011 37.607 117 73 0 155 271 32 148 1.78e-20 85.5
Msa1306840 MtrunA17_Chr5g0398011 29.655 145 96 1 32 176 7 145 2.81e-13 66.2
Msa1306840 MtrunA17_Chr5g0398011 32.456 114 77 0 109 222 32 145 3.44e-13 65.9
Msa1306840 MtrunA17_Chr5g0398021 45.192 104 57 0 20 123 13 116 7.10e-24 94.7
Msa1306840 MtrunA17_Chr5g0398021 35.338 133 86 0 155 287 10 142 4.04e-20 84.7
Msa1306840 MtrunA17_Chr5g0398021 33.621 116 77 0 102 217 3 118 6.55e-16 73.6
Msa1306840 MtrunA17_Chr5g0398021 37.383 107 67 0 63 169 10 116 2.74e-15 71.6
Msa1306840 MtrunA17_Chr5g0398021 29.730 111 78 0 81 191 5 115 4.03e-14 68.6
Msa1306840 MtrunA17_Chr3g0085921 63.333 60 22 0 196 255 2 61 2.00e-19 81.6
Msa1306840 MtrunA17_Chr3g0085921 60.000 60 24 0 150 209 2 61 5.23e-18 77.8
Msa1306840 MtrunA17_Chr3g0085921 57.627 59 25 0 105 163 3 61 2.41e-17 76.3
Msa1306840 MtrunA17_Chr3g0085921 57.627 59 25 0 59 117 3 61 8.07e-16 72.0
Msa1306840 MtrunA17_Chr1g0210831 37.069 116 73 0 78 193 625 740 3.34e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306840 AT1G60890.1 49.206 189 96 0 16 204 7 195 1.22e-54 189
Msa1306840 AT1G60890.1 41.209 182 107 0 65 246 10 191 3.33e-40 149
Msa1306840 AT1G60890.1 40.881 159 94 0 111 269 10 168 5.23e-33 128
Msa1306840 AT1G60890.2 49.206 189 96 0 16 204 19 207 1.23e-54 189
Msa1306840 AT1G60890.2 41.209 182 107 0 65 246 22 203 2.98e-40 149
Msa1306840 AT1G60890.2 40.881 159 94 0 111 269 22 180 4.50e-33 128
Msa1306840 AT1G10900.2 46.032 189 102 0 16 204 7 195 7.35e-50 176
Msa1306840 AT1G10900.2 38.798 183 112 0 64 246 9 191 4.66e-37 139
Msa1306840 AT1G10900.2 38.750 160 98 0 110 269 9 168 1.23e-29 118
Msa1306840 AT1G10900.1 46.032 189 102 0 16 204 7 195 7.35e-50 176
Msa1306840 AT1G10900.1 38.798 183 112 0 64 246 9 191 4.66e-37 139
Msa1306840 AT1G10900.1 38.750 160 98 0 110 269 9 168 1.23e-29 118
Msa1306840 AT1G10900.3 46.032 189 102 0 16 204 7 195 7.35e-50 176
Msa1306840 AT1G10900.3 38.798 183 112 0 64 246 9 191 4.66e-37 139
Msa1306840 AT1G10900.3 38.750 160 98 0 110 269 9 168 1.23e-29 118
Msa1306840 AT3G07960.2 40.541 185 110 0 16 200 23 207 3.66e-39 145
Msa1306840 AT3G07960.2 34.634 205 121 2 67 265 28 225 1.40e-31 123
Msa1306840 AT3G07960.2 40.764 157 93 0 112 268 27 183 2.07e-31 123
Msa1306840 AT3G07960.2 38.938 113 69 0 20 132 96 208 1.90e-14 73.9
Msa1306840 AT3G07960.4 40.541 185 110 0 16 200 23 207 3.66e-39 145
Msa1306840 AT3G07960.4 34.634 205 121 2 67 265 28 225 1.40e-31 123
Msa1306840 AT3G07960.4 40.764 157 93 0 112 268 27 183 2.07e-31 123
Msa1306840 AT3G07960.4 38.938 113 69 0 20 132 96 208 1.90e-14 73.9
Msa1306840 AT3G07960.3 40.541 185 110 0 16 200 23 207 5.14e-39 144
Msa1306840 AT3G07960.3 34.634 205 121 2 67 265 28 225 2.09e-31 123
Msa1306840 AT3G07960.3 40.764 157 93 0 112 268 27 183 2.77e-31 122
Msa1306840 AT3G07960.3 38.938 113 69 0 20 132 96 208 2.06e-14 73.6
Msa1306840 AT1G21980.1 41.714 175 102 0 16 190 72 246 5.28e-39 145
Msa1306840 AT1G21980.1 36.216 185 114 1 56 236 62 246 2.21e-30 120
Msa1306840 AT1G21980.1 37.736 159 99 0 112 270 76 234 2.82e-29 117
Msa1306840 AT3G07960.1 40.541 185 110 0 16 200 23 207 1.01e-38 144
Msa1306840 AT3G07960.1 34.634 205 121 2 67 265 28 225 3.04e-31 123
Msa1306840 AT3G07960.1 40.764 157 93 0 112 268 27 183 4.17e-31 122
Msa1306840 AT3G07960.1 38.938 113 69 0 20 132 96 208 2.63e-14 73.6
Msa1306840 AT3G09920.3 41.935 186 108 0 14 199 47 232 1.67e-38 144
Msa1306840 AT3G09920.3 40.437 183 109 0 63 245 50 232 4.05e-33 128
Msa1306840 AT3G09920.3 39.752 161 97 0 109 269 50 210 2.35e-26 108
Msa1306840 AT3G09920.4 41.935 186 108 0 14 199 47 232 1.67e-38 144
Msa1306840 AT3G09920.4 40.437 183 109 0 63 245 50 232 4.05e-33 128
Msa1306840 AT3G09920.4 39.752 161 97 0 109 269 50 210 2.35e-26 108
Msa1306840 AT3G09920.2 41.935 186 108 0 14 199 47 232 1.67e-38 144
Msa1306840 AT3G09920.2 40.437 183 109 0 63 245 50 232 4.05e-33 128
Msa1306840 AT3G09920.2 39.752 161 97 0 109 269 50 210 2.35e-26 108
Msa1306840 AT3G09920.1 41.935 186 108 0 14 199 47 232 1.67e-38 144
Msa1306840 AT3G09920.1 40.437 183 109 0 63 245 50 232 4.05e-33 128
Msa1306840 AT3G09920.1 39.752 161 97 0 109 269 50 210 2.35e-26 108
Msa1306840 AT2G41210.1 36.765 204 120 1 16 210 66 269 8.26e-36 136
Msa1306840 AT2G41210.1 35.754 179 115 0 67 245 71 249 5.16e-28 114
Msa1306840 AT2G41210.1 36.364 165 103 1 104 268 64 226 3.56e-26 108
Msa1306840 AT3G56960.2 36.453 203 120 1 16 209 68 270 9.28e-36 136
Msa1306840 AT3G56960.2 35.196 179 116 0 67 245 73 251 5.76e-29 116
Msa1306840 AT3G56960.2 36.264 182 105 2 87 268 58 228 5.80e-28 113
Msa1306840 AT3G56960.2 33.514 185 123 0 89 273 72 256 1.14e-24 103
Msa1306840 AT3G56960.1 36.453 203 120 1 16 209 68 270 9.28e-36 136
Msa1306840 AT3G56960.1 35.196 179 116 0 67 245 73 251 5.76e-29 116
Msa1306840 AT3G56960.1 36.264 182 105 2 87 268 58 228 5.80e-28 113
Msa1306840 AT3G56960.1 33.514 185 123 0 89 273 72 256 1.14e-24 103
Msa1306840 AT1G21920.2 40.659 182 106 1 14 193 166 347 7.83e-35 129
Msa1306840 AT1G21920.2 36.413 184 117 0 53 236 161 344 2.66e-31 120
Msa1306840 AT1G21920.2 38.650 163 100 0 106 268 168 330 1.70e-28 112
Msa1306840 AT1G21920.2 31.658 199 136 0 84 282 169 367 2.68e-25 103
Msa1306840 AT1G77740.2 39.429 175 106 0 16 190 73 247 9.08e-35 133
Msa1306840 AT1G77740.2 37.647 170 106 0 67 236 78 247 2.80e-28 114
Msa1306840 AT1G77740.2 36.478 159 101 0 112 270 77 235 3.45e-27 111
Msa1306840 AT1G77740.2 33.333 171 114 0 89 259 77 247 5.35e-23 99.4
Msa1306840 AT1G77740.2 36.496 137 87 0 134 270 76 212 1.16e-21 95.1
Msa1306840 AT1G77740.1 39.429 175 106 0 16 190 73 247 9.08e-35 133
Msa1306840 AT1G77740.1 37.647 170 106 0 67 236 78 247 2.80e-28 114
Msa1306840 AT1G77740.1 36.478 159 101 0 112 270 77 235 3.45e-27 111
Msa1306840 AT1G77740.1 33.333 171 114 0 89 259 77 247 5.35e-23 99.4
Msa1306840 AT1G77740.1 36.496 137 87 0 134 270 76 212 1.16e-21 95.1
Msa1306840 AT1G77660.1 40.206 194 114 1 2 193 158 351 1.21e-34 130
Msa1306840 AT1G77660.1 37.222 180 113 0 57 236 169 348 2.14e-29 115
Msa1306840 AT1G77660.1 38.650 163 100 0 106 268 172 334 2.43e-26 107
Msa1306840 AT1G21920.1 40.659 182 106 1 14 193 166 347 1.50e-34 129
Msa1306840 AT1G21920.1 36.413 184 117 0 53 236 161 344 7.94e-31 119
Msa1306840 AT1G21920.1 38.650 163 100 0 106 268 168 330 5.26e-28 112
Msa1306840 AT1G21920.1 31.500 200 137 0 84 283 169 368 8.02e-25 103
Msa1306840 AT2G26420.1 41.463 164 96 0 14 177 47 210 5.96e-32 125
Msa1306840 AT2G26420.1 37.342 158 99 0 113 270 54 211 9.69e-26 107
Msa1306840 AT2G26420.1 36.957 184 114 1 67 248 54 237 1.60e-24 103
Msa1306840 AT2G26420.1 36.875 160 101 0 90 249 54 213 8.82e-23 98.6
Msa1306840 AT2G26420.2 41.463 164 96 0 14 177 47 210 6.98e-32 125
Msa1306840 AT2G26420.2 37.342 158 99 0 113 270 54 211 1.25e-25 106
Msa1306840 AT2G26420.2 36.957 184 114 1 67 248 54 237 2.05e-24 103
Msa1306840 AT2G26420.2 36.875 160 101 0 90 249 54 213 1.14e-22 98.2
Msa1306840 AT2G26420.3 41.463 164 96 0 14 177 47 210 6.98e-32 125
Msa1306840 AT2G26420.3 37.342 158 99 0 113 270 54 211 1.25e-25 106
Msa1306840 AT2G26420.3 36.957 184 114 1 67 248 54 237 2.05e-24 103
Msa1306840 AT2G26420.3 36.875 160 101 0 90 249 54 213 1.14e-22 98.2
Msa1306840 AT4G17080.1 40.000 175 105 0 19 193 256 430 8.91e-32 123
Msa1306840 AT4G17080.1 37.714 175 109 0 42 216 256 430 3.90e-29 116
Msa1306840 AT4G17080.1 38.012 171 106 0 99 269 244 414 1.63e-28 114
Msa1306840 AT4G17080.1 32.487 197 127 1 62 258 253 443 4.07e-28 113
Msa1306840 AT2G35170.1 39.766 171 103 0 23 193 229 399 5.68e-30 118
Msa1306840 AT2G35170.1 32.843 204 134 1 62 262 222 425 2.46e-27 110
Msa1306840 AT2G35170.1 38.824 170 104 0 47 216 230 399 4.54e-27 110
Msa1306840 AT1G75010.1 34.921 126 82 0 68 193 604 729 2.23e-11 64.7

Find 87 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACGTCTACACTGGAAAT+TGG 0.199973 8_4:+1791865 Msa1306840:CDS
GAAACGTCTACACTGGAAAT+TGG 0.199973 8_4:+1792141 Msa1306840:CDS
TACACTGGAAATTGGGAAAA+AGG 0.217123 8_4:+1792149 Msa1306840:CDS
GGGATGTCTACGCTGGAAAT+TGG 0.240613 8_4:+1792003 Msa1306840:CDS
TACACTGGAAATTGGGAAAA+AGG 0.296129 8_4:+1791873 Msa1306840:CDS
GAGATGTCTACACTGGAAAT+TGG 0.297839 8_4:+1792279 Msa1306840:CDS
TGACCAACAACCATCGAAAA+TGG 0.303459 8_4:-1791799 None:intergenic
TACGCTGGAAATTGGGAAAA+AGG 0.309774 8_4:+1792011 Msa1306840:CDS
AATTAAGCTTCAGATGATAA+TGG 0.335808 8_4:-1792444 None:intergenic
ATGGAAAAGGGATTATGAAT+TGG 0.347632 8_4:+1792042 Msa1306840:CDS
AATGGACTTTCGCATGGATA+TGG 0.353378 8_4:+1792098 Msa1306840:CDS
TACGAGGGCGATTGGGTTGA+TGG 0.368273 8_4:+1792356 Msa1306840:CDS
AATGGACATAAACATGGATA+TGG 0.369212 8_4:+1791960 Msa1306840:CDS
AGGGAAAGGGATTATGAATT+GGG 0.375715 8_4:+1791767 Msa1306840:CDS
GAGTTTATAGATTTGCAAAT+GGG 0.384860 8_4:+1791982 Msa1306840:CDS
CAGGGAAAGGGATTATGAAT+TGG 0.387625 8_4:+1791766 Msa1306840:CDS
TTCAAGGGTGAACTTCTTCA+TGG 0.393069 8_4:+1791678 Msa1306840:CDS
TTCGATGGTTGTTGGTCAAA+TGG 0.393393 8_4:+1791804 Msa1306840:CDS
AATGGACTTTCACATGGATA+TGG 0.393948 8_4:+1791822 Msa1306840:CDS
TGGAAAAGGGATTATGAATT+GGG 0.398832 8_4:+1792043 Msa1306840:CDS
ATTAAGCTTCAGATGATAAT+GGG 0.406796 8_4:-1792443 None:intergenic
TTCGATGGTTATTGGTCAAA+TGG 0.407614 8_4:+1791942 Msa1306840:CDS
TTCGATGGTTATTGGTCAAA+TGG 0.407614 8_4:+1792218 Msa1306840:CDS
TACGAGGGTGACTGGGTTGA+TGG 0.408545 8_4:+1791735 Msa1306840:CDS
AATAATAAAATGGATGGAAG+AGG 0.408648 8_4:+1792305 Msa1306840:CDS
GAACAATATACGAGGGTGAC+TGG 0.412789 8_4:+1791727 Msa1306840:CDS
ATGGAAAAGGGATTATGAAA+TGG 0.419433 8_4:+1791904 Msa1306840:CDS
TTCGATGGTTGCTGGTCAAA+TGG 0.420223 8_4:+1792080 Msa1306840:CDS
GGGATTATGAATTGGGCTAA+TGG 0.426829 8_4:+1792050 Msa1306840:CDS
AAGGGGAAAGGGATGGAAAA+GGG 0.430911 8_4:+1792168 Msa1306840:CDS
TGGGTTGATGGACAAATGAT+AGG 0.434531 8_4:+1792368 Msa1306840:CDS
GGAGTTTATAGATTTGCAAA+TGG 0.437498 8_4:+1791981 Msa1306840:CDS
AAAGGGGAAAGGGATGGAAA+AGG 0.442937 8_4:+1792167 Msa1306840:CDS
ATGGAAAAGGGATTATGAAA+TGG 0.443399 8_4:+1792180 Msa1306840:CDS
AAAGGAGAAAAGGATGGAAA+AGG 0.446263 8_4:+1792029 Msa1306840:CDS
AAACGTCTACACTGGAAATT+GGG 0.451480 8_4:+1791866 Msa1306840:CDS
AAACGTCTACACTGGAAATT+GGG 0.451480 8_4:+1792142 Msa1306840:CDS
AAGGAGAAAAGGATGGAAAA+GGG 0.451607 8_4:+1792030 Msa1306840:CDS
GGGATTATGAATTGGTCAAA+TGG 0.455729 8_4:+1792326 Msa1306840:CDS
GAACAATGTACGAGGGCGAT+TGG 0.457462 8_4:+1792348 Msa1306840:CDS
AAGGTGAAAGGCATGGAAAA+GGG 0.462403 8_4:+1791892 Msa1306840:CDS
GGATGTCTACGCTGGAAATT+GGG 0.465315 8_4:+1792004 Msa1306840:CDS
ATGGAAGAGGGATTATGAAT+TGG 0.469752 8_4:+1792318 Msa1306840:CDS
GGGATTATGAATTGGGGTAA+TGG 0.470324 8_4:+1791774 Msa1306840:CDS
AACAATGTACGAGGGCGATT+GGG 0.470740 8_4:+1792349 Msa1306840:CDS
TGTCTACATTGGTAAATTCA+AGG 0.474127 8_4:+1791662 Msa1306840:CDS
AAAGGTGAAAGGCATGGAAA+AGG 0.474168 8_4:+1791891 Msa1306840:CDS
GGAGTTTATAGATTTGCAAA+TGG 0.480472 8_4:+1792257 Msa1306840:CDS
TGGAAAAGGGATTATGAAAT+GGG 0.487859 8_4:+1792181 Msa1306840:CDS
TGGAAAAGGGATTATGAAAT+GGG 0.493424 8_4:+1791905 Msa1306840:CDS
GGAAAGTACACATGGACAAA+TGG 0.494048 8_4:+1791705 Msa1306840:CDS
GATGGAAAAGTGACAGGGAA+AGG 0.496612 8_4:+1791753 Msa1306840:CDS
GGAGTTTATAGATCTGCAAA+TGG 0.513797 8_4:+1791843 Msa1306840:CDS
GGAGTTTATAGATCTGCAAA+TGG 0.513797 8_4:+1792119 Msa1306840:CDS
TCAAATGGGGATGTCTACAT+TGG 0.518877 8_4:+1791651 Msa1306840:CDS
ATGCAAGTCATGGAGGATGA+TGG 0.528096 8_4:+1791475 Msa1306840:CDS
ATGGAAAAGTGACAGGGAAA+GGG 0.534561 8_4:+1791754 Msa1306840:CDS
TGGGTTGATGGAAAAGTGAC+AGG 0.540161 8_4:+1791747 Msa1306840:CDS
ATAATAAAATGGATGGAAGA+GGG 0.546218 8_4:+1792306 Msa1306840:CDS
GATGGACAAATGATAGGGAA+TGG 0.550634 8_4:+1792374 Msa1306840:CDS
AACAATATACGAGGGTGACT+GGG 0.562591 8_4:+1791728 Msa1306840:CDS
GGGTTGATGGACAAATGATA+GGG 0.565463 8_4:+1792369 Msa1306840:CDS
AGTTTATAGATTTGCAAATG+GGG 0.568661 8_4:+1791983 Msa1306840:CDS
GTCTACATTGGTAAATTCAA+GGG 0.570653 8_4:+1791663 Msa1306840:CDS
AATGGACAGAAACATGGCTA+TGG 0.574469 8_4:+1792236 Msa1306840:CDS
GGTGAACTTCTTCATGGCAT+CGG 0.576407 8_4:+1791684 Msa1306840:CDS
TGGTCAAATGGACTTTCACA+TGG 0.576790 8_4:+1791816 Msa1306840:CDS
GGGAATGGATTGATGATACC+AGG 0.577591 8_4:+1792389 Msa1306840:CDS
GAGTGAAAGAATGCAAGTCA+TGG 0.582412 8_4:+1791465 Msa1306840:CDS
GCAAATGGAAACGTCTACAC+TGG 0.588126 8_4:+1791858 Msa1306840:CDS
GCAAATGGAAACGTCTACAC+TGG 0.588126 8_4:+1792134 Msa1306840:CDS
GCAAATGGGGATGTCTACGC+TGG 0.596613 8_4:+1791996 Msa1306840:CDS
TGGTCAAATGGACAGAAACA+TGG 0.596729 8_4:+1792230 Msa1306840:CDS
TGGTCAAATGGACTTTCGCA+TGG 0.604154 8_4:+1792092 Msa1306840:CDS
TGGTCAAATGGACATAAACA+TGG 0.607218 8_4:+1791954 Msa1306840:CDS
GCAAATGGAGATGTCTACAC+TGG 0.608648 8_4:+1792272 Msa1306840:CDS
GGGATTATGAAATGGGCTAA+CGG 0.622522 8_4:+1791912 Msa1306840:CDS
GGGATTATGAAATGGGCTAA+CGG 0.622522 8_4:+1792188 Msa1306840:CDS
GGGAAAGGGATTATGAATTG+GGG 0.649116 8_4:+1791768 Msa1306840:CDS
AAGTCATGGAGGATGATGGA+AGG 0.670085 8_4:+1791479 Msa1306840:CDS
GTCAAATGGAACAATGTACG+AGG 0.679412 8_4:+1792340 Msa1306840:CDS
ATGGCATCGGAAAGTACACA+TGG 0.681327 8_4:+1791697 Msa1306840:CDS
GACAAATGGAACAATATACG+AGG 0.707016 8_4:+1791719 Msa1306840:CDS
TCAAATGGAACAATGTACGA+GGG 0.718322 8_4:+1792341 Msa1306840:CDS
ACAAATGGAACAATATACGA+GGG 0.718645 8_4:+1791720 Msa1306840:CDS
GGGTTGATGGAAAAGTGACA+GGG 0.720292 8_4:+1791748 Msa1306840:CDS
TGAAAGAATGCAAGTCATGG+AGG 0.727592 8_4:+1791468 Msa1306840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGGAAAAATAATAAAA+TGG + chr8_4:1792295-1792314 Msa1306840:CDS 10.0%
!! AAATTGGAAAAATAATAAAA+TGG + chr8_4:1792295-1792314 Msa1306840:CDS 10.0%
!! GAAATCATAATCATAATAAA+TGG - chr8_4:1791591-1791610 None:intergenic 15.0%
!! GAAATCATAATCATAATAAA+TGG - chr8_4:1791591-1791610 None:intergenic 15.0%
!! TGGAAAAATAATAAAATGGA+TGG + chr8_4:1792299-1792318 Msa1306840:CDS 20.0%
!! TGGAAAAATAATAAAATGGA+TGG + chr8_4:1792299-1792318 Msa1306840:CDS 20.0%
!! AAAGAGAAGTTCTTTTCAAA+TGG + chr8_4:1791636-1791655 Msa1306840:CDS 25.0%
!! AAGAGAAGTTCTTTTCAAAT+GGG + chr8_4:1791637-1791656 Msa1306840:CDS 25.0%
! GAGTTTATAGATTTGCAAAT+GGG + chr8_4:1791982-1792001 Msa1306840:CDS 25.0%
! AGTTTATAGATTTGCAAATG+GGG + chr8_4:1791983-1792002 Msa1306840:CDS 25.0%
! AATAATAAAATGGATGGAAG+AGG + chr8_4:1792305-1792324 Msa1306840:CDS 25.0%
! ATAATAAAATGGATGGAAGA+GGG + chr8_4:1792306-1792325 Msa1306840:CDS 25.0%
!! AAAGAGAAGTTCTTTTCAAA+TGG + chr8_4:1791636-1791655 Msa1306840:CDS 25.0%
!! AAGAGAAGTTCTTTTCAAAT+GGG + chr8_4:1791637-1791656 Msa1306840:CDS 25.0%
! GAGTTTATAGATTTGCAAAT+GGG + chr8_4:1791982-1792001 Msa1306840:CDS 25.0%
! AGTTTATAGATTTGCAAATG+GGG + chr8_4:1791983-1792002 Msa1306840:CDS 25.0%
! AATAATAAAATGGATGGAAG+AGG + chr8_4:1792305-1792324 Msa1306840:CDS 25.0%
! ATAATAAAATGGATGGAAGA+GGG + chr8_4:1792306-1792325 Msa1306840:CDS 25.0%
! AGAGAAGTTCTTTTCAAATG+GGG + chr8_4:1791638-1791657 Msa1306840:CDS 30.0%
TGTCTACATTGGTAAATTCA+AGG + chr8_4:1791662-1791681 Msa1306840:CDS 30.0%
GTCTACATTGGTAAATTCAA+GGG + chr8_4:1791663-1791682 Msa1306840:CDS 30.0%
ACAAATGGAACAATATACGA+GGG + chr8_4:1791720-1791739 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr8_4:1791904-1791923 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr8_4:1791905-1791924 Msa1306840:CDS 30.0%
AATGGACATAAACATGGATA+TGG + chr8_4:1791960-1791979 Msa1306840:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr8_4:1791981-1792000 Msa1306840:CDS 30.0%
AAATTGGGAAAAAGGAGAAA+AGG + chr8_4:1792019-1792038 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAT+TGG + chr8_4:1792042-1792061 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAATT+GGG + chr8_4:1792043-1792062 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr8_4:1791904-1791923 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr8_4:1791905-1791924 Msa1306840:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr8_4:1791981-1792000 Msa1306840:CDS 30.0%
AAAAATGTACATAGAAAGCC+TGG - chr8_4:1792410-1792429 None:intergenic 30.0%
! AGAGAAGTTCTTTTCAAATG+GGG + chr8_4:1791638-1791657 Msa1306840:CDS 30.0%
TGTCTACATTGGTAAATTCA+AGG + chr8_4:1791662-1791681 Msa1306840:CDS 30.0%
GTCTACATTGGTAAATTCAA+GGG + chr8_4:1791663-1791682 Msa1306840:CDS 30.0%
ACAAATGGAACAATATACGA+GGG + chr8_4:1791720-1791739 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr8_4:1791904-1791923 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr8_4:1791905-1791924 Msa1306840:CDS 30.0%
AATGGACATAAACATGGATA+TGG + chr8_4:1791960-1791979 Msa1306840:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr8_4:1791981-1792000 Msa1306840:CDS 30.0%
AAATTGGGAAAAAGGAGAAA+AGG + chr8_4:1792019-1792038 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAT+TGG + chr8_4:1792042-1792061 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAATT+GGG + chr8_4:1792043-1792062 Msa1306840:CDS 30.0%
ATGGAAAAGGGATTATGAAA+TGG + chr8_4:1791904-1791923 Msa1306840:CDS 30.0%
TGGAAAAGGGATTATGAAAT+GGG + chr8_4:1791905-1791924 Msa1306840:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG + chr8_4:1791981-1792000 Msa1306840:CDS 30.0%
AAAAATGTACATAGAAAGCC+TGG - chr8_4:1792410-1792429 None:intergenic 30.0%
TGAATTAGATAGAGTAGCTG+TGG - chr8_4:1791520-1791539 None:intergenic 35.0%
GACAAATGGAACAATATACG+AGG + chr8_4:1791719-1791738 Msa1306840:CDS 35.0%
AGGGAAAGGGATTATGAATT+GGG + chr8_4:1791767-1791786 Msa1306840:CDS 35.0%
! AATGGACTTTCACATGGATA+TGG + chr8_4:1791822-1791841 Msa1306840:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr8_4:1791843-1791862 Msa1306840:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr8_4:1791866-1791885 Msa1306840:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr8_4:1791873-1791892 Msa1306840:CDS 35.0%
GAAATTGGGAAAAAGGTGAA+AGG + chr8_4:1791880-1791899 Msa1306840:CDS 35.0%
! GTGATGTTTTCGATGGTTAT+TGG + chr8_4:1791934-1791953 Msa1306840:CDS 35.0%
TTCGATGGTTATTGGTCAAA+TGG + chr8_4:1791942-1791961 Msa1306840:CDS 35.0%
TGGTCAAATGGACATAAACA+TGG + chr8_4:1791954-1791973 Msa1306840:CDS 35.0%
AAAGGAGAAAAGGATGGAAA+AGG + chr8_4:1792029-1792048 Msa1306840:CDS 35.0%
AAGGAGAAAAGGATGGAAAA+GGG + chr8_4:1792030-1792049 Msa1306840:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr8_4:1791843-1791862 Msa1306840:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr8_4:1791866-1791885 Msa1306840:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr8_4:1791873-1791892 Msa1306840:CDS 35.0%
ACACTGGAAATTGGGAAAAA+GGG + chr8_4:1791874-1791893 Msa1306840:CDS 35.0%
AAATTGGGAAAAAGGGGAAA+GGG + chr8_4:1792157-1792176 Msa1306840:CDS 35.0%
! GTGATGTTTTCGATGGTTAT+TGG + chr8_4:1791934-1791953 Msa1306840:CDS 35.0%
TTCGATGGTTATTGGTCAAA+TGG + chr8_4:1791942-1791961 Msa1306840:CDS 35.0%
ATGGAAGAGGGATTATGAAT+TGG + chr8_4:1792318-1792337 Msa1306840:CDS 35.0%
GGGATTATGAATTGGTCAAA+TGG + chr8_4:1792326-1792345 Msa1306840:CDS 35.0%
TCAAATGGAACAATGTACGA+GGG + chr8_4:1792341-1792360 Msa1306840:CDS 35.0%
TGAATTAGATAGAGTAGCTG+TGG - chr8_4:1791520-1791539 None:intergenic 35.0%
GACAAATGGAACAATATACG+AGG + chr8_4:1791719-1791738 Msa1306840:CDS 35.0%
AGGGAAAGGGATTATGAATT+GGG + chr8_4:1791767-1791786 Msa1306840:CDS 35.0%
! AATGGACTTTCACATGGATA+TGG + chr8_4:1791822-1791841 Msa1306840:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr8_4:1791843-1791862 Msa1306840:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr8_4:1791866-1791885 Msa1306840:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr8_4:1791873-1791892 Msa1306840:CDS 35.0%
GAAATTGGGAAAAAGGTGAA+AGG + chr8_4:1791880-1791899 Msa1306840:CDS 35.0%
! GTGATGTTTTCGATGGTTAT+TGG + chr8_4:1791934-1791953 Msa1306840:CDS 35.0%
TTCGATGGTTATTGGTCAAA+TGG + chr8_4:1791942-1791961 Msa1306840:CDS 35.0%
TGGTCAAATGGACATAAACA+TGG + chr8_4:1791954-1791973 Msa1306840:CDS 35.0%
AAAGGAGAAAAGGATGGAAA+AGG + chr8_4:1792029-1792048 Msa1306840:CDS 35.0%
AAGGAGAAAAGGATGGAAAA+GGG + chr8_4:1792030-1792049 Msa1306840:CDS 35.0%
GGAGTTTATAGATCTGCAAA+TGG + chr8_4:1791843-1791862 Msa1306840:CDS 35.0%
AAACGTCTACACTGGAAATT+GGG + chr8_4:1791866-1791885 Msa1306840:CDS 35.0%
TACACTGGAAATTGGGAAAA+AGG + chr8_4:1791873-1791892 Msa1306840:CDS 35.0%
ACACTGGAAATTGGGAAAAA+GGG + chr8_4:1791874-1791893 Msa1306840:CDS 35.0%
AAATTGGGAAAAAGGGGAAA+GGG + chr8_4:1792157-1792176 Msa1306840:CDS 35.0%
! GTGATGTTTTCGATGGTTAT+TGG + chr8_4:1791934-1791953 Msa1306840:CDS 35.0%
TTCGATGGTTATTGGTCAAA+TGG + chr8_4:1791942-1791961 Msa1306840:CDS 35.0%
ATGGAAGAGGGATTATGAAT+TGG + chr8_4:1792318-1792337 Msa1306840:CDS 35.0%
GGGATTATGAATTGGTCAAA+TGG + chr8_4:1792326-1792345 Msa1306840:CDS 35.0%
TCAAATGGAACAATGTACGA+GGG + chr8_4:1792341-1792360 Msa1306840:CDS 35.0%
GAGTGAAAGAATGCAAGTCA+TGG + chr8_4:1791465-1791484 Msa1306840:CDS 40.0%
TGAAAGAATGCAAGTCATGG+AGG + chr8_4:1791468-1791487 Msa1306840:CDS 40.0%
TCAAATGGGGATGTCTACAT+TGG + chr8_4:1791651-1791670 Msa1306840:CDS 40.0%
TTCAAGGGTGAACTTCTTCA+TGG + chr8_4:1791678-1791697 Msa1306840:CDS 40.0%
! GGAAAGTACACATGGACAAA+TGG + chr8_4:1791705-1791724 Msa1306840:CDS 40.0%
AACAATATACGAGGGTGACT+GGG + chr8_4:1791728-1791747 Msa1306840:CDS 40.0%
ATGGAAAAGTGACAGGGAAA+GGG + chr8_4:1791754-1791773 Msa1306840:CDS 40.0%
CAGGGAAAGGGATTATGAAT+TGG + chr8_4:1791766-1791785 Msa1306840:CDS 40.0%
GGGAAAGGGATTATGAATTG+GGG + chr8_4:1791768-1791787 Msa1306840:CDS 40.0%
GGGATTATGAATTGGGGTAA+TGG + chr8_4:1791774-1791793 Msa1306840:CDS 40.0%
TGACCAACAACCATCGAAAA+TGG - chr8_4:1791802-1791821 None:intergenic 40.0%
TTCGATGGTTGTTGGTCAAA+TGG + chr8_4:1791804-1791823 Msa1306840:CDS 40.0%
! TGGTCAAATGGACTTTCACA+TGG + chr8_4:1791816-1791835 Msa1306840:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr8_4:1791865-1791884 Msa1306840:CDS 40.0%
! AAAGGTGAAAGGCATGGAAA+AGG + chr8_4:1791891-1791910 Msa1306840:CDS 40.0%
! AAGGTGAAAGGCATGGAAAA+GGG + chr8_4:1791892-1791911 Msa1306840:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr8_4:1791912-1791931 Msa1306840:CDS 40.0%
TACGCTGGAAATTGGGAAAA+AGG + chr8_4:1792011-1792030 Msa1306840:CDS 40.0%
TGGGAAAAAGGAGAAAAGGA+TGG + chr8_4:1792023-1792042 Msa1306840:CDS 40.0%
GGGATTATGAATTGGGCTAA+TGG + chr8_4:1792050-1792069 Msa1306840:CDS 40.0%
!!! GCTAATGGTGCTATTTTCGA+TGG + chr8_4:1792065-1792084 Msa1306840:CDS 40.0%
! AATGGACTTTCGCATGGATA+TGG + chr8_4:1792098-1792117 Msa1306840:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr8_4:1791865-1791884 Msa1306840:CDS 40.0%
CACTGGAAATTGGGAAAAAG+GGG + chr8_4:1791875-1791894 Msa1306840:CDS 40.0%
GAAATTGGGAAAAAGGGGAA+AGG + chr8_4:1792156-1792175 Msa1306840:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr8_4:1791912-1791931 Msa1306840:CDS 40.0%
TGGTCAAATGGACAGAAACA+TGG + chr8_4:1792230-1792249 Msa1306840:CDS 40.0%
AATGGACAGAAACATGGCTA+TGG + chr8_4:1792236-1792255 Msa1306840:CDS 40.0%
GAGATGTCTACACTGGAAAT+TGG + chr8_4:1792279-1792298 Msa1306840:CDS 40.0%
GTCAAATGGAACAATGTACG+AGG + chr8_4:1792340-1792359 Msa1306840:CDS 40.0%
!! TGGGTTGATGGACAAATGAT+AGG + chr8_4:1792368-1792387 Msa1306840:CDS 40.0%
!! GGGTTGATGGACAAATGATA+GGG + chr8_4:1792369-1792388 Msa1306840:CDS 40.0%
GATGGACAAATGATAGGGAA+TGG + chr8_4:1792374-1792393 Msa1306840:CDS 40.0%
GAGTGAAAGAATGCAAGTCA+TGG + chr8_4:1791465-1791484 Msa1306840:CDS 40.0%
TGAAAGAATGCAAGTCATGG+AGG + chr8_4:1791468-1791487 Msa1306840:CDS 40.0%
TCAAATGGGGATGTCTACAT+TGG + chr8_4:1791651-1791670 Msa1306840:CDS 40.0%
TTCAAGGGTGAACTTCTTCA+TGG + chr8_4:1791678-1791697 Msa1306840:CDS 40.0%
! GGAAAGTACACATGGACAAA+TGG + chr8_4:1791705-1791724 Msa1306840:CDS 40.0%
AACAATATACGAGGGTGACT+GGG + chr8_4:1791728-1791747 Msa1306840:CDS 40.0%
ATGGAAAAGTGACAGGGAAA+GGG + chr8_4:1791754-1791773 Msa1306840:CDS 40.0%
CAGGGAAAGGGATTATGAAT+TGG + chr8_4:1791766-1791785 Msa1306840:CDS 40.0%
GGGAAAGGGATTATGAATTG+GGG + chr8_4:1791768-1791787 Msa1306840:CDS 40.0%
GGGATTATGAATTGGGGTAA+TGG + chr8_4:1791774-1791793 Msa1306840:CDS 40.0%
TGACCAACAACCATCGAAAA+TGG - chr8_4:1791802-1791821 None:intergenic 40.0%
TTCGATGGTTGTTGGTCAAA+TGG + chr8_4:1791804-1791823 Msa1306840:CDS 40.0%
! TGGTCAAATGGACTTTCACA+TGG + chr8_4:1791816-1791835 Msa1306840:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr8_4:1791865-1791884 Msa1306840:CDS 40.0%
! AAAGGTGAAAGGCATGGAAA+AGG + chr8_4:1791891-1791910 Msa1306840:CDS 40.0%
! AAGGTGAAAGGCATGGAAAA+GGG + chr8_4:1791892-1791911 Msa1306840:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr8_4:1791912-1791931 Msa1306840:CDS 40.0%
TACGCTGGAAATTGGGAAAA+AGG + chr8_4:1792011-1792030 Msa1306840:CDS 40.0%
TGGGAAAAAGGAGAAAAGGA+TGG + chr8_4:1792023-1792042 Msa1306840:CDS 40.0%
GGGATTATGAATTGGGCTAA+TGG + chr8_4:1792050-1792069 Msa1306840:CDS 40.0%
!!! GCTAATGGTGCTATTTTCGA+TGG + chr8_4:1792065-1792084 Msa1306840:CDS 40.0%
! AATGGACTTTCGCATGGATA+TGG + chr8_4:1792098-1792117 Msa1306840:CDS 40.0%
GAAACGTCTACACTGGAAAT+TGG + chr8_4:1791865-1791884 Msa1306840:CDS 40.0%
CACTGGAAATTGGGAAAAAG+GGG + chr8_4:1791875-1791894 Msa1306840:CDS 40.0%
GAAATTGGGAAAAAGGGGAA+AGG + chr8_4:1792156-1792175 Msa1306840:CDS 40.0%
!! GGGATTATGAAATGGGCTAA+CGG + chr8_4:1791912-1791931 Msa1306840:CDS 40.0%
TGGTCAAATGGACAGAAACA+TGG + chr8_4:1792230-1792249 Msa1306840:CDS 40.0%
AATGGACAGAAACATGGCTA+TGG + chr8_4:1792236-1792255 Msa1306840:CDS 40.0%
GAGATGTCTACACTGGAAAT+TGG + chr8_4:1792279-1792298 Msa1306840:CDS 40.0%
GTCAAATGGAACAATGTACG+AGG + chr8_4:1792340-1792359 Msa1306840:CDS 40.0%
!! TGGGTTGATGGACAAATGAT+AGG + chr8_4:1792368-1792387 Msa1306840:CDS 40.0%
!! GGGTTGATGGACAAATGATA+GGG + chr8_4:1792369-1792388 Msa1306840:CDS 40.0%
GATGGACAAATGATAGGGAA+TGG + chr8_4:1792374-1792393 Msa1306840:CDS 40.0%
ATGCAAGTCATGGAGGATGA+TGG + chr8_4:1791475-1791494 Msa1306840:CDS 45.0%
!! AAGTCATGGAGGATGATGGA+AGG + chr8_4:1791479-1791498 Msa1306840:CDS 45.0%
GGTGAACTTCTTCATGGCAT+CGG + chr8_4:1791684-1791703 Msa1306840:CDS 45.0%
! ATGGCATCGGAAAGTACACA+TGG + chr8_4:1791697-1791716 Msa1306840:CDS 45.0%
GAACAATATACGAGGGTGAC+TGG + chr8_4:1791727-1791746 Msa1306840:CDS 45.0%
!! TGGGTTGATGGAAAAGTGAC+AGG + chr8_4:1791747-1791766 Msa1306840:CDS 45.0%
!! GGGTTGATGGAAAAGTGACA+GGG + chr8_4:1791748-1791767 Msa1306840:CDS 45.0%
GATGGAAAAGTGACAGGGAA+AGG + chr8_4:1791753-1791772 Msa1306840:CDS 45.0%
!!! GGTAATGGTGCCATTTTCGA+TGG + chr8_4:1791789-1791808 Msa1306840:CDS 45.0%
!!! GTGCCATTTTCGATGGTTGT+TGG + chr8_4:1791796-1791815 Msa1306840:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr8_4:1791858-1791877 Msa1306840:CDS 45.0%
TGGGAAAAAGGTGAAAGGCA+TGG + chr8_4:1791885-1791904 Msa1306840:CDS 45.0%
! GCTAACGGTGATGTTTTCGA+TGG + chr8_4:1791927-1791946 Msa1306840:CDS 45.0%
GGATGTCTACGCTGGAAATT+GGG + chr8_4:1792004-1792023 Msa1306840:CDS 45.0%
!!! GTGCTATTTTCGATGGTTGC+TGG + chr8_4:1792072-1792091 Msa1306840:CDS 45.0%
TTCGATGGTTGCTGGTCAAA+TGG + chr8_4:1792080-1792099 Msa1306840:CDS 45.0%
! TGGTCAAATGGACTTTCGCA+TGG + chr8_4:1792092-1792111 Msa1306840:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr8_4:1791858-1791877 Msa1306840:CDS 45.0%
AAAGGGGAAAGGGATGGAAA+AGG + chr8_4:1792167-1792186 Msa1306840:CDS 45.0%
AAGGGGAAAGGGATGGAAAA+GGG + chr8_4:1792168-1792187 Msa1306840:CDS 45.0%
! GCTAACGGTGATGTTTTCGA+TGG + chr8_4:1791927-1791946 Msa1306840:CDS 45.0%
GCAAATGGAGATGTCTACAC+TGG + chr8_4:1792272-1792291 Msa1306840:CDS 45.0%
AACAATGTACGAGGGCGATT+GGG + chr8_4:1792349-1792368 Msa1306840:CDS 45.0%
!! GGGAATGGATTGATGATACC+AGG + chr8_4:1792389-1792408 Msa1306840:CDS 45.0%
ATGCAAGTCATGGAGGATGA+TGG + chr8_4:1791475-1791494 Msa1306840:CDS 45.0%
!! AAGTCATGGAGGATGATGGA+AGG + chr8_4:1791479-1791498 Msa1306840:CDS 45.0%
GGTGAACTTCTTCATGGCAT+CGG + chr8_4:1791684-1791703 Msa1306840:CDS 45.0%
! ATGGCATCGGAAAGTACACA+TGG + chr8_4:1791697-1791716 Msa1306840:CDS 45.0%
GAACAATATACGAGGGTGAC+TGG + chr8_4:1791727-1791746 Msa1306840:CDS 45.0%
!! TGGGTTGATGGAAAAGTGAC+AGG + chr8_4:1791747-1791766 Msa1306840:CDS 45.0%
!! GGGTTGATGGAAAAGTGACA+GGG + chr8_4:1791748-1791767 Msa1306840:CDS 45.0%
GATGGAAAAGTGACAGGGAA+AGG + chr8_4:1791753-1791772 Msa1306840:CDS 45.0%
!!! GGTAATGGTGCCATTTTCGA+TGG + chr8_4:1791789-1791808 Msa1306840:CDS 45.0%
!!! GTGCCATTTTCGATGGTTGT+TGG + chr8_4:1791796-1791815 Msa1306840:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr8_4:1791858-1791877 Msa1306840:CDS 45.0%
TGGGAAAAAGGTGAAAGGCA+TGG + chr8_4:1791885-1791904 Msa1306840:CDS 45.0%
! GCTAACGGTGATGTTTTCGA+TGG + chr8_4:1791927-1791946 Msa1306840:CDS 45.0%
GGATGTCTACGCTGGAAATT+GGG + chr8_4:1792004-1792023 Msa1306840:CDS 45.0%
!!! GTGCTATTTTCGATGGTTGC+TGG + chr8_4:1792072-1792091 Msa1306840:CDS 45.0%
TTCGATGGTTGCTGGTCAAA+TGG + chr8_4:1792080-1792099 Msa1306840:CDS 45.0%
! TGGTCAAATGGACTTTCGCA+TGG + chr8_4:1792092-1792111 Msa1306840:CDS 45.0%
GCAAATGGAAACGTCTACAC+TGG + chr8_4:1791858-1791877 Msa1306840:CDS 45.0%
AAAGGGGAAAGGGATGGAAA+AGG + chr8_4:1792167-1792186 Msa1306840:CDS 45.0%
AAGGGGAAAGGGATGGAAAA+GGG + chr8_4:1792168-1792187 Msa1306840:CDS 45.0%
! GCTAACGGTGATGTTTTCGA+TGG + chr8_4:1791927-1791946 Msa1306840:CDS 45.0%
GCAAATGGAGATGTCTACAC+TGG + chr8_4:1792272-1792291 Msa1306840:CDS 45.0%
AACAATGTACGAGGGCGATT+GGG + chr8_4:1792349-1792368 Msa1306840:CDS 45.0%
!! GGGAATGGATTGATGATACC+AGG + chr8_4:1792389-1792408 Msa1306840:CDS 45.0%
GGGATGTCTACGCTGGAAAT+TGG + chr8_4:1792003-1792022 Msa1306840:CDS 50.0%
TGGGAAAAAGGGGAAAGGGA+TGG + chr8_4:1792161-1792180 Msa1306840:CDS 50.0%
GAACAATGTACGAGGGCGAT+TGG + chr8_4:1792348-1792367 Msa1306840:CDS 50.0%
GGGATGTCTACGCTGGAAAT+TGG + chr8_4:1792003-1792022 Msa1306840:CDS 50.0%
TGGGAAAAAGGGGAAAGGGA+TGG + chr8_4:1792161-1792180 Msa1306840:CDS 50.0%
GAACAATGTACGAGGGCGAT+TGG + chr8_4:1792348-1792367 Msa1306840:CDS 50.0%
! TACGAGGGTGACTGGGTTGA+TGG + chr8_4:1791735-1791754 Msa1306840:CDS 55.0%
GCAAATGGGGATGTCTACGC+TGG + chr8_4:1791996-1792015 Msa1306840:CDS 55.0%
!! TACGAGGGCGATTGGGTTGA+TGG + chr8_4:1792356-1792375 Msa1306840:CDS 55.0%
! TACGAGGGTGACTGGGTTGA+TGG + chr8_4:1791735-1791754 Msa1306840:CDS 55.0%
GCAAATGGGGATGTCTACGC+TGG + chr8_4:1791996-1792015 Msa1306840:CDS 55.0%
!! TACGAGGGCGATTGGGTTGA+TGG + chr8_4:1792356-1792375 Msa1306840:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1791463 1792457 1791463 ID=Msa1306840;Name=Msa1306840
chr8_4 mRNA 1791463 1792457 1791463 ID=Msa1306840-mRNA-1;Parent=Msa1306840;Name=Msa1306840-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|287
chr8_4 exon 1791463 1791500 1791463 ID=Msa1306840-mRNA-1:exon:631;Parent=Msa1306840-mRNA-1
chr8_4 exon 1791632 1792457 1791632 ID=Msa1306840-mRNA-1:exon:632;Parent=Msa1306840-mRNA-1
chr8_4 CDS 1791463 1791500 1791463 ID=Msa1306840-mRNA-1:cds;Parent=Msa1306840-mRNA-1
chr8_4 CDS 1791632 1792457 1791632 ID=Msa1306840-mRNA-1:cds;Parent=Msa1306840-mRNA-1
Gene Sequence

>Msa1306840

ATGAGTGAAAGAATGCAAGTCATGGAGGATGATGGAAGTGTTAAAGAGAAGTTCTTTTCAAATGGGGATGTCTACATTGGTAAATTCAAGGGTGAACTTCTTCATGGCATCGGAAAGTACACATGGACAAATGGAACAATATACGAGGGTGACTGGGTTGATGGAAAAGTGACAGGGAAAGGGATTATGAATTGGGGTAATGGTGCCATTTTCGATGGTTGTTGGTCAAATGGACTTTCACATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGTGAAAGGCATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCGATGGTTATTGGTCAAATGGACATAAACATGGATATGGAGTTTATAGATTTGCAAATGGGGATGTCTACGCTGGAAATTGGGAAAAAGGAGAAAAGGATGGAAAAGGGATTATGAATTGGGCTAATGGTGCTATTTTCGATGGTTGCTGGTCAAATGGACTTTCGCATGGATATGGAGTTTATAGATCTGCAAATGGAAACGTCTACACTGGAAATTGGGAAAAAGGGGAAAGGGATGGAAAAGGGATTATGAAATGGGCTAACGGTGATGTTTTCGATGGTTATTGGTCAAATGGACAGAAACATGGCTATGGAGTTTATAGATTTGCAAATGGAGATGTCTACACTGGAAATTGGAAAAATAATAAAATGGATGGAAGAGGGATTATGAATTGGTCAAATGGAACAATGTACGAGGGCGATTGGGTTGATGGACAAATGATAGGGAATGGATTGATGATACCAGGCTTTCTATGTACATTTTTGAAGACTATCAGACCCATTATCATCTGA
Protein sequence

>Msa1306840

MSERMQVMEDDGSVKEKFFSNGDVYIGKFKGELLHGIGKYTWTNGTIYEGDWVDGKVTGKGIMNWGNGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERHGKGIMKWANGDVFDGYWSNGHKHGYGVYRFANGDVYAGNWEKGEKDGKGIMNWANGAIFDGCWSNGLSHGYGVYRSANGNVYTGNWEKGERDGKGIMKWANGDVFDGYWSNGQKHGYGVYRFANGDVYTGNWKNNKMDGRGIMNWSNGTMYEGDWVDGQMIGNGLMIPGFLCTFLKTIRPIII*