AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711100 MtrunA17_Chr5g0393791 93.588 655 38 2 3 654 4 657 0.0 1242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711100 AT2G14680.3 50.157 636 295 6 12 642 8 626 0.0 566
Msa0711100 AT2G14680.1 50.157 636 295 6 12 642 8 626 0.0 566
Msa0711100 AT2G14680.2 49.088 658 292 8 12 642 8 649 0.0 557
Msa0711100 AT2G14680.7 50.772 518 241 5 12 524 8 516 1.03e-156 464
Msa0711100 AT2G14680.5 50.772 518 241 5 12 524 8 516 1.03e-156 464
Msa0711100 AT2G14680.4 49.444 540 238 7 12 524 8 539 1.08e-152 454
Msa0711100 AT2G14680.6 53.864 440 200 1 12 448 8 447 3.56e-145 430
Msa0711100 AT2G14680.8 45.941 505 252 6 141 642 2 488 5.08e-135 405

Find 132 sgRNAs with CRISPR-Local

Find 572 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTCCCTTCATTATT+TGG 0.150983 5_1:+2957210 None:intergenic
TGGTATCGTCACATTCTTTC+TGG 0.151805 5_1:+2960815 None:intergenic
TTCATCAATCACATTGATTA+TGG 0.178551 5_1:+2960073 None:intergenic
ACTTCGGAAGGTACAGTTTC+TGG 0.183709 5_1:-2955705 Msa0711100:CDS
TCTCTTAGATGGACCAAATT+TGG 0.191395 5_1:+2960020 None:intergenic
CTCTTTCTTCGTCTCTTAGA+TGG 0.229424 5_1:+2960009 None:intergenic
GAAGAAGAGAATCAATTTAA+TGG 0.236342 5_1:-2960300 Msa0711100:CDS
CAACTCAACTTTCACGTTCT+TGG 0.242212 5_1:-2955190 Msa0711100:three_prime_UTR
TAATTGAACGAATTGGAAAT+TGG 0.258619 5_1:+2963737 None:intergenic
CTTCATTGATAGCACCATTA+AGG 0.261072 5_1:+2955670 None:intergenic
TCATCATCATGAATCGTTAT+TGG 0.280158 5_1:-2963638 Msa0711100:CDS
TGAGAATATTGAGCCAAATT+TGG 0.288586 5_1:-2960033 Msa0711100:CDS
AATTTCCAATTCGTTCAATT+AGG 0.301060 5_1:-2963735 Msa0711100:five_prime_UTR
TGTTAAATGTACATGCCTTT+TGG 0.315765 5_1:-2960785 Msa0711100:CDS
TATTGTGTTAATCTTTGATA+TGG 0.331925 5_1:-2963683 Msa0711100:intron
ACTTCAAAAGAACTTGTTAC+AGG 0.339806 5_1:-2958926 Msa0711100:intron
GCAAGAAGAAAGACATCTAT+TGG 0.342788 5_1:-2958989 Msa0711100:CDS
GCAGGAACATCAATTACTTC+TGG 0.343090 5_1:-2958224 Msa0711100:CDS
GGTGTTTCAGAAGTCCTTAA+TGG 0.343534 5_1:-2955684 Msa0711100:CDS
AAATCTTACAATGTATTTAG+AGG 0.353616 5_1:+2960723 None:intergenic
ATAGGCTTCGCCTCTCTCTT+TGG 0.354087 5_1:-2956917 Msa0711100:CDS
ATTTAACTTCGTCAATTCAT+AGG 0.358490 5_1:-2956935 Msa0711100:CDS
AGTTCGATGAAGTAAAATTA+AGG 0.363787 5_1:-2955421 Msa0711100:exon
CGTTACTCCTTACAGAATAC+TGG 0.364686 5_1:-2959260 Msa0711100:intron
CAAAACCTAATTGAACGAAT+TGG 0.372786 5_1:+2963730 None:intergenic
GTCTCAACTGACCAACTAAT+AGG 0.378600 5_1:+2955612 None:intergenic
ATTGATTATGGATTTAATAG+TGG 0.381058 5_1:+2960085 None:intergenic
TGGATGACTCTGAGGAGTTA+TGG 0.381091 5_1:-2960765 Msa0711100:CDS
CTCGCTGCACCGCATTAATC+AGG 0.391497 5_1:-2955398 Msa0711100:three_prime_UTR
ATGGAAGCCACTACGGTTCC+TGG 0.392938 5_1:-2955450 Msa0711100:CDS
TTAATAAGTTCTTTCAGATC+AGG 0.393271 5_1:-2960846 Msa0711100:CDS
GGTGAAAGCTCTAATGGAAT+TGG 0.400555 5_1:-2958257 Msa0711100:CDS
AATCCACACTGCTGGATCTC+TGG 0.402816 5_1:+2957184 None:intergenic
TCTACAAGACCAACTTTCTC+AGG 0.404211 5_1:-2963339 Msa0711100:CDS
GTTCTTCAGTCTTTATTTGA+AGG 0.406546 5_1:+2958947 None:intergenic
TGAAAAGGTGAAAGCTCTAA+TGG 0.407201 5_1:-2958263 Msa0711100:CDS
GGTCAAGGAGTCTTTGACTT+CGG 0.431264 5_1:-2955721 Msa0711100:CDS
TTCTGCTGCCGGGTTTGAAA+TGG 0.432606 5_1:-2955511 Msa0711100:CDS
AGCAATGGCATTGCATGAAA+AGG 0.433720 5_1:-2959183 Msa0711100:intron
GGTATCGTCACATTCTTTCT+GGG 0.435822 5_1:+2960816 None:intergenic
GAATACTGGTCTTGTCTCAT+TGG 0.436292 5_1:-2959246 Msa0711100:CDS
GCAGCTCCTTACCTATTAGT+TGG 0.439726 5_1:-2955623 Msa0711100:CDS
ACTGTCTTCAAAGTAAACTT+AGG 0.442891 5_1:-2960460 Msa0711100:CDS
AGCTACTGCGTTTGCTGAAA+GGG 0.447316 5_1:-2963219 Msa0711100:CDS
ATTGGCTCGTATCCGACAAC+TGG 0.448621 5_1:-2963620 Msa0711100:CDS
TTCGATATTCTTTGAATGCT+CGG 0.449192 5_1:+2963277 None:intergenic
ATAGACACTGTTTCTGCTGC+CGG 0.449437 5_1:-2955522 Msa0711100:CDS
CTCAACTTTCACGTTCTTGG+AGG 0.451643 5_1:-2955187 Msa0711100:three_prime_UTR
AAATACATGGCTTCCTCAAA+AGG 0.453150 5_1:-2963056 Msa0711100:intron
GAGTGCATTAGAAGAGCAGC+TGG 0.463535 5_1:-2960504 Msa0711100:CDS
GACAGTAGTCCAAATAATGA+AGG 0.469907 5_1:-2957219 Msa0711100:CDS
TTATGACTTTACTTCGTGAT+GGG 0.473550 5_1:-2960112 Msa0711100:CDS
ACTTCAGGTTACTAATGAAA+AGG 0.473839 5_1:-2958278 Msa0711100:intron
TCAAACCCTTCAAAATAAGT+TGG 0.474280 5_1:-2963387 Msa0711100:CDS
GAAAGAGAAGAGAATGAATG+TGG 0.474461 5_1:-2959993 Msa0711100:CDS
CTTCATCGAACTTCTGTACC+AGG 0.480559 5_1:+2955432 None:intergenic
TAAAACTGTTTCACAGTCCA+AGG 0.482871 5_1:-2959946 Msa0711100:intron
TAGACACTGTTTCTGCTGCC+GGG 0.488971 5_1:-2955521 Msa0711100:CDS
TGTACATTTAACATCCCAAC+TGG 0.489928 5_1:+2960795 None:intergenic
TACTGAATTTGTCAAGTCAA+GGG 0.490617 5_1:-2955333 Msa0711100:three_prime_UTR
ACTAATCAAGGAGTTGATAG+TGG 0.490706 5_1:-2957351 Msa0711100:CDS
ATGTGATTGATGAAAGAGTC+AGG 0.492265 5_1:-2960064 Msa0711100:CDS
ATTATGACTTTACTTCGTGA+TGG 0.492351 5_1:-2960113 Msa0711100:CDS
TTCTGTAAGCCTGAGAAAGT+TGG 0.497201 5_1:+2963330 None:intergenic
ACATACCGTGTTCCAGTTGT+CGG 0.502743 5_1:+2963608 None:intergenic
ATGAACAAAGTGATTGAGAA+TGG 0.505576 5_1:-2960179 Msa0711100:CDS
CTTGTTATTCGTGAAAGAGA+TGG 0.508903 5_1:-2957318 Msa0711100:CDS
TCTCATCACTGCATTGCTGA+TGG 0.509734 5_1:+2955547 None:intergenic
TTACTGAATTTGTCAAGTCA+AGG 0.510256 5_1:-2955334 Msa0711100:three_prime_UTR
GAGACGATGGATTGGCCCAT+TGG 0.511766 5_1:-2957262 Msa0711100:CDS
TTCTTCAGTCTTTATTTGAA+GGG 0.514902 5_1:+2958948 None:intergenic
CCTTGCAAAATCCACACTGC+TGG 0.515938 5_1:+2957176 None:intergenic
TCATATTTGAGACGATGGAT+TGG 0.516447 5_1:-2957270 Msa0711100:CDS
TGCTGCCGGGTTTGAAATGG+TGG 0.517440 5_1:-2955508 Msa0711100:CDS
CTGCACCGCATTAATCAGGC+AGG 0.517669 5_1:-2955394 Msa0711100:three_prime_UTR
AAAGAGAAGAGAATGAATGT+GGG 0.518802 5_1:-2959992 Msa0711100:CDS
CATGTGCAGAAAATTAGATC+AGG 0.521678 5_1:-2957376 Msa0711100:intron
TAAAGAAAGCATGGATAGCA+TGG 0.524410 5_1:-2956961 Msa0711100:CDS
GGTGATGATGTAAAATTCAA+AGG 0.525421 5_1:-2955372 Msa0711100:three_prime_UTR
GTGATGATGTAAAATTCAAA+GGG 0.526100 5_1:-2955371 Msa0711100:three_prime_UTR
TAGCTACTGCGTTTGCTGAA+AGG 0.528244 5_1:-2963220 Msa0711100:CDS
TGCAACTCTTAAAGAAAGCA+TGG 0.529784 5_1:-2956970 Msa0711100:CDS
TTTAACTAATAAGATGAAGG+AGG 0.533069 5_1:+2955245 None:intergenic
GTAGAGACACTAAGATAAGC+AGG 0.536606 5_1:+2963443 None:intergenic
TGATATGGCTGCTGAGGCTG+AGG 0.539407 5_1:-2963668 Msa0711100:exon
AACTGACCAACTAATAGGTA+AGG 0.540289 5_1:+2955617 None:intergenic
ACGCAGTAGCTACACAGCCC+TGG 0.545060 5_1:+2963231 None:intergenic
AATCTTTGATATGGCTGCTG+AGG 0.550121 5_1:-2963674 Msa0711100:exon
TTAACTAATAAGATGAAGGA+GGG 0.550275 5_1:+2955246 None:intergenic
AGAATGTGACGATACCAGTT+GGG 0.552570 5_1:-2960809 Msa0711100:CDS
CTGTCTTCAAAGTAAACTTA+GGG 0.555011 5_1:-2960459 Msa0711100:CDS
CTCAGATTGTTGTAAGCAGA+AGG 0.556195 5_1:-2962906 Msa0711100:CDS
GGAATTGGCACAATTGAAGC+AGG 0.557492 5_1:-2958242 Msa0711100:CDS
AGAAATCATATTTGAGACGA+TGG 0.558916 5_1:-2957275 Msa0711100:CDS
AAGGAGTCTTTGACTTCGGA+AGG 0.559930 5_1:-2955717 Msa0711100:CDS
TTAGATCAGGAGACTAATCA+AGG 0.561665 5_1:-2957363 Msa0711100:CDS
TGCTCAGATGTTGAGGGACA+TGG 0.562240 5_1:-2955469 Msa0711100:CDS
GCTTCGCCTCTCTCTTTGGA+AGG 0.562484 5_1:-2956913 Msa0711100:intron
ATATTTAACTAATAAGATGA+AGG 0.563572 5_1:+2955242 None:intergenic
GAGGGACATGGAAGCCACTA+CGG 0.572703 5_1:-2955457 Msa0711100:CDS
AAGAATGTGACGATACCAGT+TGG 0.572783 5_1:-2960810 Msa0711100:CDS
ACTCCTCAGAGTCATCCAAA+AGG 0.573589 5_1:+2960770 None:intergenic
CAGCTATGTATGCAACAAGC+TGG 0.576538 5_1:-2963467 Msa0711100:CDS
ACTGAATTTGTCAAGTCAAG+GGG 0.577996 5_1:-2955332 Msa0711100:three_prime_UTR
TATGACTTTACTTCGTGATG+GGG 0.578429 5_1:-2960111 Msa0711100:CDS
GAGACAGAAGTCGGTTACAC+TGG 0.578968 5_1:-2955594 Msa0711100:CDS
TCATTGGCAGTAAAAGCTGA+TGG 0.579584 5_1:-2959230 Msa0711100:CDS
TGGTCAGTTGAGACAGAAGT+CGG 0.581873 5_1:-2955603 Msa0711100:CDS
AAAAGCCAAGGAAAAGGAGG+AGG 0.585798 5_1:-2963091 Msa0711100:CDS
AAGGGATCATGCAATAATTG+AGG 0.586653 5_1:-2963201 Msa0711100:intron
TCTTACAATGTATTTAGAGG+TGG 0.588977 5_1:+2960726 None:intergenic
TAGATTAAGAGTTTCTCTTG+TGG 0.593045 5_1:+2963358 None:intergenic
CTTCTGCTTACAACAATCTG+AGG 0.600713 5_1:+2962907 None:intergenic
CGGTTACACTGGAGATAGTG+AGG 0.607655 5_1:-2955583 Msa0711100:CDS
AACATCACGCATAAAGTGCA+TGG 0.615979 5_1:+2955116 None:intergenic
ACAGTAGTCCAAATAATGAA+GGG 0.616824 5_1:-2957218 Msa0711100:CDS
AAGCTCCACCATTTCAAACC+CGG 0.617983 5_1:+2955503 None:intergenic
AAGAGAAGAGAATGAATGTG+GGG 0.621694 5_1:-2959991 Msa0711100:CDS
GCAGTAAAAGCTGATGGACA+AGG 0.622626 5_1:-2959224 Msa0711100:CDS
GCGATGTCACAACAAATACA+TGG 0.634762 5_1:-2963069 Msa0711100:CDS
ATGATACCTTCCAAAGAGAG+AGG 0.637585 5_1:+2956907 None:intergenic
GGACAAAGTAAACAATTCTG+TGG 0.642709 5_1:-2960483 Msa0711100:CDS
TGCACCGCATTAATCAGGCA+GGG 0.652000 5_1:-2955393 Msa0711100:three_prime_UTR
CATAAAAGAATATGATCGTG+TGG 0.653438 5_1:+2955293 None:intergenic
ATTGGCCCATTGGATGCTAG+TGG 0.655848 5_1:-2957252 Msa0711100:CDS
TCTTCAAAGTAAACTTAGGG+TGG 0.656435 5_1:-2960456 Msa0711100:intron
CGTATCCGACAACTGGAACA+CGG 0.656929 5_1:-2963613 Msa0711100:intron
ATCACCCTGCCTGATTAATG+CGG 0.658035 5_1:+2955389 None:intergenic
TTCTGTACCAGGAACCGTAG+TGG 0.665561 5_1:+2955443 None:intergenic
GGTTACACTGGAGATAGTGA+GGG 0.686893 5_1:-2955582 Msa0711100:CDS
CAACCAGAGATCCAGCAGTG+TGG 0.705158 5_1:-2957187 Msa0711100:CDS
TGATTGATGAAAGAGTCAGG+AGG 0.830978 5_1:-2960061 Msa0711100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAGTATAAAGAAAA+AGG + chr5_1:2957947-2957966 None:intergenic 10.0%
!! TATTATTATTATGAATTTAC+AGG - chr5_1:2957966-2957985 Msa0711100:intron 10.0%
!!! TTTATATTAACTTTTTACTA+TGG + chr5_1:2960770-2960789 None:intergenic 10.0%
!! TAATCTTAATTATTTGTAAT+TGG - chr5_1:2961069-2961088 Msa0711100:intron 10.0%
!!! TTCTGATTTTATTATATATT+TGG - chr5_1:2961710-2961729 Msa0711100:intron 10.0%
!! ATTAAAGTGAAAATGAAAAT+AGG + chr5_1:2956318-2956337 None:intergenic 15.0%
!!! ACTTTTTCATTTTTATTCAA+CGG + chr5_1:2956766-2956785 None:intergenic 15.0%
!!! GTTAGTTTTATAATTTGTTT+CGG - chr5_1:2956809-2956828 Msa0711100:intron 15.0%
!!! TTAGTTTTATAATTTGTTTC+GGG - chr5_1:2956810-2956829 Msa0711100:intron 15.0%
!!! TTTTTGGTAATGAAAAAATA+CGG + chr5_1:2957713-2957732 None:intergenic 15.0%
!! GATTAAACTATTGAAAAATA+AGG + chr5_1:2958467-2958486 None:intergenic 15.0%
!! ATTGAGAATTGAAAATATTA+TGG - chr5_1:2959105-2959124 Msa0711100:intron 15.0%
!!! AAAAAAAAAAAGAGAAGTAT+AGG - chr5_1:2959162-2959181 Msa0711100:intron 15.0%
!!! ATACAAAAATTTCATAGTTT+TGG + chr5_1:2961968-2961987 None:intergenic 15.0%
!!! GAAAGCTTAATTTTTTTAAA+CGG - chr5_1:2963077-2963096 Msa0711100:CDS 15.0%
!! ATATTTAACTAATAAGATGA+AGG + chr5_1:2963599-2963618 None:intergenic 15.0%
!!! TGTATTATTTTTGTTTGTTT+TGG - chr5_1:2963744-2963763 Msa0711100:five_prime_UTR 15.0%
!! TATTGTGTTAATCTTTGATA+TGG - chr5_1:2955155-2955174 Msa0711100:three_prime_UTR 20.0%
!!! CCTTCTTAAATTTTTCATTT+TGG + chr5_1:2956001-2956020 None:intergenic 20.0%
!! CCAAAATGAAAAATTTAAGA+AGG - chr5_1:2955998-2956017 Msa0711100:intron 20.0%
!! AACAAGAAAGGAAATTAAAT+GGG + chr5_1:2956040-2956059 None:intergenic 20.0%
!! TTGTTATCTAGTGTATTATT+GGG + chr5_1:2956139-2956158 None:intergenic 20.0%
!!! TTTGTTATCTAGTGTATTAT+TGG + chr5_1:2956140-2956159 None:intergenic 20.0%
!!! AAAGTATTTGTTACAACTAT+TGG - chr5_1:2956157-2956176 Msa0711100:intron 20.0%
!!! ATTTTGCGAAAATAACATTT+AGG - chr5_1:2956271-2956290 Msa0711100:intron 20.0%
!!! TTTTGCGAAAATAACATTTA+GGG - chr5_1:2956272-2956291 Msa0711100:intron 20.0%
!!! TTCTTTTTAAATAACTAGCA+AGG + chr5_1:2956512-2956531 None:intergenic 20.0%
!!! AATGTTTTTAGAAAGTAAAC+AGG - chr5_1:2956557-2956576 Msa0711100:intron 20.0%
!!! ATGTTTTTCAAATTCAAGTA+AGG + chr5_1:2956686-2956705 None:intergenic 20.0%
!! ATTTGAAAAACATTGTCAAT+AGG - chr5_1:2956693-2956712 Msa0711100:intron 20.0%
!! TTGTGTTTATATAAGACTTT+CGG - chr5_1:2957014-2957033 Msa0711100:intron 20.0%
!! GAAGTGAAGTAATTAATATT+TGG + chr5_1:2957759-2957778 None:intergenic 20.0%
!! AAATCTTACAATGTATTTAG+AGG + chr5_1:2958118-2958137 None:intergenic 20.0%
!! ATTGAAAAATAAGGTTAACA+AGG + chr5_1:2958458-2958477 None:intergenic 20.0%
!!! AACATCATCATTTTAAGTAT+AGG - chr5_1:2958696-2958715 Msa0711100:intron 20.0%
!!! ACATCATCATTTTAAGTATA+GGG - chr5_1:2958697-2958716 Msa0711100:intron 20.0%
!! ATTGATTATGGATTTAATAG+TGG + chr5_1:2958756-2958775 None:intergenic 20.0%
!! AAAGCAAAAACTAAATACAT+GGG + chr5_1:2959714-2959733 None:intergenic 20.0%
!! AAAAGCAAAAACTAAATACA+TGG + chr5_1:2959715-2959734 None:intergenic 20.0%
!! ATATATTTGCATCTGATTTA+TGG - chr5_1:2959760-2959779 Msa0711100:intron 20.0%
!!! TTTGTGTTATTTATAAGTGT+TGG - chr5_1:2960024-2960043 Msa0711100:CDS 20.0%
!! TATCTTATTGTTGAAATTTG+GGG + chr5_1:2960254-2960273 None:intergenic 20.0%
!! GTATCTTATTGTTGAAATTT+GGG + chr5_1:2960255-2960274 None:intergenic 20.0%
!! AGTATCTTATTGTTGAAATT+TGG + chr5_1:2960256-2960275 None:intergenic 20.0%
!! CTATACTATATAGACTATAT+TGG - chr5_1:2960274-2960293 Msa0711100:intron 20.0%
!!! TTTTGATATTATCCAATACT+CGG - chr5_1:2960503-2960522 Msa0711100:CDS 20.0%
!! AAAATATTATTTCCGAGTAT+TGG + chr5_1:2960518-2960537 None:intergenic 20.0%
!!! ATTCAATATTTTTGTATCTC+TGG - chr5_1:2960668-2960687 Msa0711100:intron 20.0%
!!! TTCAATATTTTTGTATCTCT+GGG - chr5_1:2960669-2960688 Msa0711100:intron 20.0%
!! AAAAATAGATTTAGATGCTA+AGG + chr5_1:2960732-2960751 None:intergenic 20.0%
!! AAGAAATTATACTTTCAGAT+TGG + chr5_1:2961181-2961200 None:intergenic 20.0%
!! ATTATATATTTGGATGACTT+TGG - chr5_1:2961720-2961739 Msa0711100:intron 20.0%
!! AAACTATTTAAGTAAACAGA+AGG + chr5_1:2961817-2961836 None:intergenic 20.0%
!!! TTTGTATTTGAAAGTATTTG+AGG - chr5_1:2961981-2962000 Msa0711100:intron 20.0%
!!! TTGTATTTGAAAGTATTTGA+GGG - chr5_1:2961982-2962001 Msa0711100:intron 20.0%
!!! TTTAAAGTTGGAAAACAATT+GGG + chr5_1:2962505-2962524 None:intergenic 20.0%
!!! TTTTAAAGTTGGAAAACAAT+TGG + chr5_1:2962506-2962525 None:intergenic 20.0%
! TAATTGAACGAATTGGAAAT+TGG + chr5_1:2955104-2955123 None:intergenic 25.0%
! AATTTCCAATTCGTTCAATT+AGG - chr5_1:2955103-2955122 Msa0711100:three_prime_UTR 25.0%
!! AAGAATGCATTTTCAAAGAT+TGG - chr5_1:2955418-2955437 Msa0711100:exon 25.0%
!! TTTTTCATCAACTAACTAAC+AGG - chr5_1:2955720-2955739 Msa0711100:CDS 25.0%
! TATAAAGAAGTGGAAAGATT+GGG + chr5_1:2955817-2955836 None:intergenic 25.0%
! ATATAAAGAAGTGGAAAGAT+TGG + chr5_1:2955818-2955837 None:intergenic 25.0%
! GAACAAGAAAGGAAATTAAA+TGG + chr5_1:2956041-2956060 None:intergenic 25.0%
!! TATTTGTTACAACTATTGGA+AGG - chr5_1:2956161-2956180 Msa0711100:intron 25.0%
! GAAAATGAAAATAGGAAACA+TGG + chr5_1:2956310-2956329 None:intergenic 25.0%
! TCAGAAAATGAAAACAGATA+GGG + chr5_1:2956378-2956397 None:intergenic 25.0%
! TTCAGAAAATGAAAACAGAT+AGG + chr5_1:2956379-2956398 None:intergenic 25.0%
!! AAACAATGAACAGAATGTTT+TGG + chr5_1:2956414-2956433 None:intergenic 25.0%
! TTTAGTGTACTTTGGTATTT+AGG - chr5_1:2956851-2956870 Msa0711100:intron 25.0%
! TTAGTGTACTTTGGTATTTA+GGG - chr5_1:2956852-2956871 Msa0711100:intron 25.0%
!! GTATTTAGGGATTTTATTGA+AGG - chr5_1:2956865-2956884 Msa0711100:intron 25.0%
! GTTCATCAACTAATTATCAA+AGG + chr5_1:2957056-2957075 None:intergenic 25.0%
! AAATTCTATGATACACCTTT+AGG + chr5_1:2957130-2957149 None:intergenic 25.0%
!! AGGTGTATCATAGAATTTTA+AGG - chr5_1:2957132-2957151 Msa0711100:intron 25.0%
!!! AATTTTAAGGCTTAGAGTTT+GGG - chr5_1:2957145-2957164 Msa0711100:intron 25.0%
!!! ACATTTTGACTAGAGATATA+TGG + chr5_1:2957247-2957266 None:intergenic 25.0%
! TCTAGTCAAAATGTGAATTT+GGG - chr5_1:2957253-2957272 Msa0711100:CDS 25.0%
! AATTAGTCCTTATAAGGTTT+GGG + chr5_1:2957568-2957587 None:intergenic 25.0%
! AAATTAGTCCTTATAAGGTT+TGG + chr5_1:2957569-2957588 None:intergenic 25.0%
! AAACCTTATAAGGACTAATT+TGG - chr5_1:2957568-2957587 Msa0711100:intron 25.0%
!!! CAGTGCAAAAATAAGTTTTT+TGG + chr5_1:2957729-2957748 None:intergenic 25.0%
!!! CGATTTTGCAAACTTTATTT+TGG + chr5_1:2957796-2957815 None:intergenic 25.0%
!!! TGCTAAAAGTATTTGCATTT+AGG - chr5_1:2957859-2957878 Msa0711100:intron 25.0%
!!! ATTTTTTCGTAGTGTGTAAT+GGG - chr5_1:2957904-2957923 Msa0711100:intron 25.0%
! TTAATAAGTTCTTTCAGATC+AGG - chr5_1:2957992-2958011 Msa0711100:intron 25.0%
! ATTGTAAGATTTCAGAATCT+TGG - chr5_1:2958126-2958145 Msa0711100:intron 25.0%
!! TTTTCCATTTTGAATGCTTT+AGG - chr5_1:2958493-2958512 Msa0711100:intron 25.0%
!! TTTCCATTTTGAATGCTTTA+GGG - chr5_1:2958494-2958513 Msa0711100:intron 25.0%
! GAAGAAGAGAATCAATTTAA+TGG - chr5_1:2958538-2958557 Msa0711100:intron 25.0%
!! TTCATCAATCACATTGATTA+TGG + chr5_1:2958768-2958787 None:intergenic 25.0%
! TTGTGTAAATGTTCAAGATA+AGG + chr5_1:2959086-2959105 None:intergenic 25.0%
!! CAACAAAAATGAGTTTTTCT+CGG - chr5_1:2959205-2959224 Msa0711100:CDS 25.0%
!! AACAAAAATGAGTTTTTCTC+GGG - chr5_1:2959206-2959225 Msa0711100:CDS 25.0%
!! ATTTTTCTGTATCAGATTCA+GGG + chr5_1:2959320-2959339 None:intergenic 25.0%
!! AATTTTTCTGTATCAGATTC+AGG + chr5_1:2959321-2959340 None:intergenic 25.0%
! ATACATTTGAGAAGTTTAAG+AGG - chr5_1:2959367-2959386 Msa0711100:intron 25.0%
! TTTAGATAAGTTAATCCTGT+TGG - chr5_1:2959406-2959425 Msa0711100:intron 25.0%
! CAACAAATATCACTGAAATA+AGG + chr5_1:2959523-2959542 None:intergenic 25.0%
! TGAATTTCAAAAATTGCATC+TGG + chr5_1:2959547-2959566 None:intergenic 25.0%
! CATTAAAATAATGTGACTGA+TGG + chr5_1:2959689-2959708 None:intergenic 25.0%
!! TTCTTCAGTCTTTATTTGAA+GGG + chr5_1:2959893-2959912 None:intergenic 25.0%
! ATATCTTTGCTTCAAACAAT+TGG - chr5_1:2959947-2959966 Msa0711100:CDS 25.0%
! AAACAATTGGAACATTTAGA+TGG - chr5_1:2959960-2959979 Msa0711100:CDS 25.0%
!!! TATGATTACTTTTCTCAAGA+TGG - chr5_1:2960639-2960658 Msa0711100:intron 25.0%
!!! TATCTCTGGGTATTTTTATT+AGG - chr5_1:2960682-2960701 Msa0711100:intron 25.0%
! AAGATAAAGTTACTTACACA+TGG - chr5_1:2960789-2960808 Msa0711100:CDS 25.0%
! TGGAGATCATAAAAGAAATA+CGG + chr5_1:2961142-2961161 None:intergenic 25.0%
!! TTTCTTTTATGATCTCCAAA+AGG - chr5_1:2961144-2961163 Msa0711100:intron 25.0%
!! TTGGATTTTATCAAACCTTT+TGG + chr5_1:2961162-2961181 None:intergenic 25.0%
!!! TTTGCACTTTTTTCTTTTGT+TGG - chr5_1:2961377-2961396 Msa0711100:intron 25.0%
!!! TTTCTTCAGCAAGTTTTTTA+GGG + chr5_1:2961548-2961567 None:intergenic 25.0%
!!! ATTTCTTCAGCAAGTTTTTT+AGG + chr5_1:2961549-2961568 None:intergenic 25.0%
!! ATTTAACTTCGTCAATTCAT+AGG - chr5_1:2961903-2961922 Msa0711100:intron 25.0%
! AATTTCATTGATGTGAGATT+TGG + chr5_1:2962111-2962130 None:intergenic 25.0%
! ATCAATGAAATTTAGATTCG+TGG - chr5_1:2962119-2962138 Msa0711100:intron 25.0%
! TCAATGAAATTTAGATTCGT+GGG - chr5_1:2962120-2962139 Msa0711100:intron 25.0%
!! TTTATTCTTTGGTTCAATTG+TGG + chr5_1:2962238-2962257 None:intergenic 25.0%
! TGTAAAGAACTCATTGATAA+TGG + chr5_1:2962354-2962373 None:intergenic 25.0%
! TCTTTACAAAGAGATACTAA+AGG - chr5_1:2962366-2962385 Msa0711100:intron 25.0%
!! GTAGAAATTAAGTTTGTTCT+AGG + chr5_1:2962421-2962440 None:intergenic 25.0%
! TTAGTGTACTTAGATACTAA+AGG + chr5_1:2962737-2962756 None:intergenic 25.0%
! TCCTTGACCTAAAATTTATA+AGG + chr5_1:2963106-2963125 None:intergenic 25.0%
!! TCAATGAAGCAAAACTTTTA+AGG - chr5_1:2963182-2963201 Msa0711100:intron 25.0%
! AGTTCGATGAAGTAAAATTA+AGG - chr5_1:2963417-2963436 Msa0711100:CDS 25.0%
!! GTGATGATGTAAAATTCAAA+GGG - chr5_1:2963467-2963486 Msa0711100:CDS 25.0%
! TTAACTAATAAGATGAAGGA+GGG + chr5_1:2963595-2963614 None:intergenic 25.0%
! TTTAACTAATAAGATGAAGG+AGG + chr5_1:2963596-2963615 None:intergenic 25.0%
CAAAACCTAATTGAACGAAT+TGG + chr5_1:2955111-2955130 None:intergenic 30.0%
TCATCATCATGAATCGTTAT+TGG - chr5_1:2955200-2955219 Msa0711100:three_prime_UTR 30.0%
TCAAACCCTTCAAAATAAGT+TGG - chr5_1:2955451-2955470 Msa0711100:CDS 30.0%
TAGATTAAGAGTTTCTCTTG+TGG + chr5_1:2955483-2955502 None:intergenic 30.0%
TTCGATATTCTTTGAATGCT+CGG + chr5_1:2955564-2955583 None:intergenic 30.0%
GAAAAATTTAAGCTGCTTCT+CGG + chr5_1:2955588-2955607 None:intergenic 30.0%
! AAGCAGCTTAAATTTTTCCA+GGG - chr5_1:2955590-2955609 Msa0711100:CDS 30.0%
CTTTCCACTTCTTTATATGA+AGG - chr5_1:2955820-2955839 Msa0711100:intron 30.0%
!! TTTTGATTCATCTCTAACAC+AGG - chr5_1:2955895-2955914 Msa0711100:intron 30.0%
ATCTATTCCTAAGAAACTGT+AGG + chr5_1:2956078-2956097 None:intergenic 30.0%
TAGGAAACATGGAAACTAAA+GGG + chr5_1:2956299-2956318 None:intergenic 30.0%
ATAGGAAACATGGAAACTAA+AGG + chr5_1:2956300-2956319 None:intergenic 30.0%
TTAAATAACTAGCAAGGAGA+TGG + chr5_1:2956506-2956525 None:intergenic 30.0%
!!! TTGTTTTGAACTTGAATGCT+TGG - chr5_1:2956587-2956606 Msa0711100:intron 30.0%
TATAAAACTCCCTGTTGAAA+GGG - chr5_1:2956618-2956637 Msa0711100:intron 30.0%
ACCAATTGTAGGTCTATTAT+AGG - chr5_1:2956657-2956676 Msa0711100:intron 30.0%
!!! TTTGTTTCGGGTTTTCAAAT+TGG - chr5_1:2956822-2956841 Msa0711100:intron 30.0%
!!! TTGTTTCGGGTTTTCAAATT+GGG - chr5_1:2956823-2956842 Msa0711100:intron 30.0%
!!! GGGATTATTTTAGTGTACTT+TGG - chr5_1:2956843-2956862 Msa0711100:intron 30.0%
TGTCTAAATAACCACATAGT+CGG - chr5_1:2956981-2957000 Msa0711100:CDS 30.0%
CTTTCGGTATAAACATTTAG+AGG - chr5_1:2957030-2957049 Msa0711100:intron 30.0%
TATGCCTTTGACTAAAAACT+CGG + chr5_1:2957100-2957119 None:intergenic 30.0%
!!! GAATTTTAAGGCTTAGAGTT+TGG - chr5_1:2957144-2957163 Msa0711100:intron 30.0%
AACCTTGAAAACTAGTTCAA+GGG - chr5_1:2957184-2957203 Msa0711100:CDS 30.0%
GTTTCATCCTTATAAGACTT+GGG + chr5_1:2957220-2957239 None:intergenic 30.0%
AGTTTCATCCTTATAAGACT+TGG + chr5_1:2957221-2957240 None:intergenic 30.0%
CTCTAGTCAAAATGTGAATT+TGG - chr5_1:2957252-2957271 Msa0711100:CDS 30.0%
CATGTCAGTTGTCAAAAAAT+CGG - chr5_1:2957449-2957468 Msa0711100:intron 30.0%
!! TTTGATACCATCTGAGATTT+TGG - chr5_1:2957504-2957523 Msa0711100:intron 30.0%
!!! CATTTTTTCGTAGTGTGTAA+TGG - chr5_1:2957903-2957922 Msa0711100:intron 30.0%
! TGTTAAATGTACATGCCTTT+TGG - chr5_1:2958053-2958072 Msa0711100:intron 30.0%
TCTTACAATGTATTTAGAGG+TGG + chr5_1:2958115-2958134 None:intergenic 30.0%
GTTTCAGTGATAATTACACA+AGG - chr5_1:2958155-2958174 Msa0711100:intron 30.0%
CAAATTGAGTAACCAGAATA+AGG + chr5_1:2958185-2958204 None:intergenic 30.0%
! CTTATTCTGGTTACTCAATT+TGG - chr5_1:2958183-2958202 Msa0711100:intron 30.0%
ACTGTCTTCAAAGTAAACTT+AGG - chr5_1:2958378-2958397 Msa0711100:intron 30.0%
CTGTCTTCAAAGTAAACTTA+GGG - chr5_1:2958379-2958398 Msa0711100:intron 30.0%
! AAACCCTAAAGCATTCAAAA+TGG + chr5_1:2958500-2958519 None:intergenic 30.0%
!!! ATTTTGAATGCTTTAGGGTT+TGG - chr5_1:2958499-2958518 Msa0711100:intron 30.0%
AAATCTGCAAATAAGTCATC+AGG + chr5_1:2958637-2958656 None:intergenic 30.0%
ATGAACAAAGTGATTGAGAA+TGG - chr5_1:2958659-2958678 Msa0711100:intron 30.0%
ATTATGACTTTACTTCGTGA+TGG - chr5_1:2958725-2958744 Msa0711100:intron 30.0%
TTATGACTTTACTTCGTGAT+GGG - chr5_1:2958726-2958745 Msa0711100:intron 30.0%
TGAGAATATTGAGCCAAATT+TGG - chr5_1:2958805-2958824 Msa0711100:intron 30.0%
AAAGAGAAGAGAATGAATGT+GGG - chr5_1:2958846-2958865 Msa0711100:intron 30.0%
!! GTGAAACAGTTTTATCTTGA+GGG + chr5_1:2958886-2958905 None:intergenic 30.0%
!! TGTGAAACAGTTTTATCTTG+AGG + chr5_1:2958887-2958906 None:intergenic 30.0%
!! CATGAGATTTTCTTTGAGAA+AGG + chr5_1:2958945-2958964 None:intergenic 30.0%
ATTTCAGTCTAATAACGGTT+AGG + chr5_1:2959236-2959255 None:intergenic 30.0%
GCTCAATTTCAGTCTAATAA+CGG + chr5_1:2959241-2959260 None:intergenic 30.0%
GTATTCTTCATCATCAGATT+GGG + chr5_1:2959287-2959306 None:intergenic 30.0%
TGTATTCTTCATCATCAGAT+TGG + chr5_1:2959288-2959307 None:intergenic 30.0%
! TCTGATGATGAAGAATACAA+TGG - chr5_1:2959289-2959308 Msa0711100:intron 30.0%
! CTGATGATGAAGAATACAAT+GGG - chr5_1:2959290-2959309 Msa0711100:intron 30.0%
ATGACATTGCTCTTCTTAAT+AGG - chr5_1:2959436-2959455 Msa0711100:intron 30.0%
TGCAATTAAATGTCCTAAGT+TGG - chr5_1:2959481-2959500 Msa0711100:intron 30.0%
!!! TTCATCTGATGTTTTAGCAA+TGG - chr5_1:2959640-2959659 Msa0711100:intron 30.0%
!! TAGTTTTTGCTTTTCCTCTT+AGG - chr5_1:2959721-2959740 Msa0711100:intron 30.0%
! GTTCTTCAGTCTTTATTTGA+AGG + chr5_1:2959894-2959913 None:intergenic 30.0%
!! ACTTCAAAAGAACTTGTTAC+AGG - chr5_1:2959912-2959931 Msa0711100:intron 30.0%
CTTGAGATGAGTTTATAAAG+AGG - chr5_1:2960183-2960202 Msa0711100:CDS 30.0%
GCTGTAAATTTGTAGTATCT+TGG - chr5_1:2960313-2960332 Msa0711100:CDS 30.0%
! ATTTGTAGTATCTTGGTCTT+TGG - chr5_1:2960320-2960339 Msa0711100:CDS 30.0%
!!! AGCATAGCTTTATTTTCTGA+AGG + chr5_1:2960392-2960411 None:intergenic 30.0%
! ATGTATATGCCTGTGATTTT+CGG - chr5_1:2960442-2960461 Msa0711100:intron 30.0%
!!! GCACATGTGGTTTTAAAATT+TGG + chr5_1:2960478-2960497 None:intergenic 30.0%
ATCAATCATTCATACCTCAA+AGG - chr5_1:2960839-2960858 Msa0711100:CDS 30.0%
!!! GAAACAGTGTTCTAGTTTTT+TGG - chr5_1:2960969-2960988 Msa0711100:intron 30.0%
AGTTTGGTATACTTGACTAT+TGG - chr5_1:2961321-2961340 Msa0711100:intron 30.0%
TATACTTGACTATTGGTGAA+TGG - chr5_1:2961328-2961347 Msa0711100:intron 30.0%
ACAAGCAGAAAAATGAAATG+AGG + chr5_1:2961358-2961377 None:intergenic 30.0%
! AGAAATCATATTTGAGACGA+TGG - chr5_1:2961563-2961582 Msa0711100:intron 30.0%
ACAGTAGTCCAAATAATGAA+GGG - chr5_1:2961620-2961639 Msa0711100:intron 30.0%
AAGAACTTCCCTTCATTATT+TGG + chr5_1:2961631-2961650 None:intergenic 30.0%
! GCAAGGTATGTGTTAATTTT+TGG - chr5_1:2961679-2961698 Msa0711100:intron 30.0%
!!! GGAAACATTTTTTGTCATAG+AGG + chr5_1:2961788-2961807 None:intergenic 30.0%
TAAGTAAACAGAAGGATGAA+AGG + chr5_1:2961809-2961828 None:intergenic 30.0%
!! TTTGAAAGTATTTGAGGGAA+AGG - chr5_1:2961987-2962006 Msa0711100:intron 30.0%
AAAAATGCAATCCCAACATT+AGG + chr5_1:2962024-2962043 None:intergenic 30.0%
!!! CTTGTGGTTATTTTGGTTAT+TGG + chr5_1:2962163-2962182 None:intergenic 30.0%
! GCTCTATCTTGTTTATTCTT+TGG + chr5_1:2962249-2962268 None:intergenic 30.0%
ACAGAATTGTTTACCAAGTT+TGG - chr5_1:2962286-2962305 Msa0711100:intron 30.0%
!! AGAACTCATTGATAATGGAT+TGG + chr5_1:2962349-2962368 None:intergenic 30.0%
ACTTAGATACTAAAGGTTGA+AGG + chr5_1:2962730-2962749 None:intergenic 30.0%
TTTGCATTTCAACAAAATCG+TGG + chr5_1:2962984-2963003 None:intergenic 30.0%
AATAACATGATAAGATTCCG+TGG + chr5_1:2963044-2963063 None:intergenic 30.0%
! ACGGTTGCCTTATAAATTTT+AGG - chr5_1:2963096-2963115 Msa0711100:CDS 30.0%
!! GCCTTATAAATTTTAGGTCA+AGG - chr5_1:2963102-2963121 Msa0711100:intron 30.0%
! GGTGATGATGTAAAATTCAA+AGG - chr5_1:2963466-2963485 Msa0711100:CDS 30.0%
TTACTGAATTTGTCAAGTCA+AGG - chr5_1:2963504-2963523 Msa0711100:intron 30.0%
TACTGAATTTGTCAAGTCAA+GGG - chr5_1:2963505-2963524 Msa0711100:intron 30.0%
CATAAAAGAATATGATCGTG+TGG + chr5_1:2963548-2963567 None:intergenic 30.0%
!!! AACCATGCACTTTTTTTGAA+AGG - chr5_1:2963693-2963712 Msa0711100:intron 30.0%
! TTCCTTTCAAAAAAAGTGCA+TGG + chr5_1:2963698-2963717 None:intergenic 30.0%
!!! GCACTTTTTTTGAAAGGAAT+AGG - chr5_1:2963699-2963718 Msa0711100:intron 30.0%
!!! AGCAGCCAACTTATTTTGAA+GGG + chr5_1:2955459-2955478 None:intergenic 35.0%
!!! AAGCAGCCAACTTATTTTGA+AGG + chr5_1:2955460-2955479 None:intergenic 35.0%
! GAAGCAGCTTAAATTTTTCC+AGG - chr5_1:2955589-2955608 Msa0711100:CDS 35.0%
AAGGGATCATGCAATAATTG+AGG - chr5_1:2955637-2955656 Msa0711100:CDS 35.0%
AAATACATGGCTTCCTCAAA+AGG - chr5_1:2955782-2955801 Msa0711100:intron 35.0%
TGGTCCTTCATATAAAGAAG+TGG + chr5_1:2955827-2955846 None:intergenic 35.0%
CATGCAGACAGTATTAAACA+TGG + chr5_1:2955847-2955866 None:intergenic 35.0%
TTTAATACTGTCTGCATGCA+TGG - chr5_1:2955849-2955868 Msa0711100:intron 35.0%
!! AGCTCTGAATTGAACAAGAA+AGG + chr5_1:2956052-2956071 None:intergenic 35.0%
AGCTTATCCTACAGTTTCTT+AGG - chr5_1:2956068-2956087 Msa0711100:intron 35.0%
AGGAAACATGGAAACTAAAG+GGG + chr5_1:2956298-2956317 None:intergenic 35.0%
CTATAAAACTCCCTGTTGAA+AGG - chr5_1:2956617-2956636 Msa0711100:intron 35.0%
ATTGTTGAACCCTTTCAACA+GGG + chr5_1:2956630-2956649 None:intergenic 35.0%
TGTTGAAAGGGTTCAACAAT+GGG - chr5_1:2956630-2956649 Msa0711100:intron 35.0%
GCCTATAATAGACCTACAAT+TGG + chr5_1:2956661-2956680 None:intergenic 35.0%
AAATAACCACATAGTCGGTT+TGG - chr5_1:2956986-2957005 Msa0711100:CDS 35.0%
CAACCTTGAAAACTAGTTCA+AGG - chr5_1:2957183-2957202 Msa0711100:CDS 35.0%
!!! ATCCCTTGAACTAGTTTTCA+AGG + chr5_1:2957189-2957208 None:intergenic 35.0%
ACACTACATATGTCTTGTCT+TGG + chr5_1:2957296-2957315 None:intergenic 35.0%
AAGACAAGACATATGTAGTG+TGG - chr5_1:2957295-2957314 Msa0711100:CDS 35.0%
AGTCAATAACAGATCTCTGA+TGG - chr5_1:2957338-2957357 Msa0711100:CDS 35.0%
!!! CGATTTTTTGACAACTGACA+TGG + chr5_1:2957451-2957470 None:intergenic 35.0%
AGTTGTCAAAAAATCGGTCA+TGG - chr5_1:2957455-2957474 Msa0711100:intron 35.0%
! CATCAAGTGTTGTTATATGG+CGG + chr5_1:2957481-2957500 None:intergenic 35.0%
! TGCCATCAAGTGTTGTTATA+TGG + chr5_1:2957484-2957503 None:intergenic 35.0%
ATGAGTTCCAAAATCTCAGA+TGG + chr5_1:2957514-2957533 None:intergenic 35.0%
CATCCATAAAACCTAGCTTA+AGG - chr5_1:2957531-2957550 Msa0711100:intron 35.0%
! ACTCCTTAAGCTAGGTTTTA+TGG + chr5_1:2957537-2957556 None:intergenic 35.0%
AAAACCTAGCTTAAGGAGTA+AGG - chr5_1:2957538-2957557 Msa0711100:intron 35.0%
TAATCCTTACTCCTTAAGCT+AGG + chr5_1:2957545-2957564 None:intergenic 35.0%
AGGATTACCCAAACCTTATA+AGG - chr5_1:2957558-2957577 Msa0711100:intron 35.0%
TGGCCAAATTAGTCCTTATA+AGG + chr5_1:2957574-2957593 None:intergenic 35.0%
AATTTGGCCATATCTCTGAA+TGG - chr5_1:2957584-2957603 Msa0711100:intron 35.0%
TGTACATTTAACATCCCAAC+TGG + chr5_1:2958046-2958065 None:intergenic 35.0%
!! TGAGAGCATAGCATTTTACT+GGG + chr5_1:2958211-2958230 None:intergenic 35.0%
!! TTGAGAGCATAGCATTTTAC+TGG + chr5_1:2958212-2958231 None:intergenic 35.0%
GATCACTGTTGTATGTACTT+AGG - chr5_1:2958245-2958264 Msa0711100:CDS 35.0%
GGACAAAGTAAACAATTCTG+TGG - chr5_1:2958355-2958374 Msa0711100:intron 35.0%
TCTTCAAAGTAAACTTAGGG+TGG - chr5_1:2958382-2958401 Msa0711100:intron 35.0%
ATGAGATGAATCAACAACAG+AGG + chr5_1:2958430-2958449 None:intergenic 35.0%
TATGACTTTACTTCGTGATG+GGG - chr5_1:2958727-2958746 Msa0711100:intron 35.0%
ATGTGATTGATGAAAGAGTC+AGG - chr5_1:2958774-2958793 Msa0711100:intron 35.0%
TCTCTTAGATGGACCAAATT+TGG + chr5_1:2958821-2958840 None:intergenic 35.0%
GAAAGAGAAGAGAATGAATG+TGG - chr5_1:2958845-2958864 Msa0711100:intron 35.0%
AAGAGAAGAGAATGAATGTG+GGG - chr5_1:2958847-2958866 Msa0711100:intron 35.0%
TAAAACTGTTTCACAGTCCA+AGG - chr5_1:2958892-2958911 Msa0711100:intron 35.0%
! TTATAGCGATTGATGGCTTA+TGG - chr5_1:2958987-2959006 Msa0711100:CDS 35.0%
ACTCTAATCTAGACCAACTT+AGG + chr5_1:2959497-2959516 None:intergenic 35.0%
! AAGTTGGTCTAGATTAGAGT+TGG - chr5_1:2959497-2959516 Msa0711100:intron 35.0%
CAGTATTCTGTAAGGAGTAA+CGG + chr5_1:2959580-2959599 None:intergenic 35.0%
TGATCAGTGAAAAACCTAAG+AGG + chr5_1:2959738-2959757 None:intergenic 35.0%
GCAAGAAGAAAGACATCTAT+TGG - chr5_1:2959849-2959868 Msa0711100:intron 35.0%
ACATTTAGATGGTAGTAGCT+TGG - chr5_1:2959971-2959990 Msa0711100:CDS 35.0%
!! GAGTCTTATTTATCCGATGT+GGG + chr5_1:2960164-2960183 None:intergenic 35.0%
!! AGAGTCTTATTTATCCGATG+TGG + chr5_1:2960165-2960184 None:intergenic 35.0%
GAGATGAGTTTATAAAGAGG+AGG - chr5_1:2960186-2960205 Msa0711100:CDS 35.0%
!! TTGCGTTGGATATTTTGAAG+AGG + chr5_1:2960421-2960440 None:intergenic 35.0%
TATCAAAATCTTCGCACATG+TGG + chr5_1:2960491-2960510 None:intergenic 35.0%
! GAGTTGTTGTGTTTTACTTC+AGG - chr5_1:2960545-2960564 Msa0711100:intron 35.0%
! AAGGTTTGACAGTTTTCCAT+TGG - chr5_1:2960858-2960877 Msa0711100:intron 35.0%
! ACTTTGAGCTTTTCACTTTC+AGG + chr5_1:2961026-2961045 None:intergenic 35.0%
GTATACCAAACTAAGATTGC+AGG + chr5_1:2961252-2961271 None:intergenic 35.0%
GTATACCAAACTAAGATTGC+AGG + chr5_1:2961252-2961271 None:intergenic 35.0%
!! ATGGCTTTTGAAAGCAATGA+AGG + chr5_1:2961413-2961432 None:intergenic 35.0%
CATGTGCAGAAAATTAGATC+AGG - chr5_1:2961462-2961481 Msa0711100:intron 35.0%
TTAGATCAGGAGACTAATCA+AGG - chr5_1:2961475-2961494 Msa0711100:intron 35.0%
!! ACTAATCAAGGAGTTGATAG+TGG - chr5_1:2961487-2961506 Msa0711100:intron 35.0%
!! CTTGTTATTCGTGAAAGAGA+TGG - chr5_1:2961520-2961539 Msa0711100:intron 35.0%
! TCATATTTGAGACGATGGAT+TGG - chr5_1:2961568-2961587 Msa0711100:intron 35.0%
GACAGTAGTCCAAATAATGA+AGG - chr5_1:2961619-2961638 Msa0711100:intron 35.0%
TCATAGAGGTCTCTTCAAAA+AGG + chr5_1:2961774-2961793 None:intergenic 35.0%
TGCAACTCTTAAAGAAAGCA+TGG - chr5_1:2961868-2961887 Msa0711100:intron 35.0%
! TAAAGAAAGCATGGATAGCA+TGG - chr5_1:2961877-2961896 Msa0711100:intron 35.0%
ATTCTAATCAGCTTCTAGTG+TGG - chr5_1:2962066-2962085 Msa0711100:intron 35.0%
!! GTTGTTGCTTGTGGTTATTT+TGG + chr5_1:2962170-2962189 None:intergenic 35.0%
CTTGTTTAGGGGAAAAGATT+GGG + chr5_1:2962450-2962469 None:intergenic 35.0%
! TCTTGTTTAGGGGAAAAGAT+TGG + chr5_1:2962451-2962470 None:intergenic 35.0%
! ATCATTGGGTCTCTTGTTTA+GGG + chr5_1:2962462-2962481 None:intergenic 35.0%
! AATCATTGGGTCTCTTGTTT+AGG + chr5_1:2962463-2962482 None:intergenic 35.0%
AAAACAATTGGGAAACACCT+CGG + chr5_1:2962494-2962513 None:intergenic 35.0%
!!! TGGGGGTTAGATTTTAAAGT+TGG + chr5_1:2962517-2962536 None:intergenic 35.0%
AAAAGAGAAGATCCTTAGGA+TGG + chr5_1:2962548-2962567 None:intergenic 35.0%
! ATCCTAAGGATCTTCTCTTT+TGG - chr5_1:2962547-2962566 Msa0711100:intron 35.0%
AGATTCTTTGTGAGCAACTT+GGG + chr5_1:2962587-2962606 None:intergenic 35.0%
AATCTTGGAGAACCAAAAGA+GGG + chr5_1:2962675-2962694 None:intergenic 35.0%
AAGCTTCAAGATGTGAATCT+TGG + chr5_1:2962690-2962709 None:intergenic 35.0%
ACTAAAGGTTGAAGGTCTTT+GGG + chr5_1:2962722-2962741 None:intergenic 35.0%
TACTAAAGGTTGAAGGTCTT+TGG + chr5_1:2962723-2962742 None:intergenic 35.0%
ATCTCATGGAAACTAAAGGA+GGG + chr5_1:2962765-2962784 None:intergenic 35.0%
AATCTCATGGAAACTAAAGG+AGG + chr5_1:2962766-2962785 None:intergenic 35.0%
GTGAATCTCATGGAAACTAA+AGG + chr5_1:2962769-2962788 None:intergenic 35.0%
TTGTTGAGTAAGCTTGGTAA+TGG + chr5_1:2962791-2962810 None:intergenic 35.0%
TACCAAGCTTACTCAACAAA+TGG - chr5_1:2962792-2962811 Msa0711100:intron 35.0%
ACCAAGCTTACTCAACAAAT+GGG - chr5_1:2962793-2962812 Msa0711100:intron 35.0%
AAGAAATCGTAGCACGATTT+AGG + chr5_1:2962904-2962923 None:intergenic 35.0%
GTTTGCTTTGACAAAAATCG+TGG + chr5_1:2962937-2962956 None:intergenic 35.0%
! CTTCATTGATAGCACCATTA+AGG + chr5_1:2963171-2963190 None:intergenic 35.0%
!! AAACTTTTAAGGACTGCTCT+TGG - chr5_1:2963193-2963212 Msa0711100:intron 35.0%
AACTGACCAACTAATAGGTA+AGG + chr5_1:2963224-2963243 None:intergenic 35.0%
ACTGAATTTGTCAAGTCAAG+GGG - chr5_1:2963506-2963525 Msa0711100:intron 35.0%
AATCTTTGATATGGCTGCTG+AGG - chr5_1:2955164-2955183 Msa0711100:three_prime_UTR 40.0%
GTAGAGACACTAAGATAAGC+AGG + chr5_1:2955398-2955417 None:intergenic 40.0%
! GCATTTTCAAAGATTGGAGC+AGG - chr5_1:2955424-2955443 Msa0711100:exon 40.0%
TCTACAAGACCAACTTTCTC+AGG - chr5_1:2955499-2955518 Msa0711100:CDS 40.0%
TTCTGTAAGCCTGAGAAAGT+TGG + chr5_1:2955511-2955530 None:intergenic 40.0%
TGAAAAAGCCAAGGAAAAGG+AGG - chr5_1:2955744-2955763 Msa0711100:intron 40.0%
GCGATGTCACAACAAATACA+TGG - chr5_1:2955769-2955788 Msa0711100:intron 40.0%
! TGGGAATACCATACCTTTTG+AGG + chr5_1:2955798-2955817 None:intergenic 40.0%
CTTCTGCTTACAACAATCTG+AGG + chr5_1:2955934-2955953 None:intergenic 40.0%
CTCAGATTGTTGTAAGCAGA+AGG - chr5_1:2955932-2955951 Msa0711100:intron 40.0%
CATTGTTGAACCCTTTCAAC+AGG + chr5_1:2956631-2956650 None:intergenic 40.0%
CTGTTGAAAGGGTTCAACAA+TGG - chr5_1:2956629-2956648 Msa0711100:intron 40.0%
TTGTTGTGTGACTAGGACAT+AGG + chr5_1:2956737-2956756 None:intergenic 40.0%
!! GTTTGAGTTGTTGTGTGACT+AGG + chr5_1:2956744-2956763 None:intergenic 40.0%
GAACTCCAACCATTATGTCA+AGG + chr5_1:2956895-2956914 None:intergenic 40.0%
ACAATTGACCTCCAATGACA+TGG + chr5_1:2956921-2956940 None:intergenic 40.0%
!!! GTGTCCGAGTTTTTAGTCAA+AGG - chr5_1:2957093-2957112 Msa0711100:intron 40.0%
CTATGATACACCTTTAGGTG+TGG + chr5_1:2957125-2957144 None:intergenic 40.0%
! GTGATTGCCCAAGTCTTATA+AGG - chr5_1:2957210-2957229 Msa0711100:CDS 40.0%
GCAATGGCATGTTTATATGG+TGG + chr5_1:2957397-2957416 None:intergenic 40.0%
CCAGCAATGGCATGTTTATA+TGG + chr5_1:2957400-2957419 None:intergenic 40.0%
CCATATAAACATGCCATTGC+TGG - chr5_1:2957397-2957416 Msa0711100:intron 40.0%
CTGACATGGACAATTTGTGA+AGG + chr5_1:2957437-2957456 None:intergenic 40.0%
CGCCATATAACAACACTTGA+TGG - chr5_1:2957479-2957498 Msa0711100:intron 40.0%
TCCTACACCATTCAGAGATA+TGG + chr5_1:2957594-2957613 None:intergenic 40.0%
GGTATCGTCACATTCTTTCT+GGG + chr5_1:2958025-2958044 None:intergenic 40.0%
TGGTATCGTCACATTCTTTC+TGG + chr5_1:2958026-2958045 None:intergenic 40.0%
AAGAATGTGACGATACCAGT+TGG - chr5_1:2958028-2958047 Msa0711100:intron 40.0%
AGAATGTGACGATACCAGTT+GGG - chr5_1:2958029-2958048 Msa0711100:intron 40.0%
! ACACAAGGTGTTCCTTATTC+TGG - chr5_1:2958170-2958189 Msa0711100:intron 40.0%
CAGGATTCAGAGTTTGCAAA+TGG + chr5_1:2958618-2958637 None:intergenic 40.0%
TGATTGATGAAAGAGTCAGG+AGG - chr5_1:2958777-2958796 Msa0711100:intron 40.0%
CTCTTTCTTCGTCTCTTAGA+TGG + chr5_1:2958832-2958851 None:intergenic 40.0%
TAGTGAGCAGTTTCAAACCT+TGG + chr5_1:2958912-2958931 None:intergenic 40.0%
! AGAGCACTTATAGCGATTGA+TGG - chr5_1:2958980-2958999 Msa0711100:CDS 40.0%
CAGTCTAATAACGGTTAGGA+TGG + chr5_1:2959232-2959251 None:intergenic 40.0%
AATGTCATTGTCATGCCAAC+AGG + chr5_1:2959424-2959443 None:intergenic 40.0%
CGTTACTCCTTACAGAATAC+TGG - chr5_1:2959578-2959597 Msa0711100:intron 40.0%
GACAAGACCAGTATTCTGTA+AGG + chr5_1:2959588-2959607 None:intergenic 40.0%
!! GAATACTGGTCTTGTCTCAT+TGG - chr5_1:2959592-2959611 Msa0711100:intron 40.0%
TCATTGGCAGTAAAAGCTGA+TGG - chr5_1:2959608-2959627 Msa0711100:intron 40.0%
AGCAATGGCATTGCATGAAA+AGG - chr5_1:2959655-2959674 Msa0711100:intron 40.0%
CCTGAAGCATAAAGCAAGAT+AGG + chr5_1:2959804-2959823 None:intergenic 40.0%
CCTATCTTGCTTTATGCTTC+AGG - chr5_1:2959801-2959820 Msa0711100:intron 40.0%
TGGAAATTCCGCCTTAATTG+CGG - chr5_1:2960044-2960063 Msa0711100:CDS 40.0%
CTAACGAAAGGTCGCAATTA+AGG + chr5_1:2960084-2960103 None:intergenic 40.0%
!! GTTCTTTGTGTTGGCTTTGA+GGG - chr5_1:2960126-2960145 Msa0711100:CDS 40.0%
!! TTCTTTGTGTTGGCTTTGAG+GGG - chr5_1:2960127-2960146 Msa0711100:CDS 40.0%
CTAACTCATCCTTACAGAAC+CGG + chr5_1:2960230-2960249 None:intergenic 40.0%
CAGGCATATACATATTGCGT+TGG + chr5_1:2960435-2960454 None:intergenic 40.0%
! ATGCCTGTGATTTTCGGATT+AGG - chr5_1:2960448-2960467 Msa0711100:intron 40.0%
! TGCCTGTGATTTTCGGATTA+GGG - chr5_1:2960449-2960468 Msa0711100:intron 40.0%
! GGTGAAAGCTCTAATGGAAT+TGG - chr5_1:2960581-2960600 Msa0711100:intron 40.0%
GCAGGAACATCAATTACTTC+TGG - chr5_1:2960614-2960633 Msa0711100:intron 40.0%
GGAAAACTGTCAAACCTTTG+AGG + chr5_1:2960856-2960875 None:intergenic 40.0%
! GTTTGACAGTTTTCCATTGG+CGG - chr5_1:2960861-2960880 Msa0711100:intron 40.0%
! ATTGCCCAACTCTTTTCTTC+AGG - chr5_1:2960887-2960906 Msa0711100:intron 40.0%
CTAGCCTGAAGAAAAGAGTT+GGG + chr5_1:2960894-2960913 None:intergenic 40.0%
GCAGGAAGAGATGAACTATA+CGG - chr5_1:2960941-2960960 Msa0711100:intron 40.0%
AAGAGATGAACTATACGGTG+TGG - chr5_1:2960946-2960965 Msa0711100:intron 40.0%
AGAGATGAACTATACGGTGT+GGG - chr5_1:2960947-2960966 Msa0711100:intron 40.0%
!! TTGGTTTGGCAAGACAATCA+AGG + chr5_1:2961095-2961114 None:intergenic 40.0%
CTCTTCCTGCAATCTTAGTT+TGG - chr5_1:2961244-2961263 Msa0711100:intron 40.0%
CTCTTCCTGCAATCTTAGTT+TGG - chr5_1:2961244-2961263 Msa0711100:intron 40.0%
! CTTTTCCACTAGCATCCAAT+GGG + chr5_1:2961594-2961613 None:intergenic 40.0%
! TCTTTTCCACTAGCATCCAA+TGG + chr5_1:2961595-2961614 None:intergenic 40.0%
ATGATACCTTCCAAAGAGAG+AGG + chr5_1:2961934-2961953 None:intergenic 40.0%
AAGTATTTGAGGGAAAGGAC+AGG - chr5_1:2961992-2962011 Msa0711100:intron 40.0%
AATGCAATCCCAACATTAGG+AGG + chr5_1:2962021-2962040 None:intergenic 40.0%
!! CTAGTGTGGTGTTGTGAATT+CGG - chr5_1:2962080-2962099 Msa0711100:intron 40.0%
! TCTGTAGTTGTTGTTGCTTG+TGG + chr5_1:2962179-2962198 None:intergenic 40.0%
AGGGGAAAAGATTGGGAAAA+AGG + chr5_1:2962443-2962462 None:intergenic 40.0%
! TCATTGGGTCTCTTGTTTAG+GGG + chr5_1:2962461-2962480 None:intergenic 40.0%
AAACAATTGGGAAACACCTC+GGG + chr5_1:2962493-2962512 None:intergenic 40.0%
! TTAGGATGGTTCTCTTTTGG+GGG + chr5_1:2962534-2962553 None:intergenic 40.0%
! CTTAGGATGGTTCTCTTTTG+GGG + chr5_1:2962535-2962554 None:intergenic 40.0%
! CCTTAGGATGGTTCTCTTTT+GGG + chr5_1:2962536-2962555 None:intergenic 40.0%
! TCCTTAGGATGGTTCTCTTT+TGG + chr5_1:2962537-2962556 None:intergenic 40.0%
GACCAAAAGAGAAGATCCTT+AGG + chr5_1:2962552-2962571 None:intergenic 40.0%
GAGATTCTTTGTGAGCAACT+TGG + chr5_1:2962588-2962607 None:intergenic 40.0%
ATCTTGGAGAACCAAAAGAG+GGG + chr5_1:2962674-2962693 None:intergenic 40.0%
GAATCTTGGAGAACCAAAAG+AGG + chr5_1:2962676-2962695 None:intergenic 40.0%
!! CTTGGTAATGGTGAATCTCA+TGG + chr5_1:2962779-2962798 None:intergenic 40.0%
! ACCCATTTGTTGAGTAAGCT+TGG + chr5_1:2962797-2962816 None:intergenic 40.0%
CTTACTCAACAAATGGGTCA+AGG - chr5_1:2962799-2962818 Msa0711100:intron 40.0%
TGTGTACTAACGTGAAATCG+TGG + chr5_1:2962862-2962881 None:intergenic 40.0%
ACAAAAATCGTGGCACAAGA+GGG + chr5_1:2962927-2962946 None:intergenic 40.0%
TTGAGTCAAAACTCAACACG+TGG - chr5_1:2963013-2963032 Msa0711100:intron 40.0%
GGTGTTTCAGAAGTCCTTAA+TGG - chr5_1:2963154-2963173 Msa0711100:intron 40.0%
GTCTCAACTGACCAACTAAT+AGG + chr5_1:2963229-2963248 None:intergenic 40.0%
! TTTTTGCTGCTCAGATGTTG+AGG - chr5_1:2963362-2963381 Msa0711100:CDS 40.0%
! TTTTGCTGCTCAGATGTTGA+GGG - chr5_1:2963363-2963382 Msa0711100:CDS 40.0%
CAACTCAACTTTCACGTTCT+TGG - chr5_1:2963648-2963667 Msa0711100:CDS 40.0%
AACATCACGCATAAAGTGCA+TGG + chr5_1:2963725-2963744 None:intergenic 40.0%
ACATACCGTGTTCCAGTTGT+CGG + chr5_1:2955233-2955252 None:intergenic 45.0%
CAGCTATGTATGCAACAAGC+TGG - chr5_1:2955371-2955390 Msa0711100:three_prime_UTR 45.0%
! TAGCTACTGCGTTTGCTGAA+AGG - chr5_1:2955618-2955637 Msa0711100:CDS 45.0%
! AGCTACTGCGTTTGCTGAAA+GGG - chr5_1:2955619-2955638 Msa0711100:CDS 45.0%
CTAACAGGCTGAAAAAGCCA+AGG - chr5_1:2955735-2955754 Msa0711100:intron 45.0%
GGCTGAAAAAGCCAAGGAAA+AGG - chr5_1:2955741-2955760 Msa0711100:intron 45.0%
AAAAGCCAAGGAAAAGGAGG+AGG - chr5_1:2955747-2955766 Msa0711100:intron 45.0%
CATGGCTTCCTCAAAAGGTA+TGG - chr5_1:2955787-2955806 Msa0711100:intron 45.0%
GAAAGGGTTCAACAATGGGT+TGG - chr5_1:2956634-2956653 Msa0711100:intron 45.0%
!! CAATGGGTTGGACCAATTGT+AGG - chr5_1:2956646-2956665 Msa0711100:intron 45.0%
GAAGGAGAGCCTTGACATAA+TGG - chr5_1:2956883-2956902 Msa0711100:intron 45.0%
GAGAGCCTTGACATAATGGT+TGG - chr5_1:2956887-2956906 Msa0711100:intron 45.0%
TGGAGTTCATGCCATGTCAT+TGG - chr5_1:2956907-2956926 Msa0711100:intron 45.0%
AGTTCATGCCATGTCATTGG+AGG - chr5_1:2956910-2956929 Msa0711100:intron 45.0%
AATCAGCCTCTTGCAAAGCA+AGG - chr5_1:2956952-2956971 Msa0711100:CDS 45.0%
AAGGCATACTCCACACCTAA+AGG - chr5_1:2957112-2957131 Msa0711100:intron 45.0%
GATGGCATCAGTGTTGTCAA+TGG - chr5_1:2957356-2957375 Msa0711100:CDS 45.0%
! AAACATGCCATTGCTGGCTA+TGG - chr5_1:2957403-2957422 Msa0711100:intron 45.0%
GCCATATCTCTGAATGGTGT+AGG - chr5_1:2957590-2957609 Msa0711100:intron 45.0%
AGGATCTCAACAGTGTACTC+TGG - chr5_1:2957610-2957629 Msa0711100:intron 45.0%
GGATCTCAACAGTGTACTCT+GGG - chr5_1:2957611-2957630 Msa0711100:intron 45.0%
AGTGTACTCTGGGTTTGTCA+GGG - chr5_1:2957621-2957640 Msa0711100:intron 45.0%
ACTGTAACGACAAGTAACCC+AGG + chr5_1:2957669-2957688 None:intergenic 45.0%
! ATGCCTTTTGGATGACTCTG+AGG - chr5_1:2958065-2958084 Msa0711100:intron 45.0%
ACTCCTCAGAGTCATCCAAA+AGG + chr5_1:2958071-2958090 None:intergenic 45.0%
! TGGATGACTCTGAGGAGTTA+TGG - chr5_1:2958073-2958092 Msa0711100:intron 45.0%
!! TTGAGCATGCTACTTTGACC+TGG - chr5_1:2959255-2959274 Msa0711100:intron 45.0%
!! TGAGCATGCTACTTTGACCT+GGG - chr5_1:2959256-2959275 Msa0711100:intron 45.0%
TCTTCATCATCAGATTGGGC+TGG + chr5_1:2959283-2959302 None:intergenic 45.0%
! GCAGTAAAAGCTGATGGACA+AGG - chr5_1:2959614-2959633 Msa0711100:intron 45.0%
! AGATGGTAGTAGCTTGGTGA+TGG - chr5_1:2959977-2959996 Msa0711100:CDS 45.0%
CTGCAATGAAGGCTAACGAA+AGG + chr5_1:2960096-2960115 None:intergenic 45.0%
!! CGTTCTTTGTGTTGGCTTTG+AGG - chr5_1:2960125-2960144 Msa0711100:CDS 45.0%
!! TCTTTGTGTTGGCTTTGAGG+GGG - chr5_1:2960128-2960147 Msa0711100:CDS 45.0%
CGGTTCTGTAAGGATGAGTT+AGG - chr5_1:2960228-2960247 Msa0711100:intron 45.0%
!! GCCTGTGATTTTCGGATTAG+GGG - chr5_1:2960450-2960469 Msa0711100:intron 45.0%
TCCCCTAATCCGAAAATCAC+AGG + chr5_1:2960454-2960473 None:intergenic 45.0%
GGAATTGGCACAATTGAAGC+AGG - chr5_1:2960596-2960615 Msa0711100:intron 45.0%
CCTAGCCTGAAGAAAAGAGT+TGG + chr5_1:2960895-2960914 None:intergenic 45.0%
! CCAACTCTTTTCTTCAGGCT+AGG - chr5_1:2960892-2960911 Msa0711100:intron 45.0%
ATAGTTCATCTCTTCCTGCG+TGG + chr5_1:2960940-2960959 None:intergenic 45.0%
ACCTAACTCACAAGTACCTG+TGG - chr5_1:2960997-2961016 Msa0711100:intron 45.0%
CCTAACTCACAAGTACCTGT+GGG - chr5_1:2960998-2961017 Msa0711100:intron 45.0%
TTTCACTTTCAGGATCCCAC+AGG + chr5_1:2961016-2961035 None:intergenic 45.0%
!! TGAAGGGAAAGGTGTTGGTT+TGG + chr5_1:2961109-2961128 None:intergenic 45.0%
AAACCAACACCTTTCCCTTC+AGG - chr5_1:2961108-2961127 Msa0711100:intron 45.0%
TATTTGAGGGAAAGGACAGG+AGG - chr5_1:2961995-2962014 Msa0711100:intron 45.0%
GGTCATTGTTGGACCAAACT+TGG + chr5_1:2962302-2962321 None:intergenic 45.0%
TCCAACAATGACCTACTCTG+CGG - chr5_1:2962309-2962328 Msa0711100:intron 45.0%
CTCGGGTGAGTGAAATCATT+GGG + chr5_1:2962476-2962495 None:intergenic 45.0%
CCCAAAAGAGAACCATCCTA+AGG - chr5_1:2962533-2962552 Msa0711100:intron 45.0%
!! CTTTTGGGGAGTGATTCATG+GGG + chr5_1:2962629-2962648 None:intergenic 45.0%
!! CCTTTTGGGGAGTGATTCAT+GGG + chr5_1:2962630-2962649 None:intergenic 45.0%
TCTTGGAGAACCAAAAGAGG+GGG + chr5_1:2962673-2962692 None:intergenic 45.0%
AAATCGTGGCACGATTTGAC+AGG + chr5_1:2962848-2962867 None:intergenic 45.0%
GACAAAAATCGTGGCACAAG+AGG + chr5_1:2962928-2962947 None:intergenic 45.0%
CTCAACACGTGGAAATACCA+CGG - chr5_1:2963024-2963043 Msa0711100:intron 45.0%
! GGTCAAGGAGTCTTTGACTT+CGG - chr5_1:2963117-2963136 Msa0711100:intron 45.0%
! AAGGAGTCTTTGACTTCGGA+AGG - chr5_1:2963121-2963140 Msa0711100:intron 45.0%
! ACTTCGGAAGGTACAGTTTC+TGG - chr5_1:2963133-2963152 Msa0711100:intron 45.0%
GCAGCTCCTTACCTATTAGT+TGG - chr5_1:2963215-2963234 Msa0711100:CDS 45.0%
TGGTCAGTTGAGACAGAAGT+CGG - chr5_1:2963235-2963254 Msa0711100:CDS 45.0%
GGTTACACTGGAGATAGTGA+GGG - chr5_1:2963256-2963275 Msa0711100:CDS 45.0%
TCTCATCACTGCATTGCTGA+TGG + chr5_1:2963294-2963313 None:intergenic 45.0%
!! ATAGACACTGTTTCTGCTGC+CGG - chr5_1:2963316-2963335 Msa0711100:CDS 45.0%
AAGCTCCACCATTTCAAACC+CGG + chr5_1:2963338-2963357 None:intergenic 45.0%
CTTCATCGAACTTCTGTACC+AGG + chr5_1:2963409-2963428 None:intergenic 45.0%
ATCACCCTGCCTGATTAATG+CGG + chr5_1:2963452-2963471 None:intergenic 45.0%
CTCAACTTTCACGTTCTTGG+AGG - chr5_1:2963651-2963670 Msa0711100:CDS 45.0%
!!! AAATATTTTAATATTCAAAA+TGG + chr5_1:2961432-2961451 None:intergenic 5.0%
!! ATTGGCTCGTATCCGACAAC+TGG - chr5_1:2955218-2955237 Msa0711100:three_prime_UTR 50.0%
CGTATCCGACAACTGGAACA+CGG - chr5_1:2955225-2955244 Msa0711100:three_prime_UTR 50.0%
GCCTCTTGCAAAGCAAGGTA+AGG - chr5_1:2956957-2956976 Msa0711100:CDS 50.0%
GCCTTACCTTGCTTTGCAAG+AGG + chr5_1:2956961-2956980 None:intergenic 50.0%
ATGACGCCAAACCGACTATG+TGG + chr5_1:2956995-2957014 None:intergenic 50.0%
GGCATCAGTGTTGTCAATGG+CGG - chr5_1:2957359-2957378 Msa0711100:CDS 50.0%
! TCAGTGTTGTCAATGGCGGA+AGG - chr5_1:2957363-2957382 Msa0711100:CDS 50.0%
CAGTGTACTCTGGGTTTGTC+AGG - chr5_1:2957620-2957639 Msa0711100:intron 50.0%
GTGTACTCTGGGTTTGTCAG+GGG - chr5_1:2957622-2957641 Msa0711100:intron 50.0%
TCATGCTAAGATGACGCTCC+TGG - chr5_1:2957648-2957667 Msa0711100:intron 50.0%
CATGCTAAGATGACGCTCCT+GGG - chr5_1:2957649-2957668 Msa0711100:intron 50.0%
GAGTGCATTAGAAGAGCAGC+TGG - chr5_1:2958334-2958353 Msa0711100:intron 50.0%
!! GAGCATGCTACTTTGACCTG+GGG - chr5_1:2959257-2959276 Msa0711100:intron 50.0%
GTCGCAATTAAGGCGACTAG+GGG + chr5_1:2960074-2960093 None:intergenic 50.0%
GGTCGCAATTAAGGCGACTA+GGG + chr5_1:2960075-2960094 None:intergenic 50.0%
AGGTCGCAATTAAGGCGACT+AGG + chr5_1:2960076-2960095 None:intergenic 50.0%
CAACACAAAGAACGTGCTGG+AGG + chr5_1:2960119-2960138 None:intergenic 50.0%
CTCCAGCACGTTCTTTGTGT+TGG - chr5_1:2960117-2960136 Msa0711100:CDS 50.0%
AGCCAACACAAAGAACGTGC+TGG + chr5_1:2960122-2960141 None:intergenic 50.0%
! GGGTGGATTTAGTCCCACAT+CGG - chr5_1:2960148-2960167 Msa0711100:CDS 50.0%
GCACTTCTCACCTTACAAGC+CGG - chr5_1:2960208-2960227 Msa0711100:intron 50.0%
!! CCTTACAGAACCGGCTTGTA+AGG + chr5_1:2960221-2960240 None:intergenic 50.0%
! CCTTACAAGCCGGTTCTGTA+AGG - chr5_1:2960218-2960237 Msa0711100:intron 50.0%
GTTGGGCAATTTACCGCCAA+TGG + chr5_1:2960877-2960896 None:intergenic 50.0%
AGTGACAACCTAATCCACGC+AGG - chr5_1:2960923-2960942 Msa0711100:intron 50.0%
CATCTCTTCCTGCGTGGATT+AGG + chr5_1:2960934-2960953 None:intergenic 50.0%
CCCACAGGTACTTGTGAGTT+AGG + chr5_1:2961001-2961020 None:intergenic 50.0%
! ATACGGACAGAGTGCCTGAA+GGG + chr5_1:2961125-2961144 None:intergenic 50.0%
! AATACGGACAGAGTGCCTGA+AGG + chr5_1:2961126-2961145 None:intergenic 50.0%
ATTGGCCCATTGGATGCTAG+TGG - chr5_1:2961586-2961605 Msa0711100:intron 50.0%
AATCCACACTGCTGGATCTC+TGG + chr5_1:2961657-2961676 None:intergenic 50.0%
CCTTGCAAAATCCACACTGC+TGG + chr5_1:2961665-2961684 None:intergenic 50.0%
! CCAGCAGTGTGGATTTTGCA+AGG - chr5_1:2961662-2961681 Msa0711100:intron 50.0%
ATAGGCTTCGCCTCTCTCTT+TGG - chr5_1:2961921-2961940 Msa0711100:intron 50.0%
ACAGGAGGCCTCCTAATGTT+GGG - chr5_1:2962010-2962029 Msa0711100:intron 50.0%
TCCGCAGAGTAGGTCATTGT+TGG + chr5_1:2962313-2962332 None:intergenic 50.0%
GATCAATCTCTCCGCAGAGT+AGG + chr5_1:2962323-2962342 None:intergenic 50.0%
CCTCGGGTGAGTGAAATCAT+TGG + chr5_1:2962477-2962496 None:intergenic 50.0%
CCAATGATTTCACTCACCCG+AGG - chr5_1:2962474-2962493 Msa0711100:intron 50.0%
GAGCAACTTGGGTGAGTCTT+GGG + chr5_1:2962576-2962595 None:intergenic 50.0%
TGAGCAACTTGGGTGAGTCT+TGG + chr5_1:2962577-2962596 None:intergenic 50.0%
CCCATGAATCACTCCCCAAA+AGG - chr5_1:2962627-2962646 Msa0711100:intron 50.0%
!! GCCTTTTGGGGAGTGATTCA+TGG + chr5_1:2962631-2962650 None:intergenic 50.0%
AACCAAAAGAGGGGGCTCTT+GGG + chr5_1:2962665-2962684 None:intergenic 50.0%
AGGTTGAAGGTCTTTGGGTG+AGG + chr5_1:2962717-2962736 None:intergenic 50.0%
GAGACAGAAGTCGGTTACAC+TGG - chr5_1:2963244-2963263 Msa0711100:CDS 50.0%
CGGTTACACTGGAGATAGTG+AGG - chr5_1:2963255-2963274 Msa0711100:CDS 50.0%
!! TAGACACTGTTTCTGCTGCC+GGG - chr5_1:2963317-2963336 Msa0711100:CDS 50.0%
TTCTGCTGCCGGGTTTGAAA+TGG - chr5_1:2963327-2963346 Msa0711100:CDS 50.0%
TGCTCAGATGTTGAGGGACA+TGG - chr5_1:2963369-2963388 Msa0711100:CDS 50.0%
TTCTGTACCAGGAACCGTAG+TGG + chr5_1:2963398-2963417 None:intergenic 50.0%
TGCACCGCATTAATCAGGCA+GGG - chr5_1:2963445-2963464 Msa0711100:CDS 50.0%
TGATATGGCTGCTGAGGCTG+AGG - chr5_1:2955170-2955189 Msa0711100:three_prime_UTR 55.0%
! CATCGCCTCCTCCTTTTCCT+TGG + chr5_1:2955755-2955774 None:intergenic 55.0%
! CATGCCATTGCTGGCTATGG+CGG - chr5_1:2957406-2957425 Msa0711100:intron 55.0%
! ATGCCATTGCTGGCTATGGC+GGG - chr5_1:2957407-2957426 Msa0711100:intron 55.0%
ATACCCGCCATAGCCAGCAA+TGG + chr5_1:2957413-2957432 None:intergenic 55.0%
GCAATTAAGGCGACTAGGGG+CGG + chr5_1:2960071-2960090 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - chr5_1:2960131-2960150 Msa0711100:CDS 55.0%
! GTGCCTGAAGGGAAAGGTGT+TGG + chr5_1:2961114-2961133 None:intergenic 55.0%
! GACAGAGTGCCTGAAGGGAA+AGG + chr5_1:2961120-2961139 None:intergenic 55.0%
!! GAGACGATGGATTGGCCCAT+TGG - chr5_1:2961576-2961595 Msa0711100:intron 55.0%
CAACCAGAGATCCAGCAGTG+TGG - chr5_1:2961651-2961670 Msa0711100:intron 55.0%
GCTTCGCCTCTCTCTTTGGA+AGG - chr5_1:2961925-2961944 Msa0711100:intron 55.0%
GACAGGAGGCCTCCTAATGT+TGG - chr5_1:2962009-2962028 Msa0711100:intron 55.0%
GGGGAGTGATTCATGGGGTT+GGG + chr5_1:2962624-2962643 None:intergenic 55.0%
TGGGGAGTGATTCATGGGGT+TGG + chr5_1:2962625-2962644 None:intergenic 55.0%
!!! GAGAGGGTTGGTGCCTTTTG+GGG + chr5_1:2962643-2962662 None:intergenic 55.0%
!!! GGAGAGGGTTGGTGCCTTTT+GGG + chr5_1:2962644-2962663 None:intergenic 55.0%
GAACCAAAAGAGGGGGCTCT+TGG + chr5_1:2962666-2962685 None:intergenic 55.0%
! TGCTGCCGGGTTTGAAATGG+TGG - chr5_1:2963330-2963349 Msa0711100:CDS 55.0%
GAGGGACATGGAAGCCACTA+CGG - chr5_1:2963381-2963400 Msa0711100:CDS 55.0%
ATGGAAGCCACTACGGTTCC+TGG - chr5_1:2963388-2963407 Msa0711100:CDS 55.0%
CTCGCTGCACCGCATTAATC+AGG - chr5_1:2963440-2963459 Msa0711100:CDS 55.0%
CTGCACCGCATTAATCAGGC+AGG - chr5_1:2963444-2963463 Msa0711100:CDS 55.0%
ACGCAGTAGCTACACAGCCC+TGG + chr5_1:2955610-2955629 None:intergenic 60.0%
CTAGGGGCGGACCGCAATTA+AGG + chr5_1:2960058-2960077 None:intergenic 60.0%
CGTGCTGGAGGCTGCAATGA+AGG + chr5_1:2960107-2960126 None:intergenic 60.0%
!!! GGGAGAGGGTTGGTGCCTTT+TGG + chr5_1:2962645-2962664 None:intergenic 60.0%
AAGAGGGGGCTCTTGGGAGA+GGG + chr5_1:2962659-2962678 None:intergenic 60.0%
AAAGAGGGGGCTCTTGGGAG+AGG + chr5_1:2962660-2962679 None:intergenic 60.0%
! CTCCCAAGAGCCCCCTCTTT+TGG - chr5_1:2962660-2962679 Msa0711100:intron 60.0%
!! CATCAGATTGGGCTGGCCCC+AGG + chr5_1:2959276-2959295 None:intergenic 65.0%
GGGGCGGACCGCAATTAAGG+CGG + chr5_1:2960055-2960074 None:intergenic 65.0%
GGGGGCTCTTGGGAGAGGGT+TGG + chr5_1:2962655-2962674 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2955076 2963784 2955076 ID=Msa0711100;Name=Msa0711100
chr5_1 mRNA 2955076 2963784 2955076 ID=Msa0711100-mRNA-1;Parent=Msa0711100;Name=Msa0711100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=69|1|1|1|0.92|0.86|15|358|654
chr5_1 exon 2955076 2955742 2955076 ID=Msa0711100-mRNA-1:exon:1028;Parent=Msa0711100-mRNA-1
chr5_1 exon 2956914 2957007 2956914 ID=Msa0711100-mRNA-1:exon:1027;Parent=Msa0711100-mRNA-1
chr5_1 exon 2957177 2957389 2957177 ID=Msa0711100-mRNA-1:exon:1026;Parent=Msa0711100-mRNA-1
chr5_1 exon 2958223 2958293 2958223 ID=Msa0711100-mRNA-1:exon:1025;Parent=Msa0711100-mRNA-1
chr5_1 exon 2958927 2959037 2958927 ID=Msa0711100-mRNA-1:exon:1024;Parent=Msa0711100-mRNA-1
chr5_1 exon 2959184 2959267 2959184 ID=Msa0711100-mRNA-1:exon:1023;Parent=Msa0711100-mRNA-1
chr5_1 exon 2959947 2960207 2959947 ID=Msa0711100-mRNA-1:exon:1022;Parent=Msa0711100-mRNA-1
chr5_1 exon 2960289 2960345 2960289 ID=Msa0711100-mRNA-1:exon:1021;Parent=Msa0711100-mRNA-1
chr5_1 exon 2960457 2960525 2960457 ID=Msa0711100-mRNA-1:exon:1020;Parent=Msa0711100-mRNA-1
chr5_1 exon 2960732 2960872 2960732 ID=Msa0711100-mRNA-1:exon:1019;Parent=Msa0711100-mRNA-1
chr5_1 exon 2962841 2962943 2962841 ID=Msa0711100-mRNA-1:exon:1018;Parent=Msa0711100-mRNA-1
chr5_1 exon 2963057 2963118 2963057 ID=Msa0711100-mRNA-1:exon:1017;Parent=Msa0711100-mRNA-1
chr5_1 exon 2963202 2963518 2963202 ID=Msa0711100-mRNA-1:exon:1016;Parent=Msa0711100-mRNA-1
chr5_1 exon 2963614 2963699 2963614 ID=Msa0711100-mRNA-1:exon:1015;Parent=Msa0711100-mRNA-1
chr5_1 exon 2963729 2963784 2963729 ID=Msa0711100-mRNA-1:exon:1014;Parent=Msa0711100-mRNA-1
chr5_1 five_prime_UTR 2963729 2963784 2963729 ID=Msa0711100-mRNA-1:five_prime_utr;Parent=Msa0711100-mRNA-1
chr5_1 five_prime_UTR 2963687 2963699 2963687 ID=Msa0711100-mRNA-1:five_prime_utr;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2963614 2963686 2963614 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2963202 2963518 2963202 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2963057 2963118 2963057 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2962841 2962943 2962841 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2960732 2960872 2960732 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2960457 2960525 2960457 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2960289 2960345 2960289 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2959947 2960207 2959947 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2959184 2959267 2959184 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2958927 2959037 2958927 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2958223 2958293 2958223 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2957177 2957389 2957177 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2956914 2957007 2956914 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 CDS 2955434 2955742 2955434 ID=Msa0711100-mRNA-1:cds;Parent=Msa0711100-mRNA-1
chr5_1 three_prime_UTR 2955076 2955433 2955076 ID=Msa0711100-mRNA-1:three_prime_utr;Parent=Msa0711100-mRNA-1
Gene Sequence

>Msa0711100

ATGGCTGCTGAGGCTGAGGATATGAATCATCATCATGAATCGTTATTGGCTCGTATCCGACAACTGGAACACGAGCGTGATGAATTACGCAAAGATATCGAACAGCTATGTATGCAACAAGCTGGACCTGCTTATCTTAGTGTCTCTACAAGAATGCATTTTCAAAGATTGGAGCAGGAGATTCAAACCCTTCAAAATAAGTTGGCTGCTTCCACAAGAGAAACTCTTAATCTACAAGACCAACTTTCTCAGGCTTACAGAATTAAAGCTCAACTCGCAGATCTACACGCTGCCGAGCATTCAAAGAATATCGAAGCCGAGAAGCAGCTTAAATTTTTCCAGGGCTGTGTAGCTACTGCGTTTGCTGAAAGGGATCATGCAATAATTGAGGCTGAAAAAGCCAAGGAAAAGGAGGAGGCGATGTCACAACAAATACATGGCTTCCTCAAAAGGATACAAGAACTCACCTCAGATTGTTGTAAGCAGAAGGAATTTATTGATGCTCTTCAGAGTGATCAAGCAATGTATATAGACCAAAATGAAAAATTTAAGAAGGTAATTAATAAGTTCTTTCAGATCAGGCAATATTCCCAGAAAGAATGTGACGATACCAGTTGGGATGTTAAATGTACATGCCTTTTGGATGACTCTGAGGAGTTATGGAGTTTCAATGATGCTTCCACCTCTAAATACATTAGTGCATTAGAAGAGCAGCTGGACAAAGTAAACAATTCTGTGGACTGTCTTCAAAGTAAACTTAGGGTGGGTTTGGAAATTGAAAATCATCTGAAGAAGAGAATCAATTTAATGGAACAAAAACAAATTTATATGAACAAAGTGATTGAGAATGGCATAGCAGACTTAAAACATCATCATTTTAAGTATAGGGATCATATTATGACTTTACTTCGTGATGGGGAATCCACTATTAAATCCATAATCAATGTGATTGATGAAAGAGTCAGGAGGTGCAATGAGAATATTGAGCCAAATTTGGTCCATCTAAGAGACGAAGAAAGAGAAGAGAATGAATGTGGGGATGCGCACATAAGCCCTCAAGATAAAACTGTTTCACAGTCCAAGAATACTGGTCTTGTCTCATTGGCAGTAAAAGCTGATGGACAAGGTGATTCATCTGATGTTTTAGCAATGGCATTGCATGAAAAGGTTGATGCATTATTGCTGTTATCACAGCAAGAAGAAAGACATCTATTGGAGAGAAATGTGAATTCAGCCCTTCAAATAAAGACTGAAGAACTTCAAAAGAACTTGTTACAGGTTACTAATGAAAAGGTGAAAGCTCTAATGGAATTGGCACAATTGAAGCAGGAACATCAATTACTTCTGGAAAAATTAGATCAGGAGACTAATCAAGGAGTTGATAGTGGAGAAAGAAAGCTTGTTATTCGTGAAAGAGATGGAACCCTAAAAAACTTGCTGAAGAAATCATATTTGAGACGATGGATTGGCCCATTGGATGCTAGTGGAAAAGAAGTTGACAGTAGTCCAAATAATGAAGGGAAGTTCTTCAACCAGAGATCCAGCAGTGTGGATTTTGCAAGAATGAAGATTGAAAATGCAACTCTTAAAGAAAGCATGGATAGCATGGAGCATTTAACTTCGTCAATTCATAGGCTTCGCCTCTCTCTTTGGAAGGTCAAGGAGTCTTTGACTTCGGAAGGTACAGTTTCTGGTGTTTCAGAAGTCCTTAATGGTGCTATCAATGAAGCAAAACTTTTAAGGACTGCTCTTGGCAGCTCCTTACCTATTAGTTGGTCAGTTGAGACAGAAGTCGGTTACACTGGAGATAGTGAGGGCGTAGACACAGTCCATCAGCAATGCAGTGATGAGAAGATAGACACTGTTTCTGCTGCCGGGTTTGAAATGGTGGAGCTTTTGATTTTTGCTGCTCAGATGTTGAGGGACATGGAAGCCACTACGGTTCCTGGTACAGAAGTTCGATGA

Protein sequence

>Msa0711100

MAAEAEDMNHHHESLLARIRQLEHERDELRKDIEQLCMQQAGPAYLSVSTRMHFQRLEQEIQTLQNKLAASTRETLNLQDQLSQAYRIKAQLADLHAAEHSKNIEAEKQLKFFQGCVATAFAERDHAIIEAEKAKEKEEAMSQQIHGFLKRIQELTSDCCKQKEFIDALQSDQAMYIDQNEKFKKVINKFFQIRQYSQKECDDTSWDVKCTCLLDDSEELWSFNDASTSKYISALEEQLDKVNNSVDCLQSKLRVGLEIENHLKKRINLMEQKQIYMNKVIENGIADLKHHHFKYRDHIMTLLRDGESTIKSIINVIDERVRRCNENIEPNLVHLRDEEREENECGDAHISPQDKTVSQSKNTGLVSLAVKADGQGDSSDVLAMALHEKVDALLLLSQQEERHLLERNVNSALQIKTEELQKNLLQVTNEKVKALMELAQLKQEHQLLLEKLDQETNQGVDSGERKLVIRERDGTLKNLLKKSYLRRWIGPLDASGKEVDSSPNNEGKFFNQRSSSVDFARMKIENATLKESMDSMEHLTSSIHRLRLSLWKVKESLTSEGTVSGVSEVLNGAINEAKLLRTALGSSLPISWSVETEVGYTGDSEGVDTVHQQCSDEKIDTVSAAGFEMVELLIFAAQMLRDMEATTVPGTEVR*